BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2282c Length=312 Score E Sequences producing significant alignments: (Bits) Value gi|15609419|ref|NP_216798.1| LysR family transcriptional regulat... 605 3e-171 gi|340627286|ref|YP_004745738.1| putative transcription regulato... 603 1e-170 gi|339295192|gb|AEJ47303.1| LysR family transcriptional regulato... 594 7e-168 gi|254232424|ref|ZP_04925751.1| hypothetical protein TBCG_02225 ... 558 4e-157 gi|289447913|ref|ZP_06437657.1| LysR family transcriptional regu... 505 4e-141 gi|254818692|ref|ZP_05223693.1| LysR-family protein transcriptio... 488 5e-136 gi|118462246|ref|YP_881361.1| LysR family transcriptional regula... 478 6e-133 gi|336461761|gb|EGO40620.1| transcriptional regulator [Mycobacte... 477 1e-132 gi|41408136|ref|NP_960972.1| hypothetical protein MAP2038c [Myco... 474 5e-132 gi|342857343|ref|ZP_08713999.1| LysR family transcriptional regu... 471 6e-131 gi|183983408|ref|YP_001851699.1| LysR family transcriptional reg... 469 2e-130 gi|240168737|ref|ZP_04747396.1| LysR family transcriptional regu... 468 4e-130 gi|118618154|ref|YP_906486.1| LysR family transcriptional regula... 468 7e-130 gi|296166242|ref|ZP_06848681.1| LysR family transcriptional regu... 463 1e-128 gi|118467384|ref|YP_887128.1| LysR family transcriptional regula... 354 1e-95 gi|118468440|ref|YP_884954.1| transcriptional regulator [Mycobac... 330 2e-88 gi|343925862|ref|ZP_08765377.1| putative LysR family transcripti... 261 8e-68 gi|152967693|ref|YP_001363477.1| LysR family transcriptional reg... 250 3e-64 gi|116662087|ref|YP_829142.1| LysR family transcriptional regula... 237 2e-60 gi|297198465|ref|ZP_06915862.1| transcriptional regulator [Strep... 236 5e-60 gi|328881260|emb|CCA54499.1| Transcriptional regulator, LysR fam... 233 4e-59 gi|294628451|ref|ZP_06707011.1| transcriptional regulator [Strep... 230 2e-58 gi|302550266|ref|ZP_07302608.1| transcriptional regulator [Strep... 230 2e-58 gi|290961718|ref|YP_003492900.1| transcriptional regulator [Stre... 227 2e-57 gi|291450438|ref|ZP_06589828.1| LysR-family transcriptional regu... 226 3e-57 gi|302533501|ref|ZP_07285843.1| LysR family transcriptional regu... 226 4e-57 gi|312140793|ref|YP_004008129.1| lysr family transcriptional reg... 221 8e-56 gi|256390541|ref|YP_003112105.1| LysR family transcriptional reg... 221 1e-55 gi|345011597|ref|YP_004813951.1| LysR family transcriptional reg... 219 4e-55 gi|84498377|ref|ZP_00997174.1| Probable transcription regulator ... 219 4e-55 gi|312140796|ref|YP_004008132.1| lysr family transcriptional reg... 218 7e-55 gi|326780352|ref|ZP_08239617.1| transcriptional regulator, LysR ... 217 2e-54 gi|182439688|ref|YP_001827407.1| LysR family transcriptional reg... 217 2e-54 gi|337762726|emb|CCB71434.1| conserved protein of unknown functi... 217 2e-54 gi|320011773|gb|ADW06623.1| transcriptional regulator, LysR fami... 216 4e-54 gi|344998649|ref|YP_004801503.1| LysR family transcriptional reg... 216 4e-54 gi|302518085|ref|ZP_07270427.1| LysR family transcriptional regu... 215 6e-54 gi|29833264|ref|NP_827898.1| LysR family transcriptional regulat... 215 6e-54 gi|226305475|ref|YP_002765435.1| LysR family transcriptional reg... 214 1e-53 gi|333028236|ref|ZP_08456300.1| putative LysR family transcripti... 214 2e-53 gi|318062290|ref|ZP_07981011.1| transcriptional regulator [Strep... 214 2e-53 gi|111023194|ref|YP_706166.1| LysR family transcriptional regula... 213 2e-53 gi|226365699|ref|YP_002783482.1| LysR family transcriptional reg... 213 2e-53 gi|254385025|ref|ZP_05000359.1| LysR-family transcriptional regu... 211 1e-52 gi|229489677|ref|ZP_04383540.1| LysR-family transcriptional regu... 211 1e-52 gi|326329024|ref|ZP_08195353.1| transcriptional regulator, LysR ... 211 1e-52 gi|134100310|ref|YP_001105971.1| LysR family transcriptional reg... 210 2e-52 gi|311897217|dbj|BAJ29625.1| putative LysR family transcriptiona... 210 3e-52 gi|154508465|ref|ZP_02044107.1| hypothetical protein ACTODO_0096... 209 6e-52 gi|184201608|ref|YP_001855815.1| LysR family transcriptional reg... 207 2e-51 >gi|15609419|ref|NP_216798.1| LysR family transcriptional regulator [Mycobacterium tuberculosis H37Rv] gi|15841773|ref|NP_336810.1| LysR family transcriptional regulator [Mycobacterium tuberculosis CDC1551] gi|31793459|ref|NP_855952.1| LysR family transcriptional regulator [Mycobacterium bovis AF2122/97] 74 more sequence titles Length=312 Score = 605 bits (1560), Expect = 3e-171, Method: Compositional matrix adjust. Identities = 312/312 (100%), Positives = 312/312 (100%), Gaps = 0/312 (0%) Query 1 MPLSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTR 60 MPLSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTR Sbjct 1 MPLSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTR 60 Query 61 GSQLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSL 120 GSQLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSL Sbjct 61 GSQLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSL 120 Query 121 RAADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVV 180 RAADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVV Sbjct 121 RAADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVV 180 Query 181 VPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSS 240 VPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSS Sbjct 181 VPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSS 240 Query 241 AAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAI 300 AAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAI Sbjct 241 AAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAI 300 Query 301 RDLLSHITSRST 312 RDLLSHITSRST Sbjct 301 RDLLSHITSRST 312 >gi|340627286|ref|YP_004745738.1| putative transcription regulator (lysR family) [Mycobacterium canettii CIPT 140010059] gi|340005476|emb|CCC44636.1| putative transcription regulator (lysR family) [Mycobacterium canettii CIPT 140010059] Length=312 Score = 603 bits (1555), Expect = 1e-170, Method: Compositional matrix adjust. Identities = 310/312 (99%), Positives = 312/312 (100%), Gaps = 0/312 (0%) Query 1 MPLSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTR 60 MPLSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIG+RLAIRTTR Sbjct 1 MPLSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGLRLAIRTTR 60 Query 61 GSQLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSL 120 GSQLTPAGIVVAEWAARLLEVA+EIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSL Sbjct 61 GSQLTPAGIVVAEWAARLLEVAEEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSL 120 Query 121 RAADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVV 180 RAADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVV Sbjct 121 RAADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVV 180 Query 181 VPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSS 240 VPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSS Sbjct 181 VPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSS 240 Query 241 AAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAI 300 AAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAI Sbjct 241 AAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAI 300 Query 301 RDLLSHITSRST 312 RDLLSHITSRST Sbjct 301 RDLLSHITSRST 312 >gi|339295192|gb|AEJ47303.1| LysR family transcriptional regulator [Mycobacterium tuberculosis CCDC5079] gi|339298812|gb|AEJ50922.1| LysR family transcriptional regulator [Mycobacterium tuberculosis CCDC5180] Length=306 Score = 594 bits (1531), Expect = 7e-168, Method: Compositional matrix adjust. Identities = 306/306 (100%), Positives = 306/306 (100%), Gaps = 0/306 (0%) Query 7 MPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTRGSQLTP 66 MPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTRGSQLTP Sbjct 1 MPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTRGSQLTP 60 Query 67 AGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSLRAADMR 126 AGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSLRAADMR Sbjct 61 AGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSLRAADMR 120 Query 127 RGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVVVPPGHK 186 RGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVVVPPGHK Sbjct 121 RGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVVVPPGHK 180 Query 187 WARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSSAAAVRA 246 WARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSSAAAVRA Sbjct 181 WARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSSAAAVRA 240 Query 247 AVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAIRDLLSH 306 AVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAIRDLLSH Sbjct 241 AVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAIRDLLSH 300 Query 307 ITSRST 312 ITSRST Sbjct 301 ITSRST 306 >gi|254232424|ref|ZP_04925751.1| hypothetical protein TBCG_02225 [Mycobacterium tuberculosis C] gi|124601483|gb|EAY60493.1| hypothetical protein TBCG_02225 [Mycobacterium tuberculosis C] Length=312 Score = 558 bits (1438), Expect = 4e-157, Method: Compositional matrix adjust. Identities = 304/312 (98%), Positives = 305/312 (98%), Gaps = 0/312 (0%) Query 1 MPLSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTR 60 MPLSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTR Sbjct 1 MPLSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTR 60 Query 61 GSQLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSL 120 GSQLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLS Sbjct 61 GSQLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSC 120 Query 121 RAADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVV 180 + RGGTV EVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVV Sbjct 121 GPSTCARGGTVSEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVV 180 Query 181 VPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSS 240 VPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSS Sbjct 181 VPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSS 240 Query 241 AAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAI 300 AAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAI Sbjct 241 AAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAI 300 Query 301 RDLLSHITSRST 312 RDLLSHITSRST Sbjct 301 RDLLSHITSRST 312 >gi|289447913|ref|ZP_06437657.1| LysR family transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289420871|gb|EFD18072.1| LysR family transcriptional regulator [Mycobacterium tuberculosis CPHL_A] Length=261 Score = 505 bits (1300), Expect = 4e-141, Method: Compositional matrix adjust. Identities = 260/261 (99%), Positives = 261/261 (100%), Gaps = 0/261 (0%) Query 52 VRLAIRTTRGSQLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQ 111 +RLAIRTTRGSQLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQ Sbjct 1 MRLAIRTTRGSQLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQ 60 Query 112 LMPHWMLSLRAADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVV 171 LMPHWMLSLRAADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVV Sbjct 61 LMPHWMLSLRAADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVV 120 Query 172 VARDELVVVVPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQ 231 VARDELVVVVPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQ Sbjct 121 VARDELVVVVPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQ 180 Query 232 APPVLELSSAAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVG 291 APPVLELSSAAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVG Sbjct 181 APPVLELSSAAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVG 240 Query 292 GRTPPAGAIRDLLSHITSRST 312 GRTPPAGAIRDLLSHITSRST Sbjct 241 GRTPPAGAIRDLLSHITSRST 261 >gi|254818692|ref|ZP_05223693.1| LysR-family protein transcriptional regulator [Mycobacterium intracellulare ATCC 13950] Length=313 Score = 488 bits (1256), Expect = 5e-136, Method: Compositional matrix adjust. Identities = 247/312 (80%), Positives = 277/312 (89%), Gaps = 0/312 (0%) Query 1 MPLSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTR 60 MPLS R+P L FE FLAIAE GSLG AARELGLTQQA+SRRLA+MEAQIGV LA+RTTR Sbjct 1 MPLSPRLPELASFEAFLAIAETGSLGRAARELGLTQQAISRRLATMEAQIGVTLAVRTTR 60 Query 61 GSQLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSL 120 GSQLTPAG++VA+WA RLL+VA E+DAGLGSLR EGR+RIRV ASQTI+EQLMPHW+LSL Sbjct 61 GSQLTPAGLIVADWATRLLDVAHEVDAGLGSLRKEGRERIRVSASQTISEQLMPHWLLSL 120 Query 121 RAADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVV 180 +A RRG T P+VILTATNS+HAIA+VRDG ADLGF+ENP P GLGS VV DELV+V Sbjct 121 QADAARRGDTAPQVILTATNSDHAIASVRDGTADLGFVENPGTPKGLGSCVVGEDELVIV 180 Query 181 VPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSS 240 VPP HKWARRSR+V+ARELAQTPLV+RE +SGIRDSLTAALR LGEDMQQA PVLEL+S Sbjct 181 VPPDHKWARRSRIVTARELAQTPLVSRELHSGIRDSLTAALRQVLGEDMQQAAPVLELTS 240 Query 241 AAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAI 300 +AA+RAAVLAGAGPAAMSRLA+ADDLA GRL AV IP L+LRR+ RAIWVGGRTPPAGAI Sbjct 241 SAAMRAAVLAGAGPAAMSRLAVADDLAVGRLHAVHIPKLDLRRKFRAIWVGGRTPPAGAI 300 Query 301 RDLLSHITSRST 312 RDLLSHI +R+T Sbjct 301 RDLLSHIINRTT 312 >gi|118462246|ref|YP_881361.1| LysR family transcriptional regulator [Mycobacterium avium 104] gi|254774862|ref|ZP_05216378.1| LysR-family protein transcriptional regulator [Mycobacterium avium subsp. avium ATCC 25291] gi|118163533|gb|ABK64430.1| LysR-family protein transcriptional regulator [Mycobacterium avium 104] Length=315 Score = 478 bits (1229), Expect = 6e-133, Method: Compositional matrix adjust. Identities = 251/311 (81%), Positives = 276/311 (89%), Gaps = 0/311 (0%) Query 1 MPLSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTR 60 MPLS RMP L FE FLAIAE GSLG AARELGLTQQA+SRRLA+MEAQIGV LA+RTTR Sbjct 1 MPLSPRMPELASFEAFLAIAETGSLGRAARELGLTQQAISRRLATMEAQIGVTLAVRTTR 60 Query 61 GSQLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSL 120 GSQLTPAG++VA+WAARLLEVA EIDAGLGSLR EGR+RIRV ASQTI+EQLMPHW+LSL Sbjct 61 GSQLTPAGLIVADWAARLLEVAHEIDAGLGSLRKEGRERIRVAASQTISEQLMPHWLLSL 120 Query 121 RAADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVV 180 +A RRG P+VILTATNSEHAIA+VRDG ADLGF+ENP P GLGS VV DELV+V Sbjct 121 QAEATRRGEAAPQVILTATNSEHAIASVRDGSADLGFVENPGTPKGLGSCVVGEDELVIV 180 Query 181 VPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSS 240 VPP HKWARRSRVV+ARELAQTPLV REP+SGIRDSLT ALR LGEDMQQA PVLEL+S Sbjct 181 VPPTHKWARRSRVVTARELAQTPLVAREPHSGIRDSLTVALRKVLGEDMQQAAPVLELTS 240 Query 241 AAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAI 300 AAA+RAAVLAGAGPAAMSRLA+ADDLA GRL AV+IP L+LRR+ RAIW+GGRTPPAGAI Sbjct 241 AAAMRAAVLAGAGPAAMSRLAVADDLAVGRLHAVEIPKLDLRRKFRAIWIGGRTPPAGAI 300 Query 301 RDLLSHITSRS 311 RDLLSHI +R+ Sbjct 301 RDLLSHIIART 311 >gi|336461761|gb|EGO40620.1| transcriptional regulator [Mycobacterium avium subsp. paratuberculosis S397] Length=315 Score = 477 bits (1228), Expect = 1e-132, Method: Compositional matrix adjust. Identities = 251/311 (81%), Positives = 276/311 (89%), Gaps = 0/311 (0%) Query 1 MPLSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTR 60 MPLS RMP L FE FLAIAE GSLG AARELGLTQQA+SRRLA+MEAQIGV LA+RTTR Sbjct 1 MPLSPRMPELASFEAFLAIAETGSLGRAARELGLTQQAISRRLATMEAQIGVTLAVRTTR 60 Query 61 GSQLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSL 120 GSQLTPAG++VA+WAARLLEVA EIDAGLGSLR EGR+RIRV ASQTI+EQLMPHW+LSL Sbjct 61 GSQLTPAGLIVADWAARLLEVAHEIDAGLGSLRKEGRERIRVAASQTISEQLMPHWLLSL 120 Query 121 RAADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVV 180 +A RRG P+VILTATNSEHAIA+VRDG ADLGF+ENP P GLGS VV DELV+V Sbjct 121 QAEATRRGEAAPQVILTATNSEHAIASVRDGSADLGFVENPGTPKGLGSCVVGEDELVIV 180 Query 181 VPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSS 240 VPP HKWARRSRVV+ARELAQTPLV REP+SGIRDSLT ALR LGEDMQQA PVLEL+S Sbjct 181 VPPTHKWARRSRVVTARELAQTPLVAREPHSGIRDSLTVALRKVLGEDMQQAAPVLELTS 240 Query 241 AAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAI 300 AAA+RAAVLAGAGPAAMSRLA+ADDLA GRL AV+IP L+LRR+ RAIW+GGRTPPAGAI Sbjct 241 AAAMRAAVLAGAGPAAMSRLAVADDLAVGRLHAVEIPKLDLRRKFRAIWIGGRTPPAGAI 300 Query 301 RDLLSHITSRS 311 RDLLSHI +R+ Sbjct 301 RDLLSHIIART 311 >gi|41408136|ref|NP_960972.1| hypothetical protein MAP2038c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396491|gb|AAS04355.1| hypothetical protein MAP_2038c [Mycobacterium avium subsp. paratuberculosis K-10] Length=315 Score = 474 bits (1221), Expect = 5e-132, Method: Compositional matrix adjust. Identities = 250/311 (81%), Positives = 275/311 (89%), Gaps = 0/311 (0%) Query 1 MPLSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTR 60 MPLS RMP L FE FLAIAE GSLG AAREL LTQQA+SRRLA+MEAQIGV LA+RTTR Sbjct 1 MPLSPRMPELASFEAFLAIAETGSLGRAARELELTQQAISRRLATMEAQIGVTLAVRTTR 60 Query 61 GSQLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSL 120 GSQLTPAG++VA+WAARLLEVA EIDAGLGSLR EGR+RIRV ASQTI+EQLMPHW+LSL Sbjct 61 GSQLTPAGLIVADWAARLLEVAHEIDAGLGSLRKEGRERIRVAASQTISEQLMPHWLLSL 120 Query 121 RAADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVV 180 +A RRG P+VILTATNSEHAIA+VRDG ADLGF+ENP P GLGS VV DELV+V Sbjct 121 QAEATRRGEAAPQVILTATNSEHAIASVRDGSADLGFVENPGTPKGLGSCVVGEDELVIV 180 Query 181 VPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSS 240 VPP HKWARRSRVV+ARELAQTPLV REP+SGIRDSLT ALR LGEDMQQA PVLEL+S Sbjct 181 VPPTHKWARRSRVVTARELAQTPLVAREPHSGIRDSLTVALRKVLGEDMQQAAPVLELTS 240 Query 241 AAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAI 300 AAA+RAAVLAGAGPAAMSRLA+ADDLA GRL AV+IP L+LRR+ RAIW+GGRTPPAGAI Sbjct 241 AAAMRAAVLAGAGPAAMSRLAVADDLAVGRLHAVEIPKLDLRRKFRAIWIGGRTPPAGAI 300 Query 301 RDLLSHITSRS 311 RDLLSHI +R+ Sbjct 301 RDLLSHIIART 311 >gi|342857343|ref|ZP_08713999.1| LysR family transcriptional regulator [Mycobacterium colombiense CECT 3035] gi|342134676|gb|EGT87842.1| LysR family transcriptional regulator [Mycobacterium colombiense CECT 3035] Length=314 Score = 471 bits (1212), Expect = 6e-131, Method: Compositional matrix adjust. Identities = 246/309 (80%), Positives = 274/309 (89%), Gaps = 0/309 (0%) Query 1 MPLSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTR 60 MPLS R+P L+ FE FLAIAE GSLG AARELGLTQQA+SRRLA+MEAQIGV LA+RTTR Sbjct 1 MPLSPRLPELSSFEAFLAIAETGSLGRAARELGLTQQAISRRLATMEAQIGVTLAVRTTR 60 Query 61 GSQLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSL 120 GSQLTPAG++VA+WA RLLEVA EIDAGLGSLR EGR+R+RV ASQTI+EQLMPHW+LSL Sbjct 61 GSQLTPAGLIVADWATRLLEVAGEIDAGLGSLRKEGRERVRVAASQTISEQLMPHWLLSL 120 Query 121 RAADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVV 180 +A RRG T P+VILTATNS+HAIA+VRDG ADLGF+ENP P GLGS VV DELV+V Sbjct 121 QAEATRRGDTAPQVILTATNSDHAIASVRDGSADLGFVENPGTPKGLGSCVVGEDELVIV 180 Query 181 VPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSS 240 VPP HKWARR RVV+ARELAQTPLV RE +SGIRDSLT ALR LGEDMQQAPPVLEL+S Sbjct 181 VPPNHKWARRGRVVTARELAQTPLVARELHSGIRDSLTVALRKVLGEDMQQAPPVLELTS 240 Query 241 AAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAI 300 AAA+RAAVLAGAGPA MSRLA+ADDLAFGRL AV+IP L+LRR+ RAIW+GGRTPPAGAI Sbjct 241 AAAMRAAVLAGAGPATMSRLAVADDLAFGRLHAVEIPKLDLRRKFRAIWIGGRTPPAGAI 300 Query 301 RDLLSHITS 309 RDL+SHI S Sbjct 301 RDLVSHILS 309 >gi|183983408|ref|YP_001851699.1| LysR family transcriptional regulator [Mycobacterium marinum M] gi|183176734|gb|ACC41844.1| transcription regulator (LysR family) [Mycobacterium marinum M] Length=312 Score = 469 bits (1208), Expect = 2e-130, Method: Compositional matrix adjust. Identities = 251/309 (82%), Positives = 272/309 (89%), Gaps = 0/309 (0%) Query 1 MPLSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTR 60 MPLS RMP L FEIFLAIA+ GSLG AARELGLTQQAVS+RLA+MEA GV LA+RTTR Sbjct 1 MPLSPRMPELGSFEIFLAIAQTGSLGAAARELGLTQQAVSKRLAAMEAHTGVTLAVRTTR 60 Query 61 GSQLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSL 120 GSQLTPAG++V+EWAARLLEVA EIDAGLGSLR EGR+RIRV ASQTIAEQLMPHW+L+L Sbjct 61 GSQLTPAGLIVSEWAARLLEVAQEIDAGLGSLRKEGRERIRVAASQTIAEQLMPHWLLAL 120 Query 121 RAADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVV 180 + A RRG T P+VILTATNS+HAIAAVRDG ADLGF+ENP PPTGLGS VV D+LVVV Sbjct 121 QDAAKRRGTTAPQVILTATNSDHAIAAVRDGTADLGFVENPGPPTGLGSRVVGHDDLVVV 180 Query 181 VPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSS 240 VPPGHKW RR V+ARELA+TPLVTREP SGIRDSLT ALR LGEDM QA PVLELSS Sbjct 181 VPPGHKWTRRPSPVTARELAETPLVTREPRSGIRDSLTVALRQVLGEDMVQASPVLELSS 240 Query 241 AAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAI 300 AAA+RAAVLAGAGPAAMSRLAIADDLA GRL A+ IP L+LRRQLRAIWVGGR PPAGAI Sbjct 241 AAAMRAAVLAGAGPAAMSRLAIADDLAVGRLRAISIPGLDLRRQLRAIWVGGRVPPAGAI 300 Query 301 RDLLSHITS 309 R+LLSHITS Sbjct 301 RELLSHITS 309 >gi|240168737|ref|ZP_04747396.1| LysR family transcriptional regulator [Mycobacterium kansasii ATCC 12478] Length=310 Score = 468 bits (1205), Expect = 4e-130, Method: Compositional matrix adjust. Identities = 249/309 (81%), Positives = 274/309 (89%), Gaps = 0/309 (0%) Query 1 MPLSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTR 60 MPLSSRMP L FEIFLAIA+ GSLGGAARELGLTQQAVS+RLA+MEAQ+GV LA RTTR Sbjct 1 MPLSSRMPELASFEIFLAIAQTGSLGGAARELGLTQQAVSKRLAAMEAQVGVTLAARTTR 60 Query 61 GSQLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSL 120 GSQLTPAG+VVAEWAARLL+VA E+DAGLG+LR EGR+RI+VVASQTIAEQLMPHW+LSL Sbjct 61 GSQLTPAGVVVAEWAARLLDVASEVDAGLGALRKEGRERIKVVASQTIAEQLMPHWLLSL 120 Query 121 RAADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVV 180 + A RRG + P+VILTATNSEHAIAAVR G ADLGF+ENP PP GLGS VV DELV+V Sbjct 121 QDAARRRGDSAPQVILTATNSEHAIAAVRGGAADLGFVENPGPPKGLGSCVVGHDELVIV 180 Query 181 VPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSS 240 VPPGHKW RR+ VSA ELAQTPLVTREP SGIRDSLT ALR LG+D++QA PVLELSS Sbjct 181 VPPGHKWTRRAHPVSAGELAQTPLVTREPRSGIRDSLTVALRQVLGDDVRQASPVLELSS 240 Query 241 AAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAI 300 AAA+RAAVLAGAGPAAMSRLA+ADDLA GRL AV +P L+LRRQ RAIWVGGRTPPAGAI Sbjct 241 AAAMRAAVLAGAGPAAMSRLAVADDLAVGRLSAVPVPELDLRRQFRAIWVGGRTPPAGAI 300 Query 301 RDLLSHITS 309 R+LLSHI S Sbjct 301 RELLSHIRS 309 >gi|118618154|ref|YP_906486.1| LysR family transcriptional regulator [Mycobacterium ulcerans Agy99] gi|118570264|gb|ABL05015.1| transcription regulator (LysR family) [Mycobacterium ulcerans Agy99] Length=312 Score = 468 bits (1203), Expect = 7e-130, Method: Compositional matrix adjust. Identities = 250/309 (81%), Positives = 271/309 (88%), Gaps = 0/309 (0%) Query 1 MPLSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTR 60 MPLS RMP L FEIFLAIA+ GSLG AARELGLTQQAVS+RLA+MEA GV LA+RTTR Sbjct 1 MPLSPRMPELASFEIFLAIAQTGSLGAAARELGLTQQAVSKRLAAMEAHTGVTLAVRTTR 60 Query 61 GSQLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSL 120 GSQLTPAG++V+EWAARLLEVA EIDAGLGSLR EGR+RIRV ASQTIAEQLMPHW+L+L Sbjct 61 GSQLTPAGLIVSEWAARLLEVAQEIDAGLGSLRKEGRERIRVAASQTIAEQLMPHWLLAL 120 Query 121 RAADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVV 180 + A RRG T P+VILTATNS+HAIAAVRDG ADLGF+ENP PPTGLGS VV D+LVVV Sbjct 121 QDAAKRRGTTAPQVILTATNSDHAIAAVRDGTADLGFVENPGPPTGLGSRVVGHDDLVVV 180 Query 181 VPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSS 240 VPPGHKW RR V+ARELA+ PLVTREP SGIRDSLT ALR LGEDM QA PVLELSS Sbjct 181 VPPGHKWTRRPSPVTARELAEMPLVTREPRSGIRDSLTVALRQVLGEDMVQASPVLELSS 240 Query 241 AAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAI 300 AAA+RAAVLAGAGPAAMSRLAIADDLA GRL A+ IP L+LRRQLRAIWVGGR PPAGAI Sbjct 241 AAAMRAAVLAGAGPAAMSRLAIADDLAVGRLRAISIPGLDLRRQLRAIWVGGRVPPAGAI 300 Query 301 RDLLSHITS 309 R+LLSHITS Sbjct 301 RELLSHITS 309 >gi|296166242|ref|ZP_06848681.1| LysR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898426|gb|EFG77993.1| LysR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length=314 Score = 463 bits (1192), Expect = 1e-128, Method: Compositional matrix adjust. Identities = 243/312 (78%), Positives = 271/312 (87%), Gaps = 0/312 (0%) Query 1 MPLSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTR 60 MPLS RMP L FE FLAIAE GSLG AARELG+TQQAVSRRLA+MEAQ+GV LA+RTTR Sbjct 1 MPLSPRMPELASFEAFLAIAETGSLGRAARELGITQQAVSRRLAAMEAQVGVTLAVRTTR 60 Query 61 GSQLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSL 120 GS+LTPAG++VAEWA RLLEVA EIDAGLG LR EGR+RIRV ASQTI+EQLMPHW+LSL Sbjct 61 GSELTPAGLIVAEWAGRLLEVATEIDAGLGGLRKEGRERIRVAASQTISEQLMPHWLLSL 120 Query 121 RAADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVV 180 + RRGG P V LTATNSE AIAAVR+G DLGF+ENP P GLGS VV DELV+V Sbjct 121 QTEAARRGGAAPHVTLTATNSEQAIAAVREGAVDLGFVENPGQPKGLGSCVVGHDELVIV 180 Query 181 VPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSS 240 VPPGHKWARR RVV+ARELA+TPLV REP+SGIRDSLT ALR LGEDMQQAPPVLEL+S Sbjct 181 VPPGHKWARRGRVVTARELAETPLVAREPHSGIRDSLTVALRRVLGEDMQQAPPVLELTS 240 Query 241 AAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAI 300 AAA+RAAVLAGAGPAAMSRLA+ADDLA GRL AV + ++LRR+ RAIWVGGRTPPAGAI Sbjct 241 AAAMRAAVLAGAGPAAMSRLAVADDLAVGRLQAVSVREVDLRRKFRAIWVGGRTPPAGAI 300 Query 301 RDLLSHITSRST 312 RD+LSHI+SR++ Sbjct 301 RDMLSHISSRTS 312 >gi|118467384|ref|YP_887128.1| LysR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118168671|gb|ABK69567.1| LysR-family protein transcriptional regulator [Mycobacterium smegmatis str. MC2 155] Length=310 Score = 354 bits (908), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 205/307 (67%), Positives = 234/307 (77%), Gaps = 1/307 (0%) Query 1 MPLSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTR 60 MPLSSRMP L F++ LAIA GSLG A RELGLTQQAVS RLAS+EAQ GVRL R++R Sbjct 1 MPLSSRMPELAAFDVLLAIARTGSLGAAGRELGLTQQAVSARLASIEAQTGVRLVQRSSR 60 Query 61 GSQLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSL 120 GSQLT AG+VVAEWA +LLEVA +DAGL +LR+E R+ V AS TIAEQLMP W++SL Sbjct 61 GSQLTQAGVVVAEWADQLLEVAQRVDAGLAALRSESHTRLTVAASLTIAEQLMPRWLVSL 120 Query 121 RAADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVV 180 A RRG PEVILTA NSE I AVRDG A+LGFIE+P P GL + VVARDEL+VV Sbjct 121 HADARRRGVPTPEVILTAANSEDVIGAVRDGSAELGFIESPGTPRGLHTRVVARDELIVV 180 Query 181 VPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSS 240 VPPGHKW RRS + EL TPLV+RE SG R++L+ ALR LG D QA P +ELSS Sbjct 181 VPPGHKWDRRSTPIGPAELNDTPLVSREAGSGTREALSTALRRALG-DTTQAAPAIELSS 239 Query 241 AAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAI 300 AAA+RAAV AGAGPA MSRLA+ DDL GRL AV + L+LRR LRA+W G RTPPAGA+ Sbjct 240 AAAMRAAVAAGAGPAVMSRLAVEDDLTLGRLRAVPVAGLDLRRDLRAVWSGTRTPPAGAV 299 Query 301 RDLLSHI 307 RDLL HI Sbjct 300 RDLLGHI 306 >gi|118468440|ref|YP_884954.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118169727|gb|ABK70623.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155] Length=317 Score = 330 bits (845), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 189/309 (62%), Positives = 230/309 (75%), Gaps = 2/309 (0%) Query 1 MPLSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTR 60 M LS+RMP L E+ LA+A GSL A+RE GLTQQA+S R+A++E Q GVRL RT Sbjct 1 MQLSARMPDLMALEVLLAVARKGSLSAASRECGLTQQAISARIAALERQTGVRLVTRTKT 60 Query 61 GSQLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSL 120 GS+LT +G++ A+WA RLL+VA E+DAGL +LR + ++R+ AS T+AEQL+P W++S Sbjct 61 GSRLTSSGVLAAQWADRLLDVAHEVDAGLATLRDNSKTQLRITASLTVAEQLLPRWLVSW 120 Query 121 RAADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVV 180 R A R+GG P++ILTA NSEH +AAVR ADLGFIE+ P GL S VVA DELVVV Sbjct 121 REAVTRQGGPAPDLILTAANSEHVLAAVRGDHADLGFIESRGAPRGLRSSVVAHDELVVV 180 Query 181 VPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSS 240 VPPGH WARRSR ++ ELA TPLVTRE SG R+ L + L+ G +Q P LELSS Sbjct 181 VPPGHTWARRSRPIAPEELAATPLVTREQGSGTREFLASVLKGVAG--AEQVRPALELSS 238 Query 241 AAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAI 300 AAAVRAAVLA AGPA +SRLA+ADDL GRL AVD+ L+LRR LRA+W+G RTPPAGA Sbjct 239 AAAVRAAVLADAGPAVLSRLAVADDLQLGRLRAVDVTGLDLRRALRAVWLGTRTPPAGAA 298 Query 301 RDLLSHITS 309 RDLLSHI S Sbjct 299 RDLLSHIAS 307 >gi|343925862|ref|ZP_08765377.1| putative LysR family transcriptional regulator [Gordonia alkanivorans NBRC 16433] gi|343764213|dbj|GAA12303.1| putative LysR family transcriptional regulator [Gordonia alkanivorans NBRC 16433] Length=305 Score = 261 bits (668), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 161/307 (53%), Positives = 198/307 (65%), Gaps = 5/307 (1%) Query 1 MPLSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTR 60 M LS RMP L E ++ GSL AA ELG+TQQAVS R+ +ME Q+GV L RT R Sbjct 1 MVLSPRMPDLASLETLQSVVSTGSLNAAAAELGVTQQAVSARIRAMETQLGVGLLTRTPR 60 Query 61 GSQLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSL 120 GS T +G +VAEWA RLL +A E DAGL +LR E R R+R+ AS T+AE L+P W++S Sbjct 61 GSVPTQSGRLVAEWADRLLTLAGEFDAGLSALRLERRDRLRLAASLTVAEHLLPRWLVSF 120 Query 121 RAADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVV 180 A + P+V TA NS+H VRDG +LGF+E P GL S +ARDELVVV Sbjct 121 AA----QHDPAPKVSFTAANSDHVCTLVRDGEVELGFVEGPRVAPGLRSRTIARDELVVV 176 Query 181 VPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSS 240 VPP H W R R + A +LA T LVTRE SG R+ AL LG + PVLELS+ Sbjct 177 VPPDHPWTRSRRRIGAADLAGTALVTREEGSGTREFFERALTRALGPSREVTAPVLELST 236 Query 241 AAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAI 300 A+VRAAV+AGAGPA +S L++ADDL RL+ + I L+L RQLRA+W G P AGA Sbjct 237 TASVRAAVIAGAGPAVLSNLSVADDLDR-RLVRIPIDDLDLGRQLRAVWSSGPQPSAGAA 295 Query 301 RDLLSHI 307 RD L+HI Sbjct 296 RDFLAHI 302 >gi|152967693|ref|YP_001363477.1| LysR family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151362210|gb|ABS05213.1| transcriptional regulator, LysR family [Kineococcus radiotolerans SRS30216] Length=307 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 147/299 (50%), Positives = 187/299 (63%), Gaps = 3/299 (1%) Query 6 RMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTRGSQLT 65 R+P LT +F+A+ E GS+G AR +G+TQQ+ S RL +EAQ+G L R+ +GS T Sbjct 5 RVPDLTSLRLFVAVVETGSIGAGARSVGITQQSASDRLRGVEAQVGAALLRRSRQGSVPT 64 Query 66 PAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSLRAADM 125 AG+V+A WAARLL+ A E+ G+ +LR R+RV +S TIAE L+P W+L LR Sbjct 65 EAGVVLAGWAARLLDAAAEVAEGIATLRAGSAARLRVASSMTIAEHLVPRWLLVLRQRAT 124 Query 126 RRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVVVPPGH 185 G P V LTATNS H +AAV G DLGF+E P P GL S +A D LVVVV PGH Sbjct 125 SAGAVPPAVELTATNSVHVLAAVERGDVDLGFVEGPSVPRGLRSRPLAEDHLVVVVAPGH 184 Query 186 KWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSSAAAVR 245 W RR R V+ +ELA T LV+RE SG R+ L ++ PP +EL++A +VR Sbjct 185 PWTRRRRPVTPQELAATALVSREAGSGTREVLE---NALAAAGLRAGPPAVELTTATSVR 241 Query 246 AAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAIRDLL 304 AV AG G A +SRLA+ DDL GRL AV + L+L R LRA+W G P G RDLL Sbjct 242 EAVRAGTGVAVLSRLAVTDDLDAGRLRAVPVEGLDLGRTLRAVWAGPARLPPGPARDLL 300 >gi|116662087|ref|YP_829142.1| LysR family transcriptional regulator [Arthrobacter sp. FB24] gi|116612839|gb|ABK05561.1| transcriptional regulator, LysR family [Arthrobacter sp. FB24] Length=317 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 148/301 (50%), Positives = 191/301 (64%), Gaps = 2/301 (0%) Query 3 LSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTRGS 62 LS R+P L+ E+ A+ + GSL A + LGL+QQAVS R+ S+E+QIG L RT RGS Sbjct 2 LSPRIPELSALEMLAAVHDLGSLSAAGKYLGLSQQAVSSRMRSLESQIGFVLLTRTPRGS 61 Query 63 QLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSLRA 122 LT +G +VA WAA +L + +DAG+ SLR++ ++++V ASQTIAE L+P W+++LR Sbjct 62 TLTESGELVAGWAAEVLAAGERLDAGIASLRSDTARQLKVAASQTIAEHLLPLWLVALRR 121 Query 123 ADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVVVP 182 G T V L NSE +A VR G A +GFIE+P P L + V D+LV+VV Sbjct 122 QQESLGLTPTVVELAVNNSEATVALVRSGQAAIGFIESPHLPPDLSTAAVQDDDLVLVVA 181 Query 183 PGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSSAA 242 P H WARR V+A ELA T LVTRE SG RD+L L T A P++ELS+ A Sbjct 182 PRHPWARRRTPVTAGELAATALVTREHGSGTRDALEHLL--TTAGTANLAEPLVELSTTA 239 Query 243 AVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAIRD 302 AVR+A+ AG P +S LA+ DDLA RL+AV + L LRR L AIW G TPP G RD Sbjct 240 AVRSAIAAGTAPGVLSALAVRDDLALHRLVAVPVRGLPLRRALTAIWQTGPTPPPGPPRD 299 Query 303 L 303 L Sbjct 300 L 300 >gi|297198465|ref|ZP_06915862.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|297147104|gb|EDY61424.2| transcriptional regulator [Streptomyces sviceus ATCC 29083] Length=308 Score = 236 bits (601), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 152/303 (51%), Positives = 192/303 (64%), Gaps = 13/303 (4%) Query 3 LSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTRGS 62 LS R+P L E+ LA+A GSLGGAARE+G+TQ A S R+ SME Q+GV L R+ RGS Sbjct 15 LSHRVPDLGALELLLAVARLGSLGGAAREVGITQPAASSRIRSMERQLGVALVDRSPRGS 74 Query 63 QLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSLRA 122 +LT AG +V +WA R++E A+ DAG +LR R+RVVAS TIAE L+P W+L+LRA Sbjct 75 RLTDAGALVTDWARRIVEAAEAFDAGAQALRDRRDSRLRVVASMTIAEYLLPGWLLALRA 134 Query 123 ADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVVVP 182 G V L A NS + ADLGF+E P+GL SVV+A D L+VV Sbjct 135 -----GRPDTAVSLHAGNSATVAERLLSDEADLGFVEGLTVPSGLDSVVIAHDHLIVVTA 189 Query 183 PGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSSAA 242 PGH WARRSR + A ELA TPL+ RE SG R L AAL A P++ELSS Sbjct 190 PGHVWARRSRPLEAAELAATPLILREKGSGTRQVLDAALGGL-------ARPLIELSSTT 242 Query 243 AVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAIRD 302 AV+AA ++GAGPA +S LA+ ++LA RL+ V + ++L R LRA+W G P G RD Sbjct 243 AVKAAAVSGAGPAVLSELAVGEELALRRLVRVPVAGVSLARDLRAVWPTGHR-PVGPARD 301 Query 303 LLS 305 LLS Sbjct 302 LLS 304 >gi|328881260|emb|CCA54499.1| Transcriptional regulator, LysR family [Streptomyces venezuelae ATCC 10712] Length=336 Score = 233 bits (593), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 151/310 (49%), Positives = 189/310 (61%), Gaps = 10/310 (3%) Query 3 LSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTRGS 62 L R+P L E+ LA+A GSLG AARE+G+TQ A S R+ SME Q+GV L R+ RGS Sbjct 36 LHHRVPDLGALELLLAVARHGSLGAAAREVGITQPAASSRIRSMERQLGVALVDRSPRGS 95 Query 63 QLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSLRA 122 +LT AG +V +WA R++E A+ DAG +LR R+RV AS TIAE L+P W+++LRA Sbjct 96 RLTDAGALVTDWARRIVEAAEAFDAGAQALRGRRDSRLRVAASMTIAEYLLPGWLIALRA 155 Query 123 ADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVVVP 182 R T V L A NS + AD+GF+E P GL VVVA D L VV Sbjct 156 ---ERPDTA--VSLQAGNSAVVAERLLANEADIGFVEGLAVPDGLDGVVVAHDRLAVVAA 210 Query 183 PGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSSAA 242 P H WARR + ELA TPLV RE SG R L AAL G A P+LEL+S Sbjct 211 PTHPWARRRGPLDPAELAATPLVLRERGSGTRQVLDAALSAHGG----LAQPLLELASTT 266 Query 243 AVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAIRD 302 AV+AA ++GAGPA +S LAIA++LA RL+A+ + + LRR LRA+W G P G RD Sbjct 267 AVKAAAVSGAGPAVLSELAIAEELASRRLVAIPVGGVQLRRDLRAVWPAGHR-PTGPARD 325 Query 303 LLSHITSRST 312 LLS +R T Sbjct 326 LLSLTRARPT 335 >gi|294628451|ref|ZP_06707011.1| transcriptional regulator [Streptomyces sp. e14] gi|292831784|gb|EFF90133.1| transcriptional regulator [Streptomyces sp. e14] Length=320 Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 149/305 (49%), Positives = 190/305 (63%), Gaps = 17/305 (5%) Query 3 LSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTRGS 62 L+ R+P L E+ LA+A GSLGGAARELG+TQ A S R+ SME Q+G+ L R+ RGS Sbjct 24 LAHRVPDLGALELLLAVARLGSLGGAARELGITQPAASSRIRSMERQLGLALVDRSPRGS 83 Query 63 QLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSLRA 122 +LT AG +V +WA R++E A+ DAG +LR R+RV AS TIAE L+P W+++LR Sbjct 84 RLTDAGALVTDWARRVVEAAEAFDAGTQALRDRRDSRLRVAASMTIAEYLLPGWLIALR- 142 Query 123 ADMRRGGTVPE--VILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVV 180 G P+ V L A NS + G ADLGF+E P GL SVV+A D L+VV Sbjct 143 ------GHRPDTAVSLLAGNSATVAERLLAGEADLGFVEGVSVPAGLDSVVIAHDRLIVV 196 Query 181 VPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSS 240 P H WARR R + A ELA TPL+ RE SG R L AAL A P++ELSS Sbjct 197 AAPAHPWARRRRPLDAAELAATPLILREKGSGTRQVLDAALGGL-------ARPLIELSS 249 Query 241 AAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAI 300 AV+AA ++GAGPA +S LA+ D+L RL+ V + + LRR LRA+W G PAG Sbjct 250 TTAVKAAAVSGAGPAVLSELAVGDELTLRRLVTVPVEGVALRRALRAVWPAGHR-PAGPA 308 Query 301 RDLLS 305 R+LLS Sbjct 309 RELLS 313 >gi|302550266|ref|ZP_07302608.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] gi|302467884|gb|EFL30977.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] Length=309 Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 150/303 (50%), Positives = 190/303 (63%), Gaps = 13/303 (4%) Query 3 LSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTRGS 62 L+ R+P L E+ LA+A GSLGGAARELG+TQ A S R+ SME Q+GV L R+ RGS Sbjct 16 LAHRVPDLGALELLLAVARLGSLGGAARELGITQPAASSRVRSMERQLGVALVDRSPRGS 75 Query 63 QLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSLRA 122 +LT AG +V +WA R++E A+ D G +LR R+RV AS TIAE L+P W+L+LRA Sbjct 76 RLTDAGALVTDWARRIVEAAEAFDVGAQALRDRRDSRLRVAASMTIAEYLLPGWLLALRA 135 Query 123 ADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVVVP 182 +R T V L A NS + ADLGF+E PTGL SVV+A D L+VV Sbjct 136 ---QRPDTA--VSLHAGNSTVVAERLLSDEADLGFVEGLTVPTGLDSVVIAHDRLIVVTA 190 Query 183 PGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSSAA 242 PGH W+RR R + A ELA TPL+ RE SG R L AAL A P++ELSS Sbjct 191 PGHAWSRRRRALEASELAATPLILREKGSGTRQVLDAALGGL-------ARPLIELSSTT 243 Query 243 AVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAIRD 302 AV+AA ++GAGPA +S LA+ ++LA RL+ V + + L R LRA+W G P G RD Sbjct 244 AVKAAAVSGAGPAVLSELAVGEELAMRRLVRVPVEGVALARDLRAVWPTGHR-PTGPARD 302 Query 303 LLS 305 LLS Sbjct 303 LLS 305 >gi|290961718|ref|YP_003492900.1| transcriptional regulator [Streptomyces scabiei 87.22] gi|260651244|emb|CBG74366.1| putative transcriptional regulator [Streptomyces scabiei 87.22] Length=307 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 147/303 (49%), Positives = 189/303 (63%), Gaps = 13/303 (4%) Query 3 LSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTRGS 62 L+ R+P L E+ LA+A GSLG AARELG+TQ A S R+ SME Q+GV L R+ RGS Sbjct 10 LAHRVPDLGALELLLAVARLGSLGRAARELGITQPAASSRIRSMERQLGVALVDRSPRGS 69 Query 63 QLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSLRA 122 +LT AG +V +WA R++E A+ DAG +LR R+RV AS TIAE L+P W+L+LRA Sbjct 70 RLTDAGALVTDWARRIVEAAEAFDAGAQALRDRRDSRLRVAASMTIAEYLLPGWLLALRA 129 Query 123 ADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVVVP 182 A R T V L A NS + ADLGF+E P P GL + V+A D L+VV Sbjct 130 A---RPDTA--VSLLAGNSTVVAERLLADEADLGFVEGPTVPAGLDAAVIAHDHLIVVTA 184 Query 183 PGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSSAA 242 PGH WARR + V A ELA TPL+ RE SG R L AL A P++ELSS Sbjct 185 PGHPWARRRKPVEAAELAATPLILREKGSGTRQVLEGALGSL-------ARPLIELSSTT 237 Query 243 AVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAIRD 302 AV+++ L+GAGPA +S LA+ ++L+ RL+ + + + LRR LRA+W G P G RD Sbjct 238 AVKSSALSGAGPAVLSELALGEELSARRLVPIPVHGVRLRRSLRAVWPTGHR-PTGPARD 296 Query 303 LLS 305 LLS Sbjct 297 LLS 299 >gi|291450438|ref|ZP_06589828.1| LysR-family transcriptional regulator [Streptomyces albus J1074] gi|291353387|gb|EFE80289.1| LysR-family transcriptional regulator [Streptomyces albus J1074] Length=313 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 143/300 (48%), Positives = 190/300 (64%), Gaps = 13/300 (4%) Query 6 RMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTRGSQLT 65 RMP L ++ LA+A GSLG AA ELG++Q A S R+ +ME +G+ L R+ RGS+LT Sbjct 24 RMPALGSLQLLLAVARLGSLGRAAEELGISQPAASGRVRAMERDLGLALVDRSPRGSRLT 83 Query 66 PAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSLRAADM 125 PAG +V +WA R++E + DAG+ +LR R+RV AS TIAE L+P W+++LR Sbjct 84 PAGALVTDWAGRVVEASAAFDAGVQALRDRRDARLRVAASLTIAEYLLPGWLIALRPL-- 141 Query 126 RRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVVVPPGH 185 R T V L A NSE A + DG ADLGF+E P P GL +V VARD LVVV PGH Sbjct 142 -RPATA--VSLRAGNSEAVAALLLDGEADLGFVEGPAVPAGLDAVTVARDRLVVVTAPGH 198 Query 186 KWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSSAAAVR 245 W RR+ + A EL+ PL+ RE SG R L A+ A P+LEL+S A++ Sbjct 199 PWTRRTAPLDAAELSGRPLILREEGSGTRQVLAEAVGGL-------AAPLLELASTTALK 251 Query 246 AAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAIRDLLS 305 AAV +GAGPA +S LA++D+LA GRL+ + + + L R+LRA+W G PP G RDLL+ Sbjct 252 AAVASGAGPAVLSELAVSDELAAGRLVKIPVEGVRLTRELRAVWPAGH-PPVGPARDLLA 310 >gi|302533501|ref|ZP_07285843.1| LysR family transcriptional regulator [Streptomyces sp. C] gi|302442396|gb|EFL14212.1| LysR family transcriptional regulator [Streptomyces sp. C] Length=306 Score = 226 bits (575), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 149/307 (49%), Positives = 191/307 (63%), Gaps = 14/307 (4%) Query 1 MPLSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTR 60 +PL+ R+P L E+ L +A GSL GAAR LG+TQ A S R+ +MEA++GV L R+ R Sbjct 7 VPLAHRVPDLGALELLLTVARVGSLSGAARRLGITQPAASSRIRAMEARLGVALVDRSPR 66 Query 61 GSQLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSL 120 GS LT G +V +WA R++E A+ DAG +LR R+RV AS TIAE L+P W+++L Sbjct 67 GSTLTAEGALVTDWARRVVEAAEAFDAGAQALRGRRDSRLRVAASMTIAEYLLPGWLIAL 126 Query 121 RAADMRRGGTVPE--VILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELV 178 R G P+ V L A NS V ADLGF+E P GL S V+A+D LV Sbjct 127 R-------GERPDTAVSLHAGNSADVAQRVLAHEADLGFVEGLSVPDGLDSAVIAQDRLV 179 Query 179 VVVPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLEL 238 V V P H WARRS+ V ELA++PL+ RE SG R L AAL + G A P+LEL Sbjct 180 VAVAPTHPWARRSKGVEPAELARSPLILRERGSGTRQVLDAALAPSGG----LAQPLLEL 235 Query 239 SSAAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAG 298 +S AV+AA L+GAGP +S LA+ D+LA RL++V +P L R LRA+W G T PAG Sbjct 236 ASTTAVKAAALSGAGPCVLSELALVDELAARRLVSVPVPGAALARALRAVWPTG-TRPAG 294 Query 299 AIRDLLS 305 RDLLS Sbjct 295 PARDLLS 301 >gi|312140793|ref|YP_004008129.1| lysr family transcriptional regulator [Rhodococcus equi 103S] gi|325675572|ref|ZP_08155256.1| LysR family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|311890132|emb|CBH49450.1| putative LysR family transcriptional regulator [Rhodococcus equi 103S] gi|325553543|gb|EGD23221.1| LysR family transcriptional regulator [Rhodococcus equi ATCC 33707] Length=300 Score = 221 bits (564), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 131/297 (45%), Positives = 171/297 (58%), Gaps = 12/297 (4%) Query 6 RMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTRGSQLT 65 R P L E+ + + + GSL A+R G+ Q SR + +E Q+G+ L R T GS LT Sbjct 4 RWPDLDVLELLVGVDDHGSLSAASRNAGMAQPNGSRAIKQLERQLGMPLLDRRTTGSTLT 63 Query 66 PAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSLRAADM 125 P G VV WA RLL+ A + LR E + + AS T+AE L+P W+ R D Sbjct 64 PQGTVVVHWARRLLDEAHRLLDVADGLRAERSAELTIGASMTVAEHLLPGWLGRFRGLDA 123 Query 126 RRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVVVPPGH 185 + L NS + G D+GF+E+P P L SV VARDELVVVV PGH Sbjct 124 D-----VTIHLQVLNSTQVFERLESGACDVGFVESPTLPRSLHSVTVARDELVVVVHPGH 178 Query 186 KWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSSAAAVR 245 W RR + ++ ELAQTPLV REP SG R +L AL +D+ + PP+LEL SAAA+R Sbjct 179 PWTRRRKPITVAELAQTPLVVREPGSGTRTTLDVAL-----QDLPRTPPLLELGSAAAIR 233 Query 246 AAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGR--TPPAGAI 300 +++AG GPA MS LA+AD +A G L VD+ L L R LRA+W G R + PAG + Sbjct 234 TSIIAGVGPAVMSTLAVADQVAAGELKVVDVDGLVLERSLRAVWRGPRQLSGPAGDL 290 >gi|256390541|ref|YP_003112105.1| LysR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356767|gb|ACU70264.1| transcriptional regulator, LysR family [Catenulispora acidiphila DSM 44928] Length=299 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 134/290 (47%), Positives = 185/290 (64%), Gaps = 10/290 (3%) Query 5 SRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTRGSQL 64 +R+P L ++ +A+A+ GSLG AA G++Q + S R+A++E ++G++L RTT GS+L Sbjct 2 TRLPDLDALQLLVAVADTGSLGKAAARTGISQPSASARMATLERRLGLKLLARTTSGSRL 61 Query 65 TPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSLRAAD 124 T G +V +WA R+LE A+ + G +LRT +R+ V AS TIAE LMP W++ LR Sbjct 62 TSDGAMVTDWARRVLEQAEALVEGAEALRTHADERLAVAASLTIAEHLMPTWLIELR--Q 119 Query 125 MRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVVVPPG 184 +R V LT NS +AA+R G +LGF+E P P L S VV RD LVVVV P Sbjct 120 LR---PAIRVGLTVENSHQVVAALRAGQVELGFVEGPWVPRDLHSAVVGRDRLVVVVAPA 176 Query 185 HKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSSAAAV 244 H WARR ++A ELA PL+ REP SG R+ L AAL G A P++EL + A + Sbjct 177 HPWARRKEPLTAAELAAEPLLLREPGSGTREVLEAALSAHDG----PAVPLIELGATAPL 232 Query 245 RAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPA-LNLRRQLRAIWVGGR 293 R+A L+G+GPA +S LA+A+D+A GRL V + + LRR LRA+WV GR Sbjct 233 RSAALSGSGPAVLSVLAVAEDIAAGRLAEVPLAEDVALRRTLRAVWVRGR 282 >gi|345011597|ref|YP_004813951.1| LysR family transcriptional regulator [Streptomyces violaceusniger Tu 4113] gi|344037946|gb|AEM83671.1| transcriptional regulator, LysR family [Streptomyces violaceusniger Tu 4113] Length=310 Score = 219 bits (558), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 141/303 (47%), Positives = 185/303 (62%), Gaps = 13/303 (4%) Query 5 SRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTRGSQL 64 S++P L + + + + GSL AA LGL Q + S+RL+++E ++G+ L RT RGSQL Sbjct 2 SQLPDLESLRLLVLVGDVGSLSRAAARLGLAQPSASKRLSTLERRLGLVLVERTRRGSQL 61 Query 65 TPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSLRAAD 124 T AG VA WA ++L+ D + G +LRT+ +RV AS T+AE L+P W+ LR Sbjct 62 TDAGRAVAVWAQQVLQDLDGLLTGAEALRTKRDAELRVAASMTVAEYLVPGWLGELR--R 119 Query 125 MRRGGTVPEVI--LTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVVVP 182 MR PE+ L TNSEH +R G DLGFIE+P P GL + VA D L+VVV Sbjct 120 MR-----PELYVGLQVTNSEHVPELLRSGAVDLGFIESPQAPAGLPARRVAHDRLLVVVA 174 Query 183 PGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSSAA 242 PGH WARR R + ELA PLV RE SG R++L ALR M + P+LEL SA Sbjct 175 PGHPWARRRRPLGVAELAAAPLVLRERGSGTRETLDQALRRA---GMAEPRPLLELGSAT 231 Query 243 AVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAIRD 302 AVR AV+AG GPA +S LA+ DLA RL+AV++ + L R LRA+W R P AG + Sbjct 232 AVRNAVMAGTGPAVISELAVRTDLADRRLVAVEVEGIKLHRALRAVWASER-PLAGPAAE 290 Query 303 LLS 305 LL+ Sbjct 291 LLA 293 >gi|84498377|ref|ZP_00997174.1| Probable transcription regulator (lysR family) [Janibacter sp. HTCC2649] gi|84381877|gb|EAP97760.1| Probable transcription regulator (lysR family) [Janibacter sp. HTCC2649] Length=309 Score = 219 bits (558), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 140/302 (47%), Positives = 187/302 (62%), Gaps = 3/302 (0%) Query 3 LSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTRGS 62 + SR+P +T + + IA GS+ GAAR ++QQA S RL +EAQ+G+ L R +RGS Sbjct 1 MPSRVPDVTGLRLIVGIARHGSIAGAARGAAISQQAASERLRGIEAQMGLTLVHRGSRGS 60 Query 63 QLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSLRA 122 +LTPAG VVA+WAARLL++ DEID + LR + + + V +S TIAE L+P W++ LR Sbjct 61 RLTPAGEVVAQWAARLLDLTDEIDGAIDGLRGDRGRDLTVWSSMTIAENLLPRWLVLLRE 120 Query 123 ADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVVVP 182 + V LTA NS H I AVR G A LGF+E PPTGL + +ARDELV+V Sbjct 121 RQLAAAEPATTVSLTADNSGHVIEAVRSGAAHLGFVEGVEPPTGLRHLDLARDELVLVTA 180 Query 183 PGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSSAA 242 G +RR ++ +++ PL +RE SG RD + AL + A V+E ++A Sbjct 181 AGSPLSRRRTPLTPTDISLLPLTSRERGSGTRDVIEHAL---AAHGLTMADSVVEHTTAT 237 Query 243 AVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAIRD 302 AVR AVLAG PA +SR A+A +LA G L V P L L R RA+WVGGR PPAG R+ Sbjct 238 AVREAVLAGGSPAFLSRRAMARELASGHLAVVPTPGLGLDRVFRAVWVGGRNPPAGPARE 297 Query 303 LL 304 L+ Sbjct 298 LV 299 >gi|312140796|ref|YP_004008132.1| lysr family transcriptional regulator [Rhodococcus equi 103S] gi|325675569|ref|ZP_08155253.1| LysR family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|311890135|emb|CBH49453.1| putative LysR family transcriptional regulator [Rhodococcus equi 103S] gi|325553540|gb|EGD23218.1| LysR family transcriptional regulator [Rhodococcus equi ATCC 33707] Length=297 Score = 218 bits (556), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 139/313 (45%), Positives = 187/313 (60%), Gaps = 18/313 (5%) Query 1 MPLSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTR 60 MPLS+R+P L ++ +A+ GS+G A RE GL+QQAVS R+ S E Q+G+R+ R Sbjct 1 MPLSNRVPELAALDVLVAVGRLGSMGAAGREHGLSQQAVSARVRSAERQLGLRVFDRGAG 60 Query 61 GSQLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSL 120 G Q T G ++ EWA+ +L+ A+E+ +G+ +LR E + V AS TIAE L+P W ++ Sbjct 61 GVQPTAEGALILEWASAILDSAEEMASGVAALRGERDANLTVAASMTIAEYLVPGWTVA- 119 Query 121 RAADMRRGGTVPEVILTA--TNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELV 178 MRR P V+ + NS A VR G ADLGF+E P P GL +V VA DELV Sbjct 120 ----MRR--KYPNVVTSVRLLNSTDVAAQVRAGEADLGFVEGPTAPDGLRAVEVAHDELV 173 Query 179 VVVPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLEL 238 V+VPP HKW R+ + ELA TPL+ REP SG R +L A+ + P+LEL Sbjct 174 VIVPPDHKWIARAP-IDPSELAATPLIQREPGSGTRTTLEHAVPGCVD-------PLLEL 225 Query 239 SSAAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAG 298 +S AV+AAV+AG PA +S LA+ DL GRL +V + L + R+L A+W G R G Sbjct 226 TSCTAVKAAVVAGNAPAVVSSLAVEADLHDGRLASVPVQGLRMPRRLLAVWDGSRG-LRG 284 Query 299 AIRDLLSHITSRS 311 A RD L RS Sbjct 285 AARDFLDIACGRS 297 >gi|326780352|ref|ZP_08239617.1| transcriptional regulator, LysR family [Streptomyces cf. griseus XylebKG-1] gi|326660685|gb|EGE45531.1| transcriptional regulator, LysR family [Streptomyces griseus XylebKG-1] Length=311 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 146/305 (48%), Positives = 185/305 (61%), Gaps = 14/305 (4%) Query 3 LSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTRGS 62 LS R+P L E+ LA+A GSLG AAR++G+TQ A S R+ SME Q+GV L R+ RGS Sbjct 13 LSHRVPDLGALELLLAVARHGSLGRAARDVGITQPAASSRVRSMERQLGVALLDRSPRGS 72 Query 63 QLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSLRA 122 +LT AG +V +WA R++E A+ DAG +LR R+RV AS TIAE L+P W+++LR Sbjct 73 RLTDAGALVTDWARRVVEAAEAFDAGAQALRDRRDSRLRVAASMTIAEYLLPGWLIALR- 131 Query 123 ADMRRGGTVPE--VILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVV 180 G P+ V L NS + G ADLGF+E P GL V+A D LVVV Sbjct 132 ------GERPDTAVSLLVGNSAAVARRLVTGEADLGFVEGLSIPEGLDGTVIAHDRLVVV 185 Query 181 VPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSS 240 V P H WARR + ELA TPL+ RE SG R L AAL G A P+LELSS Sbjct 186 VAPSHPWARRRTPLLPGELAATPLILREHGSGTRQVLDAALAVHGG----LAQPLLELSS 241 Query 241 AAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAI 300 AV+ A +GAGP +S LA+ ++L+ RL+ V + + LRRQLRA+W GG P G Sbjct 242 TTAVKGAAESGAGPCVLSELALGEELSSRRLVKVPVAGVRLRRQLRAVWPGGHR-PTGPA 300 Query 301 RDLLS 305 RDLLS Sbjct 301 RDLLS 305 >gi|182439688|ref|YP_001827407.1| LysR family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178468204|dbj|BAG22724.1| putative LysR-family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length=311 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 146/305 (48%), Positives = 185/305 (61%), Gaps = 14/305 (4%) Query 3 LSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTRGS 62 LS R+P L E+ LA+A GSLG AAR++G+TQ A S R+ SME Q+GV L R+ RGS Sbjct 13 LSHRVPDLGALELLLAVARHGSLGRAARDVGITQPAASSRVRSMERQLGVALLDRSPRGS 72 Query 63 QLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSLRA 122 +LT AG +V +WA R++E A+ DAG +LR R+RV AS TIAE L+P W+++LR Sbjct 73 RLTDAGALVTDWARRVVEAAEAFDAGAQALRDRRDSRLRVAASMTIAEYLLPGWLIALR- 131 Query 123 ADMRRGGTVPE--VILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVV 180 G P+ V L NS + G ADLGF+E P GL V+A D LVVV Sbjct 132 ------GERPDTAVSLLVGNSAAVARRLVTGEADLGFVEGLSIPEGLDGTVIAHDRLVVV 185 Query 181 VPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSS 240 V P H WARR + ELA TPL+ RE SG R L AAL G A P+LELSS Sbjct 186 VAPSHPWARRRTPLLPGELAATPLILREHGSGTRQVLDAALAVHGG----LAQPLLELSS 241 Query 241 AAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAI 300 AV+ A +GAGP +S LA+ ++L+ RL+ V + + LRRQLRA+W GG P G Sbjct 242 TTAVKGAAESGAGPCVLSELALGEELSSRRLVKVPVAGVRLRRQLRAVWPGGHR-PTGPA 300 Query 301 RDLLS 305 RDLLS Sbjct 301 RDLLS 305 >gi|337762726|emb|CCB71434.1| conserved protein of unknown function [Streptomyces cattleya NRRL 8057] Length=319 Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 138/295 (47%), Positives = 181/295 (62%), Gaps = 12/295 (4%) Query 1 MPLSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTR 60 +PL R P L + + +A+ GSLG AA L ++Q + SRRL+++E +G+ L RT R Sbjct 10 VPLPPRTPDLESLRLLVLVADLGSLGRAAERLRISQPSASRRLSTLERGLGLVLVDRTRR 69 Query 61 GSQLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSL 120 GS+LT AG VVA A R+L+ DE+ AG G LR +RV AS TIAE L+P W+ L Sbjct 70 GSRLTLAGQVVAGHARRVLDELDELLAGAGKLRDRREAELRVAASLTIAEYLLPVWISRL 129 Query 121 RAADMRRGGTVPEVI--LTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELV 178 R G PE+ L TNSE+ V G AD+GFIE P + + VA D LV Sbjct 130 R-------GRRPELYIGLQVTNSENVPELVESGEADIGFIEGPRLSRVMSTRQVAEDRLV 182 Query 179 VVVPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLEL 238 VVV PGH WARR +SAREL++TPLV RE SG R +L AL E ++ P++EL Sbjct 183 VVVDPGHPWARRQEPLSARELSRTPLVLRESGSGTRQTLDRALYLAGCERVR---PLVEL 239 Query 239 SSAAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGR 293 S AAVR AV+AG GP+ +S LA+ D+A GRL+ VD+ ++L R LRA+W GR Sbjct 240 GSTAAVRGAVIAGTGPSVLSELAVRGDIAEGRLVGVDVAGVDLTRDLRAVWPTGR 294 >gi|320011773|gb|ADW06623.1| transcriptional regulator, LysR family [Streptomyces flavogriseus ATCC 33331] Length=310 Score = 216 bits (550), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 148/310 (48%), Positives = 191/310 (62%), Gaps = 12/310 (3%) Query 3 LSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTRGS 62 L+ R+P L + LA+A GSLG AA+E+G++Q A S R+ SME Q+GV L R+ RGS Sbjct 11 LTHRVPDLGAMVLLLAVARHGSLGRAAKEVGISQPAASGRIRSMERQLGVALLDRSPRGS 70 Query 63 QLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSLRA 122 +LT AG +V +WA R++E A+ DAG +LR R+RV AS TIAE L+P W+++LRA Sbjct 71 RLTDAGALVTDWARRVVEAAEAFDAGAQALRDRRDSRLRVAASMTIAEYLLPGWLIALRA 130 Query 123 ADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVVVP 182 R GT V L A NS + G ADLGF+E P GL V+A D LVVVV Sbjct 131 ---ERPGTA--VSLLAGNSAAVALRLLAGEADLGFVEGLSTPEGLDGTVIAHDRLVVVVA 185 Query 183 PGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSSAA 242 P H WARR R+ ELA+ PL+ RE SG R L AAL G A P+LELSS Sbjct 186 PSHPWARRERLTPG-ELAEAPLILREHGSGTRQVLDAALAVHGG----LARPLLELSSTT 240 Query 243 AVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAIRD 302 AV+ A +GAGP +S LA+ ++L+ RL+ V + + LRRQLRA+W G P G RD Sbjct 241 AVKGAAGSGAGPCVLSELALGEELSARRLVKVPVAGVRLRRQLRAVWPAGHR-PTGPARD 299 Query 303 LLSHITSRST 312 LLS +T+R T Sbjct 300 LLS-LTARET 308 >gi|344998649|ref|YP_004801503.1| LysR family transcriptional regulator [Streptomyces sp. SirexAA-E] gi|344314275|gb|AEN08963.1| transcriptional regulator, LysR family [Streptomyces sp. SirexAA-E] Length=328 Score = 216 bits (549), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 145/303 (48%), Positives = 186/303 (62%), Gaps = 10/303 (3%) Query 3 LSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTRGS 62 L R+P L + L++A GSLG AAR++G+TQ A S R+ SME Q+GV L R+ RGS Sbjct 24 LPHRVPDLGAMVLLLSVARHGSLGRAARDVGITQPAASSRIRSMERQLGVALLDRSPRGS 83 Query 63 QLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSLRA 122 +LT AG +V +WA R++E A+ DAG +LR R+RV AS TIAE LMP W+++LRA Sbjct 84 RLTDAGALVTDWARRVVEAAEAFDAGAQALRDRRDSRLRVAASMTIAEYLMPGWLIALRA 143 Query 123 ADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVVVP 182 R T V L A NS + G ADLGF+E P GL V+A D LVVVV Sbjct 144 ---DRPDTA--VSLLAGNSAAVALRLLAGEADLGFVEGLSVPEGLDGTVIAHDRLVVVVA 198 Query 183 PGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSSAA 242 P H WARR ++ RELA TPL+ RE SG R L AAL G + P+LELSS Sbjct 199 PSHPWARRRTQLTPRELAATPLILREHGSGTRQVLDAALAVHGGLAL----PLLELSSTT 254 Query 243 AVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAIRD 302 AV+ A +GAGP +S LA+ ++L+ RL+ + + + LRRQLRA+W G PAG RD Sbjct 255 AVKGAAESGAGPCVLSELALDEELSARRLVEIPVAGVRLRRQLRAVWPAGHR-PAGPARD 313 Query 303 LLS 305 LLS Sbjct 314 LLS 316 >gi|302518085|ref|ZP_07270427.1| LysR family transcriptional regulator [Streptomyces sp. SPB78] gi|302426980|gb|EFK98795.1| LysR family transcriptional regulator [Streptomyces sp. SPB78] Length=317 Score = 215 bits (548), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 137/305 (45%), Positives = 185/305 (61%), Gaps = 14/305 (4%) Query 3 LSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTRGS 62 L+ R+P L E+ LA+ GSLG AARELG+TQ A S R+ S+E Q+GV L R+ RGS Sbjct 19 LARRVPDLGLLEVLLAVDRLGSLGRAARELGITQPAASGRVRSLERQLGVGLVARSPRGS 78 Query 63 QLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSLRA 122 +LTP G++VA WA R+ E A+ DAG +LR R+RV AS TI E L+P W+++LRA Sbjct 79 RLTPTGLLVAGWARRVTEAAEAFDAGARALRGRRDSRLRVAASMTIGEYLLPGWLVALRA 138 Query 123 ADMRRGGTVPE--VILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVV 180 P+ V L A ++ + + DG ADLGF+E P G V+ARD L+V+ Sbjct 139 VR-------PDTAVSLRAGSTRMVVEGLLDGEADLGFVEGLGVPAGTDGAVIARDRLLVL 191 Query 181 VPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSS 240 V PGH W + + LA TPL+ RE SG R+ L AAL G D P+LELSS Sbjct 192 VRPGHPWTALTGGLDPALLATTPLILREEGSGTREVLDAALAPYGGPDR----PLLELSS 247 Query 241 AAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAI 300 A+++A L+G GPA +S L + +++A G L+ V + + L R LRA+W G P+GA Sbjct 248 TTALKSAALSGVGPAVLSELVVGEEVAAGALVPVPVRGVGLGRVLRAVWRRGER-PSGAA 306 Query 301 RDLLS 305 RDLLS Sbjct 307 RDLLS 311 >gi|29833264|ref|NP_827898.1| LysR family transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29610386|dbj|BAC74433.1| putative LysR-family transcriptional regulator [Streptomyces avermitilis MA-4680] Length=306 Score = 215 bits (548), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 145/302 (49%), Positives = 189/302 (63%), Gaps = 13/302 (4%) Query 3 LSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTRGS 62 L+ R+P L E+ LA+A GSLG AARELG+TQ A S R+ SME Q+GV L R+ RGS Sbjct 13 LAHRVPELGALELLLAVARLGSLGRAARELGITQPAASSRIRSMERQLGVALVDRSPRGS 72 Query 63 QLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSLRA 122 +LT AG +V +WA R++E A+ DAG +LR R+RV AS TIAE L+P W+++LRA Sbjct 73 RLTEAGALVTDWARRIVEAAEAFDAGAQALRGRRDSRLRVAASMTIAEYLLPGWLIALRA 132 Query 123 ADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVVVP 182 +R T V L A NS + ADLGF+E P GL S V+A D L+VV Sbjct 133 ---QRPDTA--VSLLAGNSAVVAERLLADEADLGFVEGLSVPAGLDSTVIAHDRLIVVTA 187 Query 183 PGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSSAA 242 PGH WARR R +SA ELA TPL+ RE SG R L AAL A P++ELSS Sbjct 188 PGHPWARRRRPLSAAELAATPLILREEGSGTRQVLDAALGGL-------ARPLIELSSTT 240 Query 243 AVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAIRD 302 AV+A+ ++GAGPA +S LA+ ++L+ RL+++ + + L R LRA+W G P G RD Sbjct 241 AVKASAVSGAGPAVLSELALGEELSARRLVSIPVAEVRLGRALRAVWRSGHR-PTGPARD 299 Query 303 LL 304 LL Sbjct 300 LL 301 >gi|226305475|ref|YP_002765435.1| LysR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226184592|dbj|BAH32696.1| putative LysR family transcriptional regulator [Rhodococcus erythropolis PR4] Length=303 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 133/306 (44%), Positives = 188/306 (62%), Gaps = 18/306 (5%) Query 1 MPLSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTR 60 M LS R+P L+ ++ L++ GS+G A RE GL+QQAVS R+ S+E Q+G+++ R Sbjct 1 MSLSPRVPELSALDVLLSVGRLGSMGAAGREHGLSQQAVSARVRSVERQLGIKVFDRAAT 60 Query 61 GSQLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSL 120 G + T G ++ EWA+ +L A+E+ +G+ +LR E + V AS TIAE L+P W +++ Sbjct 61 GVRPTAEGGLILEWASHILVSAEEMASGVAALRGERDAAVTVAASMTIAEYLVPGWTVAM 120 Query 121 RAADMRRGGTVPEVILTAT--NSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELV 178 R P V+ + + NS A V+ G AD+GF+E P P+ L S VARD LV Sbjct 121 RH-------KFPNVVASVSLHNSSDVSAQVQAGQADIGFVEGPDVPSALASCEVARDHLV 173 Query 179 VVVPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLEL 238 VVVPPGH WA V A +LA+TPL+ RE SG R +L A+ D + PP+LEL Sbjct 174 VVVPPGHDWANGVPVPVA-DLARTPLIQRESGSGTRLTLENAVPDCV-------PPLLEL 225 Query 239 SSAAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAG 298 +S AV+AAV+AG PA +S LA+A DL GRL+AV++ L + R+L+A+W R G Sbjct 226 TSCTAVKAAVVAGNAPAVLSSLAVAADLTDGRLVAVNVDGLRMPRRLQAVWDPDRG-LRG 284 Query 299 AIRDLL 304 A RD L Sbjct 285 AARDFL 290 >gi|333028236|ref|ZP_08456300.1| putative LysR family transcriptional regulator [Streptomyces sp. Tu6071] gi|332748088|gb|EGJ78529.1| putative LysR family transcriptional regulator [Streptomyces sp. Tu6071] Length=341 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 136/305 (45%), Positives = 185/305 (61%), Gaps = 14/305 (4%) Query 3 LSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTRGS 62 L+ R+P L E+ LA+ GSLG AARELG+TQ A S R+ S+E Q+GV L R+ RGS Sbjct 43 LARRVPDLGLLEVLLAVDRLGSLGRAARELGITQPAASGRVRSLERQLGVGLVARSPRGS 102 Query 63 QLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSLRA 122 +LTP G++VA WA R+ E A+ DAG +LR R+RV AS TI E L+P W+++LRA Sbjct 103 RLTPTGLLVAGWARRVTEAAEAFDAGARALRGRRDSRLRVAASMTIGEYLLPGWLVALRA 162 Query 123 ADMRRGGTVPE--VILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVV 180 P+ V L A ++ + + DG ADLGF+E P G V+ARD L+V+ Sbjct 163 VR-------PDTAVSLRAGSTRMVVEGLLDGEADLGFVEGLGVPAGTDGAVIARDRLLVL 215 Query 181 VPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSS 240 V PGH W + + LA TPL+ RE SG R+ L AAL G + P+LELSS Sbjct 216 VRPGHPWTALTGGLDPALLATTPLILREEGSGTREVLDAALAPYDGPER----PLLELSS 271 Query 241 AAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAI 300 A+++A L+G GPA +S L + +++A G L+ V + + L R LRA+W G P+GA Sbjct 272 TTALKSAALSGVGPAVLSELVVGEEVAAGTLVPVPVRGVGLGRVLRAVWRRGER-PSGAA 330 Query 301 RDLLS 305 RDLLS Sbjct 331 RDLLS 335 >gi|318062290|ref|ZP_07981011.1| transcriptional regulator [Streptomyces sp. SA3_actG] gi|318080397|ref|ZP_07987729.1| transcriptional regulator [Streptomyces sp. SA3_actF] Length=341 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 136/305 (45%), Positives = 185/305 (61%), Gaps = 14/305 (4%) Query 3 LSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTRGS 62 L+ R+P L E+ LA+ GSLG AARELG+TQ A S R+ S+E Q+GV L R+ RGS Sbjct 43 LARRVPDLGLLEVLLAVDRLGSLGRAARELGITQPAASGRVRSLERQLGVGLVARSPRGS 102 Query 63 QLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSLRA 122 +LTP G++VA WA R+ E A+ DAG +LR R+RV AS TI E L+P W+++LRA Sbjct 103 RLTPTGLLVAGWARRVTEAAEAFDAGARALRGRRDSRLRVAASMTIGEYLLPGWLVALRA 162 Query 123 ADMRRGGTVPE--VILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVV 180 P+ V L A ++ + + DG ADLGF+E P G V+ARD L+V+ Sbjct 163 VR-------PDTAVSLRAGSTRMVVEGLLDGEADLGFVEGLGVPAGTDGAVIARDRLLVL 215 Query 181 VPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSS 240 V PGH W + + LA TPL+ RE SG R+ L AAL G + P+LELSS Sbjct 216 VRPGHPWTALTGGLDPALLATTPLILREEGSGTREVLDAALAPYDGPER----PLLELSS 271 Query 241 AAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAI 300 A+++A L+G GPA +S L + +++A G L+ V + + L R LRA+W G P+GA Sbjct 272 TTALKSAALSGVGPAVLSELVVGEEVAAGTLVPVPVRGVGLGRVLRAVWRRGER-PSGAA 330 Query 301 RDLLS 305 RDLLS Sbjct 331 RDLLS 335 >gi|111023194|ref|YP_706166.1| LysR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110822724|gb|ABG98008.1| transcriptional regulator, LysR family protein [Rhodococcus jostii RHA1] Length=314 Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 135/306 (45%), Positives = 181/306 (60%), Gaps = 18/306 (5%) Query 1 MPLSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTR 60 MPLS R+P L+ ++ L++ GS+G A RE GL+QQAVS R+ S E Q G+++ R Sbjct 1 MPLSPRVPELSALDVLLSVERLGSMGAAGREHGLSQQAVSARVRSAERQFGIKVFSRGAS 60 Query 61 GSQLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSL 120 G + T G ++ EWA+ +L A+E+ +G+ +LR E + + V AS TIAE L+P W ++ Sbjct 61 GVRPTSEGALILEWASHILATAEELASGVAALRGERQAGLTVAASMTIAEYLVPGWTVA- 119 Query 121 RAADMRRGGTVPEVILTA--TNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELV 178 MRR P V+ NS A V G ADLGF+E P P GL + RD LV Sbjct 120 ----MRR--KYPNVVTNVRLLNSSEVTARVLSGEADLGFVEGPDIPAGLQVREIGRDHLV 173 Query 179 VVVPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLEL 238 VVVPP H+W RRS +S ELA TP++ RE SG R +L A+ Q PP+LEL Sbjct 174 VVVPPEHEWVRRSP-ISVSELAATPMIQRESGSGTRTTLENAVP-------QCVPPLLEL 225 Query 239 SSAAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAG 298 +S AV+AAV+AG PA +S LA+A DL GRL +V + L L R+L A+W R G Sbjct 226 TSCTAVKAAVVAGNAPAVLSSLAVAADLTDGRLASVQVEGLTLPRRLSAVWDPVRG-VQG 284 Query 299 AIRDLL 304 A RD L Sbjct 285 AARDFL 290 >gi|226365699|ref|YP_002783482.1| LysR family transcriptional regulator [Rhodococcus opacus B4] gi|226244189|dbj|BAH54537.1| putative LysR family transcriptional regulator [Rhodococcus opacus B4] Length=314 Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 135/306 (45%), Positives = 180/306 (59%), Gaps = 18/306 (5%) Query 1 MPLSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTR 60 MPLS R+P L+ ++ L++ GS+G A RE GL+QQAVS R+ S E Q G+++ R Sbjct 1 MPLSPRVPELSALDVLLSVERLGSMGAAGREHGLSQQAVSARVRSAERQFGIKVFSRGAS 60 Query 61 GSQLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSL 120 G Q T G ++ EWA+ +L A+E+ +G+ +LR E + + V AS TIAE L+P W ++ Sbjct 61 GVQPTSEGALILEWASHILATAEELASGVAALRGERQAGLTVAASMTIAEYLVPGWTVA- 119 Query 121 RAADMRRGGTVPEVILTA--TNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELV 178 MRR P V+ NS A V G ADLGF+E P P GL + RD LV Sbjct 120 ----MRR--KYPNVVTNVRLLNSSEVTARVLSGEADLGFVEGPDIPAGLQVREIGRDHLV 173 Query 179 VVVPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLEL 238 VVVPP H+W RRS + ELA TP++ RE SG R +L A+ Q PP+LEL Sbjct 174 VVVPPEHEWVRRSP-IPVSELAATPMIQRESGSGTRTTLENAVP-------QCVPPLLEL 225 Query 239 SSAAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAG 298 +S AV+AAV+AG PA +S LA+A DL GRL +V + L L R+L A+W R G Sbjct 226 TSCTAVKAAVVAGNAPAVLSSLAVAADLTDGRLASVQVEGLTLPRRLSAVWDPVRG-VQG 284 Query 299 AIRDLL 304 A RD L Sbjct 285 AARDFL 290 >gi|254385025|ref|ZP_05000359.1| LysR-family transcriptional regulator [Streptomyces sp. Mg1] gi|194343904|gb|EDX24870.1| LysR-family transcriptional regulator [Streptomyces sp. Mg1] Length=279 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 135/278 (49%), Positives = 172/278 (62%), Gaps = 13/278 (4%) Query 1 MPLSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTR 60 +PL+ R+P L E+ LA+A GSL AAR LG+TQ A S R+ +ME ++GV L R+ R Sbjct 7 VPLAHRVPDLGALELLLAVARVGSLSAAARRLGITQPAASSRIRAMETRLGVALVDRSPR 66 Query 61 GSQLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSL 120 GS LT G +V +WA R++E A+ DAG +LR R+RV AS TIAE L+P W+++L Sbjct 67 GSTLTADGALVTDWARRVVEAAEAFDAGAQALRGRRDSRLRVAASMTIAEYLLPGWLIAL 126 Query 121 RAADMRRGGTVPE--VILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELV 178 R G P+ V L A NS V ADLGF+E P GL SVV+A+D LV Sbjct 127 R-------GQRPDTAVSLHAGNSAVVAQRVLAHEADLGFVEGLSVPEGLDSVVIAQDRLV 179 Query 179 VVVPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLEL 238 V V PGH WARRSR V A ELA TPL+ RE SG R L AAL + G A P+LEL Sbjct 180 VAVAPGHPWARRSRGVVAAELAATPLILRERGSGTRQVLDAALAGSGG----LAEPLLEL 235 Query 239 SSAAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDI 276 +S AV+AA L+GAGP +S LA+ +LA RL+ V + Sbjct 236 ASTTAVKAAALSGAGPCVLSELAVGVELAGRRLVEVPV 273 >gi|229489677|ref|ZP_04383540.1| LysR-family transcriptional regulator [Rhodococcus erythropolis SK121] gi|229323774|gb|EEN89532.1| LysR-family transcriptional regulator [Rhodococcus erythropolis SK121] Length=297 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 130/300 (44%), Positives = 183/300 (61%), Gaps = 18/300 (6%) Query 7 MPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTRGSQLTP 66 MP L+ ++ L++ GS+G A RE GL+QQAVS R+ S+E Q+G+++ R G + T Sbjct 1 MPELSALDVLLSVGRLGSMGAAGREHGLSQQAVSARVRSVERQLGIKVFDRAATGVRPTA 60 Query 67 AGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSLRAADMR 126 G ++ EWA+ +L A+E+ +G+ +LR E + V AS TIAE L+P W +++R Sbjct 61 EGGLILEWASHILVSAEEMASGVAALRGERDAAVTVAASMTIAEYLVPGWTVAMRH---- 116 Query 127 RGGTVPEVILTAT--NSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVVVPPG 184 P V+ + + NS A V+ G AD+GF+E P P+ L S VARD LVVVVPPG Sbjct 117 ---KFPNVVASVSLHNSSDVSAQVQAGQADIGFVEGPDVPSALASCEVARDHLVVVVPPG 173 Query 185 HKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSSAAAV 244 H WA V ELA+TPL+ RE SG R +L A+ D + PP+LEL+S AV Sbjct 174 HDWA-NGVPVPVEELARTPLIQRESGSGTRLTLENAVPDCV-------PPLLELTSCTAV 225 Query 245 RAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAIRDLL 304 +AAV+AG PA +S LA+A DL GRL+AV++ L + R+L+A+W R GA RD L Sbjct 226 KAAVVAGNAPAVLSSLAVAADLTDGRLVAVNVDGLRMPRRLQAVWDPDRG-LRGAARDFL 284 >gi|326329024|ref|ZP_08195353.1| transcriptional regulator, LysR family [Nocardioidaceae bacterium Broad-1] gi|325953106|gb|EGD45117.1| transcriptional regulator, LysR family [Nocardioidaceae bacterium Broad-1] Length=297 Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 130/299 (44%), Positives = 175/299 (59%), Gaps = 9/299 (3%) Query 7 MPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTRGSQLTP 66 +P L + +A GS+G A R G++QQ+ S RL +ME Q+G+ L R RGS LT Sbjct 4 LPDLPSLRLLADVARLGSIGAAGRGAGISQQSASERLRAMETQVGLVLVQRARRGSALTQ 63 Query 67 AGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSLRAADMR 126 AG ++ EW+ LLE ADEI+ L +LR+ + V AS T AE L+P W++ LR R Sbjct 64 AGKLLVEWSVDLLERADEIETALQTLRSGRSDELHVHASMTTAEYLLPRWLVRLR--QQR 121 Query 127 RGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVVVPPGHK 186 R V L A NSE + AVR G AD+GF+E P GL + V D+LV+V P + Sbjct 122 R----VAVSLRAANSEDVVTAVRQGEADMGFVEGPVDTAGLATAKVGVDDLVLVAAPDDR 177 Query 187 WARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSSAAAVRA 246 WARR +S RELA PL RE SG R + +AL +GE + P +E ++ AA+ A Sbjct 178 WARRRAGISPRELATRPLTCREHGSGTRAVVESAL-AAVGERLTD--PEVEFATNAAILA 234 Query 247 AVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAIRDLLS 305 AV AG PA +S A D+ G L+ V + L+L R+ RA+WVGG PPAG +RDLL+ Sbjct 235 AVRAGGSPAFVSSRATQADVDLGTLVRVPVAELDLSREFRAVWVGGGRPPAGPVRDLLA 293 >gi|134100310|ref|YP_001105971.1| LysR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291008790|ref|ZP_06566763.1| LysR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133912933|emb|CAM03046.1| LysR-family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length=299 Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 133/297 (45%), Positives = 182/297 (62%), Gaps = 14/297 (4%) Query 8 PGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTRGSQLTPA 67 P + + +A+ GS+G AA EL ++Q + S+RL+S+E +G+ L R+ +G LTPA Sbjct 4 PDPESLRLLVLVADLGSIGAAAVELRVSQPSASKRLSSLERGLGLELVERSRQGCTLTPA 63 Query 68 GIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSLRAADMRR 127 G++VA+WA ++L D + G+ +LR + R+RV AS T+AE L P W+ LR A Sbjct 64 GVIVADWARQVLAQVDGLMNGVRALRAQHEPRLRVSASMTVAEYLAPAWISRLRRA---- 119 Query 128 GGTVPE--VILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVVVPPGH 185 +PE + L TNS+ AVR G ADLGFIE P P G+ VARD +VVVVPP H Sbjct 120 ---LPETHLELDVTNSQAVAEAVRHGHADLGFIETPLAPEGVSIRHVARDRMVVVVPPEH 176 Query 186 KWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSSAAAVR 245 WAR R ++ ELA TPL+ RE SG R++L AL + +G D P+LEL S AVR Sbjct 177 PWARLRRPLTPAELAATPLIVREEGSGTRETLYRALAE-VGAD--PVAPLLELHSTTAVR 233 Query 246 AAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGG--RTPPAGAI 300 +V+AGAGPA +S LA+ DLA R+ V + L+LRR L A+W G T PA A+ Sbjct 234 NSVVAGAGPAVLSTLAVGTDLAEQRVTEVGVTGLDLRRPLHAVWRSGLRLTGPAAAL 290 >gi|311897217|dbj|BAJ29625.1| putative LysR family transcriptional regulator [Kitasatospora setae KM-6054] Length=323 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 146/304 (49%), Positives = 185/304 (61%), Gaps = 10/304 (3%) Query 1 MPLSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTR 60 M LS +P L E+ LA+A GS+G AA ELG++Q A S R+ ME QIGV L R+ R Sbjct 1 MALSPHVPELGALELLLAVARLGSVGRAAAELGVSQPAASARIKGMERQIGVALLERSPR 60 Query 61 GSQLTPAGIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSL 120 GS+ T AG +V EWA +++E A +DAG+ +LR R+RVVAS T+AE LMP W+L+L Sbjct 61 GSRPTEAGRLVVEWARQVVEAAQALDAGIDALRGRRDARLRVVASLTVAEYLMPGWLLAL 120 Query 121 RAADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVV 180 A GT V L NS A V G ADLGF+E P GL VVA D LVVV Sbjct 121 HGASP---GTA--VTLRTANSHDVAAQVLAGEADLGFVEGTSTPPGLSGAVVAADRLVVV 175 Query 181 VPPGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSS 240 V P H+WARR V+ ELA TPLV RE SG R+ L AL G A P LEL+S Sbjct 176 VSPEHRWARRRTPVTGAELAATPLVLREVGSGTREVLEEALAPYGG----PAAPRLELAS 231 Query 241 AAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAI 300 + A++AA + GA P +S LA+ ++LA RL+AV + + L+R LRA+W G+ PAG Sbjct 232 STALKAAAMTGADPVCLSELAVTEELATRRLVAVPLAGVELQRPLRAVWPAGQR-PAGPA 290 Query 301 RDLL 304 R LL Sbjct 291 RQLL 294 >gi|154508465|ref|ZP_02044107.1| hypothetical protein ACTODO_00965 [Actinomyces odontolyticus ATCC 17982] gi|153798099|gb|EDN80519.1| hypothetical protein ACTODO_00965 [Actinomyces odontolyticus ATCC 17982] Length=309 Score = 209 bits (531), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 129/300 (43%), Positives = 178/300 (60%), Gaps = 8/300 (2%) Query 8 PGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTRGSQLTPA 67 P L + +A+ S+ A+ +LG++QQA+S R+ ++E + +RL +R+ RGS+LTPA Sbjct 13 PDLEALRVLALVAKESSMSAASAQLGVSQQAISLRIRNLEKDLRMRLLVRSARGSRLTPA 72 Query 68 GIVVAEWAARLLEVADEIDAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSLRAADMRR 127 G +V W LL ADE + SLRT+ + +R+ AS TIAE L+P W+ R + Sbjct 73 GELVVGWGTTLLTAADEFSDAVNSLRTDRGKMMRIAASLTIAEHLLPDWIARWR---ISH 129 Query 128 GGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVVVPPGHKW 187 G P V +TA NS + A+R+G ADLG +E P P GL SV VA D + VVV GH+W Sbjct 130 GNDGPVVQVTAANSSTVVEAIREGTADLGLVETPVVPAGLRSVTVAYDTIEVVVQHGHRW 189 Query 188 ARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSSAAAVRAA 247 A ++R VS RELA T LV RE SG R +L AL + G + A P L++ VR+A Sbjct 190 A-KTRRVSVRELAGTGLVLRETGSGTRQALENALTEA-GFPL-AAEPAAVLTTTLGVRSA 246 Query 248 VLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGRTPPAGAIRDLLSHI 307 ++AG P A+S LA+++D GRL+ V I L + R L AIW G PP IRD L I Sbjct 247 IMAGIAPGALSSLAVSEDARAGRLVRVRINNLQITRPLTAIWAGTTPPP--HIRDFLDVI 304 >gi|184201608|ref|YP_001855815.1| LysR family transcriptional regulator [Kocuria rhizophila DC2201] gi|183581838|dbj|BAG30309.1| putative LysR family transcriptional regulator [Kocuria rhizophila DC2201] Length=300 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 133/291 (46%), Positives = 177/291 (61%), Gaps = 15/291 (5%) Query 5 SRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRRLASMEAQIGVRLAIRTTRGSQL 64 S+ P + E+ +A+A+ GSL AAR +G Q SR +A +E +GV L R+TRGS L Sbjct 2 SQWPDVAALELLVAVADHGSLAAAARAVGTAQPNASRSMARLERSVGVPLLHRSTRGSTL 61 Query 65 TPAGIVVAEWAARLLEVADEI--DAGLGSLRTEGRQRIRVVASQTIAEQLMPHWMLSLRA 122 TPAG++V EWA ++ + ++ A L + T +RV ASQT+AE L+P W+ Sbjct 62 TPAGLLVTEWARDVVGASRKLVDGAALLAQDTSRSSSLRVSASQTVAEHLLPRWL----- 116 Query 123 ADMRRGGTVPEVILTATNSEHAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVVVP 182 A+MR V +T NS V G AD+GFIE P PP+G+ VVARDELV+VVP Sbjct 117 AEMRSAHPESRVRVTVHNSHEVARDVLRGAADVGFIEAPAPPSGVHHTVVARDELVLVVP 176 Query 183 PGHKWARRSRVVSARELAQTPLVTREPNSGIRDSLTAALRDTLGEDMQQAPPVLELSSAA 242 PGH WA R V+ ELA TPL+TRE SG R AL + LG + +LE+ S A Sbjct 177 PGHPWASRQDPVTTAELAATPLITREAGSGTR----MALDEALGAPVSS---LLEMPSNA 229 Query 243 AVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWVGGR 293 AVR +V AG+GPA +SRLA+ D +A G L+ V L+LRR+LRA+W G R Sbjct 230 AVRVSVQAGSGPAVLSRLAVDDAVAAGTLVQVPT-VLDLRRELRAVWHGPR 279 Lambda K H 0.320 0.133 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 536811074178 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40