BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2283

Length=64
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609420|ref|NP_216799.1|  hypothetical protein Rv2283 [Mycoba...   130    5e-29
gi|7648573|gb|AAF65589.1|AF139916_10  hypothetical protein [Brevi...  36.2    1.9  


>gi|15609420|ref|NP_216799.1| hypothetical protein Rv2283 [Mycobacterium tuberculosis H37Rv]
 gi|31793460|ref|NP_855953.1| hypothetical protein Mb2304 [Mycobacterium bovis AF2122/97]
 gi|121638163|ref|YP_978387.1| hypothetical protein BCG_2298 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 30 more sequence titles
 Length=64

 Score =  130 bits (328),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 64/64 (100%), Positives = 64/64 (100%), Gaps = 0/64 (0%)

Query  1   MLEKCPHASVDCGASKIGITDNDPATATNRRLASTIRKPPIEHAAGPLGSTSRAGHRSYG  60
           MLEKCPHASVDCGASKIGITDNDPATATNRRLASTIRKPPIEHAAGPLGSTSRAGHRSYG
Sbjct  1   MLEKCPHASVDCGASKIGITDNDPATATNRRLASTIRKPPIEHAAGPLGSTSRAGHRSYG  60

Query  61  GVAS  64
           GVAS
Sbjct  61  GVAS  64


>gi|7648573|gb|AAF65589.1|AF139916_10 hypothetical protein [Brevibacterium linens]
Length=409

 Score = 36.2 bits (82),  Expect = 1.9, Method: Compositional matrix adjust.
 Identities = 19/51 (38%), Positives = 29/51 (57%), Gaps = 1/51 (1%)

Query  3    EKCPHASVDCGASKIGITDNDPATATNRRLASTIRKPPIEHAAGPLGSTSR  53
            E   + SV+  A  +G+TD+ P  A  +RL    R+PP++ AA  +G T R
Sbjct  118  EAALNYSVEVTAEIVGLTDS-PIDAMAKRLVGFFRQPPVDLAAPAMGRTRR  167



Lambda     K      H
   0.313    0.128    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 130804070320


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40