BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2306A Length=197 Score E Sequences producing significant alignments: (Bits) Value gi|57116962|ref|YP_177663.1| hypothetical protein Rv2306A [Mycob... 383 6e-105 gi|31793484|ref|NP_855977.1| hypothetical protein Mb2328 [Mycoba... 383 7e-105 gi|289443815|ref|ZP_06433559.1| LOW QUALITY PROTEIN: possible co... 218 3e-55 gi|183983522|ref|YP_001851813.1| hypothetical protein MMAR_3541 ... 131 5e-29 gi|118471337|ref|YP_887160.1| hypothetical protein MSMEG_2840 [M... 122 3e-26 gi|108802188|ref|YP_642385.1| hypothetical protein Mmcs_5227 [My... 121 7e-26 gi|342858881|ref|ZP_08715535.1| hypothetical protein MCOL_08393 ... 119 2e-25 gi|340625644|ref|YP_004744096.1| hypothetical protein MCAN_06241... 116 2e-24 gi|15840026|ref|NP_335063.1| hypothetical protein MT0653 [Mycoba... 115 3e-24 gi|15607765|ref|NP_215139.1| transmembrane protein [Mycobacteriu... 115 4e-24 gi|307083125|ref|ZP_07492238.1| hypothetical protein TMLG_03375 ... 114 6e-24 gi|41410188|ref|NP_963024.1| hypothetical protein MAP4090c [Myco... 114 7e-24 gi|240169395|ref|ZP_04748054.1| hypothetical protein MkanA1_0878... 114 7e-24 gi|298524114|ref|ZP_07011523.1| conserved transmembrane protein ... 113 1e-23 gi|336460590|gb|EGO39483.1| hypothetical protein MAPs_39460 [Myc... 112 3e-23 gi|118466458|ref|YP_883676.1| hypothetical protein MAV_4545 [Myc... 112 3e-23 gi|254776978|ref|ZP_05218494.1| hypothetical protein MaviaA2_202... 111 7e-23 gi|120402193|ref|YP_952022.1| hypothetical protein Mvan_1181 [My... 110 8e-23 gi|323720980|gb|EGB30045.1| membrane protein [Mycobacterium tube... 99.4 2e-19 gi|254823501|ref|ZP_05228502.1| hypothetical protein MintA_26463... 87.0 1e-15 gi|315446078|ref|YP_004078957.1| hypothetical protein Mspyr1_457... 85.1 5e-15 gi|145225727|ref|YP_001136405.1| hypothetical protein Mflv_5151 ... 85.1 6e-15 gi|296168387|ref|ZP_06850292.1| conserved hypothetical protein [... 84.0 1e-14 gi|284042519|ref|YP_003392859.1| hypothetical protein Cwoe_1052 ... 51.6 7e-05 gi|312882173|ref|ZP_07741921.1| AcrB/AcrD/AcrF family protein [V... 48.9 4e-04 gi|345125339|gb|EGW55209.1| rhodanese domain protein [endosymbio... 48.1 6e-04 gi|95931277|ref|ZP_01313995.1| protein of unknown function DUF22... 46.2 0.003 gi|300864069|ref|ZP_07108969.1| conserved membrane hypothetical ... 42.4 0.042 gi|117924412|ref|YP_865029.1| rhodanese [Magnetococcus sp. MC-1]... 41.6 0.057 gi|334119426|ref|ZP_08493512.1| SNARE associated protein [Microc... 41.2 0.086 gi|114319913|ref|YP_741596.1| hypothetical protein Mlg_0752 [Alk... 40.8 0.11 gi|17232678|ref|NP_489226.1| hypothetical protein alr5186 [Nosto... 40.4 0.14 gi|302036507|ref|YP_003796829.1| hypothetical protein NIDE1145 [... 39.7 0.23 gi|75908987|ref|YP_323283.1| hypothetical protein Ava_2775 [Anab... 39.7 0.26 gi|313896321|ref|ZP_07829874.1| acriflavine resistance protein B... 38.1 0.65 gi|148263625|ref|YP_001230331.1| hypothetical protein Gura_1562 ... 38.1 0.74 gi|186683627|ref|YP_001866823.1| hypothetical protein Npun_R3472... 37.7 0.80 gi|334127847|ref|ZP_08501749.1| RND superfamily resistance-nodul... 37.7 0.93 gi|90581492|ref|ZP_01237286.1| AcrB/AcrD/AcrF family protein [Vi... 37.7 0.95 gi|89073891|ref|ZP_01160398.1| AcrB/AcrD/AcrF family protein [Ph... 37.7 0.95 gi|116749667|ref|YP_846354.1| hypothetical protein Sfum_2237 [Sy... 37.7 0.96 gi|260886616|ref|ZP_05897879.1| multidrug efflux RND transporter... 37.7 0.97 gi|338849388|gb|AEJ27599.1| RND efflux system inner membrane tra... 37.7 0.98 gi|292670164|ref|ZP_06603590.1| RND superfamily drug:proton (H+)... 37.4 1.3 gi|238926903|ref|ZP_04658663.1| possible acridine efflux pump [S... 37.4 1.3 gi|304436757|ref|ZP_07396725.1| RND superfamily drug:proton (H+)... 37.0 1.5 gi|338811703|ref|ZP_08623908.1| transporter, hydrophobe/amphiphi... 36.6 1.9 gi|32476849|ref|NP_869843.1| hypothetical protein RB11207 [Rhodo... 36.6 2.0 gi|225025203|ref|ZP_03714395.1| hypothetical protein EIKCOROL_02... 36.6 2.1 gi|340029272|ref|ZP_08665335.1| hydrophobe/amphiphile efflux-1 (... 36.6 2.2 >gi|57116962|ref|YP_177663.1| hypothetical protein Rv2306A [Mycobacterium tuberculosis H37Rv] gi|167969841|ref|ZP_02552118.1| possible conserved membrane protein [Mycobacterium tuberculosis H37Ra] gi|253798628|ref|YP_003031629.1| hypothetical protein TBMG_04030 [Mycobacterium tuberculosis KZN 1435] 15 more sequence titles Length=197 Score = 383 bits (984), Expect = 6e-105, Method: Compositional matrix adjust. Identities = 197/197 (100%), Positives = 197/197 (100%), Gaps = 0/197 (0%) Query 1 MTDNECPADSRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAIVVATGPIAPLAYV 60 MTDNECPADSRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAIVVATGPIAPLAYV Sbjct 1 MTDNECPADSRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAIVVATGPIAPLAYV 60 Query 61 VVSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPAFSAGAQAGMTPRRCWVSIAPIASM 120 VVSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPAFSAGAQAGMTPRRCWVSIAPIASM Sbjct 61 VVSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPAFSAGAQAGMTPRRCWVSIAPIASM 120 Query 121 HRSNGADCGRWSVSASSPASRMRWPRTPSGRSEFRCGRWSLGRSSGRRHGCSSTPRWARR 180 HRSNGADCGRWSVSASSPASRMRWPRTPSGRSEFRCGRWSLGRSSGRRHGCSSTPRWARR Sbjct 121 HRSNGADCGRWSVSASSPASRMRWPRTPSGRSEFRCGRWSLGRSSGRRHGCSSTPRWARR 180 Query 181 SPTCRRRWFTRRSRCGA 197 SPTCRRRWFTRRSRCGA Sbjct 181 SPTCRRRWFTRRSRCGA 197 >gi|31793484|ref|NP_855977.1| hypothetical protein Mb2328 [Mycobacterium bovis AF2122/97] gi|121638187|ref|YP_978411.1| hypothetical protein BCG_2322 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990681|ref|YP_002645368.1| hypothetical protein JTY_2316 [Mycobacterium bovis BCG str. Tokyo 172] 12 more sequence titles Length=197 Score = 383 bits (984), Expect = 7e-105, Method: Compositional matrix adjust. Identities = 196/197 (99%), Positives = 197/197 (100%), Gaps = 0/197 (0%) Query 1 MTDNECPADSRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAIVVATGPIAPLAYV 60 MTDNECPADSRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSA+VVATGPIAPLAYV Sbjct 1 MTDNECPADSRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAVVVATGPIAPLAYV 60 Query 61 VVSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPAFSAGAQAGMTPRRCWVSIAPIASM 120 VVSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPAFSAGAQAGMTPRRCWVSIAPIASM Sbjct 61 VVSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPAFSAGAQAGMTPRRCWVSIAPIASM 120 Query 121 HRSNGADCGRWSVSASSPASRMRWPRTPSGRSEFRCGRWSLGRSSGRRHGCSSTPRWARR 180 HRSNGADCGRWSVSASSPASRMRWPRTPSGRSEFRCGRWSLGRSSGRRHGCSSTPRWARR Sbjct 121 HRSNGADCGRWSVSASSPASRMRWPRTPSGRSEFRCGRWSLGRSSGRRHGCSSTPRWARR 180 Query 181 SPTCRRRWFTRRSRCGA 197 SPTCRRRWFTRRSRCGA Sbjct 181 SPTCRRRWFTRRSRCGA 197 >gi|289443815|ref|ZP_06433559.1| LOW QUALITY PROTEIN: possible conserved membrane protein [Mycobacterium tuberculosis T46] gi|289416734|gb|EFD13974.1| LOW QUALITY PROTEIN: possible conserved membrane protein [Mycobacterium tuberculosis T46] Length=113 Score = 218 bits (556), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 112/113 (99%), Positives = 113/113 (100%), Gaps = 0/113 (0%) Query 1 MTDNECPADSRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAIVVATGPIAPLAYV 60 MTDNECPADSRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSA+VVATGPIAPLAYV Sbjct 1 MTDNECPADSRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAVVVATGPIAPLAYV 60 Query 61 VVSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPAFSAGAQAGMTPRRCWVS 113 VVSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPAFSAGAQAGMTPRRCWVS Sbjct 61 VVSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPAFSAGAQAGMTPRRCWVS 113 >gi|183983522|ref|YP_001851813.1| hypothetical protein MMAR_3541 [Mycobacterium marinum M] gi|183176848|gb|ACC41958.1| conserved membrane protein [Mycobacterium marinum M] Length=239 Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 71/95 (75%), Positives = 81/95 (86%), Gaps = 1/95 (1%) Query 2 TDNECPADSRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAIVVATGPIAPLAYVV 61 TD P+ SR RH++RLALFAG LLG+FYLVAVARVI + G+RSAI ATGP+APLAYVV Sbjct 6 TDPAPPSASRGRHLVRLALFAGFLLGMFYLVAVARVIDIAGIRSAIT-ATGPLAPLAYVV 64 Query 62 VSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPA 96 +S LGA+FVPGPILAAGSGVLFGP+L TFVTL A Sbjct 65 MSTVLGAVFVPGPILAAGSGVLFGPILGTFVTLGA 99 >gi|118471337|ref|YP_887160.1| hypothetical protein MSMEG_2840 [Mycobacterium smegmatis str. MC2 155] gi|118172624|gb|ABK73520.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=232 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 68/97 (71%), Positives = 77/97 (80%), Gaps = 2/97 (2%) Query 1 MTD-NECPADSRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAIVVATGPIAPLAY 59 MTD ++ PA R RH++RLALFA LLGLFYLVAVARV+ + +R A V ATGPIAPL Y Sbjct 1 MTDTDDPPATGRTRHIIRLALFAAFLLGLFYLVAVARVVEIGDIRGA-VSATGPIAPLVY 59 Query 60 VVVSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPA 96 VVVSA LGALFVPGP+LA SG LFGP+L TFVTL A Sbjct 60 VVVSACLGALFVPGPLLAGTSGFLFGPVLGTFVTLGA 96 >gi|108802188|ref|YP_642385.1| hypothetical protein Mmcs_5227 [Mycobacterium sp. MCS] gi|119871341|ref|YP_941293.1| hypothetical protein Mkms_5315 [Mycobacterium sp. KMS] gi|126438170|ref|YP_001073861.1| hypothetical protein Mjls_5607 [Mycobacterium sp. JLS] gi|108772607|gb|ABG11329.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119697430|gb|ABL94503.1| conserved hypothetical protein [Mycobacterium sp. KMS] gi|126237970|gb|ABO01371.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=220 Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 65/87 (75%), Positives = 73/87 (84%), Gaps = 1/87 (1%) Query 10 SRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAIVVATGPIAPLAYVVVSAALGAL 69 SRRRH+ RLA+FA ++ GLFYLVAV RVI VD VR A V ATGP+APL YVVVSA LGAL Sbjct 3 SRRRHIARLAVFAALVFGLFYLVAVERVIEVDAVRDA-VAATGPVAPLTYVVVSATLGAL 61 Query 70 FVPGPILAAGSGVLFGPLLDTFVTLPA 96 FVPGP+LA GSG+LFGP+L TFVTL A Sbjct 62 FVPGPLLAGGSGLLFGPVLGTFVTLGA 88 >gi|342858881|ref|ZP_08715535.1| hypothetical protein MCOL_08393 [Mycobacterium colombiense CECT 3035] gi|342133122|gb|EGT86325.1| hypothetical protein MCOL_08393 [Mycobacterium colombiense CECT 3035] Length=240 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 67/97 (70%), Positives = 76/97 (79%), Gaps = 2/97 (2%) Query 1 MTDNECP-ADSRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAIVVATGPIAPLAY 59 M DN P SRR H++RLA+FA L +FYLVAVARVI++D +R AIV ATGP APL Y Sbjct 1 MDDNHAPPTASRRAHIVRLAVFAAFLGAVFYLVAVARVINIDEIR-AIVSATGPAAPLTY 59 Query 60 VVVSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPA 96 VVVSA +GALFVPG ILAAGSG+LFGPLL FVTL A Sbjct 60 VVVSAVVGALFVPGSILAAGSGLLFGPLLGVFVTLGA 96 >gi|340625644|ref|YP_004744096.1| hypothetical protein MCAN_06241 [Mycobacterium canettii CIPT 140010059] gi|340003834|emb|CCC42964.1| putative conserved transmembrane protein [Mycobacterium canettii CIPT 140010059] Length=246 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 65/95 (69%), Positives = 73/95 (77%), Gaps = 1/95 (1%) Query 2 TDNECPADSRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAIVVATGPIAPLAYVV 61 T N+ SRRRH++RL +FAG L+G+FYLVA VI V VR A V ATGP APLAYVV Sbjct 3 THNDSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGA-VSATGPAAPLAYVV 61 Query 62 VSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPA 96 VSA LGALFVPGPILAA SG+LFGPL+ FVTL A Sbjct 62 VSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGA 96 >gi|15840026|ref|NP_335063.1| hypothetical protein MT0653 [Mycobacterium tuberculosis CDC1551] gi|254230959|ref|ZP_04924286.1| hypothetical protein TBCG_00619 [Mycobacterium tuberculosis C] gi|13880170|gb|AAK44877.1| hypothetical protein MT0653 [Mycobacterium tuberculosis CDC1551] gi|124600018|gb|EAY59028.1| hypothetical protein TBCG_00619 [Mycobacterium tuberculosis C] Length=278 Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 64/95 (68%), Positives = 72/95 (76%), Gaps = 1/95 (1%) Query 2 TDNECPADSRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAIVVATGPIAPLAYVV 61 T N+ SRRRH++RL +FAG L+G+FYLVA VI V VR A V ATGP APL YVV Sbjct 35 THNDSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGA-VSATGPAAPLTYVV 93 Query 62 VSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPA 96 VSA LGALFVPGPILAA SG+LFGPL+ FVTL A Sbjct 94 VSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGA 128 >gi|15607765|ref|NP_215139.1| transmembrane protein [Mycobacterium tuberculosis H37Rv] gi|31791807|ref|NP_854300.1| transmembrane protein [Mycobacterium bovis AF2122/97] gi|121636544|ref|YP_976767.1| putative transmembrane protein [Mycobacterium bovis BCG str. Pasteur 1173P2] 67 more sequence titles Length=246 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 64/95 (68%), Positives = 72/95 (76%), Gaps = 1/95 (1%) Query 2 TDNECPADSRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAIVVATGPIAPLAYVV 61 T N+ SRRRH++RL +FAG L+G+FYLVA VI V VR A V ATGP APL YVV Sbjct 3 THNDSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGA-VSATGPAAPLTYVV 61 Query 62 VSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPA 96 VSA LGALFVPGPILAA SG+LFGPL+ FVTL A Sbjct 62 VSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGA 96 >gi|307083125|ref|ZP_07492238.1| hypothetical protein TMLG_03375 [Mycobacterium tuberculosis SUMu012] gi|308367161|gb|EFP56012.1| hypothetical protein TMLG_03375 [Mycobacterium tuberculosis SUMu012] Length=214 Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 64/95 (68%), Positives = 72/95 (76%), Gaps = 1/95 (1%) Query 2 TDNECPADSRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAIVVATGPIAPLAYVV 61 T N+ SRRRH++RL +FAG L+G+FYLVA VI V VR A V ATGP APL YVV Sbjct 3 THNDSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGA-VSATGPAAPLTYVV 61 Query 62 VSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPA 96 VSA LGALFVPGPILAA SG+LFGPL+ FVTL A Sbjct 62 VSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGA 96 >gi|41410188|ref|NP_963024.1| hypothetical protein MAP4090c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41399022|gb|AAS06640.1| hypothetical protein MAP_4090c [Mycobacterium avium subsp. paratuberculosis K-10] Length=233 Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 67/98 (69%), Positives = 73/98 (75%), Gaps = 3/98 (3%) Query 1 MTDNECPAD--SRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAIVVATGPIAPLA 58 M D E P SRR H+LRLA+FAG L +FYLVAVARVI V +R A+V ATGP APL Sbjct 1 MDDQEAPDAPASRRAHILRLAVFAGFLAVVFYLVAVARVIDVGAIR-AVVSATGPAAPLT 59 Query 59 YVVVSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPA 96 YVV SA GALFVPG ILAAGSG+LFGPLL FVTL A Sbjct 60 YVVASALAGALFVPGSILAAGSGLLFGPLLGVFVTLGA 97 >gi|240169395|ref|ZP_04748054.1| hypothetical protein MkanA1_08783 [Mycobacterium kansasii ATCC 12478] Length=235 Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 65/97 (68%), Positives = 75/97 (78%), Gaps = 2/97 (2%) Query 1 MTDNE-CPADSRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAIVVATGPIAPLAY 59 M DN P SRR H++RL +FAG LLGL+YLVAVARV+ V+ +R A V ATGP APL Y Sbjct 1 MVDNPGSPLTSRRHHIVRLVVFAGFLLGLWYLVAVARVVDVEVMRRA-VSATGPAAPLTY 59 Query 60 VVVSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPA 96 VV SA LGALFVPGP+LAAGSG+LFGP+ FVTL A Sbjct 60 VVASAVLGALFVPGPVLAAGSGLLFGPVEGIFVTLGA 96 >gi|298524114|ref|ZP_07011523.1| conserved transmembrane protein [Mycobacterium tuberculosis 94_M4241A] gi|298493908|gb|EFI29202.1| conserved transmembrane protein [Mycobacterium tuberculosis 94_M4241A] Length=246 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 63/95 (67%), Positives = 71/95 (75%), Gaps = 1/95 (1%) Query 2 TDNECPADSRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAIVVATGPIAPLAYVV 61 T N+ SRRRH++RL +FAG L+G+FYLVA VI V VR A V ATGP PL YVV Sbjct 3 THNDSAPTSRRRHIVRLVVFAGFLVGMFYLVAATDVIDVAAVRGA-VSATGPAVPLTYVV 61 Query 62 VSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPA 96 VSA LGALFVPGPILAA SG+LFGPL+ FVTL A Sbjct 62 VSAVLGALFVPGPILAASSGLLFGPLVGVFVTLGA 96 >gi|336460590|gb|EGO39483.1| hypothetical protein MAPs_39460 [Mycobacterium avium subsp. paratuberculosis S397] Length=233 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 66/98 (68%), Positives = 72/98 (74%), Gaps = 3/98 (3%) Query 1 MTDNECPAD--SRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAIVVATGPIAPLA 58 M D E P SRR H+LRLA+FAG L +FYLVAVARVI V +R A+V ATGP APL Sbjct 1 MDDQEAPDAPASRRAHILRLAVFAGFLAVVFYLVAVARVIDVGAIR-AVVSATGPAAPLT 59 Query 59 YVVVSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPA 96 Y V SA GALFVPG ILAAGSG+LFGPLL FVTL A Sbjct 60 YAVASALAGALFVPGSILAAGSGLLFGPLLGVFVTLGA 97 >gi|118466458|ref|YP_883676.1| hypothetical protein MAV_4545 [Mycobacterium avium 104] gi|118167745|gb|ABK68642.1| conserved hypothetical protein [Mycobacterium avium 104] Length=233 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 66/98 (68%), Positives = 73/98 (75%), Gaps = 3/98 (3%) Query 1 MTDNECPAD--SRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAIVVATGPIAPLA 58 M + E P SRR H+LRLA+FAG L +FYLVAVARVI V +R A+V ATGP APL Sbjct 1 MDNQEAPDAPASRRAHILRLAVFAGFLAVVFYLVAVARVIDVGEIR-AVVSATGPAAPLT 59 Query 59 YVVVSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPA 96 YVV SA GALFVPG ILAAGSG+LFGPLL FVTL A Sbjct 60 YVVASALAGALFVPGSILAAGSGLLFGPLLGVFVTLGA 97 >gi|254776978|ref|ZP_05218494.1| hypothetical protein MaviaA2_20236 [Mycobacterium avium subsp. avium ATCC 25291] Length=233 Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 65/97 (68%), Positives = 74/97 (77%), Gaps = 4/97 (4%) Query 3 DNECPAD---SRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAIVVATGPIAPLAY 59 D++ +D SRR H+LRLA+FAG L +FYLVAVARVI V +R A+V ATGP APL Y Sbjct 2 DDQDASDAPASRRAHILRLAVFAGFLAVVFYLVAVARVIDVGEIR-AVVSATGPAAPLTY 60 Query 60 VVVSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPA 96 VV SA GALFVPG ILAAGSG+LFGPLL FVTL A Sbjct 61 VVASALAGALFVPGSILAAGSGLLFGPLLGVFVTLGA 97 >gi|120402193|ref|YP_952022.1| hypothetical protein Mvan_1181 [Mycobacterium vanbaalenii PYR-1] gi|119955011|gb|ABM12016.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=229 Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 62/97 (64%), Positives = 70/97 (73%), Gaps = 2/97 (2%) Query 1 MTDNE-CPADSRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAIVVATGPIAPLAY 59 M D E P SRRRH+ RLALF +L L+YL AV RVI V VR ++ +TGP APL Y Sbjct 3 MEDTEGTPETSRRRHITRLALFGAVLAVLYYLTAVERVIDVAQVRG-LIESTGPAAPLTY 61 Query 60 VVVSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPA 96 V VSA LGAL VPGP+LAAGSG LFGPL+ TFVTL A Sbjct 62 VAVSAVLGALLVPGPLLAAGSGFLFGPLVGTFVTLGA 98 >gi|323720980|gb|EGB30045.1| membrane protein [Mycobacterium tuberculosis CDC1551A] gi|339293662|gb|AEJ45773.1| hypothetical protein CCDC5079_0583 [Mycobacterium tuberculosis CCDC5079] gi|339297303|gb|AEJ49413.1| hypothetical protein CCDC5180_0576 [Mycobacterium tuberculosis CCDC5180] Length=230 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 57/81 (71%), Positives = 63/81 (78%), Gaps = 1/81 (1%) Query 16 LRLALFAGILLGLFYLVAVARVIHVDGVRSAIVVATGPIAPLAYVVVSAALGALFVPGPI 75 +RL +FAG L+G+FYLVA VI V VR A V ATGP APL YVVVSA LGALFVPGPI Sbjct 1 MRLVVFAGFLVGMFYLVAATDVIDVAAVRGA-VSATGPAAPLTYVVVSAVLGALFVPGPI 59 Query 76 LAAGSGVLFGPLLDTFVTLPA 96 LAA SG+LFGPL+ FVTL A Sbjct 60 LAASSGLLFGPLVGVFVTLGA 80 >gi|254823501|ref|ZP_05228502.1| hypothetical protein MintA_26463 [Mycobacterium intracellulare ATCC 13950] Length=251 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/97 (64%), Positives = 69/97 (72%), Gaps = 4/97 (4%) Query 3 DNECPAD---SRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAIVVATGPIAPLAY 59 D PA SRR V+RLA+FA L FYLVAVA VI ++ +R +V ATGP APL Y Sbjct 9 DGPAPASQPVSRRGPVVRLAVFAAFLAVAFYLVAVAHVIDIEEIRR-VVSATGPAAPLTY 67 Query 60 VVVSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPA 96 VVVSA GALFVPG ILAAGSG+LFGPLL FVTL A Sbjct 68 VVVSAVAGALFVPGSILAAGSGLLFGPLLGVFVTLGA 104 >gi|315446078|ref|YP_004078957.1| hypothetical protein Mspyr1_45710 [Mycobacterium sp. Spyr1] gi|315264381|gb|ADU01123.1| uncharacterized conserved protein [Mycobacterium sp. Spyr1] Length=227 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 58/97 (60%), Positives = 71/97 (74%), Gaps = 2/97 (2%) Query 1 MTD-NECPADSRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAIVVATGPIAPLAY 59 MTD + P S+RR + RLAL +L LFYL A+ARVI V+ VR ++ +TGP+APL Y Sbjct 1 MTDPTDAPETSKRRALARLALVVAVLAVLFYLTAIARVIDVEAVRD-LIESTGPLAPLTY 59 Query 60 VVVSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPA 96 V VSA LGAL VPGP+LAAGSG LFGP++ T VTL A Sbjct 60 VGVSAVLGALLVPGPLLAAGSGFLFGPVVGTVVTLGA 96 >gi|145225727|ref|YP_001136405.1| hypothetical protein Mflv_5151 [Mycobacterium gilvum PYR-GCK] gi|145218213|gb|ABP47617.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] Length=227 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 58/97 (60%), Positives = 72/97 (75%), Gaps = 2/97 (2%) Query 1 MTD-NECPADSRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAIVVATGPIAPLAY 59 MTD + P S+RR ++RLAL +L LFYL A+ARVI V+ VR ++ +TGP+APL Y Sbjct 1 MTDPTDAPETSKRRALVRLALVVAVLAVLFYLTAIARVIDVEAVRD-LIESTGPLAPLTY 59 Query 60 VVVSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPA 96 V VSA LGAL VPGP+LAAGSG LFGP++ T VTL A Sbjct 60 VGVSAVLGALLVPGPLLAAGSGFLFGPVVGTVVTLGA 96 >gi|296168387|ref|ZP_06850292.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896734|gb|EFG76368.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=248 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/92 (68%), Positives = 68/92 (74%), Gaps = 1/92 (1%) Query 5 ECPADSRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAIVVATGPIAPLAYVVVSA 64 E SRR HV RLA+F LL LFYLVAVARVI VD VR +V ATGP AP+ YV VSA Sbjct 17 ESEPTSRRTHVARLAVFVVFLLVLFYLVAVARVIDVDEVRR-VVSATGPAAPVTYVAVSA 75 Query 65 ALGALFVPGPILAAGSGVLFGPLLDTFVTLPA 96 LGALFVPG +LAA SG+LFGP+L FVTL A Sbjct 76 VLGALFVPGAVLAAASGLLFGPVLGVFVTLGA 107 >gi|284042519|ref|YP_003392859.1| hypothetical protein Cwoe_1052 [Conexibacter woesei DSM 14684] gi|283946740|gb|ADB49484.1| SNARE associated Golgi protein-related protein [Conexibacter woesei DSM 14684] Length=243 Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/83 (45%), Positives = 49/83 (60%), Gaps = 4/83 (4%) Query 11 RRRHVLRLALFAGI---LLGLFYLVAVARVIHVDGVRSAIVVATGPIAPLAYVVVSAALG 67 RR ++ LA G+ ++ LF + A + +GVR A V GP+APL +VVVSA L Sbjct 26 RRAQLVALARLLGLGAFVVALFVVAASVFGLSSEGVRDA-VDGVGPLAPLVFVVVSAGLT 84 Query 68 ALFVPGPILAAGSGVLFGPLLDT 90 VPGP+LA SG+LFG L T Sbjct 85 VACVPGPLLAGASGLLFGTALGT 107 >gi|312882173|ref|ZP_07741921.1| AcrB/AcrD/AcrF family protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309370135|gb|EFP97639.1| AcrB/AcrD/AcrF family protein [Vibrio caribbenthicus ATCC BAA-2122] Length=1035 Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 38/117 (33%), Positives = 59/117 (51%), Gaps = 10/117 (8%) Query 18 LALFAGIL-LGLFYLVA------VARVIHVDGV--RSAIVVATGPIAPLAYVVVSAALGA 68 L +FA +L +GL A V RV+H DG+ R A + G I+ A V ++ L A Sbjct 392 LTMFAMVLAIGLLVDDAIVVVENVERVMHEDGLSPREATHKSMGQISS-ALVGIALTLSA 450 Query 69 LFVPGPILAAGSGVLFGPLLDTFVTLPAFSAGAQAGMTPRRCWVSIAPIASMHRSNG 125 +FVP ++ +GV++ T +T A SA +TP C + PI + ++NG Sbjct 451 VFVPMAFMSGSTGVIYRQFSVTIITAMALSAVVALVLTPALCATMLKPIKNEKQANG 507 >gi|345125339|gb|EGW55209.1| rhodanese domain protein [endosymbiont of Tevnia jerichonana (vent Tica)] Length=333 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 28/76 (37%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Query 39 HVD-GVRSAIVVATGPIAPLAYVVVSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPAF 97 H+D G V GP APL ++V+ A LF+PG ++ G LFGP+L TF L Sbjct 27 HIDAGALQQWVEQAGPAAPLLFMVIYAIGTVLFLPGSVMTLAGGALFGPVLGTFYNLTGA 86 Query 98 SAGAQAGMTPRRCWVS 113 + GA R + S Sbjct 87 TIGAVLAFLIARFFTS 102 >gi|95931277|ref|ZP_01313995.1| protein of unknown function DUF224, cysteine-rich region [Desulfuromonas acetoxidans DSM 684] gi|95132671|gb|EAT14352.1| protein of unknown function DUF224, cysteine-rich region [Desulfuromonas acetoxidans DSM 684] Length=602 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/101 (35%), Positives = 49/101 (49%), Gaps = 2/101 (1%) Query 1 MTDNECPADSRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAIVVATGPIAPLAYV 60 MT E SR V+ LAL ++ L + A + + +R I TG APL ++ Sbjct 375 MTTTEQKKKSRLGQVIVLALLIAAIVTL-KMTGAADYLQPEKLRDWIA-GTGFWAPLIFM 432 Query 61 VVSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPAFSAGA 101 V+ A ALF+PG L G+LFGP T+ +AGA Sbjct 433 VLYTAAPALFLPGLPLTILGGILFGPFWGVVYTITGATAGA 473 >gi|300864069|ref|ZP_07108969.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506] gi|300337948|emb|CBN54115.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506] Length=238 Score = 42.4 bits (98), Expect = 0.042, Method: Compositional matrix adjust. Identities = 27/86 (32%), Positives = 45/86 (53%), Gaps = 6/86 (6%) Query 3 DNECPADSRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRS---AIVVATGPIAPLAY 59 DN+ D + +L L GIL + L+ A+ ++ G+ ++ GP P+A+ Sbjct 2 DNQ--PDKNQPSSNKLKLIFGIL-SIIALIVGAKFFNLQGILKDSLELIANLGPWGPVAF 58 Query 60 VVVSAALGALFVPGPILAAGSGVLFG 85 ++V LF+PG +L G+GVLFG Sbjct 59 ILVYILATVLFIPGSLLTLGAGVLFG 84 >gi|117924412|ref|YP_865029.1| rhodanese [Magnetococcus sp. MC-1] gi|117608168|gb|ABK43623.1| Rhodanese domain protein [Magnetococcus sp. MC-1] Length=325 Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 0/50 (0%) Query 52 GPIAPLAYVVVSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPAFSAGA 101 GP+A LA++V+ A F+PG +L G LFGP+L T V L + GA Sbjct 43 GPLAWLAFIVLYAVATVAFLPGSLLTLVGGALFGPILGTLVNLTGATLGA 92 >gi|334119426|ref|ZP_08493512.1| SNARE associated protein [Microcoleus vaginatus FGP-2] gi|333458214|gb|EGK86833.1| SNARE associated protein [Microcoleus vaginatus FGP-2] Length=241 Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust. Identities = 29/88 (33%), Positives = 48/88 (55%), Gaps = 5/88 (5%) Query 1 MTDNECPADSRRRHVLRLALFAGILLGLFYLVAVARVIHVDGV-RSAI--VVATGPIAPL 57 M D+ P ++ R R L GI L + L+A + + G+ ++A+ + + GP P Sbjct 1 MNDSRSPDENPPRSN-RWKLILGIGLAV-ALIAATKFLDFQGILKNALESIASLGPWGPA 58 Query 58 AYVVVSAALGALFVPGPILAAGSGVLFG 85 A++++ LF+PG +L GSGVLFG Sbjct 59 AFILIYIVATVLFIPGSLLTLGSGVLFG 86 >gi|114319913|ref|YP_741596.1| hypothetical protein Mlg_0752 [Alkalilimnicola ehrlichii MLHE-1] gi|114226307|gb|ABI56106.1| conserved hypothetical protein [Alkalilimnicola ehrlichii MLHE-1] Length=229 Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust. Identities = 36/93 (39%), Positives = 50/93 (54%), Gaps = 8/93 (8%) Query 13 RHVLRLALFAGILLGLFYLVAVARVI----HVDGVRSAIVVATGPIAPLAYVVVSAALGA 68 R ++R AL I+LGL ++A+A + VD +R A + GP APLA++ A Sbjct 3 RRLIRKAL---IVLGLTLVIALAWALRDHLQVDVLR-ATLDDLGPWAPLAFMGAYAIAAV 58 Query 69 LFVPGPILAAGSGVLFGPLLDTFVTLPAFSAGA 101 FVPG + GVLFGPL T +L + GA Sbjct 59 GFVPGSVFTLAGGVLFGPLWGTLYSLIGATVGA 91 >gi|17232678|ref|NP_489226.1| hypothetical protein alr5186 [Nostoc sp. PCC 7120] gi|17134325|dbj|BAB76885.1| alr5186 [Nostoc sp. PCC 7120] Length=250 Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust. Identities = 29/104 (28%), Positives = 48/104 (47%), Gaps = 9/104 (8%) Query 1 MTDNECPADSRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAIVV---ATGPIAPL 57 M E +R+ +L + L IL + VAR ++ + +++ + G P+ Sbjct 1 MIPKEQTRFNRKHRLLLIGLTIAIL------IIVARQFNIQALLQTLILWVQSLGFFGPI 54 Query 58 AYVVVSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPAFSAGA 101 AY+++ LF+PG IL SG LFG + L A + GA Sbjct 55 AYMIIYNLATLLFIPGSILTLKSGCLFGVFWGSVYVLIAATVGA 98 >gi|302036507|ref|YP_003796829.1| hypothetical protein NIDE1145 [Candidatus Nitrospira defluvii] gi|300604571|emb|CBK40903.1| conserved membrane protein of unknown function, DedA family [Candidatus Nitrospira defluvii] Length=245 Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust. Identities = 34/114 (30%), Positives = 53/114 (47%), Gaps = 13/114 (11%) Query 2 TDNECPADSRRRHV--LRLALFAGILLGLFYLVAVARVIHVDGVRS------AIVVATGP 53 T E P+ S+R + L L +F G+ L F+ + + + +DG++S A A P Sbjct 10 TSVESPSSSKRAGLGKLMLGIFVGLSLAAFFYFDLGQYLSLDGLKSNRARLLAFTEANYP 69 Query 54 IAPLAYVVVSAALGALFVP-GPILAAGSGVLFGPLLDTFVTLPAFSAGAQAGMT 106 +A +V+ + L +P G I+ G LFG LL T + GA G T Sbjct 70 VAVAMFVLAYCVVVGLSLPGGAIMTLAGGFLFGSLLGTLYV----NVGATVGAT 119 >gi|75908987|ref|YP_323283.1| hypothetical protein Ava_2775 [Anabaena variabilis ATCC 29413] gi|75702712|gb|ABA22388.1| DedA [Anabaena variabilis ATCC 29413] Length=250 Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust. Identities = 27/104 (26%), Positives = 47/104 (46%), Gaps = 9/104 (8%) Query 1 MTDNECPADSRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAIVV---ATGPIAPL 57 M E +R+ +L + L +L + +AR ++ + ++ + G P+ Sbjct 1 MVPKEQTRFNRKHKLLLMGLAIAVL------IVIARQFNIQSLFQTLIFWVQSLGFFGPI 54 Query 58 AYVVVSAALGALFVPGPILAAGSGVLFGPLLDTFVTLPAFSAGA 101 AY+++ LF+PG IL SG LFG + L A + GA Sbjct 55 AYIIIYNLATLLFIPGSILTLKSGCLFGVFWGSVYVLIAATTGA 98 >gi|313896321|ref|ZP_07829874.1| acriflavine resistance protein B [Selenomonas sp. oral taxon 137 str. F0430] gi|320529285|ref|ZP_08030375.1| putative inner membrane multidrug efflux protein BpeB [Selenomonas artemidis F0399] gi|312975120|gb|EFR40582.1| acriflavine resistance protein B [Selenomonas sp. oral taxon 137 str. F0430] gi|320138459|gb|EFW30351.1| putative inner membrane multidrug efflux protein BpeB [Selenomonas artemidis F0399] Length=1063 Score = 38.1 bits (87), Expect = 0.65, Method: Composition-based stats. Identities = 33/111 (30%), Positives = 47/111 (43%), Gaps = 17/111 (15%) Query 18 LALFAGIL-LGLFY---LVAVARVIH--------VDGVRSAIVVATGPIAPLAYVVVSAA 65 L LFA +L +GL +V + V H +D A+ GP+ +A+V Sbjct 393 LTLFAMVLAIGLVVDDAIVVIENVEHHMESGLSPIDATERAMAEVQGPVVAIAFV----- 447 Query 66 LGALFVPGPILAAGSGVLFGPLLDTFVTLPAFSAGAQAGMTPRRCWVSIAP 116 L A+FVP L GVL+ T A SA +TP C + + P Sbjct 448 LAAVFVPVAFLGGMMGVLYKQFALTIAISMALSAFVALTLTPALCALMLKP 498 >gi|148263625|ref|YP_001230331.1| hypothetical protein Gura_1562 [Geobacter uraniireducens Rf4] gi|146397125|gb|ABQ25758.1| protein of unknown function DUF224, cysteine-rich region domain protein [Geobacter uraniireducens Rf4] Length=623 Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust. Identities = 25/85 (30%), Positives = 41/85 (49%), Gaps = 8/85 (9%) Query 25 LLGLFYLVAVARVIHVDGV--------RSAIVVATGPIAPLAYVVVSAALGALFVPGPIL 76 L+ L LVA +H+ G A++ + G +AP Y+++ A LF+PG + Sbjct 407 LIFLVLLVAAVAGVHLSGAAQYLQQEKLQALIASYGVLAPAIYILLYALAPVLFLPGLPI 466 Query 77 AAGSGVLFGPLLDTFVTLPAFSAGA 101 G+LFGP+ T+ + GA Sbjct 467 TIVGGILFGPVWGVVYTITGATIGA 491 >gi|186683627|ref|YP_001866823.1| hypothetical protein Npun_R3472 [Nostoc punctiforme PCC 73102] gi|186466079|gb|ACC81880.1| DedA [Nostoc punctiforme PCC 73102] Length=264 Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust. Identities = 28/90 (32%), Positives = 42/90 (47%), Gaps = 7/90 (7%) Query 31 LVAVARVIHVDGVRSAIVV---ATGPIAPLAYVVVSAALGALFVPGPILAAGSGVLFGPL 87 L+ A+ ++ G+ A V+ + G + P+AY+V+ LF+PG +L G LFG Sbjct 34 LIIAAKQLNFQGLLQASVIWVESLGVLGPIAYIVIYNLATLLFIPGSLLTLKGGCLFGVF 93 Query 88 LDTFVTLPAFSAGAQ----AGMTPRRCWVS 113 + L A GA G R WVS Sbjct 94 WGSIYVLIAAMVGATLAFIIGRYLSRDWVS 123 >gi|334127847|ref|ZP_08501749.1| RND superfamily resistance-nodulation-cell division:proton (H+) antiporter [Centipeda periodontii DSM 2778] gi|333388568|gb|EGK59742.1| RND superfamily resistance-nodulation-cell division:proton (H+) antiporter [Centipeda periodontii DSM 2778] Length=1063 Score = 37.7 bits (86), Expect = 0.93, Method: Composition-based stats. Identities = 33/111 (30%), Positives = 47/111 (43%), Gaps = 17/111 (15%) Query 18 LALFAGIL-LGLFY---LVAVARVIH--------VDGVRSAIVVATGPIAPLAYVVVSAA 65 L LFA +L +GL +V + V H +D A+ GP+ +A+V Sbjct 393 LTLFAMVLAIGLVVDDAIVVIENVEHHMASGLTPIDATERAMSEVQGPVVAIAFV----- 447 Query 66 LGALFVPGPILAAGSGVLFGPLLDTFVTLPAFSAGAQAGMTPRRCWVSIAP 116 L A+FVP L GVL+ T A SA +TP C + + P Sbjct 448 LAAVFVPVAFLGGMMGVLYKQFALTIAISMAISAFVALSLTPALCALMLKP 498 >gi|90581492|ref|ZP_01237286.1| AcrB/AcrD/AcrF family protein [Vibrio angustum S14] gi|90437353|gb|EAS62550.1| AcrB/AcrD/AcrF family protein [Vibrio angustum S14] Length=1043 Score = 37.7 bits (86), Expect = 0.95, Method: Composition-based stats. Identities = 34/113 (31%), Positives = 52/113 (47%), Gaps = 18/113 (15%) Query 18 LALFAGIL-LGLFYLVA------VARVIHVDGV------RSAIVVATGPIAPLAYVVVSA 64 L +FA +L +GL A V RV+H +G+ R ++ TG A V ++ Sbjct 393 LTMFAMVLAIGLLVDDAIVVVENVERVMHEEGLNAVEATRKSMDQITG-----ALVGIAM 447 Query 65 ALGALFVPGPILAAGSGVLFGPLLDTFVTLPAFSAGAQAGMTPRRCWVSIAPI 117 L A+FVP ++ +GV++ T VT A S +TP C + PI Sbjct 448 TLSAVFVPMAFMSGSTGVIYRQFSITIVTAMALSVMVALILTPALCATMLKPI 500 >gi|89073891|ref|ZP_01160398.1| AcrB/AcrD/AcrF family protein [Photobacterium sp. SKA34] gi|89050426|gb|EAR55927.1| AcrB/AcrD/AcrF family protein [Photobacterium sp. SKA34] Length=1043 Score = 37.7 bits (86), Expect = 0.95, Method: Composition-based stats. Identities = 34/113 (31%), Positives = 52/113 (47%), Gaps = 18/113 (15%) Query 18 LALFAGIL-LGLFYLVA------VARVIHVDGV------RSAIVVATGPIAPLAYVVVSA 64 L +FA +L +GL A V RV+H +G+ R ++ TG A V ++ Sbjct 393 LTMFAMVLAIGLLVDDAIVVVENVERVMHEEGLNAVEATRKSMDQITG-----ALVGIAM 447 Query 65 ALGALFVPGPILAAGSGVLFGPLLDTFVTLPAFSAGAQAGMTPRRCWVSIAPI 117 L A+FVP ++ +GV++ T VT A S +TP C + PI Sbjct 448 TLSAVFVPMAFMSGSTGVIYRQFSITIVTAMALSVMVALILTPALCATMLKPI 500 >gi|116749667|ref|YP_846354.1| hypothetical protein Sfum_2237 [Syntrophobacter fumaroxidans MPOB] gi|116698731|gb|ABK17919.1| conserved hypothetical protein [Syntrophobacter fumaroxidans MPOB] Length=266 Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust. Identities = 37/106 (35%), Positives = 47/106 (45%), Gaps = 10/106 (9%) Query 13 RHVLRLALFAGILLGLFYLVAVARVIHV-DGVRSAIVVATGPIAPLAYVVVSAALGALFV 71 R +L LFA + + LF+L V+ V + R GP+ PL V+ L + Sbjct 19 RILLACLLFAAVAVSLFFLPVKKYVLEVLEWTRH-----LGPLGPLVVVLSFLVACVLPI 73 Query 72 PGPILAAGSGVLFGPLLDTFVTLPAFSAGA----QAGMTPRRCWVS 113 PG ILA GSG LFGP T + GA G T R WV Sbjct 74 PGSILAMGSGFLFGPFGGTATAATGCTLGACFAFILGRTIARSWVE 119 >gi|260886616|ref|ZP_05897879.1| multidrug efflux RND transporter MexF [Selenomonas sputigena ATCC 35185] gi|330839550|ref|YP_004414130.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Selenomonas sputigena ATCC 35185] gi|260863759|gb|EEX78259.1| multidrug efflux RND transporter MexF [Selenomonas sputigena ATCC 35185] gi|329747314|gb|AEC00671.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Selenomonas sputigena ATCC 35185] Length=1065 Score = 37.7 bits (86), Expect = 0.97, Method: Composition-based stats. Identities = 34/113 (31%), Positives = 48/113 (43%), Gaps = 17/113 (15%) Query 18 LALFAGIL-LGLFY---LVAVARVIH--------VDGVRSAIVVATGPIAPLAYVVVSAA 65 L LFA +L +GL +V + V H +D A+ GP+ +A+V Sbjct 393 LTLFAMVLAIGLVVDDAIVVIENVEHHMEEGLNVIDATERAMDEVQGPVVAIAFV----- 447 Query 66 LGALFVPGPILAAGSGVLFGPLLDTFVTLPAFSAGAQAGMTPRRCWVSIAPIA 118 L A+FVP L GVL+ T A SA +TP C + + P A Sbjct 448 LAAVFVPVAFLGGMMGVLYKQFALTIAISMAISAFVALSLTPALCALILKPHA 500 >gi|338849388|gb|AEJ27599.1| RND efflux system inner membrane transporter protein [Paracoccus denitrificans SD1] Length=430 Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust. Identities = 33/112 (30%), Positives = 51/112 (46%), Gaps = 5/112 (4%) Query 18 LALFAGILL--GLFYLVAVARVIHVDGV--RSAIVVATGPIAPLAYVVVSAALGALFVPG 73 + L GIL+ + + V R++ +G+ R A A G I+ A V ++ L A+FVP Sbjct 139 MVLAIGILVDDAIVVIENVERIMATEGLPPREATQKAMGQISG-AIVGITLVLAAVFVPM 197 Query 74 PILAAGSGVLFGPLLDTFVTLPAFSAGAQAGMTPRRCWVSIAPIASMHRSNG 125 SG+++ T V FSA +TP C + PI+ H G Sbjct 198 AFFPGSSGIIYRQFALTMVVSILFSAFLALTLTPALCATFLKPISGHHEKKG 249 >gi|292670164|ref|ZP_06603590.1| RND superfamily drug:proton (H+) antiporter [Selenomonas noxia ATCC 43541] gi|292648116|gb|EFF66088.1| RND superfamily drug:proton (H+) antiporter [Selenomonas noxia ATCC 43541] Length=1063 Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 33/111 (30%), Positives = 47/111 (43%), Gaps = 17/111 (15%) Query 18 LALFAGIL-LGLFY---LVAVARVIH--------VDGVRSAIVVATGPIAPLAYVVVSAA 65 L LFA +L +GL +V + V H +D A+ GP+ +A+V Sbjct 393 LTLFAMVLAIGLVVDDAIVVIENVEHHMESGLSPIDATERAMDEVQGPVVAIAFV----- 447 Query 66 LGALFVPGPILAAGSGVLFGPLLDTFVTLPAFSAGAQAGMTPRRCWVSIAP 116 L A+FVP L GVL+ T A SA +TP C + + P Sbjct 448 LAAVFVPVAFLGGMMGVLYKQFALTIAISMALSAFVALTLTPALCAMMLKP 498 >gi|238926903|ref|ZP_04658663.1| possible acridine efflux pump [Selenomonas flueggei ATCC 43531] gi|238885137|gb|EEQ48775.1| possible acridine efflux pump [Selenomonas flueggei ATCC 43531] Length=577 Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust. Identities = 34/111 (31%), Positives = 47/111 (43%), Gaps = 17/111 (15%) Query 18 LALFAGIL-LGLFY---LVAVARVIH--------VDGVRSAIVVATGPIAPLAYVVVSAA 65 L LFA +L +GL +V + V H VD A+ GP+ +A+V Sbjct 393 LTLFAMVLAIGLVVDDAIVVIENVEHHMESGLSPVDATERAMAEVQGPVVAIAFV----- 447 Query 66 LGALFVPGPILAAGSGVLFGPLLDTFVTLPAFSAGAQAGMTPRRCWVSIAP 116 L A+FVP L GVL+ T A SA +TP C + + P Sbjct 448 LAAVFVPVAFLGGMMGVLYKQFALTIAIAMALSAFVALTLTPALCAMMLKP 498 >gi|304436757|ref|ZP_07396725.1| RND superfamily drug:proton (H+) antiporter [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370237|gb|EFM23894.1| RND superfamily drug:proton (H+) antiporter [Selenomonas sp. oral taxon 149 str. 67H29BP] Length=1063 Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 33/111 (30%), Positives = 46/111 (42%), Gaps = 17/111 (15%) Query 18 LALFAGIL-LGLFY---LVAVARVIH--------VDGVRSAIVVATGPIAPLAYVVVSAA 65 L LFA +L +GL +V + V H VD A+ GP+ +A+V Sbjct 393 LTLFAMVLAIGLVVDDAIVVIENVEHHMESGLSPVDATERAMAEVQGPVVAIAFV----- 447 Query 66 LGALFVPGPILAAGSGVLFGPLLDTFVTLPAFSAGAQAGMTPRRCWVSIAP 116 L A+FVP L GVL+ T SA +TP C + + P Sbjct 448 LAAVFVPVAFLGGMMGVLYKQFALTIAIAMGLSAFVALTLTPALCALMLKP 498 >gi|338811703|ref|ZP_08623908.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein [Acetonema longum DSM 6540] gi|337276240|gb|EGO64672.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein [Acetonema longum DSM 6540] Length=1047 Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 23/82 (29%), Positives = 38/82 (47%), Gaps = 5/82 (6%) Query 35 ARVIHVDGVRSAIVVATGPIAPLAYVVVSAALGALFVPGPILAAGSGVLFGPLLDTFVTL 94 +R+ ++ R A+ +GP+ +A+V L A+FVP + GVL+ T Sbjct 423 SRLTPLEATRRAMDEVSGPVIAIAFV-----LAAVFVPVAFIGGMVGVLYRQFALTIAVS 477 Query 95 PAFSAGAQAGMTPRRCWVSIAP 116 A SA +TP C + + P Sbjct 478 MALSALVALSLTPALCALLLKP 499 >gi|32476849|ref|NP_869843.1| hypothetical protein RB11207 [Rhodopirellula baltica SH 1] gi|32447397|emb|CAD78986.1| conserved hypothetical protein [Rhodopirellula baltica SH 1] Length=538 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 31/122 (26%), Positives = 55/122 (46%), Gaps = 4/122 (3%) Query 6 CPADSRRRHVLRLALFAGILLGLFYLVAVARVIHVDGVRSAIVVATGPIA---PLAYVVV 62 PA++ + + + I + + L+ + R + D V SA+ G + P+ V++ Sbjct 1 MPAETTAAKINQYVRWGSIAIVVVSLLVIIRTLPFDVVTSAMNEWIGSLGWWGPVVLVLL 60 Query 63 SAALGALFVPGPILAAGSGVLFGPLLDTFVTLPAFSAGAQAGMTPRRCWVSIAPIASMHR 122 LFVPG IL +G +FG L+ T V + GA R +V+ +A + + Sbjct 61 YIVATVLFVPGTILTLAAGAIFGLLVGTIVVSIGSTIGAALAFLISR-YVARERVAKLAK 119 Query 123 SN 124 N Sbjct 120 DN 121 >gi|225025203|ref|ZP_03714395.1| hypothetical protein EIKCOROL_02100 [Eikenella corrodens ATCC 23834] gi|224941961|gb|EEG23170.1| hypothetical protein EIKCOROL_02100 [Eikenella corrodens ATCC 23834] Length=1082 Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats. Identities = 28/90 (32%), Positives = 44/90 (49%), Gaps = 3/90 (3%) Query 34 VARVIHVDGV--RSAIVVATGPIAPLAYVVVSAALGALFVPGPILAAGSGVLFGPLLDTF 91 V R++ +G+ R A A G I+ A V ++A L ++FVP + + +G ++ T Sbjct 414 VERIMSEEGLPPREATHKAMGQISG-AVVGITAVLISVFVPLAMFSGATGKIYQQFAITM 472 Query 92 VTLPAFSAGAQAGMTPRRCWVSIAPIASMH 121 V AFSA +TP C + PI H Sbjct 473 VLSIAFSAFLALSLTPALCASLLKPIEKGH 502 >gi|340029272|ref|ZP_08665335.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Paracoccus sp. TRP] Length=1041 Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 32/112 (29%), Positives = 49/112 (44%), Gaps = 5/112 (4%) Query 18 LALFAGILL--GLFYLVAVARVIHVDGV--RSAIVVATGPIAPLAYVVVSAALGALFVPG 73 + L GIL+ + + V R++ +G+ R A A I+ A V ++ L A+FVP Sbjct 398 MVLAIGILVDDAIVVIENVERIMASEGLPPREATEKAMDQISG-AIVGITLVLAAVFVPM 456 Query 74 PILAAGSGVLFGPLLDTFVTLPAFSAGAQAGMTPRRCWVSIAPIASMHRSNG 125 SG+++ T V FSA +TP C + PI H G Sbjct 457 AFFPGSSGIIYRQFALTMVVSILFSAFLALTLTPALCATFLKPINGHHEKKG 508 Lambda K H 0.326 0.136 0.452 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 208621361780 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40