BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2307D

Length=60
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15841803|ref|NP_336840.1|  hypothetical protein MT2365.2 [Myco...   120    5e-26


>gi|15841803|ref|NP_336840.1| hypothetical protein MT2365.2 [Mycobacterium tuberculosis CDC1551]
 gi|31793489|ref|NP_855982.1| hypothetical protein Mb2333c [Mycobacterium bovis AF2122/97]
 gi|57116966|ref|YP_177667.1| hypothetical protein Rv2307D [Mycobacterium tuberculosis H37Rv]
 28 more sequence titles
 
gi|121638192|ref|YP_978416.1| hypothetical protein BCG_2327c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|167969846|ref|ZP_02552123.1| hypothetical protein MtubH3_18209 [Mycobacterium tuberculosis 
H37Ra]
 gi|224990686|ref|YP_002645373.1| hypothetical protein JTY_2321 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|289443820|ref|ZP_06433564.1| hypothetical protein TBLG_00922 [Mycobacterium tuberculosis T46]
 gi|289447943|ref|ZP_06437687.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289570430|ref|ZP_06450657.1| hypothetical protein TBJG_00797 [Mycobacterium tuberculosis T17]
 gi|289745582|ref|ZP_06504960.1| excalibur calcium-binding domain-containing protein [Mycobacterium 
tuberculosis 02_1987]
 gi|289750909|ref|ZP_06510287.1| hypothetical protein TBDG_01119 [Mycobacterium tuberculosis T92]
 gi|289762471|ref|ZP_06521849.1| hypothetical protein TBIG_01708 [Mycobacterium tuberculosis GM 
1503]
 gi|339632331|ref|YP_004723973.1| hypothetical protein MAF_23180 [Mycobacterium africanum GM041182]
 gi|340627317|ref|YP_004745769.1| hypothetical protein MCAN_23371 [Mycobacterium canettii CIPT 
140010059]
 gi|13882065|gb|AAK46654.1| hypothetical protein MT2365.2 [Mycobacterium tuberculosis CDC1551]
 gi|31619082|emb|CAD97194.1| HYPOTHETICAL PROTEIN Mb2333c [Mycobacterium bovis AF2122/97]
 gi|41353680|emb|CAE55469.1| HYPOTHETICAL PROTEIN Rv2307D [Mycobacterium tuberculosis H37Rv]
 gi|121493840|emb|CAL72315.1| Hypothetical protein BCG_2327c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224773799|dbj|BAH26605.1| hypothetical protein JTY_2321 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|289416739|gb|EFD13979.1| hypothetical protein TBLG_00922 [Mycobacterium tuberculosis T46]
 gi|289420901|gb|EFD18102.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289544184|gb|EFD47832.1| hypothetical protein TBJG_00797 [Mycobacterium tuberculosis T17]
 gi|289686110|gb|EFD53598.1| excalibur calcium-binding domain-containing protein [Mycobacterium 
tuberculosis 02_1987]
 gi|289691496|gb|EFD58925.1| hypothetical protein TBDG_01119 [Mycobacterium tuberculosis T92]
 gi|289709977|gb|EFD73993.1| hypothetical protein TBIG_01708 [Mycobacterium tuberculosis GM 
1503]
 gi|323719211|gb|EGB28356.1| hypothetical protein TMMG_01591 [Mycobacterium tuberculosis CDC1551A]
 gi|326903921|gb|EGE50854.1| hypothetical protein TBPG_01808 [Mycobacterium tuberculosis W-148]
 gi|339331687|emb|CCC27388.1| hypothetical protein MAF_23180 [Mycobacterium africanum GM041182]
 gi|340005507|emb|CCC44668.1| hypothetical protein MCAN_23371 [Mycobacterium canettii CIPT 
140010059]
 gi|341602230|emb|CCC64904.1| hypothetical protein BCGM_2311c [Mycobacterium bovis BCG str. 
Moreau RDJ]
 gi|344220132|gb|AEN00763.1| hypothetical protein MTCTRI2_2346 [Mycobacterium tuberculosis 
CTRI-2]
Length=60

 Score =  120 bits (302),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 60/60 (100%), Positives = 60/60 (100%), Gaps = 0/60 (0%)

Query  1   MWRHLWLMQPQRRYPRGSGTTRTARRDAGVAPLYGVSRVTVLASTTATTAPPVKSFPDLL  60
           MWRHLWLMQPQRRYPRGSGTTRTARRDAGVAPLYGVSRVTVLASTTATTAPPVKSFPDLL
Sbjct  1   MWRHLWLMQPQRRYPRGSGTTRTARRDAGVAPLYGVSRVTVLASTTATTAPPVKSFPDLL  60



Lambda     K      H
   0.321    0.132    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127366071138


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40