BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2274A
Length=82
Score E
Sequences producing significant alignments: (Bits) Value
gi|253798658|ref|YP_003031659.1| antitoxin [Mycobacterium tuberc... 165 2e-39
>gi|253798658|ref|YP_003031659.1| antitoxin [Mycobacterium tuberculosis KZN 1435]
gi|289443786|ref|ZP_06433530.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium
tuberculosis T46]
gi|289447907|ref|ZP_06437651.1| antitoxin [Mycobacterium tuberculosis CPHL_A]
13 more sequence titles
Length=82
Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 82/82 (100%), Positives = 82/82 (100%), Gaps = 0/82 (0%)
Query 1 MAEPETLPGRWLPECACLAETVSWEQSRLWSRLLCRPHFRHALPGLTGGSASRPSARSAR 60
MAEPETLPGRWLPECACLAETVSWEQSRLWSRLLCRPHFRHALPGLTGGSASRPSARSAR
Sbjct 1 MAEPETLPGRWLPECACLAETVSWEQSRLWSRLLCRPHFRHALPGLTGGSASRPSARSAR 60
Query 61 LVRQPRMTLFSLDHRDGVDARC 82
LVRQPRMTLFSLDHRDGVDARC
Sbjct 61 LVRQPRMTLFSLDHRDGVDARC 82
Lambda K H
0.324 0.135 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 127967590486
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40