BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2272 Length=122 Score E Sequences producing significant alignments: (Bits) Value gi|15609409|ref|NP_216788.1| transmembrane protein [Mycobacteriu... 239 1e-61 gi|183983358|ref|YP_001851649.1| transmembrane protein [Mycobact... 162 1e-38 gi|240170116|ref|ZP_04748775.1| transmembrane protein [Mycobacte... 160 4e-38 gi|118616977|ref|YP_905309.1| transmembrane protein [Mycobacteri... 157 7e-37 gi|118472452|ref|YP_885623.1| inner membrane protein YidH [Mycob... 151 3e-35 gi|296166163|ref|ZP_06848607.1| transmembrane protein [Mycobacte... 139 1e-31 gi|317509083|ref|ZP_07966712.1| hypothetical protein HMPREF9336_... 110 5e-23 gi|288916589|ref|ZP_06410965.1| protein of unknown function DUF2... 95.9 2e-18 gi|257055331|ref|YP_003133163.1| hypothetical protein Svir_12890... 93.6 8e-18 gi|312195522|ref|YP_004015583.1| hypothetical protein FraEuI1c_1... 92.0 2e-17 gi|108802277|ref|YP_642474.1| hypothetical protein Mmcs_5317 [My... 90.9 6e-17 gi|315446694|ref|YP_004079573.1| hypothetical protein Mspyr1_521... 90.9 6e-17 gi|311277351|ref|YP_003939582.1| hypothetical protein Entcl_0019... 89.7 1e-16 gi|146309686|ref|YP_001174760.1| hypothetical protein Ent638_001... 89.7 1e-16 gi|120406788|ref|YP_956617.1| hypothetical protein Mvan_5846 [My... 89.0 2e-16 gi|195940891|ref|ZP_03086273.1| hypothetical protein Escherichco... 88.6 3e-16 gi|295095322|emb|CBK84412.1| Predicted membrane protein [Enterob... 87.8 4e-16 gi|169627774|ref|YP_001701423.1| hypothetical protein MAB_0671 [... 87.4 7e-16 gi|345297202|ref|YP_004826560.1| hypothetical protein Entas_0018... 87.0 8e-16 gi|145221571|ref|YP_001132249.1| hypothetical protein Mflv_0978 ... 87.0 9e-16 gi|336177243|ref|YP_004582618.1| hypothetical protein FsymDg_120... 86.3 1e-15 gi|261341653|ref|ZP_05969511.1| hypothetical protein ENTCAN_0812... 85.9 2e-15 gi|218551211|ref|YP_002385003.1| hypothetical protein EFER_3976 ... 84.7 4e-15 gi|336247880|ref|YP_004591590.1| inner membrane protein YidH [En... 84.3 6e-15 gi|296100392|ref|YP_003610538.1| hypothetical protein ECL_00021 ... 84.0 6e-15 gi|152972588|ref|YP_001337734.1| hypothetical protein KPN_04084 ... 84.0 6e-15 gi|157144320|ref|YP_001451639.1| hypothetical protein CKO_00024 ... 83.6 9e-15 gi|111027057|ref|YP_709035.1| hypothetical protein RHA1_ro11230 ... 83.6 9e-15 gi|72160575|ref|YP_288232.1| hypothetical protein Tfu_0171 [Ther... 83.2 1e-14 gi|260595850|ref|YP_003208421.1| Inner membrane protein YidH [Cr... 82.8 1e-14 gi|323975256|gb|EGB70360.1| inner membrane protein yidH [Escheri... 82.8 2e-14 gi|156936061|ref|YP_001439977.1| hypothetical protein ESA_03955 ... 82.4 2e-14 gi|326330929|ref|ZP_08197229.1| inner membrane protein YidH [Noc... 82.0 2e-14 gi|281180734|dbj|BAI57064.1| conserved hypothetical protein [Esc... 82.0 2e-14 gi|226309291|ref|YP_002769251.1| hypothetical protein RER_58040 ... 82.0 3e-14 gi|331649505|ref|ZP_08350591.1| inner membrane protein YidH [Esc... 82.0 3e-14 gi|222035395|emb|CAP78140.1| Inner membrane protein yidH [Escher... 81.6 3e-14 gi|16767091|ref|NP_462706.1| inner membrane protein [Salmonella ... 81.6 4e-14 gi|170018084|ref|YP_001723038.1| isocitrate dehydrogenase [Esche... 81.3 4e-14 gi|15804276|ref|NP_290315.1| hypothetical protein Z5171 [Escheri... 81.3 4e-14 gi|283787623|ref|YP_003367488.1| hypothetical protein ROD_40501 ... 81.3 5e-14 gi|91213204|ref|YP_543190.1| hypothetical protein UTI89_C4232 [E... 81.3 5e-14 gi|333920652|ref|YP_004494233.1| hypothetical protein AS9A_2985 ... 80.9 5e-14 gi|116668642|ref|YP_829575.1| hypothetical protein Arth_0074 [Ar... 80.9 6e-14 gi|26250421|ref|NP_756461.1| hypothetical protein c4600 [Escheri... 80.9 6e-14 gi|119717153|ref|YP_924118.1| hypothetical protein Noca_2929 [No... 80.9 6e-14 gi|161505668|ref|YP_001572780.1| hypothetical protein SARI_03844... 80.9 6e-14 gi|237729010|ref|ZP_04559491.1| conserved hypothetical protein [... 80.5 8e-14 gi|283836106|ref|ZP_06355847.1| hypothetical protein CIT292_1052... 80.5 8e-14 gi|332996072|gb|EGK15699.1| hypothetical protein SFVA6_4733 [Shi... 80.1 1e-13 >gi|15609409|ref|NP_216788.1| transmembrane protein [Mycobacterium tuberculosis H37Rv] gi|15841765|ref|NP_336802.1| hypothetical protein MT2333 [Mycobacterium tuberculosis CDC1551] gi|31793451|ref|NP_855944.1| hypothetical protein Mb2295 [Mycobacterium bovis AF2122/97] 80 more sequence titles Length=122 Score = 239 bits (609), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 121/122 (99%), Positives = 122/122 (100%), Gaps = 0/122 (0%) Query 1 VADDSNDTATDVEPDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLG 60 +ADDSNDTATDVEPDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLG Sbjct 1 MADDSNDTATDVEPDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLG 60 Query 61 VVLAILAILTSGMGLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVVAKAI 120 VVLAILAILTSGMGLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVVAKAI Sbjct 61 VVLAILAILTSGMGLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVVAKAI 120 Query 121 TG 122 TG Sbjct 121 TG 122 >gi|183983358|ref|YP_001851649.1| transmembrane protein [Mycobacterium marinum M] gi|183176684|gb|ACC41794.1| conserved transmembrane protein [Mycobacterium marinum M] Length=125 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 99/119 (84%), Positives = 104/119 (88%), Gaps = 1/119 (0%) Query 4 DSNDTATDVEPDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVL 63 DS + A + EPDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPEL + GAR VLGVVL Sbjct 8 DSEECA-ETEPDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELAVHGARHVLGVVL 66 Query 64 AILAILTSGMGLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVVAKAITG 122 A LAILTSGMGLLRWQQADRAMRR PLP HPTP YLAVGL +VGVVAL LVVAK +TG Sbjct 67 ATLAILTSGMGLLRWQQADRAMRRGEPLPHHPTPAYLAVGLAIVGVVALILVVAKVVTG 125 >gi|240170116|ref|ZP_04748775.1| transmembrane protein [Mycobacterium kansasii ATCC 12478] Length=129 Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 94/116 (82%), Positives = 104/116 (90%), Gaps = 0/116 (0%) Query 7 DTATDVEPDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAIL 66 D+ + EPDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPEL IPGAR++LGV LA L Sbjct 14 DSPAETEPDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELVIPGARRMLGVALAAL 73 Query 67 AILTSGMGLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVVAKAITG 122 AILTSGMGLLRW+QADRAMRR LPLPRHPTP YLAVGL +VG+VAL LV+ +A+ G Sbjct 74 AILTSGMGLLRWRQADRAMRRGLPLPRHPTPAYLAVGLALVGIVALGLVIVQAVRG 129 >gi|118616977|ref|YP_905309.1| transmembrane protein [Mycobacterium ulcerans Agy99] gi|118569087|gb|ABL03838.1| conserved transmembrane protein [Mycobacterium ulcerans Agy99] Length=125 Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 97/119 (82%), Positives = 102/119 (86%), Gaps = 1/119 (0%) Query 4 DSNDTATDVEPDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVL 63 DS + A + EPDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPEL + GAR VL VVL Sbjct 8 DSEECA-ETEPDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELAVHGARHVLDVVL 66 Query 64 AILAILTSGMGLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVVAKAITG 122 A LAILT GMGLLRWQQADRAMRR PLP HPTP YLAVGL +VGVVAL LVVAK +TG Sbjct 67 ATLAILTRGMGLLRWQQADRAMRRGGPLPHHPTPAYLAVGLAIVGVVALILVVAKVVTG 125 >gi|118472452|ref|YP_885623.1| inner membrane protein YidH [Mycobacterium smegmatis str. MC2 155] gi|118173739|gb|ABK74635.1| inner membrane protein YidH [Mycobacterium smegmatis str. MC2 155] Length=122 Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 76/120 (64%), Positives = 91/120 (76%), Gaps = 5/120 (4%) Query 6 NDTATD-----VEPDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLG 60 ND+ TD +EPDYRFTLANERTFLAWQRT+LGLLAAAVA+VQ +PELTIPG R VLG Sbjct 2 NDSETDTVETLIEPDYRFTLANERTFLAWQRTSLGLLAAAVAVVQFLPELTIPGLRHVLG 61 Query 61 VVLAILAILTSGMGLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVVAKAI 120 + + +AILTS GL RW Q DRAMRR PLPR P YLA GL ++G+V +AL + ++ Sbjct 62 MTVGAMAILTSMAGLHRWTQVDRAMRRDQPLPRVSVPTYLAAGLSMMGLVTVALAITASL 121 >gi|296166163|ref|ZP_06848607.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898487|gb|EFG78049.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=123 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 96/122 (79%), Positives = 107/122 (88%), Gaps = 2/122 (1%) Query 1 VADDSNDTATDVEPDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLG 60 VAD D+A + EPDYRFT ANERTFLAWQRTALGLLAAAVALVQLVPEL +PGAR++LG Sbjct 4 VAD--TDSAEEQEPDYRFTFANERTFLAWQRTALGLLAAAVALVQLVPELGVPGARRLLG 61 Query 61 VVLAILAILTSGMGLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVVAKAI 120 LA+LAILTSGMGLLRWQQADRAMR PLPRHP+P YLAVGL VVG++ALALV+AKA+ Sbjct 62 GGLALLAILTSGMGLLRWQQADRAMRHGTPLPRHPSPTYLAVGLTVVGLIALALVIAKAV 121 Query 121 TG 122 G Sbjct 122 LG 123 >gi|317509083|ref|ZP_07966712.1| hypothetical protein HMPREF9336_03084 [Segniliparus rugosus ATCC BAA-974] gi|316252612|gb|EFV12053.1| hypothetical protein HMPREF9336_03084 [Segniliparus rugosus ATCC BAA-974] Length=121 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 60/105 (58%), Positives = 77/105 (74%), Gaps = 0/105 (0%) Query 13 EPDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSG 72 EPD RF LANERTFLAWQRTALGLLA +VA+VQL+P G Q G+ L +LA+L +G Sbjct 15 EPDCRFVLANERTFLAWQRTALGLLALSVAVVQLLPRPLATGPAQAFGLALNLLAMLAAG 74 Query 73 MGLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVVA 117 MG+ RW Q++RA+RR PLP+ P P YL G+ +V V+AL ++ A Sbjct 75 MGIRRWAQSERAIRRGEPLPKQPPPWYLGAGIVLVCVIALVVIAA 119 >gi|288916589|ref|ZP_06410965.1| protein of unknown function DUF202 [Frankia sp. EUN1f] gi|288352020|gb|EFC86221.1| protein of unknown function DUF202 [Frankia sp. EUN1f] Length=147 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 50/104 (49%), Positives = 68/104 (66%), Gaps = 0/104 (0%) Query 13 EPDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSG 72 +PD RF+LANERTFLAW RT+L LLA +A+VQ+VP+ + GAR VLGV L +L+I + Sbjct 37 DPDVRFSLANERTFLAWLRTSLALLAGGIAVVQVVPDFSFSGARHVLGVPLILLSIAVAA 96 Query 73 MGLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVV 116 RW ++AMR LP P LA G+ ++ +VAL V+ Sbjct 97 TSYRRWALVEKAMRERRSLPVSGLPRVLAAGVALLSLVALIFVL 140 >gi|257055331|ref|YP_003133163.1| hypothetical protein Svir_12890 [Saccharomonospora viridis DSM 43017] gi|256585203|gb|ACU96336.1| predicted membrane protein [Saccharomonospora viridis DSM 43017] Length=117 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 49/113 (44%), Positives = 66/113 (59%), Gaps = 2/113 (1%) Query 4 DSNDTATDVEPDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVL 63 + D +VEPDYRFTLANERTFLAW RT+ GL+A VA+ QL+P AR L + Sbjct 3 NRRDEDEEVEPDYRFTLANERTFLAWTRTSFGLIAGGVAVHQLLPRFATANARTTLAALC 62 Query 64 AILAILTSGMGLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVV 116 LA + + + W + +AMRR PLPR+P L V + V+ + A V+ Sbjct 63 IGLAAVLAASAYIHWWRVQKAMRRGEPLPRNPM--LLVVSVTVLAITGYAAVL 113 >gi|312195522|ref|YP_004015583.1| hypothetical protein FraEuI1c_1656 [Frankia sp. EuI1c] gi|311226858|gb|ADP79713.1| protein of unknown function DUF202 [Frankia sp. EuI1c] Length=135 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/110 (46%), Positives = 71/110 (65%), Gaps = 0/110 (0%) Query 13 EPDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSG 72 +PDYRF+LANERTFLAW RTAL LLA +A+VQ+VP +I AR +LG+ L +LAIL + Sbjct 24 DPDYRFSLANERTFLAWIRTALALLAGGIAVVQIVPSFSIGWARHILGIALIVLAILIAA 83 Query 73 MGLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVVAKAITG 122 RW++ +RA+R PLP P + +G+ V + A+ ++ G Sbjct 84 TSYTRWERRERAIREGAPLPPSLLPRLVGLGISAVMISAMVFILVDVARG 133 >gi|108802277|ref|YP_642474.1| hypothetical protein Mmcs_5317 [Mycobacterium sp. MCS] gi|119871430|ref|YP_941382.1| hypothetical protein Mkms_5406 [Mycobacterium sp. KMS] gi|126438259|ref|YP_001073950.1| hypothetical protein Mjls_5696 [Mycobacterium sp. JLS] gi|108772696|gb|ABG11418.1| protein of unknown function DUF202 [Mycobacterium sp. MCS] gi|119697519|gb|ABL94592.1| protein of unknown function DUF202 [Mycobacterium sp. KMS] gi|126238059|gb|ABO01460.1| protein of unknown function DUF202 [Mycobacterium sp. JLS] Length=117 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 51/115 (45%), Positives = 68/115 (60%), Gaps = 0/115 (0%) Query 8 TATDVEPDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILA 67 +A + EPDYRFTLANERTFLAW RT+L L+A +A+VQ VP IPG R L V L Sbjct 2 SAGEQEPDYRFTLANERTFLAWIRTSLALIAGGIAVVQFVPSFGIPGVRHGLSVALTAGG 61 Query 68 ILTSGMGLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVVAKAITG 122 + + + + RWQ+ AMRR LP P L + ++ +V L ++V TG Sbjct 62 GVLAALAVRRWQRVQAAMRRDEDLPATRVPVLLGGTIFLITMVVLVVLVIWPPTG 116 >gi|315446694|ref|YP_004079573.1| hypothetical protein Mspyr1_52120 [Mycobacterium sp. Spyr1] gi|315264997|gb|ADU01739.1| predicted membrane protein [Mycobacterium sp. Spyr1] Length=117 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 47/94 (50%), Positives = 58/94 (62%), Gaps = 0/94 (0%) Query 8 TATDVEPDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILA 67 T+ + EPDYRFTLANERTFLAW RTAL L+A +A+VQ VP IPG R LG+ L Sbjct 2 TSGEQEPDYRFTLANERTFLAWIRTALALIAGGIAVVQFVPSFGIPGVRHGLGLALTAGG 61 Query 68 ILTSGMGLLRWQQADRAMRRHLPLPRHPTPGYLA 101 + + + + RWQ+ AMRR LP P L Sbjct 62 GVLAALAVRRWQRVQAAMRRDEELPPTHVPALLG 95 >gi|311277351|ref|YP_003939582.1| hypothetical protein Entcl_0019 [Enterobacter cloacae SCF1] gi|308746546|gb|ADO46298.1| protein of unknown function DUF202 [Enterobacter cloacae SCF1] Length=115 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/103 (49%), Positives = 64/103 (63%), Gaps = 0/103 (0%) Query 14 PDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSGM 73 PDYRF+LANERTFLAW RTALG LAA V L QL P+ P R+VL ++L + A + Sbjct 10 PDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAPDFATPLIREVLALLLCLFAGALAVY 69 Query 74 GLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVV 116 G LRW ++AMR LP ++V L +V V +ALV+ Sbjct 70 GYLRWLNNEKAMRLKEDLPYTRGLLVISVTLLIVAAVVMALVL 112 >gi|146309686|ref|YP_001174760.1| hypothetical protein Ent638_0019 [Enterobacter sp. 638] gi|145316562|gb|ABP58709.1| protein of unknown function DUF202 [Enterobacter sp. 638] Length=115 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/103 (49%), Positives = 64/103 (63%), Gaps = 0/103 (0%) Query 14 PDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSGM 73 PDYRF+LANERTFLAW RTALG LAA V L QL P+ P R+VL ++L + A + + Sbjct 10 PDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAPDFATPLIREVLALLLCLFAGILAIY 69 Query 74 GLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVV 116 G LRW + ++AMR LP ++V L V V +ALV Sbjct 70 GYLRWLRNEKAMRLKQDLPYTRGLFIISVMLLSVAAVVMALVF 112 >gi|120406788|ref|YP_956617.1| hypothetical protein Mvan_5846 [Mycobacterium vanbaalenii PYR-1] gi|119959606|gb|ABM16611.1| protein of unknown function DUF202 [Mycobacterium vanbaalenii PYR-1] Length=117 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/85 (53%), Positives = 55/85 (65%), Gaps = 0/85 (0%) Query 8 TATDVEPDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILA 67 +A + EPDYRFTLANERTFLAW RTAL L+A +A+VQ VP IPG R L V L Sbjct 2 SAGEEEPDYRFTLANERTFLAWIRTALALIAGGIAVVQFVPSFGIPGVRHGLSVALTAGG 61 Query 68 ILTSGMGLLRWQQADRAMRRHLPLP 92 + + + + RWQ+ AMRR LP Sbjct 62 GVLAALAVRRWQRVQAAMRRDEDLP 86 >gi|195940891|ref|ZP_03086273.1| hypothetical protein EscherichcoliO157_31624 [Escherichia coli O157:H7 str. EC4024] gi|334121973|ref|ZP_08496016.1| inner membrane protein YidH [Enterobacter hormaechei ATCC 49162] gi|333392555|gb|EGK63657.1| inner membrane protein YidH [Enterobacter hormaechei ATCC 49162] Length=115 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 53/107 (50%), Positives = 68/107 (64%), Gaps = 5/107 (4%) Query 14 PDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSGM 73 PDYRF+LANERTFLAW RTALG LAA V L QL P+ P R+VL ++L ++A + + Sbjct 10 PDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAPDFATPLIREVLALLLCLIAGVLAIY 69 Query 74 GLLRWQQADRAMRRHLPLPRHPTPGYLAVG---LCVVGVVALALVVA 117 G LRW + ++AMR LP T G L + L V GVV L ++ A Sbjct 70 GYLRWLKNEKAMRLKQDLPY--TRGLLIISTILLMVAGVVMLLVLYA 114 >gi|295095322|emb|CBK84412.1| Predicted membrane protein [Enterobacter cloacae subsp. cloacae NCTC 9394] Length=115 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 53/107 (50%), Positives = 68/107 (64%), Gaps = 5/107 (4%) Query 14 PDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSGM 73 PDYRF+LANERTFLAW RTALG LAA V L QL P+ P R+VL ++L ++A + + Sbjct 10 PDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAPDFATPLIREVLALLLCLIAGVLAIY 69 Query 74 GLLRWQQADRAMRRHLPLPRHPTPGYLAVG---LCVVGVVALALVVA 117 G LRW + ++AMR LP T G L + L V GVV L ++ A Sbjct 70 GYLRWLRNEKAMRLKQDLPY--TRGLLIISTILLMVAGVVMLLVLYA 114 >gi|169627774|ref|YP_001701423.1| hypothetical protein MAB_0671 [Mycobacterium abscessus ATCC 19977] gi|169239741|emb|CAM60769.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=115 Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 46/94 (49%), Positives = 57/94 (61%), Gaps = 0/94 (0%) Query 6 NDTATDVEPDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAI 65 D EPDYRFTLANERT+LAW RT+L L+A+ VAL+Q VPE IPGAR V+ +VL Sbjct 3 TDEIAGTEPDYRFTLANERTYLAWVRTSLALIASGVALMQFVPEFGIPGARHVVSIVLVT 62 Query 66 LAILTSGMGLLRWQQADRAMRRHLPLPRHPTPGY 99 L + R + AMRR + LP P + Sbjct 63 TGGLLAMAAARRRRCVQEAMRRDMALPPSHMPTF 96 >gi|345297202|ref|YP_004826560.1| hypothetical protein Entas_0018 [Enterobacter asburiae LF7a] gi|345091139|gb|AEN62775.1| protein of unknown function DUF202 [Enterobacter asburiae LF7a] Length=115 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 52/100 (52%), Positives = 64/100 (64%), Gaps = 5/100 (5%) Query 14 PDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSGM 73 PDYRF+LANERTFLAW RTALG LAA V L QL P+ P R+VL ++L + A + + Sbjct 10 PDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAPDFATPLIREVLALLLCLFAGVLAIY 69 Query 74 GLLRWQQADRAMRRHLPLPRHPTPGYL---AVGLCVVGVV 110 G LRW + ++AMR LP T G L A+ L V GVV Sbjct 70 GYLRWLRNEKAMRLKQDLPY--TRGLLIISAILLTVAGVV 107 >gi|145221571|ref|YP_001132249.1| hypothetical protein Mflv_0978 [Mycobacterium gilvum PYR-GCK] gi|145214057|gb|ABP43461.1| protein of unknown function DUF202 [Mycobacterium gilvum PYR-GCK] Length=121 Score = 87.0 bits (214), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 44/82 (54%), Positives = 53/82 (65%), Gaps = 0/82 (0%) Query 11 DVEPDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILT 70 D EPDYRFTLANERTFLAW RTAL L+A +A+VQ VP IPG R L V L + Sbjct 9 DGEPDYRFTLANERTFLAWIRTALALIAGGIAVVQFVPSFGIPGVRHGLSVALTAGGGVL 68 Query 71 SGMGLLRWQQADRAMRRHLPLP 92 + + + RWQ+ AMR+ LP Sbjct 69 AALAVRRWQRVQAAMRQDGELP 90 >gi|336177243|ref|YP_004582618.1| hypothetical protein FsymDg_1204 [Frankia symbiont of Datisca glomerata] gi|334858223|gb|AEH08697.1| protein of unknown function DUF202 [Frankia symbiont of Datisca glomerata] Length=136 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/104 (51%), Positives = 66/104 (64%), Gaps = 0/104 (0%) Query 13 EPDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSG 72 +PD RF+LANERTFLAW RT+L LLA VA+VQ+VPE ++PGAR VLGV L +L + Sbjct 26 DPDVRFSLANERTFLAWIRTSLALLAGGVAVVQVVPEFSVPGARHVLGVPLIVLGTTVAA 85 Query 73 MGLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVV 116 RW +RAMR LP P LA G+ +V AL V+ Sbjct 86 TSYRRWVIVERAMRERRSLPVSGLPRLLAAGVALVSAAALIFVL 129 >gi|261341653|ref|ZP_05969511.1| hypothetical protein ENTCAN_08121 [Enterobacter cancerogenus ATCC 35316] gi|288316010|gb|EFC54948.1| inner membrane protein YidH [Enterobacter cancerogenus ATCC 35316] Length=115 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/100 (52%), Positives = 64/100 (64%), Gaps = 5/100 (5%) Query 14 PDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSGM 73 PDYRF+LANERT+LAW RTALG LAA V L QL P+ P R+VL ++L + A + + Sbjct 10 PDYRFSLANERTYLAWIRTALGFLAAGVGLDQLAPDFATPLIREVLALLLCLFAGVLAIY 69 Query 74 GLLRWQQADRAMRRHLPLPRHPTPGYL---AVGLCVVGVV 110 G LRW + ++AMR LP T G L AV L V GVV Sbjct 70 GYLRWLRNEKAMRLKQDLPY--TRGLLIISAVLLAVAGVV 107 >gi|218551211|ref|YP_002385003.1| hypothetical protein EFER_3976 [Escherichia fergusonii ATCC 35469] gi|218358753|emb|CAQ91410.1| conserved hypothetical protein; putative inner membrane protein [Escherichia fergusonii ATCC 35469] gi|324111578|gb|EGC05559.1| inner membrane protein yidH [Escherichia fergusonii B253] gi|325499488|gb|EGC97347.1| hypothetical protein ECD227_3585 [Escherichia fergusonii ECD227] Length=115 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 42/79 (54%), Positives = 53/79 (68%), Gaps = 0/79 (0%) Query 14 PDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSGM 73 PDYRF+LANERTFLAW RTALG LAA V L QL P+ P R+VL ++L + + + + Sbjct 10 PDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAPDFATPLIREVLALLLCLFSGVLAIY 69 Query 74 GLLRWQQADRAMRRHLPLP 92 G LRW ++AMR LP Sbjct 70 GYLRWLNNEKAMRLKEDLP 88 >gi|336247880|ref|YP_004591590.1| inner membrane protein YidH [Enterobacter aerogenes KCTC 2190] gi|334733936|gb|AEG96311.1| inner membrane protein YidH [Enterobacter aerogenes KCTC 2190] Length=115 Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 44/83 (54%), Positives = 53/83 (64%), Gaps = 0/83 (0%) Query 14 PDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSGM 73 PDYRF+LANERTFLAW RTALG LAA V L QL P+ P R+VL ++L + A + Sbjct 10 PDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAPDFATPLIREVLALLLCLFAGGLAVY 69 Query 74 GLLRWQQADRAMRRHLPLPRHPT 96 G LRW ++AMR LP T Sbjct 70 GYLRWLSNEKAMRLKQDLPYTRT 92 >gi|296100392|ref|YP_003610538.1| hypothetical protein ECL_00021 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295054851|gb|ADF59589.1| hypothetical protein ECL_00021 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length=115 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 42/79 (54%), Positives = 54/79 (69%), Gaps = 0/79 (0%) Query 14 PDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSGM 73 PDYRF+LANERT+LAW RTALG LAA V L QL P+ P R+VL ++L + A + + Sbjct 10 PDYRFSLANERTYLAWIRTALGFLAAGVGLDQLAPDFATPLIREVLALLLCLFAGVLAIY 69 Query 74 GLLRWQQADRAMRRHLPLP 92 G LRW + ++AMR LP Sbjct 70 GYLRWLRNEKAMRLKQDLP 88 >gi|152972588|ref|YP_001337734.1| hypothetical protein KPN_04084 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206580453|ref|YP_002235901.1| hypothetical protein KPK_0016 [Klebsiella pneumoniae 342] gi|238897191|ref|YP_002921939.1| hypothetical protein KP1_5461 [Klebsiella pneumoniae NTUH-K2044] 12 more sequence titles Length=115 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 43/83 (52%), Positives = 53/83 (64%), Gaps = 0/83 (0%) Query 14 PDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSGM 73 PDYRF+LANERTFLAW RTALG LAA V L QL P+ P R++L ++L + A + Sbjct 10 PDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAPDFATPLIREILALLLCLFAGGMAIY 69 Query 74 GLLRWQQADRAMRRHLPLPRHPT 96 G LRW ++AMR LP T Sbjct 70 GYLRWLNNEKAMRLKQDLPYTRT 92 >gi|157144320|ref|YP_001451639.1| hypothetical protein CKO_00024 [Citrobacter koseri ATCC BAA-895] gi|157081525|gb|ABV11203.1| hypothetical protein CKO_00024 [Citrobacter koseri ATCC BAA-895] Length=115 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 48/103 (47%), Positives = 67/103 (66%), Gaps = 0/103 (0%) Query 14 PDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSGM 73 PDYRF+LANERTFLAW RTALG LAA V L QL P+ P R++L ++L + A + Sbjct 10 PDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAPDFATPVIRELLALLLCLFAGGLAIY 69 Query 74 GLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVV 116 G LRW + ++AMR LP + +++ L +V V+ +ALV+ Sbjct 70 GYLRWLRNEKAMRLKEDLPYTHSLMIISLMLMIVAVIVMALVL 112 >gi|111027057|ref|YP_709035.1| hypothetical protein RHA1_ro11230 [Rhodococcus jostii RHA1] gi|110825596|gb|ABH00877.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=129 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 50/104 (49%), Positives = 61/104 (59%), Gaps = 2/104 (1%) Query 13 EPDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSG 72 PDYRFTLANERTFL+W RTAL L+AA VA+VQ VP T R LG L L S Sbjct 22 HPDYRFTLANERTFLSWVRTALALMAAGVAVVQFVPGPT--AIRHGLGFALISLGGALSA 79 Query 73 MGLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVV 116 + W++ +RAMR LP P P +A L + + AL L+V Sbjct 80 VSYTHWERNERAMRLGEQLPYSPMPRLVAAMLALGSLAALVLIV 123 >gi|72160575|ref|YP_288232.1| hypothetical protein Tfu_0171 [Thermobifida fusca YX] gi|71914307|gb|AAZ54209.1| probable conserved membrane protein [Thermobifida fusca YX] Length=124 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/116 (48%), Positives = 73/116 (63%), Gaps = 3/116 (2%) Query 5 SNDTATDVEPDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLA 64 +ND EPDYRFTLANERTFLAW RTAL L+A AVA++ LVP G + +G+ LA Sbjct 11 ANDGGDGKEPDYRFTLANERTFLAWIRTALALVAGAVAVLHLVPLRWHGGTQLSVGLALA 70 Query 65 ILAILTSGMGLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVVAKAI 120 LA++ + +RW + RAMR PLP P P A+G +G++ LA+VV + Sbjct 71 ALAVVITCYAPIRWMRVQRAMRHDQPLPTTPLPLITALG---IGLICLAVVVGNYL 123 >gi|260595850|ref|YP_003208421.1| Inner membrane protein YidH [Cronobacter turicensis z3032] gi|260215027|emb|CBA26708.1| Inner membrane protein yidH [Cronobacter turicensis z3032] Length=115 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 41/79 (52%), Positives = 51/79 (65%), Gaps = 0/79 (0%) Query 14 PDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSGM 73 PDYRF+LANERTFLAW RTALG LAA V L QL P+ P R+ + ++L A + Sbjct 10 PDYRFSLANERTFLAWVRTALGFLAAGVGLDQLAPDFATPVVREAVSLLLCFFAGALAIY 69 Query 74 GLLRWQQADRAMRRHLPLP 92 G LRW + ++AMR LP Sbjct 70 GYLRWLRNEKAMRLKAELP 88 >gi|323975256|gb|EGB70360.1| inner membrane protein yidH [Escherichia coli TW10509] Length=115 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 48/103 (47%), Positives = 66/103 (65%), Gaps = 0/103 (0%) Query 14 PDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSGM 73 PDYRF+LANERTFLAW RTALG LAA V L QL P+ P R++L ++L + + + Sbjct 10 PDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAPDFATPVIRELLALLLCLFSGGLAMY 69 Query 74 GLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVV 116 G LRW + ++AMR LP + ++V L VV V+ + LV+ Sbjct 70 GYLRWLRNEKAMRLKEDLPYTNSLLIISVILMVVAVIVMGLVL 112 >gi|156936061|ref|YP_001439977.1| hypothetical protein ESA_03955 [Cronobacter sakazakii ATCC BAA-894] gi|156534315|gb|ABU79141.1| hypothetical protein ESA_03955 [Cronobacter sakazakii ATCC BAA-894] Length=127 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 41/79 (52%), Positives = 51/79 (65%), Gaps = 0/79 (0%) Query 14 PDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSGM 73 PDYRF+LANERTFLAW RTALG LAA V L QL P+ P R+ + ++L A + Sbjct 22 PDYRFSLANERTFLAWVRTALGFLAAGVGLDQLAPDFATPVVREAVSLLLCFFAGALAIY 81 Query 74 GLLRWQQADRAMRRHLPLP 92 G LRW + ++AMR LP Sbjct 82 GYLRWLRNEKAMRLKAALP 100 >gi|326330929|ref|ZP_08197229.1| inner membrane protein YidH [Nocardioidaceae bacterium Broad-1] gi|325951287|gb|EGD43327.1| inner membrane protein YidH [Nocardioidaceae bacterium Broad-1] Length=124 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/99 (53%), Positives = 61/99 (62%), Gaps = 3/99 (3%) Query 13 EPDYRFTLANERTFLAWQRTALGLLAAAVALVQL-VPELTIPGARQVLGVVLAILAILTS 71 EPD RFTLANERTFLAW RT LGLLA AVAL VP T G R + VL + AIL + Sbjct 21 EPDPRFTLANERTFLAWARTVLGLLAGAVALHSFRVP--TAEGVRVGVIAVLVLTAILCT 78 Query 72 GMGLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVV 110 ++RW + +RAMR PLP LA L V+GV+ Sbjct 79 VFAMVRWARVERAMRERRPLPAFSAGFILAGALLVIGVL 117 >gi|281180734|dbj|BAI57064.1| conserved hypothetical protein [Escherichia coli SE15] gi|333971865|gb|AEG38670.1| Hypothetical protein ECNA114_3830 [Escherichia coli NA114] Length=115 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/103 (46%), Positives = 66/103 (65%), Gaps = 0/103 (0%) Query 14 PDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSGM 73 PDYRF+LANERTFLAW RTALG LAA V L QL P+ P R++L ++L + + + Sbjct 10 PDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAPDFATPVIRELLALLLCLFSGGLAMY 69 Query 74 GLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVV 116 G LRW + ++AMR LP + +++ L VV V+ + LV+ Sbjct 70 GYLRWLRNEKAMRLKEDLPYTNSLFIISLILMVVAVIVMGLVL 112 >gi|226309291|ref|YP_002769251.1| hypothetical protein RER_58040 [Rhodococcus erythropolis PR4] gi|226188408|dbj|BAH36512.1| conserved hypothetical membrane protein [Rhodococcus erythropolis PR4] Length=112 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 45/106 (43%), Positives = 62/106 (59%), Gaps = 3/106 (2%) Query 7 DTATDVEPDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAIL 66 D A + EPDYRFTLANERTFLAW RTA GLLA VA+ QL+ AR + + + Sbjct 4 DRADENEPDYRFTLANERTFLAWIRTAFGLLAGGVAIDQLIAP---SPARTAISIACLSM 60 Query 67 AILTSGMGLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVAL 112 A + + RW++ RAMR+ PLP+ +A ++ V+A+ Sbjct 61 ATVLATGAYTRWRRVQRAMRQDKPLPKSALMPAIACASGMIAVIAM 106 >gi|331649505|ref|ZP_08350591.1| inner membrane protein YidH [Escherichia coli M605] gi|331042003|gb|EGI14147.1| inner membrane protein YidH [Escherichia coli M605] Length=135 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 47/103 (46%), Positives = 66/103 (65%), Gaps = 0/103 (0%) Query 14 PDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSGM 73 PDYRF+LANERTFLAW RTALG LAA V L QL P+ P R++L ++L + + + Sbjct 30 PDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAPDFATPVIRELLALLLCLFSGGLAMY 89 Query 74 GLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVV 116 G LRW + ++AMR LP + +++ L VV V+ + LV+ Sbjct 90 GYLRWLRNEKAMRLKEDLPYTNSLFIISLILMVVAVIVMGLVL 132 >gi|222035395|emb|CAP78140.1| Inner membrane protein yidH [Escherichia coli LF82] gi|312948248|gb|ADR29075.1| hypothetical protein NRG857_18330 [Escherichia coli O83:H1 str. NRG 857C] Length=115 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 46/103 (45%), Positives = 66/103 (65%), Gaps = 0/103 (0%) Query 14 PDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSGM 73 PDYRF+LANERTFLAW RTALG LAA V L QL P+ P R++L ++L + + + Sbjct 10 PDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAPDFATPVIRELLALLLCLFSGGLAMY 69 Query 74 GLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVV 116 G LRW + ++AMR LP + +++ L +V V+ + LV+ Sbjct 70 GYLRWLRNEKAMRLKEDLPYTNSLFIISLILMIVAVIVMGLVL 112 >gi|16767091|ref|NP_462706.1| inner membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62182297|ref|YP_218714.1| putative inner membrane protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161616912|ref|YP_001590877.1| hypothetical protein SPAB_04733 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] 81 more sequence titles Length=115 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 47/103 (46%), Positives = 66/103 (65%), Gaps = 0/103 (0%) Query 14 PDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSGM 73 PDYRF+LANERTFLAW RT+LG LAA V L QL P+ P R++L ++L + A + Sbjct 10 PDYRFSLANERTFLAWIRTSLGFLAAGVGLDQLAPDFATPVIRELLALLLCLFAGGLAIY 69 Query 74 GLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVV 116 G LRW + ++AMR LP + ++V L +V V+ + LV+ Sbjct 70 GYLRWLRNEKAMRLKEDLPYTHSLLIISVILMIVAVIVMGLVL 112 >gi|170018084|ref|YP_001723038.1| isocitrate dehydrogenase [Escherichia coli ATCC 8739] gi|188491952|ref|ZP_02999222.1| conserved hypothetical protein [Escherichia coli 53638] gi|194435859|ref|ZP_03067962.1| conserved hypothetical protein [Escherichia coli 101-1] 13 more sequence titles Length=115 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 47/103 (46%), Positives = 66/103 (65%), Gaps = 0/103 (0%) Query 14 PDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSGM 73 PDYRF+LANERTFLAW RTALG LAA V L QL P+ P R++L ++L + + + Sbjct 10 PDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAPDFATPVIRELLALLLCLFSGGLAMY 69 Query 74 GLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVV 116 G LRW + ++AMR LP + +++ L VV V+ + LV+ Sbjct 70 GYLRWLRNEKAMRLKEDLPYTNSLLIISLILMVVAVIVMGLVL 112 >gi|15804276|ref|NP_290315.1| hypothetical protein Z5171 [Escherichia coli O157:H7 EDL933] gi|15833871|ref|NP_312644.1| hypothetical protein ECs4617 [Escherichia coli O157:H7 str. Sakai] gi|16131546|ref|NP_418132.1| inner membrane protein, DUF202 family [Escherichia coli str. K-12 substr. MG1655] 237 more sequence titles Length=115 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 47/103 (46%), Positives = 66/103 (65%), Gaps = 0/103 (0%) Query 14 PDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSGM 73 PDYRF+LANERTFLAW RTALG LAA V L QL P+ P R++L ++L + + + Sbjct 10 PDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAPDFATPVIRELLALLLCLFSGGLAMY 69 Query 74 GLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVV 116 G LRW + ++AMR LP + +++ L VV V+ + LV+ Sbjct 70 GYLRWLRNEKAMRLKEDLPYTNSLLIISLILMVVAVIVMGLVL 112 >gi|283787623|ref|YP_003367488.1| hypothetical protein ROD_40501 [Citrobacter rodentium ICC168] gi|282951077|emb|CBG90755.1| putative membrane protein [Citrobacter rodentium ICC168] Length=115 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 47/103 (46%), Positives = 66/103 (65%), Gaps = 0/103 (0%) Query 14 PDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSGM 73 PDYRF+LANERTFLAW RTALG LAA V L QL PE P R++L ++L + + + Sbjct 10 PDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAPEFATPVIRELLALLLCLFSGGLAIY 69 Query 74 GLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVV 116 G LRW + ++AMR LP + +++ L +V V+ + LV+ Sbjct 70 GYLRWLRNEKAMRLKEDLPYTHSLLIVSLILMIVAVIVMTLVL 112 >gi|91213204|ref|YP_543190.1| hypothetical protein UTI89_C4232 [Escherichia coli UTI89] gi|110644024|ref|YP_671754.1| hypothetical protein ECP_3882 [Escherichia coli 536] gi|117625957|ref|YP_859280.1| hypothetical protein APECO1_2776 [Escherichia coli APEC O1] 9 more sequence titles Length=135 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 47/103 (46%), Positives = 66/103 (65%), Gaps = 0/103 (0%) Query 14 PDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSGM 73 PDYRF+LANERTFLAW RTALG LAA V L QL P+ P R++L ++L + + + Sbjct 30 PDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAPDFATPVIRELLALLLCLFSGGLAMY 89 Query 74 GLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVV 116 G LRW + ++AMR LP + +++ L VV V+ + LV+ Sbjct 90 GYLRWLRNEKAMRLKEDLPYTNSLLIISLILMVVAVIVMGLVL 132 >gi|333920652|ref|YP_004494233.1| hypothetical protein AS9A_2985 [Amycolicicoccus subflavus DQS3-9A1] gi|333482872|gb|AEF41432.1| Hypothetical membrane protein [Amycolicicoccus subflavus DQS3-9A1] Length=115 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 44/111 (40%), Positives = 65/111 (59%), Gaps = 5/111 (4%) Query 14 PDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSGM 73 PD RFTLA+ERTFLAW RT+LGL+ A +A++ +VP + R V+G+ + L+ L + Sbjct 7 PDERFTLASERTFLAWMRTSLGLMVAGIAVIHVVPTFSTQTVRTVIGLAMVSLSCLAAAE 66 Query 74 GLLRWQQADRAM---RRHLPLPRHPTPGYLAVGLCVVGVVALALVVAKAIT 121 G RW+Q +A+ +P PR T + V + VGV L + A +T Sbjct 67 GFRRWRQVAKALESGEEEMPGPR--TLAIITVAIVAVGVATLIAIGADLVT 115 >gi|116668642|ref|YP_829575.1| hypothetical protein Arth_0074 [Arthrobacter sp. FB24] gi|116608751|gb|ABK01475.1| protein of unknown function DUF202 [Arthrobacter sp. FB24] Length=133 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 53/129 (42%), Positives = 70/129 (55%), Gaps = 13/129 (10%) Query 3 DDSNDTATD-------------VEPDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPE 49 +DSN A D EPD RFTLANERTFLAW RT+L LLA VA+ + E Sbjct 3 EDSNTGAPDPRGRLTSRILRGGTEPDPRFTLANERTFLAWIRTSLALLAGGVAVEAFMAE 62 Query 50 LTIPGARQVLGVVLAILAILTSGMGLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGV 109 L P R+ + V+L +LA+L G RW +RAMRR P+P LA+G +V Sbjct 63 LLGPELRKTISVLLLVLALLIGGGSFFRWVNVERAMRRKAPMPLPLMAPVLAIGGALVAA 122 Query 110 VALALVVAK 118 + + V+ + Sbjct 123 IMVVFVIVR 131 >gi|26250421|ref|NP_756461.1| hypothetical protein c4600 [Escherichia coli CFT073] gi|26110851|gb|AAN83035.1|AE016769_150 Hypothetical protein yidH [Escherichia coli CFT073] Length=135 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 47/103 (46%), Positives = 66/103 (65%), Gaps = 0/103 (0%) Query 14 PDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSGM 73 PDYRF+LANERTFLAW RTALG LAA V L QL P+ P R++L ++L + + + Sbjct 30 PDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAPDFATPVIRELLALLLCLFSGGLAMY 89 Query 74 GLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVV 116 G LRW + ++AMR LP + +++ L VV V+ + LV+ Sbjct 90 GYLRWLRNEKAMRLKEDLPYTNSLLIISLILMVVAVIVMGLVL 132 >gi|119717153|ref|YP_924118.1| hypothetical protein Noca_2929 [Nocardioides sp. JS614] gi|119537814|gb|ABL82431.1| protein of unknown function DUF202 [Nocardioides sp. JS614] Length=130 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/108 (52%), Positives = 68/108 (63%), Gaps = 2/108 (1%) Query 14 PDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSGM 73 PDYRFTLANERTFLAW RTAL L+AA +ALVQ P AR LG++L +L L +G Sbjct 24 PDYRFTLANERTFLAWVRTALALMAAGIALVQYGPGPA--AARHALGLLLIVLGGLLAGA 81 Query 74 GLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVVAKAIT 121 +W++A+RAMR LPR P P +A L V VAL L V + T Sbjct 82 SYQQWERAERAMRVGATLPRSPVPRLVAGVLTVAAAVALVLTVIEMAT 129 >gi|161505668|ref|YP_001572780.1| hypothetical protein SARI_03844 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867015|gb|ABX23638.1| hypothetical protein SARI_03844 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length=115 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 46/103 (45%), Positives = 66/103 (65%), Gaps = 0/103 (0%) Query 14 PDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSGM 73 PDYRF+LANERTFLAW RT+LG LAA V L QL P+ P R++L ++L + A + Sbjct 10 PDYRFSLANERTFLAWIRTSLGFLAAGVGLDQLAPDFATPVIRELLALLLCLFAGGLAIY 69 Query 74 GLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVV 116 G LRW + ++AMR +P + ++V L +V V+ + LV+ Sbjct 70 GYLRWLRNEKAMRLKEDMPYTHSLLIISVILMIVAVIVMGLVL 112 >gi|237729010|ref|ZP_04559491.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226909632|gb|EEH95550.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length=115 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 48/103 (47%), Positives = 65/103 (64%), Gaps = 0/103 (0%) Query 14 PDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSGM 73 PDYRF+LANERTFLAW RTALG LAA V L QL P+ P R+ L ++L + A + Sbjct 10 PDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAPDFATPVIREALALLLCLFAGGLAIY 69 Query 74 GLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVV 116 G LRW + ++AMR LP + ++V L +V V+ + LV+ Sbjct 70 GYLRWLRNEKAMRLKEDLPYTHSLLIISVMLTIVAVIVMTLVL 112 >gi|283836106|ref|ZP_06355847.1| hypothetical protein CIT292_10526 [Citrobacter youngae ATCC 29220] gi|291068294|gb|EFE06403.1| inner membrane protein YidH [Citrobacter youngae ATCC 29220] Length=115 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 48/103 (47%), Positives = 65/103 (64%), Gaps = 0/103 (0%) Query 14 PDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSGM 73 PDYRF+LANERTFLAW RTALG LAA V L QL P+ P R++L ++L + A + Sbjct 10 PDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAPDFATPVIRELLALLLCLFAGGLAIY 69 Query 74 GLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVV 116 G LRW + +RAMR LP + +++ L V V+ + LV+ Sbjct 70 GYLRWLRNERAMRLKEDLPYTHSLLIISLILMSVAVIVMGLVL 112 >gi|332996072|gb|EGK15699.1| hypothetical protein SFVA6_4733 [Shigella flexneri VA-6] Length=115 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/103 (45%), Positives = 65/103 (64%), Gaps = 0/103 (0%) Query 14 PDYRFTLANERTFLAWQRTALGLLAAAVALVQLVPELTIPGARQVLGVVLAILAILTSGM 73 PDYRF+LANERTFL W RTALG LAA V L QL P+ P R++L ++L + + + Sbjct 10 PDYRFSLANERTFLTWIRTALGFLAAGVGLDQLAPDFATPVIRELLALLLCLFSGGLAMY 69 Query 74 GLLRWQQADRAMRRHLPLPRHPTPGYLAVGLCVVGVVALALVV 116 G LRW + ++AMR LP + +++ L VV V+ + LV+ Sbjct 70 GYLRWLRNEKAMRLKEDLPYTNSLLIISLILMVVAVIVMGLVL 112 Lambda K H 0.325 0.138 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 127525862838 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40