BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2307B
Length=143
Score E
Sequences producing significant alignments: (Bits) Value
gi|31793488|ref|NP_855981.1| glycine rich protein [Mycobacterium... 288 2e-76
gi|289754410|ref|ZP_06513788.1| glycine rich protein [Mycobacter... 286 7e-76
gi|15841802|ref|NP_336839.1| hypothetical protein MT2365.1 [Myco... 271 2e-71
gi|120404998|ref|YP_954827.1| hypothetical protein Mvan_4044 [My... 62.8 2e-08
gi|15839438|ref|NP_334475.1| hypothetical protein MT0066.1 [Myco... 59.3 2e-07
gi|254233460|ref|ZP_04926786.1| hypothetical protein TBCG_00060 ... 57.8 6e-07
gi|308232627|ref|ZP_07664136.1| hypothetical protein TMAG_00731 ... 55.8 2e-06
gi|118619016|ref|YP_907348.1| hypothetical protein MUL_3771 [Myc... 55.1 4e-06
gi|183983814|ref|YP_001852105.1| hypothetical protein MMAR_3839 ... 53.9 7e-06
gi|183983815|ref|YP_001852106.1| hypothetical protein MMAR_3840 ... 52.8 2e-05
gi|109521896|ref|YP_655333.1| gp56 [Mycobacterium phage Pipefish... 52.8 2e-05
gi|222435724|ref|YP_002564152.1| gp54 [Mycobacterium phage Phlye... 47.4 7e-04
gi|194303248|ref|YP_002014662.1| gp51 [Mycobacterium phage Phaed... 47.4 7e-04
gi|326905821|gb|EGE52754.1| hypothetical protein TBPG_03787 [Myc... 45.8 0.002
gi|240170091|ref|ZP_04748750.1| hypothetical protein MkanA1_1231... 41.2 0.045
gi|29566245|ref|NP_817813.1| gp52 [Mycobacterium phage Rosebush]... 40.8 0.073
gi|296532124|ref|ZP_06894891.1| hypothetical protein HMPREF0731_... 35.0 4.0
gi|120405868|ref|YP_955697.1| hypothetical protein Mvan_4918 [My... 33.5 9.9
>gi|31793488|ref|NP_855981.1| glycine rich protein [Mycobacterium bovis AF2122/97]
gi|57116965|ref|YP_177666.1| glycine rich protein [Mycobacterium tuberculosis H37Rv]
gi|121638191|ref|YP_978415.1| hypothetical protein BCG_2326c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
49 more sequence titles
Length=143
Score = 288 bits (738), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 142/143 (99%), Positives = 143/143 (100%), Gaps = 0/143 (0%)
Query 1 VEEVPTGPPAMGHRACGGQKAAFPTRMNSGVEKMYKNSIAIAIGTLTMAVEFSMVSANAE 60
+EEVPTGPPAMGHRACGGQKAAFPTRMNSGVEKMYKNSIAIAIGTLTMAVEFSMVSANAE
Sbjct 1 MEEVPTGPPAMGHRACGGQKAAFPTRMNSGVEKMYKNSIAIAIGTLTMAVEFSMVSANAE 60
Query 61 PAPPPGQDPHMPNSAMGYCPGGGFGGITGWGYCDGIRYPDGSYWHQVRVPAPFVGTTLTL 120
PAPPPGQDPHMPNSAMGYCPGGGFGGITGWGYCDGIRYPDGSYWHQVRVPAPFVGTTLTL
Sbjct 61 PAPPPGQDPHMPNSAMGYCPGGGFGGITGWGYCDGIRYPDGSYWHQVRVPAPFVGTTLTL 120
Query 121 SCVIDDGSPVPPLAAPGSCGGGA 143
SCVIDDGSPVPPLAAPGSCGGGA
Sbjct 121 SCVIDDGSPVPPLAAPGSCGGGA 143
>gi|289754410|ref|ZP_06513788.1| glycine rich protein [Mycobacterium tuberculosis EAS054]
gi|289694997|gb|EFD62426.1| glycine rich protein [Mycobacterium tuberculosis EAS054]
Length=143
Score = 286 bits (732), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 141/143 (99%), Positives = 142/143 (99%), Gaps = 0/143 (0%)
Query 1 VEEVPTGPPAMGHRACGGQKAAFPTRMNSGVEKMYKNSIAIAIGTLTMAVEFSMVSANAE 60
+EEVPTGPPAMGHRACGGQKAAFPTR NSGVEKMYKNSIAIAIGTLTMAVEFSMVSANAE
Sbjct 1 MEEVPTGPPAMGHRACGGQKAAFPTRTNSGVEKMYKNSIAIAIGTLTMAVEFSMVSANAE 60
Query 61 PAPPPGQDPHMPNSAMGYCPGGGFGGITGWGYCDGIRYPDGSYWHQVRVPAPFVGTTLTL 120
PAPPPGQDPHMPNSAMGYCPGGGFGGITGWGYCDGIRYPDGSYWHQVRVPAPFVGTTLTL
Sbjct 61 PAPPPGQDPHMPNSAMGYCPGGGFGGITGWGYCDGIRYPDGSYWHQVRVPAPFVGTTLTL 120
Query 121 SCVIDDGSPVPPLAAPGSCGGGA 143
SCVIDDGSPVPPLAAPGSCGGGA
Sbjct 121 SCVIDDGSPVPPLAAPGSCGGGA 143
>gi|15841802|ref|NP_336839.1| hypothetical protein MT2365.1 [Mycobacterium tuberculosis CDC1551]
gi|13882064|gb|AAK46653.1| hypothetical protein MT2365.1 [Mycobacterium tuberculosis CDC1551]
Length=133
Score = 271 bits (693), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 133/133 (100%), Positives = 133/133 (100%), Gaps = 0/133 (0%)
Query 11 MGHRACGGQKAAFPTRMNSGVEKMYKNSIAIAIGTLTMAVEFSMVSANAEPAPPPGQDPH 70
MGHRACGGQKAAFPTRMNSGVEKMYKNSIAIAIGTLTMAVEFSMVSANAEPAPPPGQDPH
Sbjct 1 MGHRACGGQKAAFPTRMNSGVEKMYKNSIAIAIGTLTMAVEFSMVSANAEPAPPPGQDPH 60
Query 71 MPNSAMGYCPGGGFGGITGWGYCDGIRYPDGSYWHQVRVPAPFVGTTLTLSCVIDDGSPV 130
MPNSAMGYCPGGGFGGITGWGYCDGIRYPDGSYWHQVRVPAPFVGTTLTLSCVIDDGSPV
Sbjct 61 MPNSAMGYCPGGGFGGITGWGYCDGIRYPDGSYWHQVRVPAPFVGTTLTLSCVIDDGSPV 120
Query 131 PPLAAPGSCGGGA 143
PPLAAPGSCGGGA
Sbjct 121 PPLAAPGSCGGGA 133
>gi|120404998|ref|YP_954827.1| hypothetical protein Mvan_4044 [Mycobacterium vanbaalenii PYR-1]
gi|119957816|gb|ABM14821.1| hypothetical protein Mvan_4044 [Mycobacterium vanbaalenii PYR-1]
Length=128
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/134 (36%), Positives = 62/134 (47%), Gaps = 13/134 (9%)
Query 9 PAMGHRACGGQKAAFPTRMNSGVEKMYKNSIAIAIGTLTMAVEFSMVSANAEPAPPPGQD 68
PA G R C K R+ G M + + +A+ V + A A+P
Sbjct 5 PATGERPCFNVKR---LRLLGG-RTMVRAKLYVAVLVALSCVLAAPGVAEADPT------ 54
Query 69 PHMPNSAMGYCPGGGFGGITGWGYCDGIRYPDGSYWHQVRVP-APFVGTTLTLSCVIDDG 127
PN A G CPGG GGI +C+G ++PDGSYWH V + F ++CVI+D
Sbjct 55 -QKPNIATGDCPGG-TGGILAVAWCNGEKFPDGSYWHNVAMTGGTFATPRFEMNCVINDA 112
Query 128 SPVPPLAAPGSCGG 141
P A PG CGG
Sbjct 113 FPSGTPAPPGGCGG 126
>gi|15839438|ref|NP_334475.1| hypothetical protein MT0066.1 [Mycobacterium tuberculosis CDC1551]
gi|148821251|ref|YP_001286005.1| hypothetical protein TBFG_10060 [Mycobacterium tuberculosis F11]
gi|253796976|ref|YP_003029977.1| hypothetical protein TBMG_00060 [Mycobacterium tuberculosis KZN
1435]
20 more sequence titles
Length=126
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query 26 RMNSGVEKMYKNSIAIAIGTLTMAVEFSMVSANAEPAPPPGQDPHMPNSAMGYCPGG--G 83
R+ K+ ++ AI A+ F A+A+P DPH P+ GYCPGG G
Sbjct 9 RLTEFEMKLKFARLSTAILGCAAALVFPASVASADPP-----DPHQPDMTKGYCPGGRWG 63
Query 84 FGGITGWGYCDGIRYPDGSYWHQVRVPAPFVGTTLTLSCV 123
FG + CDG +YPDGS+WHQ + F G CV
Sbjct 64 FGDL---AVCDGEKYPDGSFWHQW-MQTWFTGPQFYFDCV 99
>gi|254233460|ref|ZP_04926786.1| hypothetical protein TBCG_00060 [Mycobacterium tuberculosis C]
gi|289445587|ref|ZP_06435331.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|124603253|gb|EAY61528.1| hypothetical protein TBCG_00060 [Mycobacterium tuberculosis C]
gi|289418545|gb|EFD15746.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=112
Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/93 (39%), Positives = 47/93 (51%), Gaps = 11/93 (11%)
Query 33 KMYKNSIAIAIGTLTMAVEFSMVSANAEPAPPPGQDPHMPNSAMGYCPGG--GFGGITGW 90
K+ ++ AI A+ F A+A+P DPH P+ GYCPGG GFG +
Sbjct 2 KLKFARLSTAILGCAAALVFPASVASADPP-----DPHQPDMTKGYCPGGRWGFGDL--- 53
Query 91 GYCDGIRYPDGSYWHQVRVPAPFVGTTLTLSCV 123
CDG +YPDGS+WHQ + F G CV
Sbjct 54 AVCDGEKYPDGSFWHQ-WMQTWFTGPQFYFDCV 85
>gi|308232627|ref|ZP_07664136.1| hypothetical protein TMAG_00731 [Mycobacterium tuberculosis SUMu001]
gi|308213493|gb|EFO72892.1| hypothetical protein TMAG_00731 [Mycobacterium tuberculosis SUMu001]
Length=93
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/72 (46%), Positives = 39/72 (55%), Gaps = 8/72 (11%)
Query 54 MVSANAEPAPPPGQDPHMPNSAMGYCPGG--GFGGITGWGYCDGIRYPDGSYWHQVRVPA 111
M A+ A PP DPH P+ GYCPGG GFG + CDG +YPDGS+WHQ +
Sbjct 1 MFPASVASADPP--DPHQPDMTKGYCPGGRWGFGDL---AVCDGEKYPDGSFWHQW-MQT 54
Query 112 PFVGTTLTLSCV 123
F G CV
Sbjct 55 WFTGPQFYFDCV 66
>gi|118619016|ref|YP_907348.1| hypothetical protein MUL_3771 [Mycobacterium ulcerans Agy99]
gi|118571126|gb|ABL05877.1| conserved hypothetical secreted protein [Mycobacterium ulcerans
Agy99]
Length=136
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/82 (46%), Positives = 44/82 (54%), Gaps = 13/82 (15%)
Query 29 SGVEKMYKNS-IAIAIGTLTMAVEFSMVSANAEPAPPPGQDPHMPNSAMGYCPGGGFGGI 87
GV+ M K S + AI A+ FS A A P DPH P+ GYCPGG +G
Sbjct 13 DGVKMMLKLSRLGAAILGGVAALMFSTAVATAGPP-----DPHQPDMTKGYCPGGRWG-- 65
Query 88 TGWG---YCDGIRYPDGSYWHQ 106
WG CDG +YPDGS+WHQ
Sbjct 66 --WGELAVCDGEKYPDGSFWHQ 85
>gi|183983814|ref|YP_001852105.1| hypothetical protein MMAR_3839 [Mycobacterium marinum M]
gi|183177140|gb|ACC42250.1| conserved hypothetical secreted protein [Mycobacterium marinum
M]
Length=114
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/61 (50%), Positives = 36/61 (60%), Gaps = 12/61 (19%)
Query 49 AVEFSMVSANAEPAPPPGQDPHMPNSAMGYCPGGGFGGITGWG---YCDGIRYPDGSYWH 105
A+ FS A A+P DPH P+ GYCPGG +G WG CDG +YPDGS+WH
Sbjct 18 ALMFSTAVATADPP-----DPHQPDMTKGYCPGGRWG----WGELAVCDGEKYPDGSFWH 68
Query 106 Q 106
Q
Sbjct 69 Q 69
>gi|183983815|ref|YP_001852106.1| hypothetical protein MMAR_3840 [Mycobacterium marinum M]
gi|183177141|gb|ACC42251.1| conserved hypothetical secreted protein [Mycobacterium marinum
M]
Length=120
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/56 (52%), Positives = 33/56 (59%), Gaps = 9/56 (16%)
Query 54 MVSANAEPAPPPGQDPHMPNSAMGYCPGGGFGGITGWG---YCDGIRYPDGSYWHQ 106
M S A PP DPH P+ GYCPGG +G WG CDG +YPDGS+WHQ
Sbjct 20 MFSTAVATAGPP--DPHQPDMTKGYCPGGRWG----WGELAVCDGEKYPDGSFWHQ 69
>gi|109521896|ref|YP_655333.1| gp56 [Mycobacterium phage Pipefish]
gi|88910627|gb|ABD58553.1| gp56 [Mycobacterium phage Pipefish]
Length=111
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/118 (39%), Positives = 57/118 (49%), Gaps = 9/118 (7%)
Query 27 MNSGVEKMYKNSIAIAIGTLTMAVEFSMVSANAEPAPPPGQDPHMPNSAMGYCPGGGFGG 86
MN KM +A T+ + V + A AP DP+ P + +CPGGG
Sbjct 1 MNLSRWKMAGRLFLVAAATVVLIVCAVGWTGRANAAP----DPYWPIPPV-WCPGGG--T 53
Query 87 ITGWG-YCDGIRYPDGSYWHQVRVPAPFVGTTLT-LSCVIDDGSPVPPLAAPGSCGGG 142
+T WG YCDG YPDG+ WH APFVG + CV+ PPLA P CG G
Sbjct 54 MTSWGGYCDGTPYPDGTKWHMDSFVAPFVGRVWNPIVCVVHPAPAPPPLAPPTGCGRG 111
>gi|222435724|ref|YP_002564152.1| gp54 [Mycobacterium phage Phlyer]
gi|222088277|gb|ACM42218.1| gp54 [Mycobacterium phage Phlyer]
Length=104
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/93 (38%), Positives = 46/93 (50%), Gaps = 9/93 (9%)
Query 34 MYKNSIAIAIGTLTMAVEFSMVSANAEPAPPPGQDPHMPNSAMGYCPGGGFGGITGWG-Y 92
M + +A T + V + A AP DP+ P + +CPGGG +T WG Y
Sbjct 1 MAGRLLLVAAATAVLIVCAVGWTGRANAAP----DPYWPIPPV-WCPGGGT--MTSWGGY 53
Query 93 CDGIRYPDGSYWHQVRVPAPFVGTTLT-LSCVI 124
CDG YPDG+ WH APFVG + CV+
Sbjct 54 CDGTPYPDGTKWHMDSFVAPFVGRVWNPIVCVV 86
>gi|194303248|ref|YP_002014662.1| gp51 [Mycobacterium phage Phaedrus]
gi|194150980|gb|ACF34015.1| gp51 [Mycobacterium phage Phaedrus]
gi|339754713|gb|AEJ94726.1| gp54 [Mycobacterium phage Daisy]
Length=115
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/89 (45%), Positives = 47/89 (53%), Gaps = 11/89 (12%)
Query 56 SANAEPAPPPGQDPHMPNSAMGYCPGGGFGGITGWG-YCDGIRYPDGSYWHQVRVPAPFV 114
ANA P DP+ P + +CPGGG +T WG YCDG YPDG+ WH APFV
Sbjct 36 RANATP------DPYWPIPPV-WCPGGG--TMTSWGGYCDGTPYPDGTKWHMDSFVAPFV 86
Query 115 GTTLT-LSCVIDDGSPVPPLAAPGSCGGG 142
G + CV+ PPLA P CG G
Sbjct 87 GRVWNPIVCVVHPAPAPPPLAPPTGCGRG 115
>gi|326905821|gb|EGE52754.1| hypothetical protein TBPG_03787 [Mycobacterium tuberculosis W-148]
Length=66
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/73 (40%), Positives = 39/73 (54%), Gaps = 10/73 (13%)
Query 33 KMYKNSIAIAIGTLTMAVEFSMVSANAEPAPPPGQDPHMPNSAMGYCPGG--GFGGITGW 90
K+ ++ AI A+ F A+A+P DPH P+ GYCPGG GFG +
Sbjct 2 KLKFARLSTAILGCAAALVFPASVASADP-----PDPHQPDMTKGYCPGGRWGFGDLA-- 54
Query 91 GYCDGIRYPDGSY 103
CDG +YPDGS+
Sbjct 55 -VCDGEKYPDGSF 66
>gi|240170091|ref|ZP_04748750.1| hypothetical protein MkanA1_12311 [Mycobacterium kansasii ATCC
12478]
Length=77
Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/54 (47%), Positives = 29/54 (54%), Gaps = 6/54 (11%)
Query 75 AMGYCPGG--GFGGITGWGYCDGIRYPDGSYWHQVRVPAPFVGTTLTLSCVIDD 126
MGYCPGG GFG + CDG +YPDGS+WHQ + G CV D
Sbjct 2 TMGYCPGGRWGFGELA---VCDGEKYPDGSFWHQW-MRTYMTGPQWYYDCVSGD 51
>gi|29566245|ref|NP_817813.1| gp52 [Mycobacterium phage Rosebush]
gi|109521833|ref|YP_655729.1| gp49 [Mycobacterium phage Qyrzula]
gi|29424970|gb|AAN01894.1| gp52 [Mycobacterium phage Rosebush]
gi|91980777|gb|ABE67495.1| gp49 [Mycobacterium phage Qyrzula]
gi|345102612|gb|AEN70214.1| hypothetical protein [Mycobacterium phage AnnaL29]
Length=111
Score = 40.8 bits (94), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/71 (41%), Positives = 40/71 (57%), Gaps = 7/71 (9%)
Query 68 DPHMPNSAMGYCPGGGFG-GITGWG-YCDGIRYPDGSYWHQVRVPAPFVGTTLTLSCVID 125
DP +P +CPG G G +GWG YC+G +PDG+ + R+ + L C+I
Sbjct 38 DPRVPAPPF-WCPGNGPGMSASGWGGYCEGQSFPDGTRLNTFRIGYWWQ----PLRCIIP 92
Query 126 DGSPVPPLAAP 136
+GSP PPLA P
Sbjct 93 NGSPTPPLAGP 103
>gi|296532124|ref|ZP_06894891.1| hypothetical protein HMPREF0731_0371 [Roseomonas cervicalis ATCC
49957]
gi|296267548|gb|EFH13406.1| hypothetical protein HMPREF0731_0371 [Roseomonas cervicalis ATCC
49957]
Length=180
Score = 35.0 bits (79), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/89 (31%), Positives = 38/89 (43%), Gaps = 4/89 (4%)
Query 55 VSANAEPAPPPGQDPHMPNSAMGYCPGGGFGGITGWGYCDGIRYPDGSYWHQVRVPAPFV 114
V+++ +P P ++ HM + M GG G C+ DG WH+ A
Sbjct 89 VASDRQPRP---EEYHMTLARMHTAIGGQSTAKDVEGSCELSLSADGQTWHRATCEATDR 145
Query 115 GTTLTLSCVIDDGSPVPPLAAPGSCGGGA 143
+T I +G PV A PG GGGA
Sbjct 146 SQRVTRMTFIGNGQPVRA-ARPGQEGGGA 173
>gi|120405868|ref|YP_955697.1| hypothetical protein Mvan_4918 [Mycobacterium vanbaalenii PYR-1]
gi|119958686|gb|ABM15691.1| hypothetical protein Mvan_4918 [Mycobacterium vanbaalenii PYR-1]
Length=94
Score = 33.5 bits (75), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/53 (48%), Positives = 26/53 (50%), Gaps = 4/53 (7%)
Query 85 GGITGWG---YCDGIRYPDGSYWHQVRVPAP-FVGTTLTLSCVIDDGSPVPPL 133
GG T WG YCDG Y DGSY H V V F GT C D +P PL
Sbjct 30 GGWTPWGGGEYCDGYIYEDGSYDHCVSVTVLGFGGTQCNRVCPPDPANPAVPL 82
Lambda K H
0.317 0.138 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129250525032
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40