BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2311
Length=174
Score E
Sequences producing significant alignments: (Bits) Value
gi|167969858|ref|ZP_02552135.1| hypothetical protein MtubH3_1826... 354 3e-96
gi|323719219|gb|EGB28364.1| hypothetical protein TMMG_01599 [Myc... 353 5e-96
gi|339295216|gb|AEJ47327.1| hypothetical protein CCDC5079_2137 [... 352 1e-95
gi|15609448|ref|NP_216827.1| hypothetical protein Rv2311 [Mycoba... 352 1e-95
gi|32470510|ref|NP_863500.1| putative relaxase [Mycobacterium av... 152 2e-35
gi|183983583|ref|YP_001851874.1| ATP-dependent exoDNAse (exonucl... 149 2e-34
gi|296165867|ref|ZP_06848350.1| ATP-dependent exoDNAse (exonucle... 140 9e-32
gi|296164391|ref|ZP_06846967.1| ATP-dependent exoDNAse (exonucle... 134 5e-30
gi|145226210|ref|YP_001136860.1| exonuclease V subunit alpha [My... 110 6e-23
gi|145226175|ref|YP_001136826.1| exonuclease V subunit alpha [My... 107 7e-22
gi|119854906|ref|YP_935511.1| exonuclease V subunit alpha [Mycob... 105 2e-21
gi|315441605|ref|YP_004074482.1| TrwC relaxase [Mycobacterium sp... 105 2e-21
gi|296165423|ref|ZP_06847961.1| possible exonuclease V subunit a... 96.7 1e-18
gi|240170346|ref|ZP_04749005.1| putative relaxase [Mycobacterium... 95.9 2e-18
gi|169786824|ref|YP_001700713.1| TraA/ATP-dependent exoDNAse/rel... 95.5 2e-18
gi|184152627|ref|YP_001840830.1| ATP-dependent exoDNAse (exonucl... 95.5 3e-18
gi|269955652|ref|YP_003325441.1| TrwC relaxase [Xylanimonas cell... 69.3 2e-10
gi|269957122|ref|YP_003326911.1| TrwC relaxase [Xylanimonas cell... 68.6 3e-10
gi|326331483|ref|ZP_08197773.1| transfer protein TraA [Nocardioi... 68.6 4e-10
gi|262118168|ref|YP_003275938.1| TrwC relaxase [Gordonia bronchi... 68.2 4e-10
gi|40445348|ref|NP_954808.1| TraA protein [Gordonia westfalica] ... 67.8 5e-10
gi|260907416|ref|ZP_05915738.1| conjugative relaxase domain prot... 66.6 1e-09
gi|300742451|ref|ZP_07072472.1| putative toprim domain protein [... 66.2 2e-09
gi|326330139|ref|ZP_08196450.1| transfer protein TraA [Nocardioi... 65.5 3e-09
gi|284989333|ref|YP_003407887.1| TrwC relaxase [Geodermatophilus... 65.1 4e-09
gi|283826934|ref|YP_003377696.1| TraA [Corynebacterium glutamicu... 64.7 5e-09
gi|17158096|ref|NP_478092.1| TraA protein [Corynebacterium gluta... 64.3 6e-09
gi|32455541|ref|NP_862296.1| transfer protein homolog TraA [Cory... 64.3 6e-09
gi|119715816|ref|YP_922781.1| DNA primase catalytic core [Nocard... 63.5 1e-08
gi|27764610|ref|NP_776232.1| hypothetical protein pGA2_p04 [Cory... 63.2 1e-08
gi|133757382|ref|YP_001096262.1| hypothetical protein pLEW279b_p... 63.2 1e-08
gi|32470500|ref|NP_863184.1| hypothetical protein pNG2_p09 [Cory... 63.2 2e-08
gi|332671637|ref|YP_004454645.1| conjugative relaxase domain-con... 62.8 2e-08
gi|23577999|ref|NP_702946.1| putative conjugal transfer protein ... 61.6 4e-08
gi|259506148|ref|ZP_05749050.1| conserved hypothetical protein [... 61.2 5e-08
gi|296164050|ref|ZP_06846673.1| exonuclease V subunit alpha [Myc... 61.2 5e-08
gi|295395619|ref|ZP_06805812.1| toprim domain protein [Brevibact... 60.8 6e-08
gi|108798401|ref|YP_638598.1| exonuclease V subunit alpha [Mycob... 60.8 7e-08
gi|333917553|ref|YP_004483503.1| relaxase [Amycolicicoccus subfl... 60.8 7e-08
gi|23577972|ref|NP_702920.1| putative conjugal transfer protein ... 59.7 2e-07
gi|259508598|ref|ZP_05751498.1| conserved hypothetical protein [... 59.7 2e-07
gi|300780558|ref|ZP_07090413.1| conserved hypothetical protein [... 59.3 2e-07
gi|225730232|ref|YP_002149549.2| putative conjugal transfer prot... 59.3 2e-07
gi|258652181|ref|YP_003201337.1| TrwC relaxase [Nakamurella mult... 59.3 2e-07
gi|215481759|ref|YP_002149617.2| putative conjugal transfer prot... 59.3 2e-07
gi|10956647|ref|NP_066783.1| TraA-like protein [Rhodococcus equi... 58.9 2e-07
gi|297718587|gb|ADI50202.1| putative conjugal transfer protein T... 58.9 2e-07
gi|296165985|ref|ZP_06848439.1| exonuclease V subunit alpha [Myc... 58.9 3e-07
gi|239916605|ref|YP_002956163.1| conjugative relaxase domain pro... 58.9 3e-07
gi|256824511|ref|YP_003148471.1| TrwC relaxase [Kytococcus seden... 58.5 3e-07
>gi|167969858|ref|ZP_02552135.1| hypothetical protein MtubH3_18269 [Mycobacterium tuberculosis
H37Ra]
gi|253798616|ref|YP_003031617.1| hypothetical protein TBMG_01668 [Mycobacterium tuberculosis KZN
1435]
gi|254232455|ref|ZP_04925782.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
32 more sequence titles
Length=198
Score = 354 bits (908), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 174/174 (100%), Positives = 174/174 (100%), Gaps = 0/174 (0%)
Query 1 VAPTGQAVDVAVREGAGDVGYSVERENLPADDPVRNGNRWRVIAVDTEHHRIAARRLGDG 60
VAPTGQAVDVAVREGAGDVGYSVERENLPADDPVRNGNRWRVIAVDTEHHRIAARRLGDG
Sbjct 25 VAPTGQAVDVAVREGAGDVGYSVERENLPADDPVRNGNRWRVIAVDTEHHRIAARRLGDG 84
Query 61 ARAAFSGDYLHEHITHGYAITVHASQGTTAHSTHAVLGDNTSRATLYVAMTPARESNTAY 120
ARAAFSGDYLHEHITHGYAITVHASQGTTAHSTHAVLGDNTSRATLYVAMTPARESNTAY
Sbjct 85 ARAAFSGDYLHEHITHGYAITVHASQGTTAHSTHAVLGDNTSRATLYVAMTPARESNTAY 144
Query 121 LCERTAGEGARVDLAGWDLWVSGKAEAMSDEKSASPVWCRVGARCDHRGKRSCW 174
LCERTAGEGARVDLAGWDLWVSGKAEAMSDEKSASPVWCRVGARCDHRGKRSCW
Sbjct 145 LCERTAGEGARVDLAGWDLWVSGKAEAMSDEKSASPVWCRVGARCDHRGKRSCW 198
>gi|323719219|gb|EGB28364.1| hypothetical protein TMMG_01599 [Mycobacterium tuberculosis CDC1551A]
Length=176
Score = 353 bits (906), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 174/174 (100%), Positives = 174/174 (100%), Gaps = 0/174 (0%)
Query 1 VAPTGQAVDVAVREGAGDVGYSVERENLPADDPVRNGNRWRVIAVDTEHHRIAARRLGDG 60
VAPTGQAVDVAVREGAGDVGYSVERENLPADDPVRNGNRWRVIAVDTEHHRIAARRLGDG
Sbjct 3 VAPTGQAVDVAVREGAGDVGYSVERENLPADDPVRNGNRWRVIAVDTEHHRIAARRLGDG 62
Query 61 ARAAFSGDYLHEHITHGYAITVHASQGTTAHSTHAVLGDNTSRATLYVAMTPARESNTAY 120
ARAAFSGDYLHEHITHGYAITVHASQGTTAHSTHAVLGDNTSRATLYVAMTPARESNTAY
Sbjct 63 ARAAFSGDYLHEHITHGYAITVHASQGTTAHSTHAVLGDNTSRATLYVAMTPARESNTAY 122
Query 121 LCERTAGEGARVDLAGWDLWVSGKAEAMSDEKSASPVWCRVGARCDHRGKRSCW 174
LCERTAGEGARVDLAGWDLWVSGKAEAMSDEKSASPVWCRVGARCDHRGKRSCW
Sbjct 123 LCERTAGEGARVDLAGWDLWVSGKAEAMSDEKSASPVWCRVGARCDHRGKRSCW 176
>gi|339295216|gb|AEJ47327.1| hypothetical protein CCDC5079_2137 [Mycobacterium tuberculosis
CCDC5079]
Length=198
Score = 352 bits (903), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 173/174 (99%), Positives = 173/174 (99%), Gaps = 0/174 (0%)
Query 1 VAPTGQAVDVAVREGAGDVGYSVERENLPADDPVRNGNRWRVIAVDTEHHRIAARRLGDG 60
VAPTGQAVDVAVREGAGDVGYSVERENLP DDPVRNGNRWRVIAVDTEHHRIAARRLGDG
Sbjct 25 VAPTGQAVDVAVREGAGDVGYSVERENLPPDDPVRNGNRWRVIAVDTEHHRIAARRLGDG 84
Query 61 ARAAFSGDYLHEHITHGYAITVHASQGTTAHSTHAVLGDNTSRATLYVAMTPARESNTAY 120
ARAAFSGDYLHEHITHGYAITVHASQGTTAHSTHAVLGDNTSRATLYVAMTPARESNTAY
Sbjct 85 ARAAFSGDYLHEHITHGYAITVHASQGTTAHSTHAVLGDNTSRATLYVAMTPARESNTAY 144
Query 121 LCERTAGEGARVDLAGWDLWVSGKAEAMSDEKSASPVWCRVGARCDHRGKRSCW 174
LCERTAGEGARVDLAGWDLWVSGKAEAMSDEKSASPVWCRVGARCDHRGKRSCW
Sbjct 145 LCERTAGEGARVDLAGWDLWVSGKAEAMSDEKSASPVWCRVGARCDHRGKRSCW 198
>gi|15609448|ref|NP_216827.1| hypothetical protein Rv2311 [Mycobacterium tuberculosis H37Rv]
gi|15841815|ref|NP_336852.1| hypothetical protein MT2373 [Mycobacterium tuberculosis CDC1551]
gi|31793494|ref|NP_855987.1| hypothetical protein Mb2338 [Mycobacterium bovis AF2122/97]
43 more sequence titles
Length=174
Score = 352 bits (903), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 173/174 (99%), Positives = 174/174 (100%), Gaps = 0/174 (0%)
Query 1 VAPTGQAVDVAVREGAGDVGYSVERENLPADDPVRNGNRWRVIAVDTEHHRIAARRLGDG 60
+APTGQAVDVAVREGAGDVGYSVERENLPADDPVRNGNRWRVIAVDTEHHRIAARRLGDG
Sbjct 1 MAPTGQAVDVAVREGAGDVGYSVERENLPADDPVRNGNRWRVIAVDTEHHRIAARRLGDG 60
Query 61 ARAAFSGDYLHEHITHGYAITVHASQGTTAHSTHAVLGDNTSRATLYVAMTPARESNTAY 120
ARAAFSGDYLHEHITHGYAITVHASQGTTAHSTHAVLGDNTSRATLYVAMTPARESNTAY
Sbjct 61 ARAAFSGDYLHEHITHGYAITVHASQGTTAHSTHAVLGDNTSRATLYVAMTPARESNTAY 120
Query 121 LCERTAGEGARVDLAGWDLWVSGKAEAMSDEKSASPVWCRVGARCDHRGKRSCW 174
LCERTAGEGARVDLAGWDLWVSGKAEAMSDEKSASPVWCRVGARCDHRGKRSCW
Sbjct 121 LCERTAGEGARVDLAGWDLWVSGKAEAMSDEKSASPVWCRVGARCDHRGKRSCW 174
>gi|32470510|ref|NP_863500.1| putative relaxase [Mycobacterium avium]
gi|16555327|gb|AAL23621.1| putative relaxase [Mycobacterium avium]
Length=942
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/100 (71%), Positives = 83/100 (83%), Gaps = 0/100 (0%)
Query 29 PADDPVRNGNRWRVIAVDTEHHRIAARRLGDGARAAFSGDYLHEHITHGYAITVHASQGT 88
PA DPVRNG RWRV+AVD E HRIAARRL DGAR FSGDYLH+H+THGYA+TVH++QG
Sbjct 731 PAADPVRNGQRWRVLAVDPEKHRIAARRLDDGARTVFSGDYLHQHVTHGYAVTVHSAQGV 790
Query 89 TAHSTHAVLGDNTSRATLYVAMTPARESNTAYLCERTAGE 128
TA +THAVLG+ T+R+ LYVA+T R +N AYL ER AGE
Sbjct 791 TAETTHAVLGETTTRSLLYVALTRGRHTNHAYLYERLAGE 830
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/25 (80%), Positives = 24/25 (96%), Gaps = 0/25 (0%)
Query 1 VAPTGQAVDVAVREGAGDVGYSVER 25
+APTG+AVDVAVREGAGDVGY+V +
Sbjct 502 IAPTGKAVDVAVREGAGDVGYTVAK 526
>gi|183983583|ref|YP_001851874.1| ATP-dependent exoDNAse (exonuclease V) [Mycobacterium marinum
M]
gi|183176909|gb|ACC42019.1| ATP-dependent exodnase (exonuclease V) [Mycobacterium marinum
M]
Length=934
Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/97 (75%), Positives = 84/97 (87%), Gaps = 0/97 (0%)
Query 32 DPVRNGNRWRVIAVDTEHHRIAARRLGDGARAAFSGDYLHEHITHGYAITVHASQGTTAH 91
DPVRNGNRWR+ AVD ++R+AARRL DGARAAF+GDYL EHIT+GYAITVH++QG TA
Sbjct 730 DPVRNGNRWRIYAVDPGNNRVAARRLHDGARAAFTGDYLREHITYGYAITVHSAQGVTAD 789
Query 92 STHAVLGDNTSRATLYVAMTPARESNTAYLCERTAGE 128
+THAVLG+NT+RA LYVAMT R +NTAYL ER AGE
Sbjct 790 TTHAVLGENTTRALLYVAMTRGRSANTAYLHERIAGE 826
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 23/25 (92%), Gaps = 0/25 (0%)
Query 1 VAPTGQAVDVAVREGAGDVGYSVER 25
+APTG AVDVA+REGAGDVGY++ +
Sbjct 499 LAPTGTAVDVAIREGAGDVGYTIAK 523
>gi|296165867|ref|ZP_06848350.1| ATP-dependent exoDNAse (exonuclease V) [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295898777|gb|EFG78300.1| ATP-dependent exoDNAse (exonuclease V) [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=949
Score = 140 bits (352), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 67/100 (67%), Positives = 79/100 (79%), Gaps = 0/100 (0%)
Query 29 PADDPVRNGNRWRVIAVDTEHHRIAARRLGDGARAAFSGDYLHEHITHGYAITVHASQGT 88
P+ DPVRNG RW+V+AVD EH RIAARRL DGAR SGDYL EH+++GYA+TVHA+QG
Sbjct 736 PSADPVRNGQRWQVLAVDREHDRIAARRLEDGARVVLSGDYLREHVSYGYAVTVHAAQGV 795
Query 89 TAHSTHAVLGDNTSRATLYVAMTPARESNTAYLCERTAGE 128
TA + HAVLG++T R LYVAMT RE+N AYL ER GE
Sbjct 796 TADTAHAVLGESTRRNLLYVAMTRGRETNHAYLYERLGGE 835
Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/23 (83%), Positives = 21/23 (92%), Gaps = 0/23 (0%)
Query 1 VAPTGQAVDVAVREGAGDVGYSV 23
VAPTG+AVDVAVREGAGD G +V
Sbjct 506 VAPTGKAVDVAVREGAGDTGVTV 528
>gi|296164391|ref|ZP_06846967.1| ATP-dependent exoDNAse (exonuclease V) [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295900271|gb|EFG79701.1| ATP-dependent exoDNAse (exonuclease V) [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=936
Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/103 (66%), Positives = 78/103 (76%), Gaps = 1/103 (0%)
Query 27 NLPADDPVRNGNRWRVIAVDTEHHRIAARRLGDGARAAFSGDYLHEHITHGYAITVHASQ 86
+PAD PVRNG RW V AVD H RIAARRL DGARA FSGDYL EH+T+GY +TVH++Q
Sbjct 728 KIPAD-PVRNGQRWTVFAVDPTHDRIAARRLDDGARAVFSGDYLREHVTYGYVVTVHSAQ 786
Query 87 GTTAHSTHAVLGDNTSRATLYVAMTPARESNTAYLCERTAGEG 129
G TA +THAVL + TSR LYVA+T R +N YL +R AGEG
Sbjct 787 GVTADTTHAVLAETTSRNLLYVALTRGRAANHVYLHDRQAGEG 829
Score = 43.1 bits (100), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/25 (80%), Positives = 23/25 (92%), Gaps = 0/25 (0%)
Query 1 VAPTGQAVDVAVREGAGDVGYSVER 25
VAPTG+AVDVAVREGAGD GY+V +
Sbjct 501 VAPTGRAVDVAVREGAGDTGYTVAK 525
>gi|145226210|ref|YP_001136860.1| exonuclease V subunit alpha [Mycobacterium gilvum PYR-GCK]
gi|145218671|gb|ABP48072.1| ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase
superfamily I member-like protein [Mycobacterium gilvum PYR-GCK]
Length=945
Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/97 (54%), Positives = 67/97 (70%), Gaps = 0/97 (0%)
Query 32 DPVRNGNRWRVIAVDTEHHRIAARRLGDGARAAFSGDYLHEHITHGYAITVHASQGTTAH 91
D VRNGNRWRV +D + +R+AA RL D AR F GDYL +H+ GYA+TVHA+QG T
Sbjct 731 DQVRNGNRWRVAGIDEKTNRVAAERLTDKARVLFEGDYLRQHVHLGYAVTVHAAQGVTVD 790
Query 92 STHAVLGDNTSRATLYVAMTPARESNTAYLCERTAGE 128
+ H VLG+N SR YV ++ R++N AYL R +GE
Sbjct 791 TAHTVLGENASRTQAYVGLSRGRQTNHAYLYTRFSGE 827
>gi|145226175|ref|YP_001136826.1| exonuclease V subunit alpha [Mycobacterium gilvum PYR-GCK]
gi|315441675|ref|YP_004074551.1| TrwC relaxase [Mycobacterium sp. Spyr1]
gi|145218636|gb|ABP48038.1| ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase
superfamily I member-like protein [Mycobacterium gilvum PYR-GCK]
gi|315265330|gb|ADU02070.1| TrwC relaxase [Mycobacterium sp. Spyr1]
Length=944
Score = 107 bits (267), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 52/97 (54%), Positives = 64/97 (66%), Gaps = 0/97 (0%)
Query 32 DPVRNGNRWRVIAVDTEHHRIAARRLGDGARAAFSGDYLHEHITHGYAITVHASQGTTAH 91
D VRNGNRWRV VD +R+AA RL D AR F GDYL +H+ GYA+TVHA+QG T
Sbjct 731 DQVRNGNRWRVAGVDETTNRVAAERLTDKARVLFDGDYLRQHVHLGYAVTVHAAQGVTVD 790
Query 92 STHAVLGDNTSRATLYVAMTPARESNTAYLCERTAGE 128
+ H VLG+ SR YV ++ R++N AYL R GE
Sbjct 791 TAHTVLGETASRTQAYVGLSRGRQTNHAYLYTRFGGE 827
>gi|119854906|ref|YP_935511.1| exonuclease V subunit alpha [Mycobacterium sp. KMS]
gi|119697624|gb|ABL94696.1| ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase
superfamily I member-like protein [Mycobacterium sp. KMS]
Length=946
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/103 (51%), Positives = 70/103 (68%), Gaps = 6/103 (5%)
Query 32 DPVRNGNRWRVIAVDTEHHRIAARRLGDGARAAFSGDYLHEHITHGYAITVHASQG---- 87
D VRNGNRWRV +D + +R+AA RL D AR F GDYL +++T GYA+TVH++QG
Sbjct 728 DQVRNGNRWRVAGIDEKTNRVAAERLTDKARVVFDGDYLRQNVTLGYAVTVHSAQGVTVG 787
Query 88 --TTAHSTHAVLGDNTSRATLYVAMTPARESNTAYLCERTAGE 128
TT H++L D +SRA YV MT A++ N AY+ +R +GE
Sbjct 788 NKTTPGVCHSILADTSSRAMAYVGMTRAKDENHAYVYQRISGE 830
>gi|315441605|ref|YP_004074482.1| TrwC relaxase [Mycobacterium sp. Spyr1]
gi|315265260|gb|ADU02001.1| TrwC relaxase [Mycobacterium sp. Spyr1]
Length=946
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/103 (51%), Positives = 70/103 (68%), Gaps = 6/103 (5%)
Query 32 DPVRNGNRWRVIAVDTEHHRIAARRLGDGARAAFSGDYLHEHITHGYAITVHASQG---- 87
D VRNGNRWRV +D + +R+AA RL D AR F GDYL +++T GYA+TVH++QG
Sbjct 728 DQVRNGNRWRVAGIDEKTNRVAAERLTDKARVVFDGDYLRQNVTLGYAVTVHSAQGVTVG 787
Query 88 --TTAHSTHAVLGDNTSRATLYVAMTPARESNTAYLCERTAGE 128
TT H++L D +SRA YV MT A++ N AY+ +R +GE
Sbjct 788 NKTTPGVCHSILADTSSRAMAYVGMTRAKDENHAYVYQRISGE 830
>gi|296165423|ref|ZP_06847961.1| possible exonuclease V subunit alpha [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899223|gb|EFG78691.1| possible exonuclease V subunit alpha [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=537
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/86 (60%), Positives = 56/86 (66%), Gaps = 6/86 (6%)
Query 32 DPVRNGNRWRVIAVDTEHHRIAARRLGDGARAAFSGDYLHEHITHGYAITVHASQG---- 87
D VRNGNRWRV+ VD E R+AA RL D ARA F GDYL EHIT GYA T+HA+QG
Sbjct 452 DQVRNGNRWRVVGVDAERGRLAAERLTDQARAIFEGDYLREHITLGYATTLHAAQGITVG 511
Query 88 --TTAHSTHAVLGDNTSRATLYVAMT 111
TT + VL D SRA YV MT
Sbjct 512 NATTPGACFTVLSDKASRAMAYVGMT 537
Score = 37.7 bits (86), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query 1 VAPTGQAVDVAVREGAGDVGYSVERENLPADDPVRNGNRWRVIAVD-------TEHHRIA 53
+APTG+AVD A+R+GAGD G +V + +D + R VI VD E H++
Sbjct 207 LAPTGKAVDEAMRDGAGDRGLTVAKALKLIEDNQLDVGRRTVIVVDEASMLGTPELHKLL 266
Query 54 ARRLGDGARAAFSGD 68
A + A+ GD
Sbjct 267 ACAVMGRAKMVLVGD 281
>gi|240170346|ref|ZP_04749005.1| putative relaxase [Mycobacterium kansasii ATCC 12478]
Length=587
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/96 (47%), Positives = 60/96 (63%), Gaps = 0/96 (0%)
Query 34 VRNGNRWRVIAVDTEHHRIAARRLGDGARAAFSGDYLHEHITHGYAITVHASQGTTAHST 93
VRNG RW V AVDT I ARR+GD A A GDYL EH+ HGYA+T+ + QG T +
Sbjct 372 VRNGQRWIVEAVDTARQTILARRIGDDAVAILGGDYLREHVHHGYAVTLQSEQGDTGQTA 431
Query 94 HAVLGDNTSRATLYVAMTPARESNTAYLCERTAGEG 129
+ ++ T R +LY +T RE N ++ ++ AGEG
Sbjct 432 YPIVSARTDRKSLYTGLTRGREMNRVFIYDKIAGEG 467
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/37 (52%), Positives = 26/37 (71%), Gaps = 4/37 (10%)
Query 1 VAPTGQAVDVAVREGAGDVGYSVERENLPADDPVRNG 37
+AP G+AVDVA+ E AGD GY+V++ L +RNG
Sbjct 134 LAPQGRAVDVAINECAGDEGYTVDKALL----ELRNG 166
>gi|169786824|ref|YP_001700713.1| TraA/ATP-dependent exoDNAse/relaxase [Mycobacterium abscessus
ATCC 19977]
Length=1139
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/98 (52%), Positives = 65/98 (67%), Gaps = 1/98 (1%)
Query 32 DPVRNGNRWRVIAVDTEHHRIAARRLGDGARAAFSGDYLHEHITHGYAITVHASQGTTAH 91
DP+RNG RW V+AVD + RIAARRL D A A SGDYL ++ GYA+TVHA+QG TA
Sbjct 752 DPIRNGQRWEVLAVDPDAGRIAARRLDDRAVAVLSGDYLRQYTHLGYAVTVHAAQGVTAD 811
Query 92 STHAVL-GDNTSRATLYVAMTPARESNTAYLCERTAGE 128
+ H +L + +R+ YV +T R +NT L + AGE
Sbjct 812 TCHTLLSAEAATRSIAYVGLTRGRHTNTVRLYDTRAGE 849
>gi|184152627|ref|YP_001840830.1| ATP-dependent exoDNAse (exonuclease V) [Mycobacterium marinum
M]
gi|183178787|gb|ACC43896.1| ATP-dependent exodnase (exonuclease V) [Mycobacterium marinum
M]
gi|242310899|emb|CAM59642.2| TraA/ATP-dependent exoDNAse/relaxase [Mycobacterium abscessus]
Length=1110
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/98 (52%), Positives = 65/98 (67%), Gaps = 1/98 (1%)
Query 32 DPVRNGNRWRVIAVDTEHHRIAARRLGDGARAAFSGDYLHEHITHGYAITVHASQGTTAH 91
DP+RNG RW V+AVD + RIAARRL D A A SGDYL ++ GYA+TVHA+QG TA
Sbjct 723 DPIRNGQRWEVLAVDPDAGRIAARRLDDRAVAVLSGDYLRQYTHLGYAVTVHAAQGVTAD 782
Query 92 STHAVL-GDNTSRATLYVAMTPARESNTAYLCERTAGE 128
+ H +L + +R+ YV +T R +NT L + AGE
Sbjct 783 TCHTLLSAEAATRSIAYVGLTRGRHTNTVRLYDTRAGE 820
>gi|269955652|ref|YP_003325441.1| TrwC relaxase [Xylanimonas cellulosilytica DSM 15894]
gi|269304333|gb|ACZ29883.1| TrwC relaxase [Xylanimonas cellulosilytica DSM 15894]
Length=1175
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/94 (41%), Positives = 52/94 (56%), Gaps = 5/94 (5%)
Query 34 VRNGNRWRVIAVDTEHHRIA-----ARRLGDGARAAFSGDYLHEHITHGYAITVHASQGT 88
VRNG+RW+V+ V +A A + GA Y+ EH+ GYA+T H +QG
Sbjct 802 VRNGDRWKVLDVRRNGSVLAGAMDQAGKQRRGATVVLPPSYVAEHVELGYAVTAHRAQGM 861
Query 89 TAHSTHAVLGDNTSRATLYVAMTPARESNTAYLC 122
T + H V+ T+R LYV+MT RESN AY+
Sbjct 862 TVDTAHVVVAGGTTRENLYVSMTRGRESNIAYVA 895
>gi|269957122|ref|YP_003326911.1| TrwC relaxase [Xylanimonas cellulosilytica DSM 15894]
gi|269305803|gb|ACZ31353.1| TrwC relaxase [Xylanimonas cellulosilytica DSM 15894]
Length=1176
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/94 (42%), Positives = 55/94 (59%), Gaps = 9/94 (9%)
Query 34 VRNGNRWRVIAVDTEHHR---IAARRLGD--GARAAFSGDYLHEHITHGYAITVHASQGT 88
VRNG+RWR+I V HR + RR G GA +Y+ +H+ GYA+T + +QG
Sbjct 803 VRNGDRWRIIDV----HRSGDVEVRREGYTYGAAVVLPTEYVAQHLDLGYAVTAYRAQGM 858
Query 89 TAHSTHAVLGDNTSRATLYVAMTPARESNTAYLC 122
T + H V+ +R LYVAMT R++NTAY+
Sbjct 859 TVDTCHVVVAPGATRENLYVAMTRGRDANTAYVA 892
>gi|326331483|ref|ZP_08197773.1| transfer protein TraA [Nocardioidaceae bacterium Broad-1]
gi|325950739|gb|EGD42789.1| transfer protein TraA [Nocardioidaceae bacterium Broad-1]
Length=1108
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/89 (41%), Positives = 49/89 (56%), Gaps = 0/89 (0%)
Query 34 VRNGNRWRVIAVDTEHHRIAARRLGDGARAAFSGDYLHEHITHGYAITVHASQGTTAHST 93
VRNG+RW V V + R+ G A DY H+ GYA+T H ++G T +
Sbjct 742 VRNGHRWEVTQVHRDGSMTVRRKHGHRATLTLPADYAAAHVDLGYAVTAHRAEGLTVDTA 801
Query 94 HAVLGDNTSRATLYVAMTPARESNTAYLC 122
H ++ T+R LYVAMT RE+NTAY+
Sbjct 802 HVLVTARTTREHLYVAMTRGREANTAYVA 830
>gi|262118168|ref|YP_003275938.1| TrwC relaxase [Gordonia bronchialis DSM 43247]
gi|262088078|gb|ACY24045.1| TrwC relaxase [Gordonia bronchialis DSM 43247]
Length=2090
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/95 (43%), Positives = 55/95 (58%), Gaps = 1/95 (1%)
Query 28 LPADDPVRNGNRWRVIAVDTEHHRIAARRLGDGARAAFSGDYLHEHITHGYAITVHASQG 87
L A D VRNG+RW+V A+ + + A+ L G DY+ ++ T GYA T+HA+QG
Sbjct 935 LSATDWVRNGDRWQVTALGADGA-LTAQHLDTGRLITLPADYVADNTTLGYASTIHAAQG 993
Query 88 TTAHSTHAVLGDNTSRATLYVAMTPARESNTAYLC 122
TA + H V D +R LYVA+T R +N YL
Sbjct 994 MTADTCHVVGSDALTRQLLYVALTRGRHANHIYLA 1028
>gi|40445348|ref|NP_954808.1| TraA protein [Gordonia westfalica]
gi|40217378|emb|CAE09129.1| putative TraA protein [Gordonia westfalica]
Length=2072
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/92 (44%), Positives = 50/92 (55%), Gaps = 1/92 (1%)
Query 30 ADDPVRNGNRWRVIAVDTEHHRIAARRLGDGARAAFSGDYLHEHITHGYAITVHASQGTT 89
A D VRNG+RWRV + + + A+ L DY+ EH T GYA T+HA+QG T
Sbjct 924 ATDWVRNGDRWRVTHIGADG-TLTAQHLDLNRHVQLPADYVAEHTTLGYASTIHAAQGMT 982
Query 90 AHSTHAVLGDNTSRATLYVAMTPARESNTAYL 121
A + H + D R LYVAMT R N YL
Sbjct 983 ADTCHVIGSDALDRQLLYVAMTRGRHGNHIYL 1014
>gi|260907416|ref|ZP_05915738.1| conjugative relaxase domain protein, TrwC/TraI family [Brevibacterium
linens BL2]
Length=1183
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/96 (41%), Positives = 57/96 (60%), Gaps = 7/96 (7%)
Query 34 VRNGNRWRVIAVDTEHHRIAARRLGDGARAA-----FSGDYLHEHITHGYAITVHASQGT 88
V+NG+RW V A E+ +A RRLG G + A +Y+ E + GYA TVH +QG
Sbjct 802 VKNGDRWSV-ARRLENGALAVRRLGPGDQPAGAELVLPAEYVAEDVELGYATTVHRAQGA 860
Query 89 TAHSTHAVLGDNT-SRATLYVAMTPARESNTAYLCE 123
+ + HA++ T SR YVAMT +++NTAY+ +
Sbjct 861 SVDTVHALVDPETASRELFYVAMTRGKQNNTAYIIQ 896
>gi|300742451|ref|ZP_07072472.1| putative toprim domain protein [Rothia dentocariosa M567]
gi|300381636|gb|EFJ78198.1| putative toprim domain protein [Rothia dentocariosa M567]
Length=1652
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/91 (38%), Positives = 53/91 (59%), Gaps = 1/91 (1%)
Query 32 DPVRNGNRWRVIAVDTEHHRIAARRLGDGARAAFSGDYLHEHITHGYAITVHASQGTTAH 91
D V+NG+ WRV + + RI A+ G G + Y+ + + GYA T+H +QG+T
Sbjct 973 DFVKNGDLWRVTGLHDDG-RITAQHTGHGGKVTLPASYVEQSVELGYAATIHRAQGSTVD 1031
Query 92 STHAVLGDNTSRATLYVAMTPARESNTAYLC 122
+ HA++ +T RA YVA+T RE+N Y+
Sbjct 1032 TAHALVDASTDRAGAYVALTRGRENNQLYVS 1062
>gi|326330139|ref|ZP_08196450.1| transfer protein TraA [Nocardioidaceae bacterium Broad-1]
gi|325951952|gb|EGD43981.1| transfer protein TraA [Nocardioidaceae bacterium Broad-1]
Length=1184
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/89 (36%), Positives = 51/89 (58%), Gaps = 0/89 (0%)
Query 34 VRNGNRWRVIAVDTEHHRIAARRLGDGARAAFSGDYLHEHITHGYAITVHASQGTTAHST 93
VRNG+RW+V+ V + R+ G DY+ ++ GYA+T H ++G T +
Sbjct 818 VRNGHRWQVLDVHRDGSMTVRRQHGRRVTLTLPADYVETYVGLGYAVTAHRAEGLTVDTA 877
Query 94 HAVLGDNTSRATLYVAMTPARESNTAYLC 122
H ++ T+R LYVAM+ R++NTAY+
Sbjct 878 HVLVTPRTTREHLYVAMSRGRDANTAYVA 906
>gi|284989333|ref|YP_003407887.1| TrwC relaxase [Geodermatophilus obscurus DSM 43160]
gi|284062578|gb|ADB73516.1| TrwC relaxase [Geodermatophilus obscurus DSM 43160]
Length=1836
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/134 (41%), Positives = 69/134 (52%), Gaps = 12/134 (8%)
Query 3 PTGQAVDVA--VREGAGDVGYSVEREN---LP--ADDPVRNGNRWRVIAVDTEHHRIAAR 55
P G V +A R GAGD + R N LP A D V+NG+R+ V AV + +A
Sbjct 819 PPGPEVVLADGTRAGAGDA--VITRRNDRTLPLGASDWVKNGDRFTVHAVGGDGA-LAVV 875
Query 56 RLGDGARAAFSGDYLHEHITHGYAITVHASQGTTAHSTHAVLGDNTSRATLYVAMTPARE 115
G R Y+ EH+ GYA TVH +QG TA + H VL SR LYVA++ R
Sbjct 876 HTGTKRRLTLPAAYVGEHVRLGYAATVHGAQGVTADTCHTVLTGAESRQLLYVALSRGRS 935
Query 116 SNTAYLCERTAGEG 129
+N YL T G+G
Sbjct 936 ANHLYLS--TVGDG 947
>gi|283826934|ref|YP_003377696.1| TraA [Corynebacterium glutamicum]
gi|283362274|dbj|BAI66031.1| TraA, Corynebacterium glutamicum LP-6 plasmid pGA2
Length=1158
Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/99 (43%), Positives = 53/99 (54%), Gaps = 3/99 (3%)
Query 32 DPVRNGNRWRVIAVDTEHHRIAARRLGD-GARAAFSGDYLHEHITHGYAITVHASQGTTA 90
D VRNG RW+V A+D + + ARRL D A YL EH+ GYA T HA+QG T
Sbjct 727 DVVRNGQRWQVEAIDGDGF-VLARRLDDTAATVRLHPAYLAEHVQLGYASTGHAAQGATV 785
Query 91 HSTHAVLG-DNTSRATLYVAMTPARESNTAYLCERTAGE 128
V G RA +YV +T RE+N Y+ E G+
Sbjct 786 DVARVVAGVGQIDRAGVYVPLTRGREANYLYMAESMPGD 824
>gi|17158096|ref|NP_478092.1| TraA protein [Corynebacterium glutamicum]
gi|17059615|emb|CAD12223.1| TraA protein [Corynebacterium glutamicum]
Length=1164
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/99 (42%), Positives = 53/99 (54%), Gaps = 3/99 (3%)
Query 32 DPVRNGNRWRVIAVDTEHHRIAARRLGD-GARAAFSGDYLHEHITHGYAITVHASQGTTA 90
D VRNG RW++ A+D + + ARRL D A YL EH+ GYA T HA+QG T
Sbjct 733 DVVRNGQRWQIEAIDGDGF-VLARRLDDTAATVRLHPAYLAEHVQLGYASTGHAAQGATV 791
Query 91 HSTHAVLG-DNTSRATLYVAMTPARESNTAYLCERTAGE 128
V G RA +YV +T RE+N Y+ E G+
Sbjct 792 DVARVVAGVGQIDRAGVYVPLTRGREANYLYMAESMPGD 830
>gi|32455541|ref|NP_862296.1| transfer protein homolog TraA [Corynebacterium glutamicum]
gi|9836708|gb|AAG00272.1|AF164956_4 transfer protein homolog TraA [Corynebacterium glutamicum]
Length=1160
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/99 (42%), Positives = 53/99 (54%), Gaps = 3/99 (3%)
Query 32 DPVRNGNRWRVIAVDTEHHRIAARRLGD-GARAAFSGDYLHEHITHGYAITVHASQGTTA 90
D VRNG RW+V A++ + + ARRL D A YL EH+ GYA T HA+QG T
Sbjct 733 DVVRNGQRWQVEAIEGDGF-VLARRLDDTAATVRLPAGYLAEHVQLGYASTGHAAQGATV 791
Query 91 HSTHAVLG-DNTSRATLYVAMTPARESNTAYLCERTAGE 128
V G RA +YV +T RE+N Y+ E G+
Sbjct 792 DVARVVAGVGQIDRAGVYVPLTRGREANYLYMAESMPGD 830
>gi|119715816|ref|YP_922781.1| DNA primase catalytic core [Nocardioides sp. JS614]
gi|119536477|gb|ABL81094.1| DNA primase catalytic core, N-terminal domain [Nocardioides sp.
JS614]
Length=1797
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/88 (40%), Positives = 50/88 (57%), Gaps = 1/88 (1%)
Query 34 VRNGNRWRVIAVDTEHHRIAARRLGDGARAAFSGDYLHEHITHGYAITVHASQGTTAHST 93
V+NG+RWR+ V + + AR L G DY+ +H+ GYA TVH +QG TA +
Sbjct 875 VKNGDRWRIEKVLGDGG-LLARHLELGRTVELPLDYVAQHVHLGYATTVHGAQGMTADTA 933
Query 94 HAVLGDNTSRATLYVAMTPARESNTAYL 121
H V +R TLYV ++ R++N YL
Sbjct 934 HLVAAGEETRQTLYVGISRGRQANHIYL 961
>gi|27764610|ref|NP_776232.1| hypothetical protein pGA2_p04 [Corynebacterium glutamicum]
gi|27657781|gb|AAO18209.1| TraA [Corynebacterium glutamicum]
Length=1164
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/99 (42%), Positives = 53/99 (54%), Gaps = 3/99 (3%)
Query 32 DPVRNGNRWRVIAVDTEHHRIAARRLGD-GARAAFSGDYLHEHITHGYAITVHASQGTTA 90
D VRNG RW+V A++ + + ARRL D A YL EH+ GYA T HA+QG T
Sbjct 733 DVVRNGQRWQVEAIEGDGF-VLARRLDDTAATVRLHPAYLAEHVQLGYASTGHAAQGATV 791
Query 91 HSTHAVLG-DNTSRATLYVAMTPARESNTAYLCERTAGE 128
V G RA +YV +T RE+N Y+ E G+
Sbjct 792 DVARVVAGVGQIDRAGVYVPLTRGREANYLYMAESMPGD 830
>gi|133757382|ref|YP_001096262.1| hypothetical protein pLEW279b_p20 [Corynebacterium sp. L2-79-05]
gi|110084157|gb|ABG49311.1| hypothetical protein [Corynebacterium sp. L2-79-05]
Length=1346
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/120 (35%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query 5 GQAVDVAVREGAGDVGYSVERENLPADDPVRNGNRWRVIAVDTEHHRIAARRL-GDGARA 63
G AV R GD + + + LP+ V NG R+ V + + +A + L G
Sbjct 837 GVAVSGDARVHVGDTILTRKNDTLPSGRRVLNGERFEVAGL-LDDGSLAVKELNGKNKTM 895
Query 64 AFSGDYLHEHITHGYAITVHASQGTTAHSTHAVLGDNTSRATLYVAMTPARESNTAYLCE 123
DY+ EH+ GYA TV+ +QG T + A++G T R LYVAMT A+ N Y+ +
Sbjct 896 VLPADYVREHVQLGYASTVYRAQGITVENARAIVGAETDRRALYVAMTRAKWQNHVYVAD 955
>gi|32470500|ref|NP_863184.1| hypothetical protein pNG2_p09 [Corynebacterium diphtheriae]
gi|20149035|gb|AAM12769.1|AF492560_10 TraA [Corynebacterium diphtheriae]
Length=1116
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/99 (41%), Positives = 52/99 (53%), Gaps = 3/99 (3%)
Query 32 DPVRNGNRWRVIAVDTEHHRIAARRLGDG-ARAAFSGDYLHEHITHGYAITVHASQGTTA 90
D VRNG RW V ++ + I ARR D A + DYL +H GYA T H+SQG T
Sbjct 731 DVVRNGQRWVVDSIGKDGS-ITARRCDDDLATVTLNRDYLDKHTQLGYAATGHSSQGATV 789
Query 91 HSTHAVLG-DNTSRATLYVAMTPARESNTAYLCERTAGE 128
V G N ++++YV MT RE N Y+ E G+
Sbjct 790 DVARVVAGVGNLDKSSVYVPMTRGREGNFLYIAETQPGD 828
>gi|332671637|ref|YP_004454645.1| conjugative relaxase domain-containing protein [Cellulomonas
fimi ATCC 484]
gi|332340675|gb|AEE47258.1| conjugative relaxase domain protein [Cellulomonas fimi ATCC 484]
Length=963
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/127 (38%), Positives = 59/127 (47%), Gaps = 7/127 (5%)
Query 1 VAPTGQAVDVAVREGAGD--VGYSVERENLPADDPVRNGNRWRVIAVDTE---HHRIAAR 55
V PTG ++ + G GD V R AD VRNG W V A + H R A R
Sbjct 753 VDPTGVSLHDGLTAGVGDRIVTRRNHRRLTTADGFVRNGALWDVTAALPDGSLHVRPANR 812
Query 56 RLGDGARAAFSGDYLHEHITHGYAITVHASQGTTAHSTHAVLGDNTSRATLYVAMTPARE 115
D A DY+ EH+ GYA T+ +QG T TH + R LYVAM+ R
Sbjct 813 --ADAATVRLPADYVAEHVELGYATTIARTQGMTVDETHTIATPGMGREDLYVAMSRGRH 870
Query 116 SNTAYLC 122
+N AY+
Sbjct 871 TNRAYVV 877
>gi|23577999|ref|NP_702946.1| putative conjugal transfer protein [Corynebacterium efficiens
YS-314]
gi|23494825|dbj|BAC19788.1| putative conjugal transfer protein traA [Corynebacterium efficiens
YS-314]
Length=1186
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/101 (42%), Positives = 54/101 (54%), Gaps = 3/101 (2%)
Query 30 ADDPVRNGNRWRVIAVDTEHHRIAARRLGDG-ARAAFSGDYLHEHITHGYAITVHASQGT 88
A D VRNG RW +I E + ARR+ D A A DY+ +H+ GYA T HA+QG
Sbjct 731 AGDIVRNGQRW-IIQDVHEDGSMTARRMDDTHATAHLPVDYVKDHVQLGYASTGHAAQGA 789
Query 89 TAHSTHAVLG-DNTSRATLYVAMTPARESNTAYLCERTAGE 128
T + H V G RA +YV +T R N YL + AG+
Sbjct 790 TVDTCHVVAGLGQVDRAGVYVPLTRGRYENHLYLMDTRAGD 830
>gi|259506148|ref|ZP_05749050.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
gi|259166269|gb|EEW50823.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length=1067
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/101 (42%), Positives = 54/101 (54%), Gaps = 3/101 (2%)
Query 30 ADDPVRNGNRWRVIAVDTEHHRIAARRLGDG-ARAAFSGDYLHEHITHGYAITVHASQGT 88
A D VRNG RW +I E + ARR+ D A A DY+ +H+ GYA T HA+QG
Sbjct 612 AGDIVRNGQRW-IIQDVHEDGSMTARRMDDTHATAHLPVDYVKDHVQLGYASTGHAAQGA 670
Query 89 TAHSTHAVLG-DNTSRATLYVAMTPARESNTAYLCERTAGE 128
T + H V G RA +YV +T R N YL + AG+
Sbjct 671 TVDTCHVVAGLGQVDRAGVYVPLTRGRYENHLYLMDTRAGD 711
>gi|296164050|ref|ZP_06846673.1| exonuclease V subunit alpha [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295900598|gb|EFG79981.1| exonuclease V subunit alpha [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=1953
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/99 (41%), Positives = 54/99 (55%), Gaps = 8/99 (8%)
Query 28 LPADDPVRNGNRWRVIAVDTEHHR---IAARRLGDGARAAFSGDYLHEHITHGYAITVHA 84
L D VRNG R++++ E HR I AR LG G Y+ +H+T GYA T+ +
Sbjct 877 LSPTDYVRNGYRFQIL----EIHRNGSIKARHLGSGQTVRLPAHYVIKHVTLGYAATIDS 932
Query 85 SQGTTA-HSTHAVLGDNTSRATLYVAMTPARESNTAYLC 122
+QG TA H+ H V + +R LYVA+T R N YL
Sbjct 933 AQGLTAGHACHIVGAGSLTRQLLYVALTRGRIENHIYLS 971
>gi|295395619|ref|ZP_06805812.1| toprim domain protein [Brevibacterium mcbrellneri ATCC 49030]
gi|294971533|gb|EFG47415.1| toprim domain protein [Brevibacterium mcbrellneri ATCC 49030]
Length=386
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/135 (35%), Positives = 63/135 (47%), Gaps = 17/135 (12%)
Query 1 VAPTGQAVDVAVREGAGDVGYSVERENLPADDP--VRNGNRWRVIAVDTEHHR----IAA 54
V TG A+ G GD+ + E A V+NG+RW V A HR +
Sbjct 147 VHETGAALHDGTTAGVGDLVVTRRNERRLATGKSWVKNGDRWHVTA-----HRKDGALVV 201
Query 55 RRLGDG-----ARAAFSGDYLHEHITHGYAITVHASQGTTAHSTHAVLG-DNTSRATLYV 108
RRLG+G R Y+ EH+ GYA TVH QG+T + H ++ D SR LYV
Sbjct 202 RRLGEGDTPRGRRLVLPAKYVREHLELGYASTVHRVQGSTVDTAHTLVDPDTASRELLYV 261
Query 109 AMTPARESNTAYLCE 123
+T N AY+ +
Sbjct 262 GLTRGMHENHAYIIQ 276
>gi|108798401|ref|YP_638598.1| exonuclease V subunit alpha [Mycobacterium sp. MCS]
gi|119867498|ref|YP_937450.1| exonuclease V subunit alpha [Mycobacterium sp. KMS]
gi|108768820|gb|ABG07542.1| ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase
superfamily I member-like protein [Mycobacterium sp. MCS]
gi|119693587|gb|ABL90660.1| ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase
superfamily I member-like protein [Mycobacterium sp. KMS]
Length=1523
Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/96 (39%), Positives = 54/96 (57%), Gaps = 2/96 (2%)
Query 28 LPADDPVRNGNRWRVIAVDTEHHRIAARRLGDGARAAFSGDYLHEHITHGYAITVHASQG 87
L D VRNG + ++ + T+ + AR G G DY+ +H+T GYA T+ A+QG
Sbjct 880 LSGTDYVRNGYTFTIVDIATDGA-LTARHRGTGREITLPTDYVTDHVTLGYATTIDAAQG 938
Query 88 TTA-HSTHAVLGDNTSRATLYVAMTPARESNTAYLC 122
+TA H+ H V ++ +R LYVA+T R N YL
Sbjct 939 STAGHACHVVGAEHLTRQHLYVALTRGRAENHLYLS 974
>gi|333917553|ref|YP_004483503.1| relaxase [Amycolicicoccus subflavus DQS3-9A1]
gi|333484482|gb|AEF43041.1| relaxase [Amycolicicoccus subflavus DQS3-9A1]
Length=1404
Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/88 (41%), Positives = 47/88 (54%), Gaps = 1/88 (1%)
Query 34 VRNGNRWRVIAVDTEHHRIAARRLGDGARAAFSGDYLHEHITHGYAITVHASQGTTAHST 93
VRNG+ W + AV E AR L Y+ H+ GYA T+H +QG T +T
Sbjct 868 VRNGDLWTITAVH-EDGSAGARNLASRGAVTLPAGYVTTHVELGYACTIHRAQGVTVDTT 926
Query 94 HAVLGDNTSRATLYVAMTPARESNTAYL 121
HA++ +TSRA LYVA T R N Y+
Sbjct 927 HALITGHTSRAGLYVAATRGRTENHLYV 954
>gi|23577972|ref|NP_702920.1| putative conjugal transfer protein [Corynebacterium efficiens
YS-314]
gi|23494798|dbj|BAC19762.1| putative conjugal transfer protein traA [Corynebacterium efficiens
YS-314]
Length=1154
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/103 (43%), Positives = 51/103 (50%), Gaps = 7/103 (6%)
Query 30 ADDPVRNGNRWRVIAVDTEH--HRIAARRLGD-GARAAFSGDYLHEHITHGYAITVHASQ 86
A D VRNG RWR VD H I+A RL D A A YL E GYA T H++Q
Sbjct 753 AGDVVRNGQRWR---VDQLHGDGSISATRLDDTQATATIPASYLKESGQLGYASTGHSAQ 809
Query 87 GTTAHSTHAVLG-DNTSRATLYVAMTPARESNTAYLCERTAGE 128
G T V G RA++YV +T RE N YL E G+
Sbjct 810 GATVDVARVVAGAGQVDRASVYVPLTRGREGNYLYLTESMPGD 852
>gi|259508598|ref|ZP_05751498.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
gi|259163815|gb|EEW48369.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length=1135
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/103 (43%), Positives = 51/103 (50%), Gaps = 7/103 (6%)
Query 30 ADDPVRNGNRWRVIAVDTEH--HRIAARRLGD-GARAAFSGDYLHEHITHGYAITVHASQ 86
A D VRNG RWR VD H I+A RL D A A YL E GYA T H++Q
Sbjct 734 AGDVVRNGQRWR---VDQLHGDGSISATRLDDTQATATIPASYLKESGQLGYASTGHSAQ 790
Query 87 GTTAHSTHAVLG-DNTSRATLYVAMTPARESNTAYLCERTAGE 128
G T V G RA++YV +T RE N YL E G+
Sbjct 791 GATVDVARVVAGAGQVDRASVYVPLTRGREGNYLYLTESMPGD 833
>gi|300780558|ref|ZP_07090413.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
33030]
gi|300533544|gb|EFK54604.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
33030]
Length=332
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 15/100 (15%)
Query 34 VRNGNRWRVIAVDTEHHR----IAARRLGDG-----ARAAFSGDYLHEHITHGYAITVHA 84
++NG+RW V++ HR + RRLG G R Y+ EH+ GYA TVH
Sbjct 1 MKNGDRWHVVS-----HRKDGALVVRRLGKGDTPRGRRLVLPAKYVREHLELGYASTVHR 55
Query 85 SQGTTAHSTHAVLG-DNTSRATLYVAMTPARESNTAYLCE 123
+QG+T + H ++ D SR LYV +T N AY+ +
Sbjct 56 AQGSTVDTAHTLVDPDTASRELLYVGLTRGMHENHAYVIQ 95
>gi|225730232|ref|YP_002149549.2| putative conjugal transfer protein TraA [Rhodococcus equi]
gi|198040914|emb|CAQ30285.2| putative conjugal transfer protein TraA [Rhodococcus equi]
Length=1422
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/106 (34%), Positives = 50/106 (48%), Gaps = 9/106 (8%)
Query 34 VRNGNRWRVIAVDTEHHRIAARRLGDGARAAFSGDYLHEHITHGYAITVHASQGTTAHST 93
V+NG+ W V + + + DG + DY+ +++ GYA TVH SQG T S
Sbjct 850 VKNGDLWTVSEIGEDGSLRLRNNVSDG-EVTVAADYITDNVQLGYATTVHRSQGMTVGSC 908
Query 94 HAVLGDNTSRATLYVAMTPARESNTAYLCERTAGEGARVDLAGWDL 139
H + N R +LYVAMT + +N Y A +L WD
Sbjct 909 HVLAAANMDRQSLYVAMTRGKNTNIVY--------AANDELPDWDF 946
>gi|258652181|ref|YP_003201337.1| TrwC relaxase [Nakamurella multipartita DSM 44233]
gi|258555406|gb|ACV78348.1| TrwC relaxase [Nakamurella multipartita DSM 44233]
Length=1231
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/131 (36%), Positives = 60/131 (46%), Gaps = 10/131 (7%)
Query 34 VRNGNRWRVIAVDTEHHRIAARRLGDGARAA---FSGDYLHEHITHGYAITVHASQGTTA 90
VRNG RWRV + D S Y+H+H+ GYA T H +QG T
Sbjct 854 VRNGQRWRVERAHRDGSLTVRLHTSDDTGTTPIRLSATYVHDHVDLGYATTAHRAQGLTV 913
Query 91 HSTHAVLGDNTSRATLYVAMTPARESNTAYL-CERTAGEGARVD-----LAGWDLWVSGK 144
++H + T R YVAMT R NTAYL + A VD A D W + +
Sbjct 914 DTSHVLADALTQREAFYVAMTRGRYRNTAYLVLDPAATVRGIVDHPIGGSADQDSWTTQQ 973
Query 145 -AEAMSDEKSA 154
AE++SD SA
Sbjct 974 VAESISDHSSA 984
>gi|215481759|ref|YP_002149617.2| putative conjugal transfer protein TraA [Rhodococcus equi]
gi|198040915|emb|CAQ30357.2| putative conjugal transfer protein TraA [Rhodococcus equi]
Length=1422
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/106 (34%), Positives = 50/106 (48%), Gaps = 9/106 (8%)
Query 34 VRNGNRWRVIAVDTEHHRIAARRLGDGARAAFSGDYLHEHITHGYAITVHASQGTTAHST 93
V+NG+ W V + + + DG + DY+ +++ GYA TVH SQG T S
Sbjct 850 VKNGDLWTVSEIGEDGSLRLRNNVSDG-EVTVAADYITDNVQLGYATTVHRSQGMTVGSC 908
Query 94 HAVLGDNTSRATLYVAMTPARESNTAYLCERTAGEGARVDLAGWDL 139
H + N R +LYVAMT + +N Y A +L WD
Sbjct 909 HVLAAANMDRQSLYVAMTRGKNTNIVY--------AANDELPDWDF 946
>gi|10956647|ref|NP_066783.1| TraA-like protein [Rhodococcus equi]
gi|31983877|ref|NP_858485.1| conjugal transfer protein [Rhodococcus equi]
gi|10657894|gb|AAG21733.1| TraA-like protein [Rhodococcus equi]
gi|10801085|dbj|BAB16639.1| conjugal transfer protein [Rhodococcus equi]
Length=1367
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/106 (34%), Positives = 50/106 (48%), Gaps = 9/106 (8%)
Query 34 VRNGNRWRVIAVDTEHHRIAARRLGDGARAAFSGDYLHEHITHGYAITVHASQGTTAHST 93
V+NG+ W V + + + DG + DY+ +++ GYA TVH SQG T S
Sbjct 795 VKNGDLWTVSEIGEDGSLRLRNNVSDG-EVTVAADYITDNVQLGYATTVHRSQGMTVGSC 853
Query 94 HAVLGDNTSRATLYVAMTPARESNTAYLCERTAGEGARVDLAGWDL 139
H + N R +LYVAMT + +N Y A +L WD
Sbjct 854 HVLAAANMDRQSLYVAMTRGKNTNIVY--------AANDELPDWDF 891
>gi|297718587|gb|ADI50202.1| putative conjugal transfer protein TraA [Rhodococcus equi]
Length=1422
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/106 (34%), Positives = 50/106 (48%), Gaps = 9/106 (8%)
Query 34 VRNGNRWRVIAVDTEHHRIAARRLGDGARAAFSGDYLHEHITHGYAITVHASQGTTAHST 93
V+NG+ W V + + + DG + DY+ +++ GYA TVH SQG T S
Sbjct 850 VKNGDLWTVSEIGEDGSLRLRNNVSDG-EVTVAADYITDNVQLGYATTVHRSQGMTVGSC 908
Query 94 HAVLGDNTSRATLYVAMTPARESNTAYLCERTAGEGARVDLAGWDL 139
H + N R +LYVAMT + +N Y A +L WD
Sbjct 909 HVLAAANMDRQSLYVAMTRGKNTNIVY--------AANDELPDWDF 946
>gi|296165985|ref|ZP_06848439.1| exonuclease V subunit alpha [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295898647|gb|EFG78199.1| exonuclease V subunit alpha [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=1968
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/113 (43%), Positives = 58/113 (52%), Gaps = 9/113 (7%)
Query 16 AGDVGYSVEREN-----LPADDPVRNGNRWRVIAVDTEHHRIAARRLGDGARAAFSGDYL 70
AGDV S REN L D VRNG R+ V V + IA L G R DY+
Sbjct 878 AGDVIRS--RENARGLRLGRTDYVRNGYRYTVHRVRADGSVIATH-LDSGQRITLPADYV 934
Query 71 HEHITHGYAITVHASQGTTA-HSTHAVLGDNTSRATLYVAMTPARESNTAYLC 122
H+T GYA TV +QG TA ++ H V G + +R LYVA+T R N YL
Sbjct 935 KTHVTLGYAATVDLTQGLTAQYACHIVGGGHLTRQLLYVALTRGRVENHIYLS 987
>gi|239916605|ref|YP_002956163.1| conjugative relaxase domain protein, TrwC/TraI family [Micrococcus
luteus NCTC 2665]
gi|239837812|gb|ACS29609.1| conjugative relaxase domain protein, TrwC/TraI family [Micrococcus
luteus NCTC 2665]
Length=1174
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/94 (38%), Positives = 48/94 (52%), Gaps = 5/94 (5%)
Query 32 DPVRNGNRWRVIAVDTEHH---RIAARRLGDGARAAFSGDYLHEHITHGYAITVHASQGT 88
D VRNG+ W V V + R A RR G Y+ +H+ GYAIT H +QG
Sbjct 797 DWVRNGDAWTVTGVRDDGSVTIRKAGRRFG--GSLVLPTAYVTDHVDLGYAITAHRAQGV 854
Query 89 TAHSTHAVLGDNTSRATLYVAMTPARESNTAYLC 122
T + H ++ T+R YVAMT + +N AY+
Sbjct 855 TVDTAHVLVEPTTTRENFYVAMTRGKHANRAYVI 888
>gi|256824511|ref|YP_003148471.1| TrwC relaxase [Kytococcus sedentarius DSM 20547]
gi|256687904|gb|ACV05706.1| TrwC relaxase [Kytococcus sedentarius DSM 20547]
Length=1184
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/102 (37%), Positives = 50/102 (50%), Gaps = 5/102 (4%)
Query 32 DPVRNGNRWRVIAVDTEHH---RIAARRLGDGARAAFSGDYLHEHITHGYAITVHASQGT 88
D VRNG+ W + V + R RR G Y+ +H+ GYAIT H +QG
Sbjct 805 DWVRNGDTWTITGVRDDGSVTIRKTGRRFG--GTIVLPTTYVADHVDLGYAITAHRAQGV 862
Query 89 TAHSTHAVLGDNTSRATLYVAMTPARESNTAYLCERTAGEGA 130
T + H ++ T+R YVAMT + SN AY+ A E A
Sbjct 863 TVDTAHVLVEPTTTRENFYVAMTRGKHSNRAYVILDRADEHA 904
Lambda K H
0.317 0.130 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 142560794112
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40