BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2288
Length=125
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609425|ref|NP_216804.1| hypothetical protein Rv2288 [Mycoba... 251 3e-65
gi|340627292|ref|YP_004745744.1| hypothetical protein MCAN_23101... 248 2e-64
gi|313239781|emb|CBY14661.1| unnamed protein product [Oikopleura... 35.0 4.2
>gi|15609425|ref|NP_216804.1| hypothetical protein Rv2288 [Mycobacterium tuberculosis H37Rv]
gi|15841779|ref|NP_336816.1| hypothetical protein MT2345.1 [Mycobacterium tuberculosis CDC1551]
gi|31793466|ref|NP_855959.1| hypothetical protein Mb2310 [Mycobacterium bovis AF2122/97]
52 more sequence titles
Length=125
Score = 251 bits (641), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 124/125 (99%), Positives = 125/125 (100%), Gaps = 0/125 (0%)
Query 1 VSRRRPLIEPATVQVLAIAFTDSFSVSLHWPQREQGCRTAILAPMRRWCDGDVDGRKLLP 60
+SRRRPLIEPATVQVLAIAFTDSFSVSLHWPQREQGCRTAILAPMRRWCDGDVDGRKLLP
Sbjct 1 MSRRRPLIEPATVQVLAIAFTDSFSVSLHWPQREQGCRTAILAPMRRWCDGDVDGRKLLP 60
Query 61 PARRTGTQQRRIRPAAPRVYTTGDILRDRKGIAPWQEQREPGWAPFGWLHEPSGARCPKA 120
PARRTGTQQRRIRPAAPRVYTTGDILRDRKGIAPWQEQREPGWAPFGWLHEPSGARCPKA
Sbjct 61 PARRTGTQQRRIRPAAPRVYTTGDILRDRKGIAPWQEQREPGWAPFGWLHEPSGARCPKA 120
Query 121 DGQSV 125
DGQSV
Sbjct 121 DGQSV 125
>gi|340627292|ref|YP_004745744.1| hypothetical protein MCAN_23101 [Mycobacterium canettii CIPT
140010059]
gi|340005482|emb|CCC44642.1| hypothetical protein MCAN_23101 [Mycobacterium canettii CIPT
140010059]
Length=125
Score = 248 bits (633), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 123/125 (99%), Positives = 124/125 (99%), Gaps = 0/125 (0%)
Query 1 VSRRRPLIEPATVQVLAIAFTDSFSVSLHWPQREQGCRTAILAPMRRWCDGDVDGRKLLP 60
+SRRRPLIEPATVQVLAIAFTDSFSVSLHWPQREQGCRTAILAPMRRWCDGDVDGRKLLP
Sbjct 1 MSRRRPLIEPATVQVLAIAFTDSFSVSLHWPQREQGCRTAILAPMRRWCDGDVDGRKLLP 60
Query 61 PARRTGTQQRRIRPAAPRVYTTGDILRDRKGIAPWQEQREPGWAPFGWLHEPSGARCPKA 120
PARRTGTQQRRIRPAAPRVYTTGDILRDRKGIAPWQEQREPGWAPFGWLHE SGARCPKA
Sbjct 61 PARRTGTQQRRIRPAAPRVYTTGDILRDRKGIAPWQEQREPGWAPFGWLHELSGARCPKA 120
Query 121 DGQSV 125
DGQSV
Sbjct 121 DGQSV 125
>gi|313239781|emb|CBY14661.1| unnamed protein product [Oikopleura dioica]
Length=1286
Score = 35.0 bits (79), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/96 (31%), Positives = 44/96 (46%), Gaps = 8/96 (8%)
Query 13 VQVLAIAFTDSFSVSLHWPQREQGCRTAILAPMRRWCDGDVD---GRKLLPPARRTGTQQ 69
VQ+L F + ++S H R+ GC A + P R CD + + R L P T T++
Sbjct 354 VQILPTGFREVMTLSTHLQGRQTGCIHASVLPQRGGCDPEHEIMLTRSLFPDLPETTTKE 413
Query 70 ----RRIRPAAPRVYTTGDILRDRKGI-APWQEQRE 100
R + A + T R+RK + A QE R+
Sbjct 414 YNLNREVLLAVEKSKTVRMATRNRKVVQAQEQELRD 449
Lambda K H
0.322 0.137 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 130354689300
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40