BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2304c

Length=69
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609441|ref|NP_216820.1|  hypothetical protein Rv2304c [Mycob...   140    4e-32
gi|294993109|ref|ZP_06798800.1|  hypothetical protein Mtub2_01016...  80.1    9e-14


>gi|15609441|ref|NP_216820.1| hypothetical protein Rv2304c [Mycobacterium tuberculosis H37Rv]
 gi|15841795|ref|NP_336832.1| hypothetical protein MT2361 [Mycobacterium tuberculosis CDC1551]
 gi|31793482|ref|NP_855975.1| hypothetical protein Mb2326c [Mycobacterium bovis AF2122/97]
 38 more sequence titles
 Length=69

 Score =  140 bits (354),  Expect = 4e-32, Method: Compositional matrix adjust.
 Identities = 69/69 (100%), Positives = 69/69 (100%), Gaps = 0/69 (0%)

Query  1   MSHDIATEEADDGALDRCVLCDLTGKRVDVKEATCTGRPATTFEQAFAVERDAGFDDFLH  60
           MSHDIATEEADDGALDRCVLCDLTGKRVDVKEATCTGRPATTFEQAFAVERDAGFDDFLH
Sbjct  1   MSHDIATEEADDGALDRCVLCDLTGKRVDVKEATCTGRPATTFEQAFAVERDAGFDDFLH  60

Query  61  GPVGPRSTP  69
           GPVGPRSTP
Sbjct  61  GPVGPRSTP  69


>gi|294993109|ref|ZP_06798800.1| hypothetical protein Mtub2_01016 [Mycobacterium tuberculosis 
210]
Length=38

 Score = 80.1 bits (196),  Expect = 9e-14, Method: Compositional matrix adjust.
 Identities = 38/38 (100%), Positives = 38/38 (100%), Gaps = 0/38 (0%)

Query  32  EATCTGRPATTFEQAFAVERDAGFDDFLHGPVGPRSTP  69
           EATCTGRPATTFEQAFAVERDAGFDDFLHGPVGPRSTP
Sbjct  1   EATCTGRPATTFEQAFAVERDAGFDDFLHGPVGPRSTP  38



Lambda     K      H
   0.319    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128671965800


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40