BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2274c Length=105 Score E Sequences producing significant alignments: (Bits) Value gi|15609411|ref|NP_216790.1| hypothetical protein Rv2274c [Mycob... 211 4e-53 gi|31793453|ref|NP_855946.1| hypothetical protein Mb2297c [Mycob... 210 7e-53 gi|289745549|ref|ZP_06504927.1| conserved hypothetical protein [... 207 3e-52 gi|333992725|ref|YP_004525339.1| hypothetical protein JDM601_408... 37.4 0.70 gi|225679206|gb|EEH17490.1| 40S ribosomal protein S15 [Paracocci... 37.4 0.85 gi|340627801|ref|YP_004746253.1| hypothetical protein MCAN_28281... 35.4 3.1 gi|336315099|ref|ZP_08570011.1| TIGR01620 family protein [Rheinh... 35.0 3.9 gi|134097003|ref|YP_001102664.1| major facilitator superfamily m... 34.3 6.9 gi|15609938|ref|NP_217317.1| hypothetical protein Rv2801c [Mycob... 34.3 7.0 gi|15842339|ref|NP_337376.1| hypothetical protein MT2869 [Mycoba... 34.3 7.0 >gi|15609411|ref|NP_216790.1| hypothetical protein Rv2274c [Mycobacterium tuberculosis H37Rv] gi|148662096|ref|YP_001283619.1| hypothetical protein MRA_2293 [Mycobacterium tuberculosis H37Ra] gi|253798659|ref|YP_003031660.1| toxin [Mycobacterium tuberculosis KZN 1435] 26 more sequence titles Length=105 Score = 211 bits (536), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 105/105 (100%), Positives = 105/105 (100%), Gaps = 0/105 (0%) Query 1 MSIARSAQPIGWISCPPKGGSSCCRCGGGYTHIFCVSAWTGLVVDLQAEQVRSVVTERLR 60 MSIARSAQPIGWISCPPKGGSSCCRCGGGYTHIFCVSAWTGLVVDLQAEQVRSVVTERLR Sbjct 1 MSIARSAQPIGWISCPPKGGSSCCRCGGGYTHIFCVSAWTGLVVDLQAEQVRSVVTERLR 60 Query 61 RRIGRGAPILAGTLAPGVGLAAQNREFRQFTGRSAPPSATIAFGE 105 RRIGRGAPILAGTLAPGVGLAAQNREFRQFTGRSAPPSATIAFGE Sbjct 61 RRIGRGAPILAGTLAPGVGLAAQNREFRQFTGRSAPPSATIAFGE 105 >gi|31793453|ref|NP_855946.1| hypothetical protein Mb2297c [Mycobacterium bovis AF2122/97] gi|121638156|ref|YP_978380.1| hypothetical protein BCG_2291c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990650|ref|YP_002645337.1| hypothetical protein JTY_2285 [Mycobacterium bovis BCG str. Tokyo 172] gi|31619046|emb|CAD97158.1| HYPOTHETICAL PROTEIN Mb2297c [Mycobacterium bovis AF2122/97] gi|121493804|emb|CAL72279.1| Hypothetical protein BCG_2291c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224773763|dbj|BAH26569.1| hypothetical protein JTY_2285 [Mycobacterium bovis BCG str. Tokyo 172] gi|341602194|emb|CCC64868.1| hypothetical protein BCGM_2275c [Mycobacterium bovis BCG str. Moreau RDJ] Length=105 Score = 210 bits (534), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 104/105 (99%), Positives = 105/105 (100%), Gaps = 0/105 (0%) Query 1 MSIARSAQPIGWISCPPKGGSSCCRCGGGYTHIFCVSAWTGLVVDLQAEQVRSVVTERLR 60 MSIARSAQPIGWISCPPKGGSSCCRCGGGYTH+FCVSAWTGLVVDLQAEQVRSVVTERLR Sbjct 1 MSIARSAQPIGWISCPPKGGSSCCRCGGGYTHMFCVSAWTGLVVDLQAEQVRSVVTERLR 60 Query 61 RRIGRGAPILAGTLAPGVGLAAQNREFRQFTGRSAPPSATIAFGE 105 RRIGRGAPILAGTLAPGVGLAAQNREFRQFTGRSAPPSATIAFGE Sbjct 61 RRIGRGAPILAGTLAPGVGLAAQNREFRQFTGRSAPPSATIAFGE 105 >gi|289745549|ref|ZP_06504927.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289758399|ref|ZP_06517777.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|289686077|gb|EFD53565.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289713963|gb|EFD77975.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|326903888|gb|EGE50821.1| toxin [Mycobacterium tuberculosis W-148] Length=105 Score = 207 bits (528), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 104/105 (99%), Positives = 104/105 (99%), Gaps = 0/105 (0%) Query 1 MSIARSAQPIGWISCPPKGGSSCCRCGGGYTHIFCVSAWTGLVVDLQAEQVRSVVTERLR 60 MSIARSAQPIGWISCPPKGGSSCCRCGGGYTHIFCVSAWT LVVDLQAEQVRSVVTERLR Sbjct 1 MSIARSAQPIGWISCPPKGGSSCCRCGGGYTHIFCVSAWTVLVVDLQAEQVRSVVTERLR 60 Query 61 RRIGRGAPILAGTLAPGVGLAAQNREFRQFTGRSAPPSATIAFGE 105 RRIGRGAPILAGTLAPGVGLAAQNREFRQFTGRSAPPSATIAFGE Sbjct 61 RRIGRGAPILAGTLAPGVGLAAQNREFRQFTGRSAPPSATIAFGE 105 >gi|333992725|ref|YP_004525339.1| hypothetical protein JDM601_4085 [Mycobacterium sp. JDM601] gi|333488693|gb|AEF38085.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=115 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 20/36 (56%), Positives = 24/36 (67%), Gaps = 2/36 (5%) Query 32 HIFCVSAWTGLVVD--LQAEQVRSVVTERLRRRIGR 65 + + TGL VD QAEQ+RSV ERL+RRIGR Sbjct 61 QVLLPATSTGLAVDSKAQAEQIRSVAVERLQRRIGR 96 >gi|225679206|gb|EEH17490.1| 40S ribosomal protein S15 [Paracoccidioides brasiliensis Pb03] Length=203 Score = 37.4 bits (85), Expect = 0.85, Method: Compositional matrix adjust. Identities = 25/65 (39%), Positives = 33/65 (51%), Gaps = 18/65 (27%) Query 20 GSSCCRCGG-GYTHI-FCVSA------------WTGL----VVDLQAEQVRSVVTERLRR 61 G S C G GYTHI FC+ + + G+ ++DL +EQ+R VV R RR Sbjct 42 GKSFCYVGQTGYTHILFCLESEIKKKRAFRKFSYRGIDLDQLLDLSSEQLRDVVHARARR 101 Query 62 RIGRG 66 R RG Sbjct 102 RFNRG 106 >gi|340627801|ref|YP_004746253.1| hypothetical protein MCAN_28281 [Mycobacterium canettii CIPT 140010059] gi|340005991|emb|CCC45159.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059] Length=118 Score = 35.4 bits (80), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/51 (42%), Positives = 28/51 (55%), Gaps = 2/51 (3%) Query 32 HIFCVSAWTGLVVD--LQAEQVRSVVTERLRRRIGRGAPILAGTLAPGVGL 80 + + TGL VD QAEQ+RS+ TERL R IGR + + L + L Sbjct 62 QVLLSATTTGLQVDCKAQAEQIRSIATERLLRPIGRVSAVELAQLDEALKL 112 >gi|336315099|ref|ZP_08570011.1| TIGR01620 family protein [Rheinheimera sp. A13L] gi|335880510|gb|EGM78397.1| TIGR01620 family protein [Rheinheimera sp. A13L] Length=337 Score = 35.0 bits (79), Expect = 3.9, Method: Composition-based stats. Identities = 20/55 (37%), Positives = 32/55 (59%), Gaps = 5/55 (9%) Query 32 HIFCVSAWTG---LVVDLQAEQVRSVVTERLRRRIGRGAPILAGTLAPGVGLAAQ 83 H+F W G L +DL ++ + + +T +L R G+G ++AG L +GLAAQ Sbjct 249 HLFAALLWAGSSELALDLGSDLIGAELTSKLSMRAGQG--LIAGMLVARLGLAAQ 301 >gi|134097003|ref|YP_001102664.1| major facilitator superfamily multidrug transporter [Saccharopolyspora erythraea NRRL 2338] gi|291006251|ref|ZP_06564224.1| major facilitator superfamily multidrug transporter [Saccharopolyspora erythraea NRRL 2338] gi|133909626|emb|CAL99738.1| multidrug transporter, MFS superfamily [Saccharopolyspora erythraea NRRL 2338] Length=538 Score = 34.3 bits (77), Expect = 6.9, Method: Compositional matrix adjust. Identities = 22/59 (38%), Positives = 32/59 (55%), Gaps = 1/59 (1%) Query 29 GYTHIFCVSAWTGLVVDLQAEQVRSVVTERLRRRIGR-GAPILAGTLAPGVGLAAQNRE 86 G+ +F V+ GL+ + +V +V TER+R RI GA L L P + +A Q RE Sbjct 181 GWRWVFLVNVPVGLIALVVVAKVLNVETERVRHRIDYWGAAALVVMLVPLLTVAEQGRE 239 >gi|15609938|ref|NP_217317.1| hypothetical protein Rv2801c [Mycobacterium tuberculosis H37Rv] gi|31793977|ref|NP_856470.1| hypothetical protein Mb2824c [Mycobacterium bovis AF2122/97] gi|121638681|ref|YP_978905.1| hypothetical protein BCG_2819c [Mycobacterium bovis BCG str. Pasteur 1173P2] 47 more sequence titles Length=118 Score = 34.3 bits (77), Expect = 7.0, Method: Compositional matrix adjust. Identities = 19/36 (53%), Positives = 23/36 (64%), Gaps = 2/36 (5%) Query 32 HIFCVSAWTGLVVD--LQAEQVRSVVTERLRRRIGR 65 + + TGL VD QAEQ+RS+ TERL R IGR Sbjct 62 QVLLSATTTGLQVDCKAQAEQIRSIATERLLRPIGR 97 >gi|15842339|ref|NP_337376.1| hypothetical protein MT2869 [Mycobacterium tuberculosis CDC1551] gi|254365452|ref|ZP_04981497.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|289553412|ref|ZP_06442622.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] 29 more sequence titles Length=117 Score = 34.3 bits (77), Expect = 7.0, Method: Compositional matrix adjust. Identities = 19/36 (53%), Positives = 23/36 (64%), Gaps = 2/36 (5%) Query 32 HIFCVSAWTGLVVD--LQAEQVRSVVTERLRRRIGR 65 + + TGL VD QAEQ+RS+ TERL R IGR Sbjct 61 QVLLSATTTGLQVDCKAQAEQIRSIATERLLRPIGR 96 Lambda K H 0.323 0.137 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 131458853568 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40