BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2255c

Length=64
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609392|ref|NP_216771.1|  hypothetical protein Rv2255c [Mycob...   127    6e-28


>gi|15609392|ref|NP_216771.1| hypothetical protein Rv2255c [Mycobacterium tuberculosis H37Rv]
 gi|31793435|ref|NP_855928.1| hypothetical protein Mb2279c [Mycobacterium bovis AF2122/97]
 gi|121638138|ref|YP_978362.1| hypothetical protein BCG_2273c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 22 more sequence titles
 Length=64

 Score =  127 bits (319),  Expect = 6e-28, Method: Compositional matrix adjust.
 Identities = 63/64 (99%), Positives = 64/64 (100%), Gaps = 0/64 (0%)

Query  1   VDGIVDRGVRARPCQKVVAVLRRSKSHIDKRLDAATGNAFLGKQVLSAAGVVEYRPPRRS  60
           +DGIVDRGVRARPCQKVVAVLRRSKSHIDKRLDAATGNAFLGKQVLSAAGVVEYRPPRRS
Sbjct  1   MDGIVDRGVRARPCQKVVAVLRRSKSHIDKRLDAATGNAFLGKQVLSAAGVVEYRPPRRS  60

Query  61  PLST  64
           PLST
Sbjct  61  PLST  64



Lambda     K      H
   0.321    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 130804070320


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40