BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2274A

Length=82
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|253798658|ref|YP_003031659.1|  antitoxin [Mycobacterium tuberc...   165    2e-39


>gi|253798658|ref|YP_003031659.1| antitoxin [Mycobacterium tuberculosis KZN 1435]
 gi|289443786|ref|ZP_06433530.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium 
tuberculosis T46]
 gi|289447907|ref|ZP_06437651.1| antitoxin [Mycobacterium tuberculosis CPHL_A]
 13 more sequence titles
 Length=82

 Score =  165 bits (417),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 82/82 (100%), Positives = 82/82 (100%), Gaps = 0/82 (0%)

Query  1   MAEPETLPGRWLPECACLAETVSWEQSRLWSRLLCRPHFRHALPGLTGGSASRPSARSAR  60
           MAEPETLPGRWLPECACLAETVSWEQSRLWSRLLCRPHFRHALPGLTGGSASRPSARSAR
Sbjct  1   MAEPETLPGRWLPECACLAETVSWEQSRLWSRLLCRPHFRHALPGLTGGSASRPSARSAR  60

Query  61  LVRQPRMTLFSLDHRDGVDARC  82
           LVRQPRMTLFSLDHRDGVDARC
Sbjct  61  LVRQPRMTLFSLDHRDGVDARC  82



Lambda     K      H
   0.324    0.135    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127967590486


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40