BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2269c
Length=110
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609406|ref|NP_216785.1| hypothetical protein Rv2269c [Mycob... 218 2e-55
gi|340627275|ref|YP_004745727.1| hypothetical protein MCAN_22931... 213 7e-54
gi|289570389|ref|ZP_06450616.1| hypothetical protein TBJG_00756 ... 207 4e-52
>gi|15609406|ref|NP_216785.1| hypothetical protein Rv2269c [Mycobacterium tuberculosis H37Rv]
gi|31793448|ref|NP_855941.1| hypothetical protein Mb2292c [Mycobacterium bovis AF2122/97]
gi|121638151|ref|YP_978375.1| hypothetical protein BCG_2286c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
39 more sequence titles
Length=110
Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 109/110 (99%), Positives = 110/110 (100%), Gaps = 0/110 (0%)
Query 1 VANDARPLARLANCRVGDQSSATHAYTVGPVLGVPPTGGVDLRYGGRAGIGRSETVTDHG 60
+ANDARPLARLANCRVGDQSSATHAYTVGPVLGVPPTGGVDLRYGGRAGIGRSETVTDHG
Sbjct 1 MANDARPLARLANCRVGDQSSATHAYTVGPVLGVPPTGGVDLRYGGRAGIGRSETVTDHG 60
Query 61 AVGRRYHQPCAGQIRLSELRVTILLRCETLCETAQLLRCPPLPCDCSTPL 110
AVGRRYHQPCAGQIRLSELRVTILLRCETLCETAQLLRCPPLPCDCSTPL
Sbjct 61 AVGRRYHQPCAGQIRLSELRVTILLRCETLCETAQLLRCPPLPCDCSTPL 110
>gi|340627275|ref|YP_004745727.1| hypothetical protein MCAN_22931 [Mycobacterium canettii CIPT
140010059]
gi|340005465|emb|CCC44625.1| hypothetical protein MCAN_22931 [Mycobacterium canettii CIPT
140010059]
Length=110
Score = 213 bits (542), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 107/110 (98%), Positives = 108/110 (99%), Gaps = 0/110 (0%)
Query 1 VANDARPLARLANCRVGDQSSATHAYTVGPVLGVPPTGGVDLRYGGRAGIGRSETVTDHG 60
+ANDARPLARLANCRVGDQSSATHA TVGPVLGVPPTGGVDLRYGGRAGIGRSETV DHG
Sbjct 1 MANDARPLARLANCRVGDQSSATHADTVGPVLGVPPTGGVDLRYGGRAGIGRSETVADHG 60
Query 61 AVGRRYHQPCAGQIRLSELRVTILLRCETLCETAQLLRCPPLPCDCSTPL 110
AVGRRYHQPCAGQIRLSELRVTILLRCETLCETAQLLRCPPLPCDCSTPL
Sbjct 61 AVGRRYHQPCAGQIRLSELRVTILLRCETLCETAQLLRCPPLPCDCSTPL 110
>gi|289570389|ref|ZP_06450616.1| hypothetical protein TBJG_00756 [Mycobacterium tuberculosis T17]
gi|289544143|gb|EFD47791.1| hypothetical protein TBJG_00756 [Mycobacterium tuberculosis T17]
Length=107
Score = 207 bits (527), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 104/104 (100%), Positives = 104/104 (100%), Gaps = 0/104 (0%)
Query 7 PLARLANCRVGDQSSATHAYTVGPVLGVPPTGGVDLRYGGRAGIGRSETVTDHGAVGRRY 66
PLARLANCRVGDQSSATHAYTVGPVLGVPPTGGVDLRYGGRAGIGRSETVTDHGAVGRRY
Sbjct 4 PLARLANCRVGDQSSATHAYTVGPVLGVPPTGGVDLRYGGRAGIGRSETVTDHGAVGRRY 63
Query 67 HQPCAGQIRLSELRVTILLRCETLCETAQLLRCPPLPCDCSTPL 110
HQPCAGQIRLSELRVTILLRCETLCETAQLLRCPPLPCDCSTPL
Sbjct 64 HQPCAGQIRLSELRVTILLRCETLCETAQLLRCPPLPCDCSTPL 107
Lambda K H
0.322 0.139 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129022162688
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40