BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2273 Length=109 Score E Sequences producing significant alignments: (Bits) Value gi|15609410|ref|NP_216789.1| transmembrane protein [Mycobacteriu... 213 6e-54 gi|306808589|ref|ZP_07445257.1| conserved membrane protein [Myco... 212 2e-53 gi|306785055|ref|ZP_07423377.1| conserved membrane protein [Myco... 211 2e-53 gi|254232418|ref|ZP_04925745.1| hypothetical protein TBCG_02219 ... 159 2e-37 gi|240170117|ref|ZP_04748776.1| putative transmembrane protein [... 140 9e-32 gi|183983359|ref|YP_001851650.1| transmembrane protein [Mycobact... 125 3e-27 gi|289574961|ref|ZP_06455188.1| transmembrane protein [Mycobacte... 122 2e-26 gi|118616976|ref|YP_905308.1| transmembrane protein [Mycobacteri... 121 3e-26 gi|296166164|ref|ZP_06848608.1| transmembrane protein [Mycobacte... 121 4e-26 gi|118473401|ref|YP_885622.1| hypothetical protein MSMEG_1230 [M... 56.6 1e-06 gi|251791525|ref|YP_003006246.1| hypothetical protein Dd1591_396... 49.7 1e-04 gi|54026107|ref|YP_120349.1| hypothetical protein nfa41360 [Noca... 44.7 0.005 gi|317509082|ref|ZP_07966711.1| beta-3 adrenergic receptor prote... 44.3 0.005 gi|324999116|ref|ZP_08120228.1| hypothetical protein PseP1_10146... 44.3 0.006 gi|182439607|ref|YP_001827326.1| hypothetical protein SGR_5814 [... 44.3 0.006 gi|297198564|ref|ZP_06915961.1| conserved hypothetical protein [... 44.3 0.007 gi|302550345|ref|ZP_07302687.1| conserved hypothetical protein [... 43.1 0.015 gi|242237610|ref|YP_002985791.1| hypothetical protein Dd703_0150... 42.0 0.030 gi|269126956|ref|YP_003300326.1| hypothetical protein Tcur_2741 ... 41.6 0.038 gi|227112297|ref|ZP_03825953.1| hypothetical protein PcarbP_0500... 40.8 0.066 gi|108802276|ref|YP_642473.1| hypothetical protein Mmcs_5316 [My... 40.8 0.071 gi|50121925|ref|YP_051092.1| hypothetical protein ECA3001 [Pecto... 40.4 0.087 gi|257056607|ref|YP_003134439.1| hypothetical protein Svir_26240... 39.3 0.17 gi|302518171|ref|ZP_07270513.1| predicted protein [Streptomyces ... 39.3 0.20 gi|318081921|ref|ZP_07989230.1| hypothetical protein SSA3_35662 ... 39.3 0.22 gi|161505787|ref|YP_001572899.1| hypothetical protein SARI_03963... 39.3 0.22 gi|312195521|ref|YP_004015582.1| hypothetical protein FraEuI1c_1... 38.5 0.35 gi|284028921|ref|YP_003378852.1| hypothetical protein Kfla_0948 ... 38.5 0.36 gi|255325742|ref|ZP_05366836.1| putative inner membrane protein ... 38.1 0.39 gi|300783765|ref|YP_003764056.1| hypothetical protein AMED_1844 ... 38.1 0.43 gi|294811750|ref|ZP_06770393.1| Hypothetical protein SCLAV_0915 ... 38.1 0.49 gi|259508202|ref|ZP_05751102.1| integral membrane protein [Coryn... 37.7 0.52 gi|148274022|ref|YP_001223583.1| hypothetical protein CMM_2838 [... 37.7 0.52 gi|325964712|ref|YP_004242618.1| hypothetical protein Asphe3_337... 37.4 0.70 gi|145221572|ref|YP_001132250.1| hypothetical protein Mflv_0979 ... 37.4 0.73 gi|315446693|ref|YP_004079572.1| hypothetical protein Mspyr1_521... 37.4 0.77 gi|254392404|ref|ZP_05007586.1| hypothetical protein SSCG_04781 ... 37.4 0.84 gi|302533561|ref|ZP_07285903.1| predicted protein [Streptomyces ... 37.4 0.84 gi|257055331|ref|YP_003133163.1| hypothetical protein Svir_12890... 37.4 0.84 gi|260578168|ref|ZP_05846088.1| membrane protein [Corynebacteriu... 37.0 0.90 gi|253689118|ref|YP_003018308.1| hypothetical protein PC1_2742 [... 37.0 0.97 gi|290961629|ref|YP_003492811.1| hypothetical protein SCAB_72871... 36.6 1.1 gi|227548565|ref|ZP_03978614.1| conserved hypothetical protein [... 36.6 1.2 gi|195940892|ref|ZP_03086274.1| hypothetical protein Escherichco... 36.6 1.3 gi|170783254|ref|YP_001711588.1| hypothetical protein CMS_2958 [... 36.6 1.3 gi|261820824|ref|YP_003258930.1| hypothetical protein Pecwa_1526... 36.6 1.3 gi|300780197|ref|ZP_07090053.1| conserved hypothetical protein [... 36.2 1.5 gi|338778402|gb|EGP42876.1| hypothetical protein AXXA_28930 [Ach... 36.2 1.5 gi|334121974|ref|ZP_08496017.1| inner membrane protein YidG [Ent... 36.2 1.6 gi|120406787|ref|YP_956616.1| hypothetical protein Mvan_5845 [My... 36.2 1.7 >gi|15609410|ref|NP_216789.1| transmembrane protein [Mycobacterium tuberculosis H37Rv] gi|15841766|ref|NP_336803.1| hypothetical protein MT2334 [Mycobacterium tuberculosis CDC1551] gi|31793452|ref|NP_855945.1| transmembrane protein [Mycobacterium bovis AF2122/97] 70 more sequence titles Length=109 Score = 213 bits (543), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 108/109 (99%), Positives = 109/109 (100%), Gaps = 0/109 (0%) Query 1 VNRHSTAASDRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAA 60 +NRHSTAASDRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAA Sbjct 1 MNRHSTAASDRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAA 60 Query 61 SCCYVIALQRQRALSHRPLPARITPRGQVHILATAVLVLMVVTAFAQLL 109 SCCYVIALQRQRALSHRPLPARITPRGQVHILATAVLVLMVVTAFAQLL Sbjct 61 SCCYVIALQRQRALSHRPLPARITPRGQVHILATAVLVLMVVTAFAQLL 109 >gi|306808589|ref|ZP_07445257.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007] gi|306968415|ref|ZP_07481076.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009] gi|308345082|gb|EFP33933.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007] gi|308353932|gb|EFP42783.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009] Length=109 Score = 212 bits (539), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 107/109 (99%), Positives = 108/109 (99%), Gaps = 0/109 (0%) Query 1 VNRHSTAASDRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAA 60 +NRHSTAASDRGLQAERTTLAWTRT FALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAA Sbjct 1 MNRHSTAASDRGLQAERTTLAWTRTTFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAA 60 Query 61 SCCYVIALQRQRALSHRPLPARITPRGQVHILATAVLVLMVVTAFAQLL 109 SCCYVIALQRQRALSHRPLPARITPRGQVHILATAVLVLMVVTAFAQLL Sbjct 61 SCCYVIALQRQRALSHRPLPARITPRGQVHILATAVLVLMVVTAFAQLL 109 >gi|306785055|ref|ZP_07423377.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003] gi|308330270|gb|EFP19121.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003] Length=109 Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 107/109 (99%), Positives = 109/109 (100%), Gaps = 0/109 (0%) Query 1 VNRHSTAASDRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAA 60 +NRHSTAASDRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAA Sbjct 1 MNRHSTAASDRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAA 60 Query 61 SCCYVIALQRQRALSHRPLPARITPRGQVHILATAVLVLMVVTAFAQLL 109 SCCYVIALQRQRALSHRPLPARITPRGQVHILATAVLVL+VVTAFAQLL Sbjct 61 SCCYVIALQRQRALSHRPLPARITPRGQVHILATAVLVLIVVTAFAQLL 109 >gi|254232418|ref|ZP_04925745.1| hypothetical protein TBCG_02219 [Mycobacterium tuberculosis C] gi|124601477|gb|EAY60487.1| hypothetical protein TBCG_02219 [Mycobacterium tuberculosis C] Length=155 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 82/91 (91%), Positives = 84/91 (93%), Gaps = 1/91 (1%) Query 1 VNRHSTAASDRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAA 60 +NRHSTAASDRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAA Sbjct 1 MNRHSTAASDRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAA 60 Query 61 SCCYVIALQRQRALSHRPLPA-RITPRGQVH 90 SCCYVIALQRQRALSHRPLP +PR H Sbjct 61 SCCYVIALQRQRALSHRPLPGTNHSPRPGPH 91 >gi|240170117|ref|ZP_04748776.1| putative transmembrane protein [Mycobacterium kansasii ATCC 12478] Length=110 Score = 140 bits (352), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 78/101 (78%), Positives = 82/101 (82%), Gaps = 1/101 (0%) Query 9 SDRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAASCCYVIAL 68 SDRGLQAERTTLAWTRT+FALLVNGVLLTLK+ G DG A LIPAGLA AASC Y IA Sbjct 11 SDRGLQAERTTLAWTRTSFALLVNGVLLTLKNLHGHDGAAALIPAGLAALAASCGYAIAW 70 Query 69 QRQRALSHRPLPARITPRGQVHILATAVLVLMVVTAFAQLL 109 QRQR LS RP RIT R QV+I+ TAVLVLMVVTA AQLL Sbjct 71 QRQRTLS-RPRQTRITARRQVYIVGTAVLVLMVVTAAAQLL 110 >gi|183983359|ref|YP_001851650.1| transmembrane protein [Mycobacterium marinum M] gi|183176685|gb|ACC41795.1| conserved transmembrane protein [Mycobacterium marinum M] Length=111 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/108 (72%), Positives = 85/108 (79%), Gaps = 0/108 (0%) Query 2 NRHSTAASDRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAAS 61 + + A+DRGLQAERTTLAWTRT+FALLVNGVLLT KD Q G AGL+PAGLA AAS Sbjct 4 SSETAQAADRGLQAERTTLAWTRTSFALLVNGVLLTTKDVQAHAGLAGLVPAGLAALAAS 63 Query 62 CCYVIALQRQRALSHRPLPARITPRGQVHILATAVLVLMVVTAFAQLL 109 C Y+IA QRQR L RP P RIT R QV+I+ AVLVLMVVTAFAQLL Sbjct 64 CGYIIAYQRQRTLRRRPRPQRITARRQVYIVGLAVLVLMVVTAFAQLL 111 >gi|289574961|ref|ZP_06455188.1| transmembrane protein [Mycobacterium tuberculosis K85] gi|289539392|gb|EFD43970.1| transmembrane protein [Mycobacterium tuberculosis K85] Length=62 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 61/62 (99%), Positives = 62/62 (100%), Gaps = 0/62 (0%) Query 1 VNRHSTAASDRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAA 60 +NRHSTAASDRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAA Sbjct 1 MNRHSTAASDRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAA 60 Query 61 SC 62 SC Sbjct 61 SC 62 >gi|118616976|ref|YP_905308.1| transmembrane protein [Mycobacterium ulcerans Agy99] gi|118569086|gb|ABL03837.1| conserved transmembrane protein [Mycobacterium ulcerans Agy99] Length=199 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 77/102 (76%), Positives = 82/102 (81%), Gaps = 0/102 (0%) Query 8 ASDRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAASCCYVIA 67 A+DRGLQAERTTLAWTRT+FALLVNGVLLT KD Q G AGL+PAGLA AASC Y IA Sbjct 10 AADRGLQAERTTLAWTRTSFALLVNGVLLTTKDVQAHAGLAGLVPAGLAALAASCGYTIA 69 Query 68 LQRQRALSHRPLPARITPRGQVHILATAVLVLMVVTAFAQLL 109 QRQR L RP P RIT R QV+I+ AVLVLMVVTAFAQLL Sbjct 70 YQRQRTLRRRPRPQRITARRQVYIVGLAVLVLMVVTAFAQLL 111 >gi|296166164|ref|ZP_06848608.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898488|gb|EFG78050.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=106 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 61/105 (59%), Positives = 77/105 (74%), Gaps = 0/105 (0%) Query 5 STAASDRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAASCCY 64 S +DRG QAERTTLAWTRT+FA L NG LL +++ G+ PA L+PAGLAGA A + Sbjct 2 SGTTADRGDQAERTTLAWTRTSFAFLANGALLMIRNLHGSVRPADLVPAGLAGAVALGTF 61 Query 65 VIALQRQRALSHRPLPARITPRGQVHILATAVLVLMVVTAFAQLL 109 +IA+ RQ L RPLP R+TPR QV+++ TAVL L+VVT+ QLL Sbjct 62 LIAVHRQHTLQQRPLPRRLTPRHQVYVIGTAVLALIVVTSVGQLL 106 >gi|118473401|ref|YP_885622.1| hypothetical protein MSMEG_1230 [Mycobacterium smegmatis str. MC2 155] gi|118174688|gb|ABK75584.1| hypothetical protein MSMEG_1230 [Mycobacterium smegmatis str. MC2 155] Length=107 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/106 (39%), Positives = 56/106 (53%), Gaps = 19/106 (17%) Query 8 ASDRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAASCCYVI- 66 A DRGLQAERT LAWTRTA A+ +GVL+ L+D+ D P L+ A + + Sbjct 7 AEDRGLQAERTALAWTRTALAIAASGVLVLLRDSHIQDDPGRLVVVAAVAVVALGVFALG 66 Query 67 ALQRQRALSHRPLPARITPRGQ----------VHILATAVLVLMVV 102 A +R+R L+H PRG V ILA +LV++ + Sbjct 67 AHRRRRLLAH--------PRGNAGRRYIRAAGVTILAEGLLVMIYL 104 >gi|251791525|ref|YP_003006246.1| hypothetical protein Dd1591_3967 [Dickeya zeae Ech1591] gi|247540146|gb|ACT08767.1| conserved hypothetical protein [Dickeya zeae Ech1591] Length=110 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/99 (40%), Positives = 50/99 (51%), Gaps = 5/99 (5%) Query 10 DRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAASCCYVIALQ 69 D GLQ ERT LAW+RTAF LL+N VLL LK P L L Y+ + Sbjct 11 DPGLQPERTRLAWSRTAFVLLINSVLL-LKAGSMKSQPLMLATGLLLLMMTLITYLWSRL 69 Query 70 RQRALSHRPLPARITPRGQVHILATAVLVLMVVTAFAQL 108 R RAL H P TP Q + +++ ++VTA + L Sbjct 70 RLRALRHSGYPC--TP--QSMCMMRLLMLTVIVTALSLL 104 >gi|54026107|ref|YP_120349.1| hypothetical protein nfa41360 [Nocardia farcinica IFM 10152] gi|54017615|dbj|BAD58985.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=106 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/79 (41%), Positives = 42/79 (54%), Gaps = 6/79 (7%) Query 10 DRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAASCCYVIALQ 69 D GL AERT LAW RTA A V V+ L + +G AGL+P + + ++A + Sbjct 5 DTGLAAERTALAWRRTALAATV--VVALLAEHAIGNGGAGLLPLAVGVVPLAVVAIVAYR 62 Query 70 RQRALSH----RPLPARIT 84 R R L H R PAR+T Sbjct 63 RARLLRHAGPERVRPARVT 81 >gi|317509082|ref|ZP_07966711.1| beta-3 adrenergic receptor protein [Segniliparus rugosus ATCC BAA-974] gi|316252611|gb|EFV12052.1| beta-3 adrenergic receptor protein [Segniliparus rugosus ATCC BAA-974] Length=101 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/97 (36%), Positives = 48/97 (50%), Gaps = 2/97 (2%) Query 11 RGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGL-AGAAASCCYVIALQ 69 GL AER LAW+RT+ A+ N LL L++ GP G A L A C+ + Sbjct 5 NGLAAERVVLAWSRTSLAVFGNAGLLALREWTCRPGPVGAFAALLVVMCVAGFCHAALRR 64 Query 70 RQRALSHRPLPARITPRGQVHILATAVLVLMVVTAFA 106 + RP PA +P+ +V ++ VL L +V A A Sbjct 65 GRALRRARPSPAA-SPKREVRLVGGCVLALSLVCALA 100 >gi|324999116|ref|ZP_08120228.1| hypothetical protein PseP1_10146 [Pseudonocardia sp. P1] Length=114 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 38/103 (37%), Positives = 53/103 (52%), Gaps = 4/103 (3%) Query 10 DRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAASCCYVIALQ 69 D GLQ ERT LAW RTA + L G L+ ++ G G L+ G+ G A + ++ + Sbjct 11 DAGLQPERTGLAWRRTAIS-LAAGSLVAMRILPGDSGDLLLLLPGVVGFAVAVGLLVMTE 69 Query 70 RQRALSHRPLPARITP--RGQVHILATAV-LVLMVVTAFAQLL 109 R+ HR L + TP G V +L TA+ VL V A +L Sbjct 70 RRYLHVHRTLASDHTPLVGGGVSMLCTALACVLFAVAALGFVL 112 >gi|182439607|ref|YP_001827326.1| hypothetical protein SGR_5814 [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780272|ref|ZP_08239537.1| hypothetical protein SACT1_6147 [Streptomyces cf. griseus XylebKG-1] gi|178468123|dbj|BAG22643.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660605|gb|EGE45451.1| hypothetical protein SACT1_6147 [Streptomyces griseus XylebKG-1] Length=104 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/84 (40%), Positives = 43/84 (52%), Gaps = 3/84 (3%) Query 5 STAASDRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAASCCY 64 + A+ D GLQ ERT LAW RT + V +L + G PA LI L+ AA Sbjct 3 AAASRDPGLQPERTRLAWRRTTLSATVVALLAVRQALHGGVTPAALIAVALSAAAWLGFL 62 Query 65 VIALQRQ-RALSHRPLPARITPRG 87 V+A +R R + RP P + PRG Sbjct 63 VVAHRRMLRMEAARPEP--LAPRG 84 >gi|297198564|ref|ZP_06915961.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] gi|297147128|gb|EDY59506.2| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] Length=107 Score = 44.3 bits (103), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/77 (39%), Positives = 36/77 (47%), Gaps = 0/77 (0%) Query 10 DRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAASCCYVIALQ 69 D GLQ ERT LAW RT + V+ VL G PA L+ L A +A + Sbjct 10 DPGLQPERTRLAWRRTTLSGTVSAVLAVKTALHGGPSPAALVACALCCALWLGFLYLAHR 69 Query 70 RQRALSHRPLPARITPR 86 R R LS P +TPR Sbjct 70 RIRTLSASDTPPTLTPR 86 >gi|302550345|ref|ZP_07302687.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] gi|302467963|gb|EFL31056.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] Length=105 Score = 43.1 bits (100), Expect = 0.015, Method: Compositional matrix adjust. Identities = 31/83 (38%), Positives = 38/83 (46%), Gaps = 12/83 (14%) Query 10 DRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAASCCYV---- 65 D GLQ ERT LAW RT ++ V VL G G+I A A CC + Sbjct 8 DPGLQPERTRLAWRRTTLSVTVAAVLAVKTALHGGVSAPGII------ACALCCVLWLGF 61 Query 66 --IALQRQRALSHRPLPARITPR 86 +A +R RAL+ P P PR Sbjct 62 LGVAHRRIRALASSPDPVAFAPR 84 >gi|242237610|ref|YP_002985791.1| hypothetical protein Dd703_0150 [Dickeya dadantii Ech703] gi|242129667|gb|ACS83969.1| conserved hypothetical protein [Dickeya dadantii Ech703] Length=105 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 28/72 (39%), Positives = 37/72 (52%), Gaps = 0/72 (0%) Query 12 GLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAASCCYVIALQRQ 71 GLQ ERT LAW+RTAF +L+N VLL + + P I L A L+ + Sbjct 12 GLQPERTRLAWSRTAFIMLINSVLLLRAGSTPSHPPLMAIGVFLLLATLMMYLWSRLRLR 71 Query 72 RALSHRPLPARI 83 A + PL AR+ Sbjct 72 HACASSPLSARM 83 >gi|269126956|ref|YP_003300326.1| hypothetical protein Tcur_2741 [Thermomonospora curvata DSM 43183] gi|268311914|gb|ACY98288.1| hypothetical protein Tcur_2741 [Thermomonospora curvata DSM 43183] Length=106 Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust. Identities = 27/58 (47%), Positives = 31/58 (54%), Gaps = 2/58 (3%) Query 10 DRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAASCCYVIA 67 D G Q ERT LAW RTA + NGVLLT GP L+ GL AAA ++ A Sbjct 8 DPGAQPERTVLAWRRTALLIAANGVLLT--RAAPTLGPVALVLGGLVAAAAVPVWLAA 63 >gi|227112297|ref|ZP_03825953.1| hypothetical protein PcarbP_05002 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length=106 Score = 40.8 bits (94), Expect = 0.066, Method: Compositional matrix adjust. Identities = 31/101 (31%), Positives = 55/101 (55%), Gaps = 7/101 (6%) Query 10 DRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAASCCYVIALQ 69 D GLQ +RT +AW+RT F +L+N LL + + D A L ++ V+A+ Sbjct 6 DPGLQPQRTGMAWSRTLFVMLINS-LLCFRLSMVNDSRVVFACAILLLCVSALMSVLAIL 64 Query 70 RQRALSH-RPLPARITPRGQVHILATAVLVLMVVTAFAQLL 109 R R +H +P+ +R++ G + + ++++ V+TA LL Sbjct 65 RYRFNAHCQPVLSRVS-HGLIVLTSSSI----VITALVLLL 100 >gi|108802276|ref|YP_642473.1| hypothetical protein Mmcs_5316 [Mycobacterium sp. MCS] gi|119871429|ref|YP_941381.1| hypothetical protein Mkms_5405 [Mycobacterium sp. KMS] gi|126438258|ref|YP_001073949.1| hypothetical protein Mjls_5695 [Mycobacterium sp. JLS] gi|108772695|gb|ABG11417.1| protein of unknown function DUF202 [Mycobacterium sp. MCS] gi|119697518|gb|ABL94591.1| protein of unknown function DUF202 [Mycobacterium sp. KMS] gi|126238058|gb|ABO01459.1| protein of unknown function DUF202 [Mycobacterium sp. JLS] Length=113 Score = 40.8 bits (94), Expect = 0.071, Method: Compositional matrix adjust. Identities = 26/73 (36%), Positives = 40/73 (55%), Gaps = 1/73 (1%) Query 7 AASDRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAASCCYVI 66 A + GL AERT L+W R++F LV G L+ L++ G GPA ++ A A A + Sbjct 5 APTKPGLPAERTLLSWERSSFGFLVGGALVLLRN-HGPLGPARMLLAITAALLALVVLAL 63 Query 67 ALQRQRALSHRPL 79 +R R + + P+ Sbjct 64 GYRRTRQIRNSPV 76 >gi|50121925|ref|YP_051092.1| hypothetical protein ECA3001 [Pectobacterium atrosepticum SCRI1043] gi|49612451|emb|CAG75901.1| putative membrane protein [Pectobacterium atrosepticum SCRI1043] Length=108 Score = 40.4 bits (93), Expect = 0.087, Method: Compositional matrix adjust. Identities = 23/63 (37%), Positives = 35/63 (56%), Gaps = 1/63 (1%) Query 10 DRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAASCCYVIALQ 69 D GLQ++RT +AW+RT F +L+N LL + + D A A L ++ V+A+ Sbjct 6 DPGLQSQRTGMAWSRTLFVMLINS-LLCFRLSMADDSRAVFACAMLLLCVSALMSVLAIV 64 Query 70 RQR 72 R R Sbjct 65 RYR 67 >gi|257056607|ref|YP_003134439.1| hypothetical protein Svir_26240 [Saccharomonospora viridis DSM 43017] gi|256586479|gb|ACU97612.1| protein of unknown function DUF [Saccharomonospora viridis DSM 43017] Length=104 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 20/33 (61%), Positives = 22/33 (67%), Gaps = 0/33 (0%) Query 9 SDRGLQAERTTLAWTRTAFALLVNGVLLTLKDT 41 +D GLQ ERT LAW RTA A+ VNG LL T Sbjct 7 ADPGLQPERTFLAWQRTALAIGVNGALLCRNAT 39 >gi|302518171|ref|ZP_07270513.1| predicted protein [Streptomyces sp. SPB78] gi|318060001|ref|ZP_07978724.1| hypothetical protein SSA3_18803 [Streptomyces sp. SA3_actG] gi|302427066|gb|EFK98881.1| predicted protein [Streptomyces sp. SPB78] Length=110 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 33/81 (41%), Positives = 42/81 (52%), Gaps = 13/81 (16%) Query 10 DRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGP----AGLIPAGLAGAAASCCYV 65 D GLQ ERT LAW RT + V GV L LK P AG++P L + Sbjct 18 DPGLQPERTRLAWRRTVLSATVAGV-LALKAALAHGVPLVWVAGVVPVLL-------FFA 69 Query 66 IALQRQRALSHRPLPARITPR 86 +A +R RAL+ P PA ++PR Sbjct 70 LATRRARALAV-PRPAALSPR 89 >gi|318081921|ref|ZP_07989230.1| hypothetical protein SSA3_35662 [Streptomyces sp. SA3_actF] Length=109 Score = 39.3 bits (90), Expect = 0.22, Method: Compositional matrix adjust. Identities = 33/81 (41%), Positives = 42/81 (52%), Gaps = 13/81 (16%) Query 10 DRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGP----AGLIPAGLAGAAASCCYV 65 D GLQ ERT LAW RT + V GV L LK P AG++P L + Sbjct 17 DPGLQPERTRLAWRRTVLSATVAGV-LALKAALAHGVPLVWVAGVVPVLL-------FFA 68 Query 66 IALQRQRALSHRPLPARITPR 86 +A +R RAL+ P PA ++PR Sbjct 69 LATRRARALAV-PRPAALSPR 88 >gi|161505787|ref|YP_001572899.1| hypothetical protein SARI_03963 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867134|gb|ABX23757.1| hypothetical protein SARI_03963 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length=97 Score = 39.3 bits (90), Expect = 0.22, Method: Compositional matrix adjust. Identities = 25/63 (40%), Positives = 33/63 (53%), Gaps = 5/63 (7%) Query 10 DRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAASCCYVIALQ 69 D GLQ ERT L+W RTAF++L+ LTL+ G P +AG C ++ L Sbjct 10 DAGLQPERTELSWRRTAFSMLIPA-FLTLRSW----FHYGEWPYAVAGLLLISCALLVLL 64 Query 70 RQR 72 QR Sbjct 65 DQR 67 >gi|312195521|ref|YP_004015582.1| hypothetical protein FraEuI1c_1655 [Frankia sp. EuI1c] gi|311226857|gb|ADP79712.1| protein of unknown function DUF202 [Frankia sp. EuI1c] Length=112 Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 19/34 (56%), Gaps = 0/34 (0%) Query 3 RHSTAASDRGLQAERTTLAWTRTAFALLVNGVLL 36 H T D G+Q+ERT LAW RT NG LL Sbjct 6 EHPTEVLDSGMQSERTYLAWQRTGLGFAANGALL 39 >gi|284028921|ref|YP_003378852.1| hypothetical protein Kfla_0948 [Kribbella flavida DSM 17836] gi|283808214|gb|ADB30053.1| protein of unknown function DUF202 [Kribbella flavida DSM 17836] Length=101 Score = 38.5 bits (88), Expect = 0.36, Method: Compositional matrix adjust. Identities = 18/27 (67%), Positives = 20/27 (75%), Gaps = 0/27 (0%) Query 10 DRGLQAERTTLAWTRTAFALLVNGVLL 36 D GLQ ERT LAW RT+ L+ NGVLL Sbjct 4 DPGLQPERTLLAWRRTSLGLVANGVLL 30 >gi|255325742|ref|ZP_05366836.1| putative inner membrane protein [Corynebacterium tuberculostearicum SK141] gi|311741116|ref|ZP_07714941.1| membrane protein [Corynebacterium pseudogenitalium ATCC 33035] gi|255297153|gb|EET76476.1| putative inner membrane protein [Corynebacterium tuberculostearicum SK141] gi|311303918|gb|EFQ79996.1| membrane protein [Corynebacterium pseudogenitalium ATCC 33035] Length=145 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 29/80 (37%), Positives = 37/80 (47%), Gaps = 20/80 (25%) Query 13 LQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAASCCYVIAL---- 68 L ERT LAW RT+ AL+ GV L D +PAGL A + V+A+ Sbjct 48 LANERTFLAWIRTSLALIAGGVALEAFDVP--------LPAGLRSAVSVFMLVVAIILPL 99 Query 69 -------QRQRAL-SHRPLP 80 Q +RA+ RPLP Sbjct 100 VAWVHWKQSERAMREERPLP 119 >gi|300783765|ref|YP_003764056.1| hypothetical protein AMED_1844 [Amycolatopsis mediterranei U32] gi|299793279|gb|ADJ43654.1| hypothetical protein AMED_1844 [Amycolatopsis mediterranei U32] gi|340525157|gb|AEK40362.1| hypothetical protein RAM_09360 [Amycolatopsis mediterranei S699] Length=98 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 30/76 (40%), Positives = 39/76 (52%), Gaps = 3/76 (3%) Query 12 GLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAASCCYVIALQRQ 71 G QAERT LAW RTA + VLL Q G L+PA LA ++ I + R+ Sbjct 6 GAQAERTGLAWRRTALSSAACTVLLLHAAAQRHWG-GSLVPALLAAGTSALLAAIGMHRE 64 Query 72 RAL--SHRPLPARITP 85 RAL + P+R+ P Sbjct 65 RALRAAEPGPPSRVLP 80 >gi|294811750|ref|ZP_06770393.1| Hypothetical protein SCLAV_0915 [Streptomyces clavuligerus ATCC 27064] gi|326440504|ref|ZP_08215238.1| hypothetical protein SclaA2_05528 [Streptomyces clavuligerus ATCC 27064] gi|294324349|gb|EFG05992.1| Hypothetical protein SCLAV_0915 [Streptomyces clavuligerus ATCC 27064] Length=110 Score = 38.1 bits (87), Expect = 0.49, Method: Compositional matrix adjust. Identities = 27/79 (35%), Positives = 33/79 (42%), Gaps = 0/79 (0%) Query 2 NRHSTAASDRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAAS 61 R D GLQ ERT LAW RT A V GVL + G G + + Sbjct 5 GRAGPGVRDPGLQPERTRLAWRRTTLAFTVAGVLAVRQVLTGDRGGRAALALAAVVLVWA 64 Query 62 CCYVIALQRQRALSHRPLP 80 V+A +R R L P+P Sbjct 65 AFLVLAQRRLRLLGGGPVP 83 >gi|259508202|ref|ZP_05751102.1| integral membrane protein [Corynebacterium efficiens YS-314] gi|259164207|gb|EEW48761.1| integral membrane protein [Corynebacterium efficiens YS-314] Length=108 Score = 37.7 bits (86), Expect = 0.52, Method: Compositional matrix adjust. Identities = 27/65 (42%), Positives = 35/65 (54%), Gaps = 6/65 (9%) Query 9 SDRGLQAERTTLAWTRTAFALLV-NGVLLTLKDTQGADGPAGLIPAGLAGAAASCCYVIA 67 +D GLQ ERTTL+WTRT +L V VLL + G A LIP + A +++ Sbjct 8 NDPGLQPERTTLSWTRTTISLAVCTAVLLRWTNFYGV---AILIPVVI--LVALSMFILV 62 Query 68 LQRQR 72 QR R Sbjct 63 TQRIR 67 >gi|148274022|ref|YP_001223583.1| hypothetical protein CMM_2838 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831952|emb|CAN02923.1| unnamed protein product [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length=118 Score = 37.7 bits (86), Expect = 0.52, Method: Compositional matrix adjust. Identities = 25/42 (60%), Positives = 26/42 (62%), Gaps = 1/42 (2%) Query 9 SDRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGL 50 SD GLQ ERT LAW RTA A LV G LL L+ G AGL Sbjct 11 SDPGLQPERTALAWRRTALA-LVAGSLLGLRVLPTLLGTAGL 51 >gi|325964712|ref|YP_004242618.1| hypothetical protein Asphe3_33790 [Arthrobacter phenanthrenivorans Sphe3] gi|323470799|gb|ADX74484.1| hypothetical protein Asphe3_33790 [Arthrobacter phenanthrenivorans Sphe3] Length=103 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 29/64 (46%), Positives = 36/64 (57%), Gaps = 6/64 (9%) Query 10 DRGLQAERTTLAWTRTAFALL-VNGVLLTLKDTQGADGPAGLIPAGLAGAAASCCYVIAL 68 D GLQ ERTTLAW RT AL+ V+ + L G P L+ A AGAAA+ + Sbjct 4 DPGLQPERTTLAWGRTMMALVTVSAIFLRWLPQHGF--PILLLFAVSAGAAATIYFT--- 58 Query 69 QRQR 72 QR+R Sbjct 59 QRRR 62 >gi|145221572|ref|YP_001132250.1| hypothetical protein Mflv_0979 [Mycobacterium gilvum PYR-GCK] gi|145214058|gb|ABP43462.1| protein of unknown function DUF202 [Mycobacterium gilvum PYR-GCK] Length=108 Score = 37.4 bits (85), Expect = 0.73, Method: Compositional matrix adjust. Identities = 18/37 (49%), Positives = 23/37 (63%), Gaps = 1/37 (2%) Query 12 GLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPA 48 GL AERT L+W R++F LV G L+ L+ G GP Sbjct 10 GLPAERTLLSWERSSFGFLVGGALVLLRQ-HGPLGPG 45 >gi|315446693|ref|YP_004079572.1| hypothetical protein Mspyr1_52110 [Mycobacterium sp. Spyr1] gi|315264996|gb|ADU01738.1| predicted membrane protein [Mycobacterium sp. Spyr1] Length=106 Score = 37.4 bits (85), Expect = 0.77, Method: Compositional matrix adjust. Identities = 18/37 (49%), Positives = 23/37 (63%), Gaps = 1/37 (2%) Query 12 GLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPA 48 GL AERT L+W R++F LV G L+ L+ G GP Sbjct 10 GLPAERTLLSWERSSFGFLVGGALVLLR-PHGPLGPG 45 >gi|254392404|ref|ZP_05007586.1| hypothetical protein SSCG_04781 [Streptomyces clavuligerus ATCC 27064] gi|197706073|gb|EDY51885.1| hypothetical protein SSCG_04781 [Streptomyces clavuligerus ATCC 27064] Length=164 Score = 37.4 bits (85), Expect = 0.84, Method: Compositional matrix adjust. Identities = 18/34 (53%), Positives = 18/34 (53%), Gaps = 0/34 (0%) Query 2 NRHSTAASDRGLQAERTTLAWTRTAFALLVNGVL 35 R D GLQ ERT LAW RT A V GVL Sbjct 59 GRAGPGVRDPGLQPERTRLAWRRTTLAFTVAGVL 92 >gi|302533561|ref|ZP_07285903.1| predicted protein [Streptomyces sp. C] gi|302442456|gb|EFL14272.1| predicted protein [Streptomyces sp. C] Length=106 Score = 37.4 bits (85), Expect = 0.84, Method: Compositional matrix adjust. Identities = 20/35 (58%), Positives = 21/35 (60%), Gaps = 0/35 (0%) Query 1 VNRHSTAASDRGLQAERTTLAWTRTAFALLVNGVL 35 + R TAA D GLQ ERT LAW RT A V VL Sbjct 1 MTRPGTAARDAGLQPERTRLAWRRTTLACSVTAVL 35 >gi|257055331|ref|YP_003133163.1| hypothetical protein Svir_12890 [Saccharomonospora viridis DSM 43017] gi|256585203|gb|ACU96336.1| predicted membrane protein [Saccharomonospora viridis DSM 43017] Length=117 Score = 37.4 bits (85), Expect = 0.84, Method: Compositional matrix adjust. Identities = 28/73 (39%), Positives = 36/73 (50%), Gaps = 5/73 (6%) Query 13 LQAERTTLAWTRTAFALLVNGV----LLTLKDTQGADGPAGLIPAGLAGAAASCCYVIAL 68 L ERT LAWTRT+F L+ GV LL T A + GLA A+ Y+ Sbjct 19 LANERTFLAWTRTSFGLIAGGVAVHQLLPRFATANARTTLAALCIGLAAVLAASAYIHWW 78 Query 69 QRQRALSH-RPLP 80 + Q+A+ PLP Sbjct 79 RVQKAMRRGEPLP 91 >gi|260578168|ref|ZP_05846088.1| membrane protein [Corynebacterium jeikeium ATCC 43734] gi|258603707|gb|EEW16964.1| membrane protein [Corynebacterium jeikeium ATCC 43734] Length=125 Score = 37.0 bits (84), Expect = 0.90, Method: Compositional matrix adjust. Identities = 17/28 (61%), Positives = 21/28 (75%), Gaps = 0/28 (0%) Query 9 SDRGLQAERTTLAWTRTAFALLVNGVLL 36 SD+GLQ ERT+L+W RT ALLV +L Sbjct 23 SDQGLQPERTSLSWQRTLLALLVVSAML 50 >gi|253689118|ref|YP_003018308.1| hypothetical protein PC1_2742 [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755696|gb|ACT13772.1| conserved hypothetical protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length=106 Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust. Identities = 24/63 (39%), Positives = 34/63 (54%), Gaps = 1/63 (1%) Query 10 DRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAASCCYVIALQ 69 D GLQ +RT +AW+RT F +L+N LL + + D A A L A+ V+A+ Sbjct 6 DPGLQPQRTGMAWSRTLFVMLINS-LLCFRLSIVDDSRAVFACAILLLFVAALMSVLAIL 64 Query 70 RQR 72 R R Sbjct 65 RYR 67 >gi|290961629|ref|YP_003492811.1| hypothetical protein SCAB_72871 [Streptomyces scabiei 87.22] gi|260651155|emb|CBG74276.1| putative membrane protein [Streptomyces scabiei 87.22] Length=110 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 28/73 (39%), Positives = 34/73 (47%), Gaps = 8/73 (10%) Query 5 STAASDRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGLIPAGLAGAAASCCY 64 +A D GLQ ERT LAW RT V VL G AG++ AA+ C Sbjct 9 ESADRDPGLQPERTRLAWRRTTLTGAVVAVLAVKSALHGGPSAAGMV-------AAALCV 61 Query 65 VIALQRQRALSHR 77 V+ L AL+HR Sbjct 62 VVWLG-SLALAHR 73 >gi|227548565|ref|ZP_03978614.1| conserved hypothetical protein [Corynebacterium lipophiloflavum DSM 44291] gi|227079394|gb|EEI17357.1| conserved hypothetical protein [Corynebacterium lipophiloflavum DSM 44291] Length=107 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 15/27 (56%), Positives = 20/27 (75%), Gaps = 0/27 (0%) Query 5 STAASDRGLQAERTTLAWTRTAFALLV 31 S +D GLQ ERT ++WTRTA A++V Sbjct 2 SIPVADAGLQPERTAMSWTRTALAMMV 28 >gi|195940892|ref|ZP_03086274.1| hypothetical protein EscherichcoliO157_31629 [Escherichia coli O157:H7 str. EC4024] Length=120 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 34/106 (33%), Positives = 49/106 (47%), Gaps = 7/106 (6%) Query 2 NRHSTAASDRGLQAERTTLAWTRTAFALLVNGVLLTL--KDTQGADGPAGLIPAGLAGAA 59 +R + +D GLQ ERT+LAW RT LL G L+ L + GP G+ A Sbjct 4 SRKARREADPGLQPERTSLAWLRT---LLGYGALMVLAVRHNWQQAGPLFWTALGILAAV 60 Query 60 ASCCYVIALQRQRA-LSHRPLPARITPRGQVHILATAVLVLMVVTA 104 A + R R +SH A T R + +++ AV L ++ A Sbjct 61 ALLLWYYTRSRTRMDVSHYDFSASRTLRSKF-LISLAVFSLALLFA 105 >gi|170783254|ref|YP_001711588.1| hypothetical protein CMS_2958 [Clavibacter michiganensis subsp. sepedonicus] gi|169157824|emb|CAQ03029.1| putative membrane protein [Clavibacter michiganensis subsp. sepedonicus] Length=240 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/41 (59%), Positives = 26/41 (64%), Gaps = 1/41 (2%) Query 10 DRGLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAGL 50 D GLQ ERT LAW RTA AL+V G LL L+ G AGL Sbjct 134 DPGLQPERTALAWRRTALALVV-GSLLGLRVLPTLLGAAGL 173 >gi|261820824|ref|YP_003258930.1| hypothetical protein Pecwa_1526 [Pectobacterium wasabiae WPP163] gi|261604837|gb|ACX87323.1| conserved hypothetical protein [Pectobacterium wasabiae WPP163] Length=108 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 14/26 (54%), Positives = 20/26 (77%), Gaps = 0/26 (0%) Query 10 DRGLQAERTTLAWTRTAFALLVNGVL 35 D GLQ +RT +AW+RT F +L+N +L Sbjct 6 DPGLQPQRTGMAWSRTLFVMLINSLL 31 >gi|300780197|ref|ZP_07090053.1| conserved hypothetical protein [Corynebacterium genitalium ATCC 33030] gi|300534307|gb|EFK55366.1| conserved hypothetical protein [Corynebacterium genitalium ATCC 33030] Length=125 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 32/76 (43%), Positives = 36/76 (48%), Gaps = 9/76 (11%) Query 13 LQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAG------LIPAGLAGAAASCCYVI 66 L ERT LAWTRTA A L G+ L G D LI GL A S + Sbjct 29 LANERTFLAWTRTALAFLAGGIALEAFALPGIDEEWRQIAAIVLILVGLLIALGSAVRWV 88 Query 67 ALQRQRALSH-RPLPA 81 L +RAL H +PLPA Sbjct 89 HL--ERALRHKKPLPA 102 >gi|338778402|gb|EGP42876.1| hypothetical protein AXXA_28930 [Achromobacter xylosoxidans AXX-A] Length=109 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/27 (63%), Positives = 18/27 (67%), Gaps = 0/27 (0%) Query 10 DRGLQAERTTLAWTRTAFALLVNGVLL 36 D GLQ ERT LAW RT L+VN LL Sbjct 6 DPGLQPERTLLAWRRTCLGLVVNSFLL 32 >gi|334121974|ref|ZP_08496017.1| inner membrane protein YidG [Enterobacter hormaechei ATCC 49162] gi|333392556|gb|EGK63658.1| inner membrane protein YidG [Enterobacter hormaechei ATCC 49162] Length=120 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 34/106 (33%), Positives = 49/106 (47%), Gaps = 7/106 (6%) Query 2 NRHSTAASDRGLQAERTTLAWTRTAFALLVNGVLLTL--KDTQGADGPAGLIPAGLAGAA 59 +R + +D GLQ ERT+LAW RT LL G L+ L + GP G+ A Sbjct 4 SRKARREADPGLQPERTSLAWLRT---LLGYGALMVLAVRHNWQQAGPLFWAALGILAAV 60 Query 60 ASCCYVIALQRQRA-LSHRPLPARITPRGQVHILATAVLVLMVVTA 104 A + R R +SH A T R + +++ AV L ++ A Sbjct 61 ALLLWYYTRSRTRMDVSHYDFSASRTLRSKF-LISLAVFSLALLFA 105 >gi|120406787|ref|YP_956616.1| hypothetical protein Mvan_5845 [Mycobacterium vanbaalenii PYR-1] gi|119959605|gb|ABM16610.1| protein of unknown function DUF202 [Mycobacterium vanbaalenii PYR-1] Length=112 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/38 (48%), Positives = 23/38 (61%), Gaps = 4/38 (10%) Query 12 GLQAERTTLAWTRTAFALLVNGVLLTLKDTQGADGPAG 49 GL AERT L+W R++F LV G L+ L+ GP G Sbjct 10 GLPAERTLLSWERSSFGFLVGGALVLLRQ----HGPLG 43 Lambda K H 0.324 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 129509500864 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40