BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2310
Length=114
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609447|ref|NP_216826.1| excisionase [Mycobacterium tubercul... 220 6e-56
gi|289553903|ref|ZP_06443113.1| excisionase [Mycobacterium tuber... 218 2e-55
gi|269793693|ref|YP_003313148.1| excisionase family DNA-binding ... 131 3e-29
gi|226364837|ref|YP_002782619.1| hypothetical protein ROP_54270 ... 123 8e-27
gi|8517283|gb|AAF76245.1| putative excisionase [Arthrobacter sp.... 106 9e-22
gi|296130825|ref|YP_003638075.1| DNA binding domain protein, exc... 99.8 1e-19
gi|260904670|ref|ZP_05912992.1| putative excisionase [Brevibacte... 93.2 1e-17
gi|38232871|ref|NP_938638.1| putative excisionase [Corynebacteri... 84.7 4e-15
gi|227549095|ref|ZP_03979144.1| excisionase family DNA binding d... 84.7 4e-15
gi|329948013|ref|ZP_08294914.1| DNA binding domain, excisionase ... 84.3 5e-15
gi|325066647|ref|ZP_08125320.1| excisionase/Xis, DNA-binding pro... 84.0 8e-15
gi|320534129|ref|ZP_08034669.1| toxin-antitoxin system, antitoxi... 83.2 1e-14
gi|343523133|ref|ZP_08760096.1| DNA binding domain protein, exci... 83.2 1e-14
gi|291445855|ref|ZP_06585245.1| excisionase/Xis [Streptomyces ro... 80.5 9e-14
gi|239988863|ref|ZP_04709527.1| putative excisionase [Streptomyc... 80.1 1e-13
gi|281415246|ref|ZP_06246988.1| DNA-binding protein, excisionase... 74.7 4e-12
gi|239918544|ref|YP_002958102.1| DNA-binding protein, excisionas... 74.7 4e-12
gi|254773737|ref|ZP_05215253.1| excisionase [Mycobacterium avium... 73.6 8e-12
gi|269219104|ref|ZP_06162958.1| toxin-antitoxin system, antitoxi... 73.6 9e-12
gi|256372400|ref|YP_003110224.1| excisionase family DNA binding ... 73.6 1e-11
gi|256824359|ref|YP_003148319.1| excisionase family DNA-binding ... 73.2 1e-11
gi|296446430|ref|ZP_06888374.1| DNA binding domain protein, exci... 73.2 1e-11
gi|302532032|ref|ZP_07284374.1| excisionase [Streptomyces sp. AA... 73.2 1e-11
gi|289704755|ref|ZP_06501177.1| toxin-antitoxin system, antitoxi... 73.2 1e-11
gi|118616350|ref|YP_904682.1| excisionase [Mycobacterium ulceran... 73.2 1e-11
gi|152964018|ref|YP_001359802.1| DNA binding domain, excisionase... 72.8 2e-11
gi|269977636|ref|ZP_06184603.1| toxin-antitoxin system, antitoxi... 72.4 2e-11
gi|269957670|ref|YP_003327459.1| putative FliA/WhiG subfamily RN... 72.4 2e-11
gi|86740561|ref|YP_480961.1| excisionase/Xis, DNA-binding [Frank... 72.4 2e-11
gi|315504468|ref|YP_004083355.1| excisionase family DNA binding ... 72.0 3e-11
gi|227506262|ref|ZP_03936311.1| excisionase family DNA binding d... 72.0 3e-11
gi|308374972|ref|ZP_07442264.2| excisionase [Mycobacterium tuber... 72.0 3e-11
gi|302531838|ref|ZP_07284180.1| predicted protein [Streptomyces ... 72.0 3e-11
gi|308232554|ref|ZP_07416447.2| excisionase [Mycobacterium tuber... 72.0 3e-11
gi|15610886|ref|NP_218267.1| excisionase [Mycobacterium tubercul... 71.6 4e-11
gi|111020495|ref|YP_703467.1| excisionase [Rhodococcus jostii RH... 71.6 4e-11
gi|227834293|ref|YP_002836000.1| putative excisionase [Corynebac... 71.2 4e-11
gi|148360257|ref|YP_001251464.1| hypothetical protein LPC_2192 [... 70.9 6e-11
gi|269836083|ref|YP_003318311.1| DNA binding domain-containing p... 70.9 7e-11
gi|227874709|ref|ZP_03992867.1| excisionase domain protein [Mobi... 70.5 8e-11
gi|240169751|ref|ZP_04748410.1| putative excisionase [Mycobacter... 69.7 1e-10
gi|226363764|ref|YP_002781546.1| hypothetical protein ROP_43540 ... 69.3 2e-10
gi|302869908|ref|YP_003838545.1| excisionase family DNA binding ... 68.9 2e-10
gi|306818012|ref|ZP_07451746.1| type IIA topoisomerase (DNA gyra... 68.9 3e-10
gi|315501370|ref|YP_004080257.1| excisionase family DNA binding ... 68.2 4e-10
gi|291457028|ref|ZP_06596418.1| toxin-antitoxin system, antitoxi... 68.2 4e-10
gi|218666352|ref|YP_002426037.1| excisionase domain protein [Aci... 68.2 4e-10
gi|198282378|ref|YP_002218699.1| excisionase family DNA-binding ... 68.2 4e-10
gi|124005075|ref|ZP_01689917.1| excisionase domain protein [Micr... 67.8 5e-10
gi|172037602|ref|YP_001804103.1| hypothetical protein cce_2689 [... 67.0 8e-10
>gi|15609447|ref|NP_216826.1| excisionase [Mycobacterium tuberculosis H37Rv]
gi|15841814|ref|NP_336851.1| excisionase, putative [Mycobacterium tuberculosis CDC1551]
gi|31793493|ref|NP_855986.1| excisionase [Mycobacterium bovis AF2122/97]
75 more sequence titles
Length=114
Score = 220 bits (560), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 113/114 (99%), Positives = 114/114 (100%), Gaps = 0/114 (0%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDD 60
+VAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDD
Sbjct 1 MVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDD 60
Query 61 VLAYREARRQRQYDALAESAMDIDADEDPEVICEQLREARRVVAARRRTERRRA 114
VLAYREARRQRQYDALAESAMDIDADEDPEVICEQLREARRVVAARRRTERRRA
Sbjct 61 VLAYREARRQRQYDALAESAMDIDADEDPEVICEQLREARRVVAARRRTERRRA 114
>gi|289553903|ref|ZP_06443113.1| excisionase [Mycobacterium tuberculosis KZN 605]
gi|298525795|ref|ZP_07013204.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
gi|289438535|gb|EFD21028.1| excisionase [Mycobacterium tuberculosis KZN 605]
gi|298495589|gb|EFI30883.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
gi|328458385|gb|AEB03808.1| excisionase [Mycobacterium tuberculosis KZN 4207]
gi|339295215|gb|AEJ47326.1| excisionase [Mycobacterium tuberculosis CCDC5079]
gi|339298835|gb|AEJ50945.1| excisionase [Mycobacterium tuberculosis CCDC5180]
Length=113
Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/113 (99%), Positives = 113/113 (100%), Gaps = 0/113 (0%)
Query 2 VAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDDV 61
+AALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDDV
Sbjct 1 MAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDDV 60
Query 62 LAYREARRQRQYDALAESAMDIDADEDPEVICEQLREARRVVAARRRTERRRA 114
LAYREARRQRQYDALAESAMDIDADEDPEVICEQLREARRVVAARRRTERRRA
Sbjct 61 LAYREARRQRQYDALAESAMDIDADEDPEVICEQLREARRVVAARRRTERRRA 113
>gi|269793693|ref|YP_003313148.1| excisionase family DNA-binding protein [Sanguibacter keddieii
DSM 10542]
gi|269095878|gb|ACZ20314.1| DNA-binding protein, excisionase family [Sanguibacter keddieii
DSM 10542]
Length=178
Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/108 (69%), Positives = 84/108 (78%), Gaps = 1/108 (0%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDD 60
VV AL AG+AVTIAP+S TLTTQQAADLLGVSRPTVVRLI SGEL AER G R +L+L D
Sbjct 64 VVDALTAGRAVTIAPRSTTLTTQQAADLLGVSRPTVVRLIDSGELPAERPGTRRQLLLRD 123
Query 61 VLAYREARRQRQYDALAESAMDIDADEDPEVICEQLREARRVVAARRR 108
VL YRE RRQ QYD LA ++++ID D+DP QLR+ R VA RRR
Sbjct 124 VLDYRERRRQHQYDVLAATSIEID-DDDPGEALAQLRDVRSTVARRRR 170
>gi|226364837|ref|YP_002782619.1| hypothetical protein ROP_54270 [Rhodococcus opacus B4]
gi|226243326|dbj|BAH53674.1| hypothetical protein [Rhodococcus opacus B4]
Length=266
Score = 123 bits (309), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 68/109 (63%), Positives = 84/109 (78%), Gaps = 2/109 (1%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDD 60
VV L AG+AVT+AP++ LTTQQAADLLGVSRPTV RLI GEL AE +G RHRL+L D
Sbjct 66 VVGELQAGRAVTVAPRATMLTTQQAADLLGVSRPTVRRLIDVGELLAE-VGTRHRLLLPD 124
Query 61 VLAYREARRQRQYDALAESAMDIDADEDPEVICEQLREARRVVAARRRT 109
VL Y++ RR RQY+ LA++ + ID ++DP V+ EQLR A + VA RRRT
Sbjct 125 VLEYQQ-RRARQYEILAQTVVRIDDEDDPAVVAEQLRAAHKAVAERRRT 172
>gi|8517283|gb|AAF76245.1| putative excisionase [Arthrobacter sp. TM1]
Length=174
Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 53/111 (48%), Positives = 78/111 (71%), Gaps = 2/111 (1%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDD 60
V A+ G A+TI P SMTLTTQQAA+LLGV+RPT+VRL+ +G++ E+ G R+ L+D
Sbjct 65 TVEAMRKGLAITITPSSMTLTTQQAAELLGVTRPTLVRLLDAGKIPFEKPGTHRRIKLED 124
Query 61 VLAYREARRQRQYDALAESAMDIDADEDPEVICEQLREARRVVAARRRTER 111
VLA++E R+ QY+AL ++ + DE+PE ++++AR V A RRR +
Sbjct 125 VLAFKEVRKAEQYEAL--DSLGVLDDENPEAAINRMKKARVVAAERRRQHK 173
>gi|296130825|ref|YP_003638075.1| DNA binding domain protein, excisionase family [Cellulomonas
flavigena DSM 20109]
gi|296022640|gb|ADG75876.1| DNA binding domain protein, excisionase family [Cellulomonas
flavigena DSM 20109]
Length=180
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/81 (65%), Positives = 63/81 (78%), Gaps = 0/81 (0%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDD 60
V +L AGKAVT+AP++ LTTQQAADLLGVSRPTVVRLI +G L +ER GNR R+ L D
Sbjct 65 VADSLAAGKAVTVAPEATLLTTQQAADLLGVSRPTVVRLIDAGSLPSERHGNRRRIRLGD 124
Query 61 VLAYREARRQRQYDALAESAM 81
+L+YRE RR QY LA +A+
Sbjct 125 LLSYREQRRAEQYAMLAATAV 145
>gi|260904670|ref|ZP_05912992.1| putative excisionase [Brevibacterium linens BL2]
Length=174
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/107 (45%), Positives = 73/107 (69%), Gaps = 0/107 (0%)
Query 2 VAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDDV 61
V A+ +G AVTI P S+T+TTQQAA+LLG++RPT+V+L+ G++ E+ R+ L DV
Sbjct 66 VDAMRSGMAVTITPNSLTMTTQQAAELLGITRPTLVKLLDEGKIPFEKPNTHRRVRLADV 125
Query 62 LAYREARRQRQYDALAESAMDIDADEDPEVICEQLREARRVVAARRR 108
LAY+E R+ Q+ A+AE + E E ++++AR++VA RRR
Sbjct 126 LAYKEQRKAEQHAAIAEMGGYDEGKEGREQALARMKKARKIVADRRR 172
>gi|38232871|ref|NP_938638.1| putative excisionase [Corynebacterium diphtheriae NCTC 13129]
gi|38199129|emb|CAE48753.1| Putative excisionase [Corynebacterium diphtheriae]
Length=170
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/111 (45%), Positives = 69/111 (63%), Gaps = 5/111 (4%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDD 60
V AL +GKAVTI P +TTQQAA+LLGVSRPTVV+LI+ G+L A ++ R+ L+D
Sbjct 63 TVEALASGKAVTIHPNDPLVTTQQAAELLGVSRPTVVKLIEDGKLEATKVTRHRRIKLED 122
Query 61 VLAYREARRQRQYDALAESAMDIDADEDPEVICEQLREARRVVAARRRTER 111
VL Y+E + Q D LA + D A + E + R+++A +R+ R
Sbjct 123 VLRYQERQTIEQLDFLASTTSDAPALTESEYVS-----VRKMLANKRKESR 168
>gi|227549095|ref|ZP_03979144.1| excisionase family DNA binding domain protein [Corynebacterium
lipophiloflavum DSM 44291]
gi|227078824|gb|EEI16787.1| excisionase family DNA binding domain protein [Corynebacterium
lipophiloflavum DSM 44291]
Length=175
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/107 (46%), Positives = 72/107 (68%), Gaps = 6/107 (5%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERI-GNRHRLV-L 58
+V+A+ GKA+T+AP LTTQ+AAD LG+SRPT+V+L+++G L ER+ G RHR + L
Sbjct 63 IVSAMRIGKAITVAPVDQMLTTQEAADFLGISRPTLVKLLETGRLPFERVAGGRHRRIRL 122
Query 59 DDVLAYREARRQRQYDAL----AESAMDIDADEDPEVICEQLREARR 101
DDV+ Y+E++R+ + L AE+A D + + LREARR
Sbjct 123 DDVIRYQESKRRESRETLASMTAEAAKQELYDFGVDSYADALREARR 169
>gi|329948013|ref|ZP_08294914.1| DNA binding domain, excisionase family [Actinomyces sp. oral
taxon 170 str. F0386]
gi|328523152|gb|EGF50253.1| DNA binding domain, excisionase family [Actinomyces sp. oral
taxon 170 str. F0386]
Length=163
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/104 (46%), Positives = 69/104 (67%), Gaps = 4/104 (3%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDD 60
VV A+ G AVT+APQ LTTQ+AAD+LG+SRPT+VR++++GE+ E++ RL L D
Sbjct 57 VVDAMRRGLAVTVAPQDQRLTTQEAADMLGISRPTLVRMLEAGEIPFEKVRRHRRLFLTD 116
Query 61 VLAYREARRQRQYDALAESAMDI----DADEDPEVICEQLREAR 100
VL +RE +R+ +AL++ D D DEDP + L++ R
Sbjct 117 VLEFRERQRRAANEALSDMVADAQAIGDYDEDPTEAHQVLKDLR 160
>gi|325066647|ref|ZP_08125320.1| excisionase/Xis, DNA-binding protein [Actinomyces oris K20]
Length=163
Score = 84.0 bits (206), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/104 (45%), Positives = 70/104 (68%), Gaps = 4/104 (3%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDD 60
VV A+ G AVT+APQ LTTQ+AAD+LG+SRPT+VR++++GE+ E++ RL L D
Sbjct 57 VVDAMRRGLAVTVAPQDQRLTTQEAADMLGISRPTLVRMLEAGEIPFEKVRRHRRLFLTD 116
Query 61 VLAYREARRQRQYDALAESAMDIDA----DEDPEVICEQLREAR 100
VL +RE +R+ +AL++ D A D+DP + + L++ R
Sbjct 117 VLEFRERQRRAANEALSDMVADAQAMGAYDDDPAEVRQVLKDLR 160
>gi|320534129|ref|ZP_08034669.1| toxin-antitoxin system, antitoxin component, MerR family [Actinomyces
sp. oral taxon 171 str. F0337]
gi|320133649|gb|EFW26057.1| toxin-antitoxin system, antitoxin component, MerR family [Actinomyces
sp. oral taxon 171 str. F0337]
Length=161
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/104 (45%), Positives = 70/104 (68%), Gaps = 4/104 (3%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDD 60
VV A+ G AVT+APQ LTTQ+AAD+LG+SRPT+VR++++GE+ E++ RL L D
Sbjct 55 VVDAMRRGLAVTVAPQDQRLTTQEAADMLGISRPTLVRMLEAGEIPFEKVRRHRRLFLTD 114
Query 61 VLAYREARRQRQYDALAESAMDIDA----DEDPEVICEQLREAR 100
VL +RE +R+ +AL++ D A D+DP + + L++ R
Sbjct 115 VLEFRERQRRAANEALSDMVADAQAMGAYDDDPAELRQVLKDLR 158
>gi|343523133|ref|ZP_08760096.1| DNA binding domain protein, excisionase family [Actinomyces sp.
oral taxon 175 str. F0384]
gi|343400583|gb|EGV13099.1| DNA binding domain protein, excisionase family [Actinomyces sp.
oral taxon 175 str. F0384]
Length=190
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/104 (45%), Positives = 70/104 (68%), Gaps = 4/104 (3%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDD 60
VV A+ G AVT+APQ LTTQ+AAD+LG+SRPT+VR++++GE+ E++ RL L D
Sbjct 84 VVDAMRRGLAVTVAPQDQRLTTQEAADMLGISRPTLVRMLEAGEIPFEKVRRHRRLFLTD 143
Query 61 VLAYREARRQRQYDALAESAMDIDA----DEDPEVICEQLREAR 100
VL +RE +R+ +AL++ D A D+DP + + L++ R
Sbjct 144 VLEFRERQRRAANEALSDMVADAQAMGAYDDDPAELRQVLKDLR 187
>gi|291445855|ref|ZP_06585245.1| excisionase/Xis [Streptomyces roseosporus NRRL 15998]
gi|291348802|gb|EFE75706.1| excisionase/Xis [Streptomyces roseosporus NRRL 15998]
Length=174
Score = 80.5 bits (197), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 43/78 (56%), Positives = 54/78 (70%), Gaps = 0/78 (0%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDD 60
VV AL GKAVT+AP + TLTTQ+AADLLGVSRPT V+++ G L R G R++L D
Sbjct 84 VVHALAEGKAVTVAPVNTTLTTQEAADLLGVSRPTFVKILDEGGLPFNRPGRHRRVLLAD 143
Query 61 VLAYREARRQRQYDALAE 78
VL Y+E RR ++ L E
Sbjct 144 VLDYKEKRRTQRRRGLDE 161
>gi|239988863|ref|ZP_04709527.1| putative excisionase [Streptomyces roseosporus NRRL 11379]
Length=148
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/78 (56%), Positives = 54/78 (70%), Gaps = 0/78 (0%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDD 60
VV AL GKAVT+AP + TLTTQ+AADLLGVSRPT V+++ G L R G R++L D
Sbjct 58 VVHALAEGKAVTVAPVNTTLTTQEAADLLGVSRPTFVKILDEGGLPFNRPGRHRRVLLAD 117
Query 61 VLAYREARRQRQYDALAE 78
VL Y+E RR ++ L E
Sbjct 118 VLDYKEKRRTQRRRGLDE 135
>gi|281415246|ref|ZP_06246988.1| DNA-binding protein, excisionase family [Micrococcus luteus NCTC
2665]
Length=160
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/106 (46%), Positives = 65/106 (62%), Gaps = 6/106 (5%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAER-IGNRHRLV-L 58
VV A+ GKA+T+AP LTTQ+AA+ LG+SRPT+VRL++ G L ER G RHR + L
Sbjct 47 VVEAMRVGKAITVAPVDQLLTTQEAANFLGISRPTLVRLLEEGALPYERTTGGRHRRIRL 106
Query 59 DDVLAY----REARRQRQYDALAESAMDIDADEDPEVICEQLREAR 100
DV++Y R RR D + E++ D+ E E LR+AR
Sbjct 107 QDVVSYQQRKRGERRASLSDLVGEASPAGLYDQKAESYREALRQAR 152
>gi|239918544|ref|YP_002958102.1| DNA-binding protein, excisionase family [Micrococcus luteus NCTC
2665]
gi|239839751|gb|ACS31548.1| DNA-binding protein, excisionase family [Micrococcus luteus NCTC
2665]
Length=170
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/106 (46%), Positives = 65/106 (62%), Gaps = 6/106 (5%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAER-IGNRHRLV-L 58
VV A+ GKA+T+AP LTTQ+AA+ LG+SRPT+VRL++ G L ER G RHR + L
Sbjct 57 VVEAMRVGKAITVAPVDQLLTTQEAANFLGISRPTLVRLLEEGALPYERTTGGRHRRIRL 116
Query 59 DDVLAY----REARRQRQYDALAESAMDIDADEDPEVICEQLREAR 100
DV++Y R RR D + E++ D+ E E LR+AR
Sbjct 117 QDVVSYQQRKRGERRASLSDLVGEASPAGLYDQKAESYREALRQAR 162
>gi|254773737|ref|ZP_05215253.1| excisionase [Mycobacterium avium subsp. avium ATCC 25291]
Length=167
Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/99 (47%), Positives = 66/99 (67%), Gaps = 2/99 (2%)
Query 4 ALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGN-RHRLVLDDVL 62
AL G++++I + ++TQQAA++LG+SRPTVVRLI++GEL A G R +L L DVL
Sbjct 68 ALSHGQSISILTRDQEISTQQAAEILGLSRPTVVRLIENGELRAHVPGAIRRKLRLADVL 127
Query 63 AYREARRQRQYDALAESAMDIDADEDPEVICEQLREARR 101
AYRE R+ + ES+ + AD D + + E L EA+R
Sbjct 128 AYREELHARRNRFITESSAEF-ADADADEVAELLAEAKR 165
>gi|269219104|ref|ZP_06162958.1| toxin-antitoxin system, antitoxin component, MerR family [Actinomyces
sp. oral taxon 848 str. F0332]
gi|269211251|gb|EEZ77591.1| toxin-antitoxin system, antitoxin component, MerR family [Actinomyces
sp. oral taxon 848 str. F0332]
Length=177
Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/104 (43%), Positives = 63/104 (61%), Gaps = 4/104 (3%)
Query 2 VAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDDV 61
V A+ G AV++ PQ L+TQQAADLLGVSRPT++R++ GE+ R +L L DV
Sbjct 65 VEAMCQGMAVSVVPQHTMLSTQQAADLLGVSRPTLIRILDDGEIRFFRKRRHRQLCLTDV 124
Query 62 LAYREARRQRQYDALAESAMDI----DADEDPEVICEQLREARR 101
L Y++ +R+ +AL++ D D D DPE + +E RR
Sbjct 125 LEYQQRQRRVADEALSDIVADAQVFSDYDVDPEEYLKAAKEVRR 168
>gi|256372400|ref|YP_003110224.1| excisionase family DNA binding domain-containing protein [Acidimicrobium
ferrooxidans DSM 10331]
gi|256008984|gb|ACU54551.1| DNA binding domain protein, excisionase family [Acidimicrobium
ferrooxidans DSM 10331]
Length=184
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/112 (43%), Positives = 66/112 (59%), Gaps = 6/112 (5%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLV--- 57
VV + GKA IAPQ + LTTQ+AAD LG+SRPT+VRL++ G + E+ NRHR +
Sbjct 71 VVEVMRQGKAALIAPQGLLLTTQEAADFLGISRPTLVRLLEEGAIPFEK-PNRHRRIRLE 129
Query 58 -LDDVLAYREARRQRQYDALAESAMDIDADEDPE-VICEQLREARRVVAARR 107
L D R R+ D L E A ++ E+ E + LREARR +A ++
Sbjct 130 HLVDFQHRRSTDRRAVLDQLTEQASELGLYEETEATYAKALREARRSLARKK 181
>gi|256824359|ref|YP_003148319.1| excisionase family DNA-binding protein [Kytococcus sedentarius
DSM 20547]
gi|256687752|gb|ACV05554.1| DNA-binding protein, excisionase family [Kytococcus sedentarius
DSM 20547]
Length=157
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/87 (45%), Positives = 61/87 (71%), Gaps = 2/87 (2%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLV-LD 59
V AL G VT+AP++ LTTQ+AAD LG+SRPT+VR+++ GE+ E+ G RHR V L
Sbjct 58 VAEALDKGMGVTVAPKNARLTTQEAADFLGISRPTLVRMLERGEIPMEKPG-RHRFVRLA 116
Query 60 DVLAYREARRQRQYDALAESAMDIDAD 86
D++ Y++ +R ++ +AL A++ + D
Sbjct 117 DLVDYQQHQRNQRREALERMALESERD 143
>gi|296446430|ref|ZP_06888374.1| DNA binding domain protein, excisionase family [Methylosinus
trichosporium OB3b]
gi|296256065|gb|EFH03148.1| DNA binding domain protein, excisionase family [Methylosinus
trichosporium OB3b]
Length=150
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/74 (53%), Positives = 51/74 (69%), Gaps = 0/74 (0%)
Query 7 AGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDDVLAYRE 66
AGKAV++ P +TTQQAA+LL VSRP V+ LI+ G L A +GN+ RL L +VLAY+
Sbjct 68 AGKAVSLIPLEAEITTQQAAELLNVSRPFVIGLIEKGSLPARMVGNQRRLPLQEVLAYKA 127
Query 67 ARRQRQYDALAESA 80
R + +ALAE A
Sbjct 128 ENRASRREALAELA 141
>gi|302532032|ref|ZP_07284374.1| excisionase [Streptomyces sp. AA4]
gi|302440927|gb|EFL12743.1| excisionase [Streptomyces sp. AA4]
Length=132
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/78 (52%), Positives = 53/78 (68%), Gaps = 0/78 (0%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDD 60
VV A+ AG+AVT++ LTT +AA +LG+SRPT++R I +GE+ A ++G RL D
Sbjct 48 VVQAVAAGRAVTVSSLPEELTTTEAAKILGISRPTLMRKIDAGEIPARKVGTHTRLRTRD 107
Query 61 VLAYREARRQRQYDALAE 78
VLA R ARRQRQ A E
Sbjct 108 VLAERSARRQRQLAAFDE 125
>gi|289704755|ref|ZP_06501177.1| toxin-antitoxin system, antitoxin component, MerR family [Micrococcus
luteus SK58]
gi|289558515|gb|EFD51784.1| toxin-antitoxin system, antitoxin component, MerR family [Micrococcus
luteus SK58]
Length=170
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/82 (52%), Positives = 58/82 (71%), Gaps = 2/82 (2%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAE-RIGNRH-RLVL 58
VV A+ GKA+T+AP LTTQ+AA+ LG+SRPT+V+L++SG+L E G RH RL L
Sbjct 57 VVEAMRVGKAITVAPVDQMLTTQEAANFLGISRPTLVKLLESGQLPYELPSGGRHRRLRL 116
Query 59 DDVLAYREARRQRQYDALAESA 80
DV+ Y+E +R+ + AL E A
Sbjct 117 QDVVEYQERKRRDRRAALQELA 138
>gi|118616350|ref|YP_904682.1| excisionase [Mycobacterium ulcerans Agy99]
gi|118568460|gb|ABL03211.1| excisionase [Mycobacterium ulcerans Agy99]
Length=167
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/99 (46%), Positives = 67/99 (68%), Gaps = 2/99 (2%)
Query 4 ALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGN-RHRLVLDDVL 62
AL G++++I + ++TQQAA++LG+SRPTVVRLI++GEL A G R +L L DVL
Sbjct 68 ALSHGQSISILTRDQEISTQQAAEILGLSRPTVVRLIQNGELDAHVPGAVRRKLRLADVL 127
Query 63 AYREARRQRQYDALAESAMDIDADEDPEVICEQLREARR 101
AYRE R+ ++ES+ + AD + + + E L EA+R
Sbjct 128 AYREELHARRNRFISESSAEF-ADANADEVAELLAEAKR 165
>gi|152964018|ref|YP_001359802.1| DNA binding domain, excisionase family [Kineococcus radiotolerans
SRS30216]
gi|151358535|gb|ABS01538.1| DNA binding domain, excisionase family [Kineococcus radiotolerans
SRS30216]
Length=136
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/76 (54%), Positives = 52/76 (69%), Gaps = 2/76 (2%)
Query 2 VAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDDV 61
V AL G+AVT+ P LTTQ+AA++LGVSRPT+VRL++SG L + G R+ L+DV
Sbjct 59 VLALSHGEAVTLTPHEALLTTQEAAEVLGVSRPTLVRLLESGALPFTKPGTHRRVRLEDV 118
Query 62 LAYREARRQRQYDALA 77
LAY E RQR A A
Sbjct 119 LAYAE--RQRHLPAPA 132
>gi|269977636|ref|ZP_06184603.1| toxin-antitoxin system, antitoxin component, MerR family [Mobiluncus
mulieris 28-1]
gi|307701308|ref|ZP_07638329.1| toxin-antitoxin system, antitoxin component, MerR family [Mobiluncus
mulieris FB024-16]
gi|269934239|gb|EEZ90806.1| toxin-antitoxin system, antitoxin component, MerR family [Mobiluncus
mulieris 28-1]
gi|307613469|gb|EFN92717.1| toxin-antitoxin system, antitoxin component, MerR family [Mobiluncus
mulieris FB024-16]
Length=168
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/109 (42%), Positives = 69/109 (64%), Gaps = 8/109 (7%)
Query 2 VAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGN-RH-RLVLD 59
V +L +G+AV++ P S +LTTQQAADLLG+SRPT ++++ G++ ER+ + RH R++L
Sbjct 62 VKSLQSGQAVSVIPMSTSLTTQQAADLLGISRPTFIKILNRGDIKYERLSDSRHRRVLLS 121
Query 60 DVLAY-REARRQRQYDALAESAMDIDADEDPEVICEQLREARRVVAARR 107
DVL Y R + QR+ E D+ A+ PE + R+V+A R
Sbjct 122 DVLDYARRCQVQRR-----EILSDMVAEASPEEFDTTAEQVRQVLARER 165
>gi|269957670|ref|YP_003327459.1| putative FliA/WhiG subfamily RNA polymerase sigma 28 subunit
[Xylanimonas cellulosilytica DSM 15894]
gi|269306351|gb|ACZ31901.1| putative RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily
[Xylanimonas cellulosilytica DSM 15894]
Length=167
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/102 (44%), Positives = 68/102 (67%), Gaps = 2/102 (1%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGN-RHRLVLD 59
VV AL+ G++++I + ++TQQAA++LGVSRPTVVRLI+ GEL A G R +L L
Sbjct 65 VVEALNRGQSISILTRDQEISTQQAAEILGVSRPTVVRLIEDGELPARVPGAVRRKLRLA 124
Query 60 DVLAYREARRQRQYDALAESAMDIDADEDPEVICEQLREARR 101
DV+AYR+ R+ +++++ D DP+ + + L +ARR
Sbjct 125 DVMAYRDELHARRNQFISDTSAKDDG-ADPDEVSDLLDQARR 165
>gi|86740561|ref|YP_480961.1| excisionase/Xis, DNA-binding [Frankia sp. CcI3]
gi|86567423|gb|ABD11232.1| Excisionase/Xis, DNA-binding [Frankia sp. CcI3]
Length=174
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/113 (47%), Positives = 75/113 (67%), Gaps = 8/113 (7%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLV-LD 59
V AA+ AG AVT+AP +T++TQ+AADLL +SR T+VRL++SG + E+ +RHR V LD
Sbjct 66 VAAAMKAGLAVTVAPHHLTMSTQEAADLLRISRTTLVRLLESGAIPFEK-PSRHRKVRLD 124
Query 60 DVLAYREARRQRQYDALAESAMDIDADEDP--EVICEQLREARRVVAARRRTE 110
D+L YR RRQR LA + M D + +V ++ R A + AAR++TE
Sbjct 125 DLLEYR--RRQRHAADLAFADMVADTERLGLYDVSPDETRAALK--AARKKTE 173
>gi|315504468|ref|YP_004083355.1| excisionase family DNA binding domain-containing protein [Micromonospora
sp. L5]
gi|315411087|gb|ADU09204.1| DNA binding domain protein, excisionase family [Micromonospora
sp. L5]
Length=156
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/70 (53%), Positives = 48/70 (69%), Gaps = 0/70 (0%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDD 60
VV AL G A++IAP + LTTQ+AADLL +SRPT+VRL+ GE+ G R++L D
Sbjct 58 VVTALSEGLAISIAPHNTMLTTQEAADLLNISRPTLVRLLSEGEMPYTMRGRHRRVMLRD 117
Query 61 VLAYREARRQ 70
VL Y+E RQ
Sbjct 118 VLDYQERTRQ 127
>gi|227506262|ref|ZP_03936311.1| excisionase family DNA binding domain protein [Corynebacterium
striatum ATCC 6940]
gi|227197144|gb|EEI77192.1| excisionase family DNA binding domain protein [Corynebacterium
striatum ATCC 6940]
Length=156
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/118 (43%), Positives = 69/118 (59%), Gaps = 11/118 (9%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAER-IGNRHRLV-L 58
VV A+ GK +T+AP LTTQ+AAD LG+SRPT+V+ ++ G +A ER G RHR V L
Sbjct 38 VVHAMRQGKGITVAPVDQLLTTQEAADFLGISRPTLVKKLEDGAIAFERPSGGRHRRVRL 97
Query 59 DDVLAYREARRQRQYDALAE--------SAMDIDADEDPEVICEQLREARRVVAARRR 108
D+L YR+ +R + AL E A D+D D I + L++ RR A + R
Sbjct 98 VDLLQYRDRQRTERRKALRELIAEAQAAGAYDVDT-VDASDIAQVLKDVRREAAEKDR 154
>gi|308374972|ref|ZP_07442264.2| excisionase [Mycobacterium tuberculosis SUMu007]
gi|308376215|ref|ZP_07438058.2| excisionase [Mycobacterium tuberculosis SUMu008]
gi|308347893|gb|EFP36744.1| excisionase [Mycobacterium tuberculosis SUMu007]
gi|308351761|gb|EFP40612.1| excisionase [Mycobacterium tuberculosis SUMu008]
Length=108
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/82 (44%), Positives = 54/82 (66%), Gaps = 0/82 (0%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDD 60
VV AL GK +++ P+ + LTTQ+AADLL +SRPT+VRL++ G + E+ G R+ LD
Sbjct 14 VVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRLLEDGRIPFEKPGRHRRVSLDA 73
Query 61 VLAYREARRQRQYDALAESAMD 82
+L Y++ R + AL E + D
Sbjct 74 LLEYQQETRSNRRAALGELSRD 95
>gi|302531838|ref|ZP_07284180.1| predicted protein [Streptomyces sp. AA4]
gi|302440733|gb|EFL12549.1| predicted protein [Streptomyces sp. AA4]
Length=145
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/78 (52%), Positives = 53/78 (68%), Gaps = 0/78 (0%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDD 60
VV A+ AG+AVT++ LTT +AA +LGVSRPT++R I +GE+ A ++G RL D
Sbjct 61 VVQAVAAGRAVTVSSLPEELTTTEAAKILGVSRPTLMRKIAAGEIPARKVGTHTRLRTRD 120
Query 61 VLAYREARRQRQYDALAE 78
VLA + ARRQRQ A E
Sbjct 121 VLAEQRARRQRQLAAFEE 138
>gi|308232554|ref|ZP_07416447.2| excisionase [Mycobacterium tuberculosis SUMu001]
gi|308371441|ref|ZP_07424986.2| excisionase [Mycobacterium tuberculosis SUMu003]
gi|308380793|ref|ZP_07491105.2| excisionase [Mycobacterium tuberculosis SUMu011]
gi|308213632|gb|EFO73031.1| excisionase [Mycobacterium tuberculosis SUMu001]
gi|308328770|gb|EFP17621.1| excisionase [Mycobacterium tuberculosis SUMu003]
gi|308360443|gb|EFP49294.1| excisionase [Mycobacterium tuberculosis SUMu011]
gi|339296559|gb|AEJ48670.1| excisionase [Mycobacterium tuberculosis CCDC5079]
gi|339300158|gb|AEJ52268.1| excisionase [Mycobacterium tuberculosis CCDC5180]
Length=116
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/82 (44%), Positives = 54/82 (66%), Gaps = 0/82 (0%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDD 60
VV AL GK +++ P+ + LTTQ+AADLL +SRPT+VRL++ G + E+ G R+ LD
Sbjct 22 VVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRLLEDGRIPFEKPGRHRRVSLDA 81
Query 61 VLAYREARRQRQYDALAESAMD 82
+L Y++ R + AL E + D
Sbjct 82 LLEYQQETRSNRRAALGELSRD 103
>gi|15610886|ref|NP_218267.1| excisionase [Mycobacterium tuberculosis H37Rv]
gi|15843370|ref|NP_338407.1| excisionase, putative [Mycobacterium tuberculosis CDC1551]
gi|31794920|ref|NP_857413.1| putative excisionase [Mycobacterium bovis AF2122/97]
65 more sequence titles
Length=130
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/82 (44%), Positives = 54/82 (66%), Gaps = 0/82 (0%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDD 60
VV AL GK +++ P+ + LTTQ+AADLL +SRPT+VRL++ G + E+ G R+ LD
Sbjct 36 VVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRLLEDGRIPFEKPGRHRRVSLDA 95
Query 61 VLAYREARRQRQYDALAESAMD 82
+L Y++ R + AL E + D
Sbjct 96 LLEYQQETRSNRRAALGELSRD 117
>gi|111020495|ref|YP_703467.1| excisionase [Rhodococcus jostii RHA1]
gi|110820025|gb|ABG95309.1| possible excisionase [Rhodococcus jostii RHA1]
Length=152
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/85 (45%), Positives = 55/85 (65%), Gaps = 0/85 (0%)
Query 2 VAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDDV 61
VAAL G+AVT+ P LTTQ+AADLLG++RPT+VRL+++G++ G R+ L DV
Sbjct 56 VAALDRGQAVTVEPHRTMLTTQEAADLLGITRPTLVRLLEAGKIPYTSPGRHRRVELADV 115
Query 62 LAYREARRQRQYDALAESAMDIDAD 86
LA+++ R R+ E A + D
Sbjct 116 LAFQQGERARRGQVFEEMAHEEPPD 140
>gi|227834293|ref|YP_002836000.1| putative excisionase [Corynebacterium aurimucosum ATCC 700975]
gi|262183023|ref|ZP_06042444.1| putative excisionase [Corynebacterium aurimucosum ATCC 700975]
gi|227455309|gb|ACP34062.1| putative excisionase [Corynebacterium aurimucosum ATCC 700975]
Length=178
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/118 (43%), Positives = 68/118 (58%), Gaps = 11/118 (9%)
Query 2 VAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERI-GNRHRLV-LD 59
V A+ GKA+T+AP LTTQ+AAD LG+SRPT+V+ ++ G +A ER G +HR V L
Sbjct 59 VRAMQQGKAITVAPVDQLLTTQEAADFLGISRPTLVKKLEDGSIAFERTSGGKHRRVRLV 118
Query 60 DVLAYREARRQRQYDALAE--------SAMDIDADE-DPEVICEQLREARRVVAARRR 108
DVL YR+ +R + AL E A D+ D E I L+ AR+ A + R
Sbjct 119 DVLQYRDEQRAERRKALRELVSEAQRAGAYSAGTDDADAEDIALSLKGARKEAAEKAR 176
>gi|148360257|ref|YP_001251464.1| hypothetical protein LPC_2192 [Legionella pneumophila str. Corby]
gi|296106699|ref|YP_003618399.1| hypothetical protein lpa_01673 [Legionella pneumophila 2300/99
Alcoy]
gi|148282030|gb|ABQ56118.1| hypothetical protein LPC_2192 [Legionella pneumophila str. Corby]
gi|295648600|gb|ADG24447.1| hypothetical protein lpa_01673 [Legionella pneumophila 2300/99
Alcoy]
Length=148
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/71 (46%), Positives = 49/71 (70%), Gaps = 0/71 (0%)
Query 8 GKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDDVLAYREA 67
G ++T+ PQ LTTQ+AAD+L VSRP V+L++ G++ E+IGNR R++ DV+ ++E
Sbjct 66 GNSLTLIPQHAHLTTQEAADMLNVSRPYFVKLLEEGKIPFEKIGNRRRVLARDVMEFKEQ 125
Query 68 RRQRQYDALAE 78
R + AL E
Sbjct 126 ERVKSEQALQE 136
>gi|269836083|ref|YP_003318311.1| DNA binding domain-containing protein, excisionase family [Sphaerobacter
thermophilus DSM 20745]
gi|269785346|gb|ACZ37489.1| DNA binding domain protein, excisionase family [Sphaerobacter
thermophilus DSM 20745]
Length=149
Score = 70.9 bits (172), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 50/75 (67%), Gaps = 0/75 (0%)
Query 2 VAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDDV 61
V AL G AVTI P LTTQQAA++L VSRP ++RL++ GE+ +G R+ DV
Sbjct 61 VHALAEGAAVTIVPIDKELTTQQAANILNVSRPYLIRLLERGEIPYHTVGRHRRIRFGDV 120
Query 62 LAYREARRQRQYDAL 76
LAYR+ R +R+ +A+
Sbjct 121 LAYRQKRYERRKEAI 135
>gi|227874709|ref|ZP_03992867.1| excisionase domain protein [Mobiluncus mulieris ATCC 35243]
gi|227844706|gb|EEJ54857.1| excisionase domain protein [Mobiluncus mulieris ATCC 35243]
Length=195
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/81 (46%), Positives = 51/81 (63%), Gaps = 0/81 (0%)
Query 2 VAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDDV 61
+ AL G+A+++ P S LTTQQAAD LG+SRPT+VRL+ GE+ R R++L D+
Sbjct 71 IIALSEGRAISVTPLSTRLTTQQAADFLGISRPTLVRLLDKGEIPYSRPRRHRRVLLADL 130
Query 62 LAYREARRQRQYDALAESAMD 82
L Y E ++ R AL E D
Sbjct 131 LEYNERQQYRAAKALDEIMAD 151
>gi|240169751|ref|ZP_04748410.1| putative excisionase [Mycobacterium kansasii ATCC 12478]
Length=97
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 53/80 (67%), Gaps = 1/80 (1%)
Query 8 GKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDDVLAYREA 67
GK + + P M LTTQ+AAD+L +SRPT+V+L++ G + ++ G R+ LD VLAY++
Sbjct 4 GKGIQLVPHHMALTTQEAADILNISRPTLVKLLEEGRIPYDKPGRHRRIRLDAVLAYQQE 63
Query 68 RRQRQYDALAESAMDIDADE 87
R R+ AL E+ D ADE
Sbjct 64 TRARRKAALQEATRD-SADE 82
>gi|226363764|ref|YP_002781546.1| hypothetical protein ROP_43540 [Rhodococcus opacus B4]
gi|226242253|dbj|BAH52601.1| hypothetical protein [Rhodococcus opacus B4]
Length=148
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/79 (46%), Positives = 52/79 (66%), Gaps = 0/79 (0%)
Query 2 VAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDDV 61
V AL G+AVT+ P LTTQ+AA+LLG++RPT+VRL+++G++ G R+ L DV
Sbjct 52 VTALDRGQAVTVEPHRTVLTTQEAAELLGITRPTLVRLLEAGKIPYSSPGRHRRVELADV 111
Query 62 LAYREARRQRQYDALAESA 80
LA+R+ R R+ E A
Sbjct 112 LAFRQQERARRGQVFEEMA 130
>gi|302869908|ref|YP_003838545.1| excisionase family DNA binding domain-containing protein [Micromonospora
aurantiaca ATCC 27029]
gi|302572767|gb|ADL48969.1| DNA binding domain protein, excisionase family [Micromonospora
aurantiaca ATCC 27029]
Length=155
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/79 (47%), Positives = 54/79 (69%), Gaps = 3/79 (3%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDD 60
+ A L G V I+ S LTT +AA LLG+SRPT+VRL+++G +A+ R+G+ RL L D
Sbjct 64 ISAMLARGDGVAISAISRELTTTEAAKLLGMSRPTLVRLLENGSIASHRVGSHRRLFLRD 123
Query 61 VLAYRE---ARRQRQYDAL 76
VLA+R+ R++ Y+AL
Sbjct 124 VLAFRQRQMEERRKSYEAL 142
>gi|306818012|ref|ZP_07451746.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV),
A subunit [Mobiluncus mulieris ATCC 35239]
gi|304649214|gb|EFM46505.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV),
A subunit [Mobiluncus mulieris ATCC 35239]
Length=195
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/81 (45%), Positives = 51/81 (63%), Gaps = 0/81 (0%)
Query 2 VAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDDV 61
+ AL G+A+++ P S LTTQQAAD LG+SRPT+VRL+ GE+ R +++L D+
Sbjct 71 IIALSEGRAISVTPLSTRLTTQQAADFLGISRPTLVRLLDEGEIPYSRPRRHRQVLLADL 130
Query 62 LAYREARRQRQYDALAESAMD 82
L Y E ++ R AL E D
Sbjct 131 LEYNERQQYRAAKALDEIMAD 151
>gi|315501370|ref|YP_004080257.1| excisionase family DNA binding domain-containing protein [Micromonospora
sp. L5]
gi|315407989|gb|ADU06106.1| DNA binding domain protein, excisionase family [Micromonospora
sp. L5]
Length=155
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/79 (47%), Positives = 53/79 (68%), Gaps = 3/79 (3%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDD 60
+ A L G V I+ S LTT +AA LLG+SRPT+VRL++ G +A+ R+G+ RL L D
Sbjct 64 ISAMLARGDGVAISAISRELTTTEAAKLLGMSRPTLVRLLEDGSIASHRVGSHRRLFLRD 123
Query 61 VLAYRE---ARRQRQYDAL 76
VLA+R+ R++ Y+AL
Sbjct 124 VLAFRQRQMEERRKSYEAL 142
>gi|291457028|ref|ZP_06596418.1| toxin-antitoxin system, antitoxin component, MerR family [Bifidobacterium
breve DSM 20213]
gi|291380863|gb|EFE88381.1| toxin-antitoxin system, antitoxin component, MerR family [Bifidobacterium
breve DSM 20213]
Length=174
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/92 (41%), Positives = 55/92 (60%), Gaps = 10/92 (10%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDD 60
V L GKA+ +AP LTTQ AAD LG+SRPT+V+L++ G++ R+G R++L D
Sbjct 80 VADQLSRGKAIFVAPYDTKLTTQDAADYLGISRPTLVKLLEQGDIPFTRVGRHRRVMLSD 139
Query 61 VLAY---REARRQRQYDALAESAMDIDADEDP 89
+ Y + + + +DA+A ADEDP
Sbjct 140 LQHYAVTQHDKNMQIFDAIA-------ADEDP 164
>gi|218666352|ref|YP_002426037.1| excisionase domain protein [Acidithiobacillus ferrooxidans ATCC
23270]
gi|218518565|gb|ACK79151.1| excisionase domain protein [Acidithiobacillus ferrooxidans ATCC
23270]
gi|339834876|gb|EGQ62604.1| excisionase domain protein [Acidithiobacillus sp. GGI-221]
Length=154
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/83 (46%), Positives = 52/83 (63%), Gaps = 3/83 (3%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDD 60
V+ + G AV+I P LTTQ AAD+L VSRP +V+L++ GE+ +IG R+ D
Sbjct 64 VLTEIGEGNAVSIIPIHAELTTQDAADVLNVSRPFLVQLLERGEIPFHKIGTHRRVRYQD 123
Query 61 VLAYRE---ARRQRQYDALAESA 80
V+AY+E A R + DALAE A
Sbjct 124 VIAYKERIDAERSKALDALAEQA 146
>gi|198282378|ref|YP_002218699.1| excisionase family DNA-binding domain-containing protein [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|198246899|gb|ACH82492.1| DNA binding domain protein, excisionase family [Acidithiobacillus
ferrooxidans ATCC 53993]
Length=154
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/83 (46%), Positives = 52/83 (63%), Gaps = 3/83 (3%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDD 60
V+ + G AV+I P LTTQ AAD+L VSRP +V+L++ GE+ +IG R+ D
Sbjct 64 VLTEIGEGNAVSIIPIHAELTTQDAADVLNVSRPFLVQLLERGEIPFHKIGTHRRVRYQD 123
Query 61 VLAYRE---ARRQRQYDALAESA 80
V+AY+E A R + DALAE A
Sbjct 124 VIAYKERIDAERSKALDALAEQA 146
>gi|124005075|ref|ZP_01689917.1| excisionase domain protein [Microscilla marina ATCC 23134]
gi|123989327|gb|EAY28888.1| excisionase domain protein [Microscilla marina ATCC 23134]
Length=151
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/72 (42%), Positives = 50/72 (70%), Gaps = 0/72 (0%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDD 60
V+ A+ GKAV+IAP +TTQ AA++LG SRP +V+L+++GE+ ++G R+ ++D
Sbjct 61 VLKAMGEGKAVSIAPVEAEVTTQSAAEILGCSRPHLVKLLETGEIKFTKVGRHRRIKIED 120
Query 61 VLAYREARRQRQ 72
V+ Y+ +Q Q
Sbjct 121 VMEYKTKMKQDQ 132
>gi|172037602|ref|YP_001804103.1| hypothetical protein cce_2689 [Cyanothece sp. ATCC 51142]
gi|171699056|gb|ACB52037.1| unknown [Cyanothece sp. ATCC 51142]
Length=178
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/87 (35%), Positives = 54/87 (63%), Gaps = 3/87 (3%)
Query 1 VVAALHAGKAVTIAPQSMTLTTQQAADLLGVSRPTVVRLIKSGELAAERIGNRHRLVLDD 60
++ + G A+T+ P LTTQ+AAD+L VSRP V++L++SGE+ ++G R+ +D
Sbjct 88 ILTQMAQGNAITLIPIHAELTTQEAADILNVSRPYVIKLLESGEIPFTKVGKHRRIRFED 147
Query 61 VLAYREA---RRQRQYDALAESAMDID 84
++ Y++ +R D L E A +++
Sbjct 148 IMNYKDNIDRKRSEVLDKLVEQAQELN 174
Lambda K H
0.320 0.131 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131546402790
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40