BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2313c
Length=284
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609450|ref|NP_216829.1| hypothetical protein Rv2313c [Mycob... 568 3e-160
gi|340627323|ref|YP_004745775.1| hypothetical protein MCAN_23441... 566 1e-159
gi|289570443|ref|ZP_06450670.1| hypothetical protein TBJG_00810 ... 540 1e-151
gi|167969861|ref|ZP_02552138.1| hypothetical protein MtubH3_1828... 500 8e-140
gi|296166357|ref|ZP_06848792.1| conserved hypothetical protein [... 424 8e-117
gi|240170960|ref|ZP_04749619.1| hypothetical protein MkanA1_1673... 423 1e-116
gi|183983593|ref|YP_001851884.1| hypothetical protein MMAR_3614 ... 414 7e-114
gi|254774811|ref|ZP_05216327.1| hypothetical protein MaviaA2_090... 407 9e-112
gi|254819404|ref|ZP_05224405.1| hypothetical protein MintA_05742... 405 5e-111
gi|41408185|ref|NP_961021.1| hypothetical protein MAP2087c [Myco... 404 8e-111
gi|118466572|ref|YP_881308.1| hypothetical protein MAV_2093 [Myc... 403 2e-110
gi|342857433|ref|ZP_08714089.1| hypothetical protein MCOL_01115 ... 375 5e-102
gi|333990240|ref|YP_004522854.1| hypothetical protein JDM601_160... 312 3e-83
gi|126436016|ref|YP_001071707.1| hypothetical protein Mjls_3438 ... 301 9e-80
gi|108800393|ref|YP_640590.1| hypothetical protein Mmcs_3427 [My... 300 2e-79
gi|120404760|ref|YP_954589.1| hypothetical protein Mvan_3802 [My... 265 4e-69
gi|145223321|ref|YP_001133999.1| hypothetical protein Mflv_2734 ... 263 3e-68
gi|118473828|ref|YP_888729.1| hypothetical protein MSMEG_4456 [M... 248 6e-64
gi|312138779|ref|YP_004006115.1| hypothetical protein REQ_13430 ... 219 4e-55
gi|325676524|ref|ZP_08156202.1| hypothetical protein HMPREF0724_... 218 6e-55
gi|326384917|ref|ZP_08206591.1| hypothetical protein SCNU_18322 ... 203 2e-50
gi|254283172|ref|ZP_04958140.1| conserved hypothetical protein [... 88.6 1e-15
gi|119476633|ref|ZP_01616943.1| hypothetical protein GP2143_0335... 77.8 2e-12
gi|213649427|ref|ZP_03379480.1| hypothetical protein SentesTy_20... 67.8 2e-09
gi|342857705|ref|ZP_08714361.1| carboxymuconolactone decarboxyla... 62.0 9e-08
gi|331699601|ref|YP_004335840.1| carboxymuconolactone decarboxyl... 60.8 2e-07
gi|241113093|ref|YP_002972928.1| alkylhydroperoxidase-like prote... 54.3 2e-05
gi|54295318|ref|YP_127733.1| hypothetical protein lpl2403 [Legio... 52.0 1e-04
gi|52842691|ref|YP_096490.1| hypothetical protein lpg2483 [Legio... 52.0 1e-04
gi|148360064|ref|YP_001251271.1| hypothetical protein LPC_1995 [... 51.6 1e-04
gi|114776676|ref|ZP_01451719.1| hypothetical protein SPV1_10691 ... 51.6 1e-04
gi|299138127|ref|ZP_07031307.1| alkylhydroperoxidase like protei... 50.4 3e-04
gi|283785020|ref|YP_003364885.1| decarboxylase [Citrobacter rode... 50.4 3e-04
gi|331696071|ref|YP_004332310.1| carboxymuconolactone decarboxyl... 49.7 5e-04
gi|292491788|ref|YP_003527227.1| alkylhydroperoxidase like prote... 48.9 8e-04
gi|170736995|ref|YP_001778255.1| alkylhydroperoxidase [Burkholde... 48.9 9e-04
gi|334145269|ref|YP_004538479.1| carboxymuconolactone decarboxyl... 48.9 0.001
gi|344942745|ref|ZP_08782032.1| alkylhydroperoxidase like protei... 48.5 0.001
gi|254480184|ref|ZP_05093432.1| hypothetical protein GPB2148_322... 48.5 0.001
gi|170696694|ref|ZP_02887810.1| alkylhydroperoxidase like protei... 48.1 0.001
gi|225873453|ref|YP_002754912.1| 4-carboxymuconolactone decarbox... 48.1 0.001
gi|107027594|ref|YP_625105.1| alkylhydroperoxidase AhpD core [Bu... 48.1 0.002
gi|322831493|ref|YP_004211520.1| alkylhydroperoxidase like prote... 47.8 0.002
gi|187924397|ref|YP_001896039.1| alkylhydroperoxidase like prote... 47.4 0.002
gi|254255206|ref|ZP_04948522.1| hypothetical protein BDAG_04535 ... 47.4 0.002
gi|340786104|ref|YP_004751569.1| hypothetical protein CFU_0914 [... 47.4 0.003
gi|172059087|ref|YP_001806739.1| alkylhydroperoxidase [Burkholde... 47.0 0.003
gi|145299731|ref|YP_001142572.1| hypothetical protein ASA_2808 [... 47.0 0.003
gi|254249622|ref|ZP_04942942.1| hypothetical protein BCPG_04487 ... 46.6 0.004
gi|334704325|ref|ZP_08520191.1| hypothetical protein AcavA_09823... 46.6 0.004
>gi|15609450|ref|NP_216829.1| hypothetical protein Rv2313c [Mycobacterium tuberculosis H37Rv]
gi|15841818|ref|NP_336855.1| hypothetical protein MT2376 [Mycobacterium tuberculosis CDC1551]
gi|31793496|ref|NP_855989.1| hypothetical protein Mb2340c [Mycobacterium bovis AF2122/97]
77 more sequence titles
Length=284
Score = 568 bits (1464), Expect = 3e-160, Method: Compositional matrix adjust.
Identities = 283/284 (99%), Positives = 284/284 (100%), Gaps = 0/284 (0%)
Query 1 VPAPVSVRDDLCRLVALSPGDGRIAGLVRQVCARALSLPSLPCEVAVNEPESPAEAVVAE 60
+PAPVSVRDDLCRLVALSPGDGRIAGLVRQVCARALSLPSLPCEVAVNEPESPAEAVVAE
Sbjct 1 MPAPVSVRDDLCRLVALSPGDGRIAGLVRQVCARALSLPSLPCEVAVNEPESPAEAVVAE 60
Query 61 FAEQFSVDVSAITGEQRSLLWTHLGEDAFGAVVAMYIADFVPRVRAGLEALGVGKEYLGW 120
FAEQFSVDVSAITGEQRSLLWTHLGEDAFGAVVAMYIADFVPRVRAGLEALGVGKEYLGW
Sbjct 61 FAEQFSVDVSAITGEQRSLLWTHLGEDAFGAVVAMYIADFVPRVRAGLEALGVGKEYLGW 120
Query 121 VTGPISWDHNTDLSAAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSA 180
VTGPISWDHNTDLSAAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSA
Sbjct 121 VTGPISWDHNTDLSAAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSA 180
Query 181 LDAGGSETLYGEIERFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAVEVRSRFSDDEA 240
LDAGGSETLYGEIERFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAVEVRSRFSDDEA
Sbjct 181 LDAGGSETLYGEIERFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAVEVRSRFSDDEA 240
Query 241 VELTFDIMRNASNKVAVSLGADAPRVQQGTERYRIGLDGQTVFG 284
VELTFDIMRNASNKVAVSLGADAPRVQQGTERYRIGLDGQTVFG
Sbjct 241 VELTFDIMRNASNKVAVSLGADAPRVQQGTERYRIGLDGQTVFG 284
>gi|340627323|ref|YP_004745775.1| hypothetical protein MCAN_23441 [Mycobacterium canettii CIPT
140010059]
gi|340005513|emb|CCC44675.1| hypothetical protein MCAN_23441 [Mycobacterium canettii CIPT
140010059]
Length=284
Score = 566 bits (1459), Expect = 1e-159, Method: Compositional matrix adjust.
Identities = 282/284 (99%), Positives = 283/284 (99%), Gaps = 0/284 (0%)
Query 1 VPAPVSVRDDLCRLVALSPGDGRIAGLVRQVCARALSLPSLPCEVAVNEPESPAEAVVAE 60
+PAPVSVRDDLCRLVALSPGDGRIAGLVRQVCARALSLPSLPCEVAVNEPESPAEAVVAE
Sbjct 1 MPAPVSVRDDLCRLVALSPGDGRIAGLVRQVCARALSLPSLPCEVAVNEPESPAEAVVAE 60
Query 61 FAEQFSVDVSAITGEQRSLLWTHLGEDAFGAVVAMYIADFVPRVRAGLEALGVGKEYLGW 120
FAEQFSVDVSAITGEQRSLLWTHLGEDAFGAVVAMYIADFVPRVRAGLEALGVGKEYLGW
Sbjct 61 FAEQFSVDVSAITGEQRSLLWTHLGEDAFGAVVAMYIADFVPRVRAGLEALGVGKEYLGW 120
Query 121 VTGPISWDHNTDLSAAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSA 180
VTGPISWDHNTDLSAAVFNGFLPAVARMRALDPVTSELVRLRGAA HNCRVCKSLREVSA
Sbjct 121 VTGPISWDHNTDLSAAVFNGFLPAVARMRALDPVTSELVRLRGAAHHNCRVCKSLREVSA 180
Query 181 LDAGGSETLYGEIERFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAVEVRSRFSDDEA 240
LDAGGSETLYGEIERFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAVEVRSRFSDDEA
Sbjct 181 LDAGGSETLYGEIERFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAVEVRSRFSDDEA 240
Query 241 VELTFDIMRNASNKVAVSLGADAPRVQQGTERYRIGLDGQTVFG 284
VELTFDIMRNASNKVAVSLGADAPRVQQGTERYRIGLDGQTVFG
Sbjct 241 VELTFDIMRNASNKVAVSLGADAPRVQQGTERYRIGLDGQTVFG 284
>gi|289570443|ref|ZP_06450670.1| hypothetical protein TBJG_00810 [Mycobacterium tuberculosis T17]
gi|289544197|gb|EFD47845.1| hypothetical protein TBJG_00810 [Mycobacterium tuberculosis T17]
Length=276
Score = 540 bits (1390), Expect = 1e-151, Method: Compositional matrix adjust.
Identities = 269/271 (99%), Positives = 270/271 (99%), Gaps = 0/271 (0%)
Query 1 VPAPVSVRDDLCRLVALSPGDGRIAGLVRQVCARALSLPSLPCEVAVNEPESPAEAVVAE 60
+PAPVSVRDDLCRLVALSPGDGRIAGLVRQVCARALSLPSLPCEVAVNEPESPAEAVVAE
Sbjct 1 MPAPVSVRDDLCRLVALSPGDGRIAGLVRQVCARALSLPSLPCEVAVNEPESPAEAVVAE 60
Query 61 FAEQFSVDVSAITGEQRSLLWTHLGEDAFGAVVAMYIADFVPRVRAGLEALGVGKEYLGW 120
FAEQFSVDVSAITGEQRSLLWTHLGEDAFGAVVAMYIADFVPRVRAGLEALGVGKEYLGW
Sbjct 61 FAEQFSVDVSAITGEQRSLLWTHLGEDAFGAVVAMYIADFVPRVRAGLEALGVGKEYLGW 120
Query 121 VTGPISWDHNTDLSAAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSA 180
VTGPISWDHNTDLSAAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSA
Sbjct 121 VTGPISWDHNTDLSAAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSA 180
Query 181 LDAGGSETLYGEIERFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAVEVRSRFSDDEA 240
LDAGGSETLYGEIERFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAVEVRSRFSDDEA
Sbjct 181 LDAGGSETLYGEIERFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAVEVRSRFSDDEA 240
Query 241 VELTFDIMRNASNKVAVSLGADAPRVQQGTE 271
VELTFDIMRNASNKVAVSLGADAPRVQQGT
Sbjct 241 VELTFDIMRNASNKVAVSLGADAPRVQQGTN 271
>gi|167969861|ref|ZP_02552138.1| hypothetical protein MtubH3_18284 [Mycobacterium tuberculosis
H37Ra]
Length=263
Score = 500 bits (1288), Expect = 8e-140, Method: Compositional matrix adjust.
Identities = 251/255 (99%), Positives = 252/255 (99%), Gaps = 0/255 (0%)
Query 15 VALSPGDGRIAGLVRQVCARALSLPSLPCEVAVNEPESPAEAVVAEFAEQFSVDVSAITG 74
+ALSPGDGRIAGLVRQVCARALSLPSLPCEVAVNEPESPAEAVVAEFAEQFSVDVSAITG
Sbjct 1 MALSPGDGRIAGLVRQVCARALSLPSLPCEVAVNEPESPAEAVVAEFAEQFSVDVSAITG 60
Query 75 EQRSLLWTHLGEDAFGAVVAMYIADFVPRVRAGLEALGVGKEYLGWVTGPISWDHNTDLS 134
EQRSLLWTHLGEDAFGAVVAMYIADFVPRVRAGLEALGVGKEYLGWVTGPISWDHNTDLS
Sbjct 61 EQRSLLWTHLGEDAFGAVVAMYIADFVPRVRAGLEALGVGKEYLGWVTGPISWDHNTDLS 120
Query 135 AAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSALDAGGSETLYGEIE 194
AAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSALDAGGSETLYGEIE
Sbjct 121 AAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSALDAGGSETLYGEIE 180
Query 195 RFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAVEVRSRFSDDEAVELTFDIMRNASNK 254
RFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAVEVRSRFSDDEAVELTFDIMRNASNK
Sbjct 181 RFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAVEVRSRFSDDEAVELTFDIMRNASNK 240
Query 255 VAVSLGADAPRVQQG 269
VAVSLGADAPR G
Sbjct 241 VAVSLGADAPRGAAG 255
>gi|296166357|ref|ZP_06848792.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295898267|gb|EFG77838.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=288
Score = 424 bits (1090), Expect = 8e-117, Method: Compositional matrix adjust.
Identities = 217/286 (76%), Positives = 239/286 (84%), Gaps = 4/286 (1%)
Query 3 APVSVRDD-LCRLVALSPG---DGRIAGLVRQVCARALSLPSLPCEVAVNEPESPAEAVV 58
APVSVR+D L RLVALSPG D R+A L+R+ CA+ LSLP LP V V PES E VV
Sbjct 3 APVSVREDQLARLVALSPGSPADARLAALIRRTCAQTLSLPPLPTAVEVGAPESKDELVV 62
Query 59 AEFAEQFSVDVSAITGEQRSLLWTHLGEDAFGAVVAMYIADFVPRVRAGLEALGVGKEYL 118
EFAEQFS DVSA+TGEQRS LG+ AFG VV MYIADFVPRVRAGLEALGVG +YL
Sbjct 63 VEFAEQFSADVSAVTGEQRSRFVKRLGDRAFGVVVLMYIADFVPRVRAGLEALGVGAQYL 122
Query 119 GWVTGPISWDHNTDLSAAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREV 178
GWV G ++WDH T+ S VF+ FLPAVARMRALDPVTSELVRLRGAAQHNCR+CKSLRE
Sbjct 123 GWVDGSLAWDHTTEPSGLVFDDFLPAVARMRALDPVTSELVRLRGAAQHNCRLCKSLREG 182
Query 179 SALDAGGSETLYGEIERFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAVEVRSRFSDD 238
+ALDAGGSETLY EI+RF++S LLD R KAALRYADALIWTPAHLA D A EVRSRFS+
Sbjct 183 TALDAGGSETLYDEIDRFESSSLLDDRVKAALRYADALIWTPAHLAADDAAEVRSRFSEA 242
Query 239 EAVELTFDIMRNASNKVAVSLGADAPRVQQGTERYRIGLDGQTVFG 284
EAVELTFDIMRNASNK+AV+LGADAPRV+QGTERY +G DGQTVFG
Sbjct 243 EAVELTFDIMRNASNKIAVALGADAPRVEQGTERYLLGADGQTVFG 288
>gi|240170960|ref|ZP_04749619.1| hypothetical protein MkanA1_16738 [Mycobacterium kansasii ATCC
12478]
Length=282
Score = 423 bits (1088), Expect = 1e-116, Method: Compositional matrix adjust.
Identities = 214/280 (77%), Positives = 238/280 (85%), Gaps = 1/280 (0%)
Query 6 SVRDDLCRLVALSPGDGRIAGLVRQVCARALSLPSLPCEVAVNEPESPAEAVVAEFAEQF 65
+V D L RL+A SPGDGR+A LVR+VCAR LSLP++P EV V EP S AE VAEFAEQF
Sbjct 3 AVGDGLARLIAWSPGDGRMASLVRRVCARTLSLPAVPSEVTVGEPASEAERSVAEFAEQF 62
Query 66 SVDVSAITGEQRSLLWTHLGEDAFGAVVAMYIADFVPRVRAGLEALGVGKEYLGWVTGPI 125
SVDVS I+ EQRS L LG+DAFGAVV+++IADFVPRVRAGLEALG+G +YLGWV PI
Sbjct 63 SVDVSQISAEQRSDLLKQLGDDAFGAVVSIFIADFVPRVRAGLEALGIGSQYLGWVREPI 122
Query 126 SWDHNTDLSAAV-FNGFLPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSALDAG 184
W+H V FN FLPAVARMRALDPVTSELVRLRGAA HNCR+C+SLRE +ALDAG
Sbjct 123 RWNHAATAGPGVLFNDFLPAVARMRALDPVTSELVRLRGAAAHNCRLCRSLREGTALDAG 182
Query 185 GSETLYGEIERFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAVEVRSRFSDDEAVELT 244
GS+TLY EIERF+TS+LLD AKAALRY DALIWTPAHLAVDVA EVRSRFS+ EA+ELT
Sbjct 183 GSDTLYDEIERFETSILLDDCAKAALRYTDALIWTPAHLAVDVAAEVRSRFSEAEAIELT 242
Query 245 FDIMRNASNKVAVSLGADAPRVQQGTERYRIGLDGQTVFG 284
FDIMRNASNK+AVSLGADAPRV+QGTERY IG DGQTVFG
Sbjct 243 FDIMRNASNKIAVSLGADAPRVEQGTERYLIGTDGQTVFG 282
>gi|183983593|ref|YP_001851884.1| hypothetical protein MMAR_3614 [Mycobacterium marinum M]
gi|183176919|gb|ACC42029.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=284
Score = 414 bits (1065), Expect = 7e-114, Method: Compositional matrix adjust.
Identities = 218/281 (78%), Positives = 240/281 (86%), Gaps = 2/281 (0%)
Query 3 APVSVRDDLCRLVALSPGDGRIAGLVRQVCARALSLPSLPCEVAVNEPESPAEAVVAEFA 62
APV D L RLV +SPGDGRIAGLVRQVCAR L LP+LP EV V EP+S AEAVVAEFA
Sbjct 5 APVG--DALARLVVVSPGDGRIAGLVRQVCARTLGLPALPAEVVVAEPQSAAEAVVAEFA 62
Query 63 EQFSVDVSAITGEQRSLLWTHLGEDAFGAVVAMYIADFVPRVRAGLEALGVGKEYLGWVT 122
EQFS DVS+I+ EQRS L+ LG GAVV+++IADFVPRVRAGL+ALGVG++YLGWV
Sbjct 63 EQFSADVSSISAEQRSRLFKQLGNSTLGAVVSIFIADFVPRVRAGLQALGVGRDYLGWVG 122
Query 123 GPISWDHNTDLSAAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSALD 182
PI WDH+TD S VFN FLPAVARMRALDPV SELVRLRGAAQHNCR+CKSLRE +ALD
Sbjct 123 APIEWDHSTDPSQVVFNEFLPAVARMRALDPVISELVRLRGAAQHNCRLCKSLRESTALD 182
Query 183 AGGSETLYGEIERFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAVEVRSRFSDDEAVE 242
AGGSE LYGEIE F+ SV+LD RAKAALRY D LIWTPAHLAVD A EVRSRFS+ EA+E
Sbjct 183 AGGSEPLYGEIEGFEHSVVLDDRAKAALRYTDTLIWTPAHLAVDDAAEVRSRFSEAEAIE 242
Query 243 LTFDIMRNASNKVAVSLGADAPRVQQGTERYRIGLDGQTVF 283
LT DIMRNASNK+AVSLGADAPRV++GTERYRIG DGQTVF
Sbjct 243 LTLDIMRNASNKIAVSLGADAPRVERGTERYRIGADGQTVF 283
>gi|254774811|ref|ZP_05216327.1| hypothetical protein MaviaA2_09090 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=288
Score = 407 bits (1046), Expect = 9e-112, Method: Compositional matrix adjust.
Identities = 211/285 (75%), Positives = 232/285 (82%), Gaps = 4/285 (1%)
Query 3 APVSVRDD-LCRLVAL---SPGDGRIAGLVRQVCARALSLPSLPCEVAVNEPESPAEAVV 58
APVS+R+D L RLVA+ SP + R+A L+R+VCA+ SLP LP + V EPES EA V
Sbjct 3 APVSLREDQLTRLVAVFPGSPSEARVAALIRRVCAQTSSLPPLPAPMEVGEPESETEAAV 62
Query 59 AEFAEQFSVDVSAITGEQRSLLWTHLGEDAFGAVVAMYIADFVPRVRAGLEALGVGKEYL 118
AEFAEQFS DVSAIT QRS L LG+ FG VV MYIADFVPRVRAGLEALGVG YL
Sbjct 63 AEFAEQFSADVSAITHAQRSRLSKQLGDRTFGVVVQMYIADFVPRVRAGLEALGVGSRYL 122
Query 119 GWVTGPISWDHNTDLSAAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREV 178
GW++GPISWD+ +D S VFN FL AVARMRALDPVTSELVRLRGAAQH+CR+C SLRE
Sbjct 123 GWLSGPISWDYGSDPSDLVFNDFLIAVARMRALDPVTSELVRLRGAAQHHCRLCNSLREG 182
Query 179 SALDAGGSETLYGEIERFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAVEVRSRFSDD 238
SALDAGGSETLY EIERF++S LLD RAKAALRY DALIWTPAHL D EVRSRFS+
Sbjct 183 SALDAGGSETLYEEIERFESSGLLDERAKAALRYTDALIWTPAHLVADDVAEVRSRFSEA 242
Query 239 EAVELTFDIMRNASNKVAVSLGADAPRVQQGTERYRIGLDGQTVF 283
EAVELTFDIMRNASNKVAVSL ADAPRV+ GT+RY IG DGQTVF
Sbjct 243 EAVELTFDIMRNASNKVAVSLAADAPRVENGTQRYLIGADGQTVF 287
>gi|254819404|ref|ZP_05224405.1| hypothetical protein MintA_05742 [Mycobacterium intracellulare
ATCC 13950]
Length=288
Score = 405 bits (1040), Expect = 5e-111, Method: Compositional matrix adjust.
Identities = 213/285 (75%), Positives = 230/285 (81%), Gaps = 4/285 (1%)
Query 3 APVSVRDD-LCRLVALSPGDGRIAG---LVRQVCARALSLPSLPCEVAVNEPESPAEAVV 58
APVSVR+D L RLVAL P A L+R+VCA+ +SLP LP V V EPES AEA V
Sbjct 3 APVSVREDQLTRLVALFPAAPADARIAALIRRVCAQTVSLPPLPSAVEVGEPESDAEAAV 62
Query 59 AEFAEQFSVDVSAITGEQRSLLWTHLGEDAFGAVVAMYIADFVPRVRAGLEALGVGKEYL 118
+FAEQFS DV+AIT EQRS L HLG+ FG VV MYIADFVPRVRAGLEALGVG +YL
Sbjct 63 VDFAEQFSADVAAITAEQRSRLSKHLGDRTFGVVVQMYIADFVPRVRAGLEALGVGSQYL 122
Query 119 GWVTGPISWDHNTDLSAAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREV 178
GW GPI+WDH TD S VFN FL AVARMRALDPVTSELVRLRGAAQHNCR+C SLRE
Sbjct 123 GWAAGPINWDHTTDPSDLVFNDFLIAVARMRALDPVTSELVRLRGAAQHNCRLCNSLREG 182
Query 179 SALDAGGSETLYGEIERFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAVEVRSRFSDD 238
ALDAGGSETLY EIERF++S LLD RAKAALRYAD LIWTPAHLA D A EVRSRFS+
Sbjct 183 GALDAGGSETLYEEIERFESSGLLDDRAKAALRYADGLIWTPAHLAADDAAEVRSRFSEA 242
Query 239 EAVELTFDIMRNASNKVAVSLGADAPRVQQGTERYRIGLDGQTVF 283
E+VELTFDIMRNASNKVAVSLGADAPRV+ GTERY I +G TVF
Sbjct 243 ESVELTFDIMRNASNKVAVSLGADAPRVESGTERYLIDAEGHTVF 287
>gi|41408185|ref|NP_961021.1| hypothetical protein MAP2087c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41396540|gb|AAS04404.1| hypothetical protein MAP_2087c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336461703|gb|EGO40565.1| hypothetical protein MAPs_27920 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=288
Score = 404 bits (1038), Expect = 8e-111, Method: Compositional matrix adjust.
Identities = 210/285 (74%), Positives = 230/285 (81%), Gaps = 4/285 (1%)
Query 3 APVSVRDD-LCRLVAL---SPGDGRIAGLVRQVCARALSLPSLPCEVAVNEPESPAEAVV 58
APVS+R+D L RLVA+ SP + R+A L+R+VCA+ SLP LP + V EPES EA V
Sbjct 3 APVSLREDQLTRLVAVFPGSPSEARVAALIRRVCAQTSSLPPLPAPMEVGEPESETEAAV 62
Query 59 AEFAEQFSVDVSAITGEQRSLLWTHLGEDAFGAVVAMYIADFVPRVRAGLEALGVGKEYL 118
AEFAEQFS DVSAIT QRS L LG+ FG VV MYIADFV RVRAGLEALGVG YL
Sbjct 63 AEFAEQFSADVSAITHAQRSRLSKQLGDRTFGVVVQMYIADFVLRVRAGLEALGVGSRYL 122
Query 119 GWVTGPISWDHNTDLSAAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREV 178
GW++GPISWDH +D S VFN FL VARMRALDPVTSELVRLRGAAQH+CR+C SLRE
Sbjct 123 GWLSGPISWDHGSDPSDLVFNDFLIVVARMRALDPVTSELVRLRGAAQHHCRLCNSLREG 182
Query 179 SALDAGGSETLYGEIERFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAVEVRSRFSDD 238
SALDAGGSETLY EIERF++S LLD RAKAALRY DALIWTPAHL D EVRSRFS+
Sbjct 183 SALDAGGSETLYEEIERFESSGLLDERAKAALRYTDALIWTPAHLVADDVAEVRSRFSEA 242
Query 239 EAVELTFDIMRNASNKVAVSLGADAPRVQQGTERYRIGLDGQTVF 283
EAVELTFDIMRNASNKVAVSL ADAPRV+ GT+RY IG DGQTVF
Sbjct 243 EAVELTFDIMRNASNKVAVSLAADAPRVENGTQRYLIGADGQTVF 287
>gi|118466572|ref|YP_881308.1| hypothetical protein MAV_2093 [Mycobacterium avium 104]
gi|118167859|gb|ABK68756.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=288
Score = 403 bits (1035), Expect = 2e-110, Method: Compositional matrix adjust.
Identities = 209/285 (74%), Positives = 231/285 (82%), Gaps = 4/285 (1%)
Query 3 APVSVRDD-LCRLVAL---SPGDGRIAGLVRQVCARALSLPSLPCEVAVNEPESPAEAVV 58
APVS+R+D L RLVA+ SP + R+A L+R+VCA+ SLP LP + V EPES EA V
Sbjct 3 APVSLREDQLTRLVAVFPGSPSEARVAALIRRVCAQTSSLPPLPAPMEVGEPESETEAAV 62
Query 59 AEFAEQFSVDVSAITGEQRSLLWTHLGEDAFGAVVAMYIADFVPRVRAGLEALGVGKEYL 118
AEFAEQFS DVSAIT QRS L LG+ FG VV MYIADFVPRVRAGL+AL VG YL
Sbjct 63 AEFAEQFSADVSAITHAQRSRLSKQLGDRTFGVVVQMYIADFVPRVRAGLDALEVGSRYL 122
Query 119 GWVTGPISWDHNTDLSAAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREV 178
GW++GPISWD+ +D S VFN FL AVARMRALDPVTSELVRLRGAAQH+CR+C SLRE
Sbjct 123 GWLSGPISWDYGSDPSDLVFNDFLIAVARMRALDPVTSELVRLRGAAQHHCRLCNSLREG 182
Query 179 SALDAGGSETLYGEIERFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAVEVRSRFSDD 238
SALDAGGSETLY EIERF++S LLD RAKAALRY DALIWTPAHL D EVRSRFS+
Sbjct 183 SALDAGGSETLYEEIERFESSGLLDERAKAALRYTDALIWTPAHLVADDVAEVRSRFSEA 242
Query 239 EAVELTFDIMRNASNKVAVSLGADAPRVQQGTERYRIGLDGQTVF 283
EAVELTFDIMRNASNKVAVSL ADAPRV+ GT+RY IG DGQTVF
Sbjct 243 EAVELTFDIMRNASNKVAVSLAADAPRVENGTQRYLIGADGQTVF 287
>gi|342857433|ref|ZP_08714089.1| hypothetical protein MCOL_01115 [Mycobacterium colombiense CECT
3035]
gi|342134766|gb|EGT87932.1| hypothetical protein MCOL_01115 [Mycobacterium colombiense CECT
3035]
Length=261
Score = 375 bits (962), Expect = 5e-102, Method: Compositional matrix adjust.
Identities = 194/260 (75%), Positives = 215/260 (83%), Gaps = 0/260 (0%)
Query 24 IAGLVRQVCARALSLPSLPCEVAVNEPESPAEAVVAEFAEQFSVDVSAITGEQRSLLWTH 83
+A LVR+VCA+ +SLP LP + V EP+S A VAEFAEQFS DV+++T EQR+ LW H
Sbjct 1 MAALVRRVCAQTMSLPPLPAKAGVGEPDSDVAAAVAEFAEQFSADVASVTAEQRARLWKH 60
Query 84 LGEDAFGAVVAMYIADFVPRVRAGLEALGVGKEYLGWVTGPISWDHNTDLSAAVFNGFLP 143
LG+D F VV MYIADFVPRVRAGLEALGVG +YLGWV PI+WD T+ S AVFN FL
Sbjct 61 LGDDTFEVVVQMYIADFVPRVRAGLEALGVGAQYLGWVADPITWDRTTNPSYAVFNEFLI 120
Query 144 AVARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSALDAGGSETLYGEIERFDTSVLLD 203
AVARMRALDP+TSELVRLRGAAQHNCR+C SLRE ALDAGGSETLY EI RF++S LLD
Sbjct 121 AVARMRALDPLTSELVRLRGAAQHNCRLCNSLREGGALDAGGSETLYEEIARFESSSLLD 180
Query 204 VRAKAALRYADALIWTPAHLAVDVAVEVRSRFSDDEAVELTFDIMRNASNKVAVSLGADA 263
RAKAALRYADALIWTPAHLA D EVRSRFS+ EAVELTFDIMRNASNKVAVSLGADA
Sbjct 181 GRAKAALRYADALIWTPAHLAADDVAEVRSRFSEAEAVELTFDIMRNASNKVAVSLGADA 240
Query 264 PRVQQGTERYRIGLDGQTVF 283
PRV GTERY + DG+TVF
Sbjct 241 PRVDTGTERYLLAADGRTVF 260
>gi|333990240|ref|YP_004522854.1| hypothetical protein JDM601_1600 [Mycobacterium sp. JDM601]
gi|333486208|gb|AEF35600.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=272
Score = 312 bits (800), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 171/274 (63%), Positives = 200/274 (73%), Gaps = 8/274 (2%)
Query 10 DLCRLVALSPGDGRIAGLVRQVCARALSLPSLPCEVAVNEPESPAEAVVAEFAEQFSVDV 69
+L LVALS G + VR VCAR L LP LP EV + A+ VAEFAEQFSVDV
Sbjct 6 ELNALVALS--GGAVGAAVRAVCARTLGLPPLPAEV--DGDRLGADPAVAEFAEQFSVDV 61
Query 70 SAITGEQRSLLWTHLGEDAFGAVVAMYIADFVPRVRAGLEALGVGKEYLGWVTGPISWDH 129
S IT +QR L LG+ AF AVV MYIADFVPRVRAGL A+GV + W + I WDH
Sbjct 62 SVITEDQRDRLRDALGDAAFDAVVQMYIADFVPRVRAGLAAVGVS---VSW-SEDIVWDH 117
Query 130 NTDLSAAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSALDAGGSETL 189
++ A+FN F+PAVAR+R+LD VTSE+VRLRGAAQHNCR+CKSLRE +ALDAGGSE L
Sbjct 118 SSHPGEALFNRFMPAVARLRSLDAVTSEVVRLRGAAQHNCRLCKSLRETTALDAGGSERL 177
Query 190 YGEIERFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAVEVRSRFSDDEAVELTFDIMR 249
Y EIERF++S +L KAALRY DALIWTPA + DVA VR F+DD+ +ELT D+MR
Sbjct 178 YDEIERFESSRMLSEPQKAALRYVDALIWTPARIDADVAAGVRRHFTDDQIIELTLDVMR 237
Query 250 NASNKVAVSLGADAPRVQQGTERYRIGLDGQTVF 283
NA NK+AVSLGADAPRV GTE Y + +GQTVF
Sbjct 238 NAGNKIAVSLGADAPRVADGTEPYLLNAEGQTVF 271
>gi|126436016|ref|YP_001071707.1| hypothetical protein Mjls_3438 [Mycobacterium sp. JLS]
gi|126235816|gb|ABN99216.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=278
Score = 301 bits (770), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 159/273 (59%), Positives = 198/273 (73%), Gaps = 3/273 (1%)
Query 11 LCRLVALSPGDGRIAGLVRQVCARALSLPSLPCEVAVNEPESPAEAVVAEFAEQFSVDVS 70
L LVA S GD R+ ++R C RAL L LP EV + + +S AE+VVA FAEQF+ DV+
Sbjct 5 LSALVATSSGDLRLDTVIRLTCGRALRLLPLPVEVDLFDGKSDAESVVAAFAEQFATDVT 64
Query 71 AITGEQRSLLWTHLGEDAFGAVVAMYIADFVPRVRAGLEALGVGKEYLGWVTGPISWDHN 130
++ QR+ T LG+ AF A++IADFVPRV AGLEALG+G P+ WDH
Sbjct 65 GVSDNQRTCFVTALGDRAFRVSAAVFIADFVPRVWAGLEALGLGHPGRDV---PVDWDHE 121
Query 131 TDLSAAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSALDAGGSETLY 190
TD + A+ F+PAVAR+RALDP+T+E+VRLRGA HNCR+CKSLRE ALDAGGSE+LY
Sbjct 122 TDPAQALLGEFVPAVARLRALDPLTTEVVRLRGAVAHNCRLCKSLREGHALDAGGSESLY 181
Query 191 GEIERFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAVEVRSRFSDDEAVELTFDIMRN 250
EI+ ++ S L KAALRY DAL+WTP+ + V+VA VRS FS+DE++ELT DIMRN
Sbjct 182 AEIQDYEHSEQLSDEHKAALRYVDALVWTPSAIPVEVARGVRSCFSEDESLELTLDIMRN 241
Query 251 ASNKVAVSLGADAPRVQQGTERYRIGLDGQTVF 283
A+NK+AV+LGAD PRV GTERY I DGQTVF
Sbjct 242 ATNKIAVALGADTPRVASGTERYLIDDDGQTVF 274
>gi|108800393|ref|YP_640590.1| hypothetical protein Mmcs_3427 [Mycobacterium sp. MCS]
gi|119869522|ref|YP_939474.1| hypothetical protein Mkms_3490 [Mycobacterium sp. KMS]
gi|108770812|gb|ABG09534.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119695611|gb|ABL92684.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=278
Score = 300 bits (767), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 158/273 (58%), Positives = 198/273 (73%), Gaps = 3/273 (1%)
Query 11 LCRLVALSPGDGRIAGLVRQVCARALSLPSLPCEVAVNEPESPAEAVVAEFAEQFSVDVS 70
L LVA S GD R+ ++R C RAL L LP EV + + +S AE+VVA FAEQF+ DV+
Sbjct 5 LSALVATSSGDLRLDTVIRLTCGRALRLLPLPVEVDLFDGKSDAESVVAAFAEQFATDVT 64
Query 71 AITGEQRSLLWTHLGEDAFGAVVAMYIADFVPRVRAGLEALGVGKEYLGWVTGPISWDHN 130
++ QR+ T LG+ AF A+++ADFVPRV AGLEALG+G P+ WDH
Sbjct 65 GVSDNQRTCFVTALGDRAFRVSAAVFVADFVPRVWAGLEALGLGHPGRDV---PVDWDHE 121
Query 131 TDLSAAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSALDAGGSETLY 190
TD + A+ F+PAVAR+RALDP+T+E+VRLRGA HNCR+CKSLRE ALDAGGSE+LY
Sbjct 122 TDPAQALLGEFVPAVARLRALDPLTTEVVRLRGAVAHNCRLCKSLREGHALDAGGSESLY 181
Query 191 GEIERFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAVEVRSRFSDDEAVELTFDIMRN 250
EI+ ++ S L KAALRY DAL+WTP+ + V+VA VRS FS+DE++ELT DIMRN
Sbjct 182 AEIQDYEHSEQLSDDHKAALRYVDALVWTPSAIPVEVARGVRSCFSEDESLELTLDIMRN 241
Query 251 ASNKVAVSLGADAPRVQQGTERYRIGLDGQTVF 283
A+NK+AV+LGAD PRV GTERY I DGQTVF
Sbjct 242 ATNKIAVALGADTPRVASGTERYLIDDDGQTVF 274
>gi|120404760|ref|YP_954589.1| hypothetical protein Mvan_3802 [Mycobacterium vanbaalenii PYR-1]
gi|119957578|gb|ABM14583.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=280
Score = 265 bits (678), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 150/273 (55%), Positives = 189/273 (70%), Gaps = 3/273 (1%)
Query 11 LCRLVALSPGDGRIAGLVRQVCARALSLPSLPCEVAVNEPESPAEAVVAEFAEQFSVDVS 70
L LVALS G+ R L+R C RALSLP LP + + + +AV+ FAEQF+VDV+
Sbjct 10 LAGLVALSSGEERADTLIRLTCGRALSLPPLPTPTDLPDEYTDEDAVLVAFAEQFAVDVT 69
Query 71 AITGEQRSLLWTHLGEDAFGAVVAMYIADFVPRVRAGLEALGVGKEYLGWVTGPISWDHN 130
I QR L G++AF VVA++IADFVPRV AG EALG+GK GW + ++ D +
Sbjct 70 GIGDIQRERLMDVFGDNAFRVVVAIFIADFVPRVWAGCEALGLGKP--GW-SADVTLDRD 126
Query 131 TDLSAAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSALDAGGSETLY 190
TD A V G +PAVAR+ LDPVT+E+VRLRGA HNCR+CKSLRE ALDAGGSE LY
Sbjct 127 TDPVAKVLGGLVPAVARLHDLDPVTTEVVRLRGAEAHNCRLCKSLREGHALDAGGSEDLY 186
Query 191 GEIERFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAVEVRSRFSDDEAVELTFDIMRN 250
+I F+++ L KAALRY DALIW+P+ + VA VR FS+ + +ELT D+MRN
Sbjct 187 RQIADFESADGLSEAHKAALRYVDALIWSPSRIDAAVADGVRRHFSESQMLELTLDVMRN 246
Query 251 ASNKVAVSLGADAPRVQQGTERYRIGLDGQTVF 283
A+NK+AVSL ADAPRV +GTERY + GQT+F
Sbjct 247 AANKIAVSLAADAPRVAEGTERYEVDEQGQTIF 279
>gi|145223321|ref|YP_001133999.1| hypothetical protein Mflv_2734 [Mycobacterium gilvum PYR-GCK]
gi|315443781|ref|YP_004076660.1| hypothetical protein Mspyr1_21720 [Mycobacterium sp. Spyr1]
gi|145215807|gb|ABP45211.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
gi|315262084|gb|ADT98825.1| hypothetical protein Mspyr1_21720 [Mycobacterium sp. Spyr1]
Length=279
Score = 263 bits (671), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 141/273 (52%), Positives = 187/273 (69%), Gaps = 3/273 (1%)
Query 11 LCRLVALSPGDGRIAGLVRQVCARALSLPSLPCEVAVNEPESPAEAVVAEFAEQFSVDVS 70
L RLV LS GD R L+R C RALSL LP + + + +AV+ FAEQFSVDV+
Sbjct 9 LARLVGLSAGDDRADTLIRLTCGRALSLTPLPPPADLPDAHTDDDAVLVAFAEQFSVDVT 68
Query 71 AITGEQRSLLWTHLGEDAFGAVVAMYIADFVPRVRAGLEALGVGKEYLGWVTGPISWDHN 130
I QR+ G++AF VVA+++ADF+PRV AG +ALG+G+ GW + + D +
Sbjct 69 GIGENQRNRFVKVYGDNAFRVVVAIFVADFLPRVWAGCDALGLGRP--GW-SAEVQIDRD 125
Query 131 TDLSAAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSALDAGGSETLY 190
TD AV GF+PAVA++R +DPVT+ELVRLRGA HNCR+CKSLRE ALDAGGSE LY
Sbjct 126 TDPVGAVLGGFVPAVAKLREVDPVTTELVRLRGAEAHNCRLCKSLREGHALDAGGSEDLY 185
Query 191 GEIERFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAVEVRSRFSDDEAVELTFDIMRN 250
+I ++ + L K+ALRY DAL+WTP+ + V +R FS+ + +E+T D+MRN
Sbjct 186 RQIADYERADGLTEAHKSALRYVDALVWTPSAIDDAVVDGMRRHFSEKQMLEITLDVMRN 245
Query 251 ASNKVAVSLGADAPRVQQGTERYRIGLDGQTVF 283
A+NK+AVS+ ADAPRV +GTERY + GQT+F
Sbjct 246 AANKIAVSMAADAPRVAEGTERYEVDEQGQTIF 278
>gi|118473828|ref|YP_888729.1| hypothetical protein MSMEG_4456 [Mycobacterium smegmatis str.
MC2 155]
gi|118175115|gb|ABK76011.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=271
Score = 248 bits (634), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 139/256 (55%), Positives = 172/256 (68%), Gaps = 11/256 (4%)
Query 28 VRQVCARALSLPSLPCEVAVNEPESPAEAVVAEFAEQFSVDVSAITGEQRSLLWTHLGED 87
+R+VCA L LP E + +V+EFAEQFSVDV+ I QR LG +
Sbjct 26 IREVCAAVTGLSPLPAE----SRGGAVDPMVSEFAEQFSVDVTGINPAQRLAFSDLLGVE 81
Query 88 AFGAVVAMYIADFVPRVRAGLEALGVGKEYLGWVTGPISWDHNTDLSAAVFNGFLPAVAR 147
F ++IADFVPRV AGL +LGVG WDH+TD V + F PAV R
Sbjct 82 TFRVATLIFIADFVPRVLAGLSSLGVGVGVAVDGD---IWDHDTDPGDFVLDVFGPAVGR 138
Query 148 MRALDPVTSELVRLRGAAQHNCRVCKSLREVSALDAGGSETLYGEIERFDTSVLLDVRAK 207
MRALDPVT+E+VRLRGA HNCR+CKSLRE +AL+AG ETLY +I+R++TS + D R K
Sbjct 139 MRALDPVTTEIVRLRGARVHNCRLCKSLREATALEAGACETLYDQIDRYETSEMSD-RHK 197
Query 208 AALRYADALIWTPAHLAVDVAVEVRSRFSDDEAVELTFDIMRNASNKVAVSLGADAPRVQ 267
AALRY DA+IWTP+ D E+ FS +EAVELT D+MRNASNKVAV+LG DAPRV
Sbjct 198 AALRYVDAMIWTPSQAPGD---ELLRHFSHEEAVELTLDVMRNASNKVAVALGVDAPRVS 254
Query 268 QGTERYRIGLDGQTVF 283
+GTE+YR+G DGQ ++
Sbjct 255 EGTEQYRLGADGQPIY 270
>gi|312138779|ref|YP_004006115.1| hypothetical protein REQ_13430 [Rhodococcus equi 103S]
gi|311888118|emb|CBH47430.1| hypothetical protein REQ_13430 [Rhodococcus equi 103S]
Length=299
Score = 219 bits (557), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 136/280 (49%), Positives = 169/280 (61%), Gaps = 9/280 (3%)
Query 5 VSVRDDLCRLVALSPGDGRIAGLVRQVCARALSLPSLPCEVAVNEPESPAEAVVAEFAEQ 64
+ V L RL+A +P D +A R VCAR LSLP LP + + + A EFAEQ
Sbjct 24 LEVASTLDRLIATAPTD--LAAGTRVVCARTLSLPPLPAPARIADDLTGASL---EFAEQ 78
Query 65 FSVDVSAITGEQRSLLWTHLGEDAFGAVVAMYIADFVPRVRAGLEALGVGKEYLGWVTGP 124
FSVDVS I QR+ L T +G D V +Y+AD+VPR RAGL+AL E GW T P
Sbjct 79 FSVDVSMIDDAQRASLTTAIGADTGRFVQLLYVADWVPRARAGLDALFSASEP-GW-TVP 136
Query 125 ISWDHNTDLSAAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSALDAG 184
+ WD + + L +AR+R LDPVT+E+VRL A QHNCR+CKSLR +A+ AG
Sbjct 137 VEWDTAGE-PWPLIQRTLVEIARVRELDPVTTEVVRLYQARQHNCRLCKSLRNRTAMMAG 195
Query 185 GSETLYGEIERFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAVEVRSRFSDDEAVELT 244
G E LY EI+ F S L R KAAL +ADALIW PA + V +VR+ FS EAVEL
Sbjct 196 GREELYDEIDDFRRSGL-SPRHKAALEFADALIWQPARIDPQVVADVRTHFSPAEAVELV 254
Query 245 FDIMRNASNKVAVSLGADAPRVQQGTERYRIGLDGQTVFG 284
D++RNA NK+AVS G D V +G E Y + DG FG
Sbjct 255 IDLLRNACNKIAVSTGTDGANVAEGIEVYDVNPDGSVDFG 294
>gi|325676524|ref|ZP_08156202.1| hypothetical protein HMPREF0724_13985 [Rhodococcus equi ATCC
33707]
gi|325552702|gb|EGD22386.1| hypothetical protein HMPREF0724_13985 [Rhodococcus equi ATCC
33707]
Length=296
Score = 218 bits (556), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 135/274 (50%), Positives = 167/274 (61%), Gaps = 9/274 (3%)
Query 11 LCRLVALSPGDGRIAGLVRQVCARALSLPSLPCEVAVNEPESPAEAVVAEFAEQFSVDVS 70
L RL+A +P D +A R VCAR LSLP LP + + + A EFAEQFSVDVS
Sbjct 27 LDRLIATAPTD--LAAGTRVVCARTLSLPPLPAPARIADDLTGASL---EFAEQFSVDVS 81
Query 71 AITGEQRSLLWTHLGEDAFGAVVAMYIADFVPRVRAGLEALGVGKEYLGWVTGPISWDHN 130
I QR+ L T +G D V +Y+AD+VPR RAGL+AL E GW T P+ WD
Sbjct 82 MIDDAQRASLTTAIGADTGRFVQLLYVADWVPRARAGLDALFSASEP-GW-TVPVEWDTA 139
Query 131 TDLSAAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSALDAGGSETLY 190
+ + L +AR+R LDPVT+E+VRL A QHNCR+CKSLR +A+ AGG E LY
Sbjct 140 GE-PWPLIQRTLVEIARVRELDPVTTEVVRLYQARQHNCRLCKSLRNRTAMMAGGREELY 198
Query 191 GEIERFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAVEVRSRFSDDEAVELTFDIMRN 250
EI+ F S L R KAAL +ADALIW PA + V +VR+ FS EAVEL D++RN
Sbjct 199 DEIDDFRRSGL-SPRHKAALEFADALIWQPARIDPQVVADVRTHFSPAEAVELVIDLLRN 257
Query 251 ASNKVAVSLGADAPRVQQGTERYRIGLDGQTVFG 284
A NK+AVS G D V +G E Y + DG FG
Sbjct 258 ACNKIAVSTGTDGANVAEGIEVYDVNPDGSVDFG 291
>gi|326384917|ref|ZP_08206591.1| hypothetical protein SCNU_18322 [Gordonia neofelifaecis NRRL
B-59395]
gi|326196307|gb|EGD53507.1| hypothetical protein SCNU_18322 [Gordonia neofelifaecis NRRL
B-59395]
Length=308
Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 131/287 (46%), Positives = 172/287 (60%), Gaps = 10/287 (3%)
Query 3 APVSVRDDLCRLVALSPG--DGRIAGLVRQVCARALSLPSLPCEVAVNEPESPA--EAVV 58
AP +VR L LVAL+P G + LVR VCA L L +LP + ++ + ++
Sbjct 21 APEAVRG-LESLVALAPSLVGGDLTELVRTVCADTLGLDALPSPRGRQQRDTSGAVDELL 79
Query 59 AEFAEQFSVDVSAITGEQRSLLWTHLGEDAFGAVVAM-YIADFVPRVRAGLEALGVGKEY 117
EFA QF+VDVS I R + G D GAV+AM Y+AD+ PR R L+ L G
Sbjct 80 TEFAGQFTVDVSVIDDAARRDVVAAFGTD-LGAVMAMIYVADWTPRTRRALDRL-FGAPV 137
Query 118 LGWVTGPISWDHNTDLSAAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLRE 177
GW P WD + + + F+ +VAR+R +DPVT+ELVRLR A QHNCR+CKSLR
Sbjct 138 DGWPV-PDRWDDSAVDAWDRVDAFMRSVARLREVDPVTTELVRLREARQHNCRICKSLRS 196
Query 178 VSALDAGGSETLYGEIERFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAVEVRSRFSD 237
SAL AG E+ + EI+ ++ S L D R +AAL ADA+IW P H+ V +VR+ FS
Sbjct 197 RSALTAGVDESTFDEIDHYEDSTL-DPRQRAALALADAMIWQPGHIDDAVFDDVRAHFSP 255
Query 238 DEAVELTFDIMRNASNKVAVSLGADAPRVQQGTERYRIGLDGQTVFG 284
EAVEL D+MRNAS+K+AV+ GAD V +G E Y + DG FG
Sbjct 256 AEAVELVLDLMRNASSKIAVATGADQANVAEGVEIYDVRSDGTVEFG 302
>gi|254283172|ref|ZP_04958140.1| conserved hypothetical protein [gamma proteobacterium NOR51-B]
gi|219679375|gb|EED35724.1| conserved hypothetical protein [gamma proteobacterium NOR51-B]
Length=302
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/237 (30%), Positives = 107/237 (46%), Gaps = 13/237 (5%)
Query 55 EAVVAEFAEQFSVDVSAITGEQRSLLWTHLGEDAFGAVV-AMYIADF-------VPRVRA 106
E + A+QF+V V I+ +Q L +L A A+V ++Y+ D VP V
Sbjct 61 ELAACQLADQFAVSVDGISEQQIESLGRYLEPAAITALVNSLYLIDMALRLEQVVPVVIP 120
Query 107 GLEALGVGKEYLGWVTGPISWDHNTDLSAAVFNGFLPAVARMRALDPVTSELVRLRGAAQ 166
E G+ + ++ V F +D +T ELVRLR A
Sbjct 121 HAENADAGQTT---ASAEAPTGDQESVTGKVIADFAATAVLADEIDALTGELVRLRCAQI 177
Query 167 HNCRVCKSLREVSALDAGGSETLYGEIERFDTSVLLDVRAKAALRYADALIWTPAHLAVD 226
H+CR+C SLR+ SAL G E++ ++ R++ D AAL D LI TP+
Sbjct 178 HHCRMCGSLRQRSALQNGFEESMAEKVSRYEQGGFSD-SVVAALHLVDTLIMTPSDADAA 236
Query 227 VAVEVRSRFSDDEAVELTFDIMRNASNKVAVSLGADAPRVQQGTERYRIGLDGQTVF 283
+A EV+ FS + EL FD+++ + K V+ DAP +G GQ +F
Sbjct 237 LAAEVQQHFSPGQIAELCFDVVKWSQQKALVATHIDAPP-WEGIHVLNFDEQGQPLF 292
>gi|119476633|ref|ZP_01616943.1| hypothetical protein GP2143_03353 [marine gamma proteobacterium
HTCC2143]
gi|119449889|gb|EAW31125.1| hypothetical protein GP2143_03353 [marine gamma proteobacterium
HTCC2143]
Length=176
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/113 (37%), Positives = 67/113 (60%), Gaps = 1/113 (0%)
Query 152 DPVTSELVRLRGAAQHNCRVCKSLREVSALDAGGSETLYGEIERFDTSVLLDVRAKAALR 211
DP+ +ELVRLR A H+CR+C SLR ALD G E ++ +I R+++S + AAL+
Sbjct 41 DPLITELVRLRCAQVHDCRLCGSLRNQEALDQGFDEIMHSKIARYESSD-FNPAIIAALQ 99
Query 212 YADALIWTPAHLAVDVAVEVRSRFSDDEAVELTFDIMRNASNKVAVSLGADAP 264
DA+I +P + +++ FS + E+ D+M+ + K V+L ++AP
Sbjct 100 LCDAIILSPTAANATLKEKLQQYFSAAQIAEICLDVMKWSQQKALVALRSEAP 152
>gi|213649427|ref|ZP_03379480.1| hypothetical protein SentesTy_20322 [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
Length=34
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/34 (100%), Positives = 34/34 (100%), Gaps = 0/34 (0%)
Query 39 PSLPCEVAVNEPESPAEAVVAEFAEQFSVDVSAI 72
PSLPCEVAVNEPESPAEAVVAEFAEQFSVDVSAI
Sbjct 1 PSLPCEVAVNEPESPAEAVVAEFAEQFSVDVSAI 34
>gi|342857705|ref|ZP_08714361.1| carboxymuconolactone decarboxylase [Mycobacterium colombiense
CECT 3035]
gi|342135038|gb|EGT88204.1| carboxymuconolactone decarboxylase [Mycobacterium colombiense
CECT 3035]
Length=191
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/111 (39%), Positives = 58/111 (53%), Gaps = 4/111 (3%)
Query 135 AAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSALDAGGSETLYGEIE 194
A F A+ L P EL+RLR A + CR C SLR S +D G +E L +E
Sbjct 38 AKQFGALQAALHTDGTLPPRLVELLRLRIAFHNQCRSCMSLRYQSGIDDGVTEELVCSLE 97
Query 195 RFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAV--EVRSRFSDDEAVEL 243
R + L ++AL +AD ++ HLA+D V ++R FSDDE VEL
Sbjct 98 RPAEAPDLSAAERSALHFAD--LFATNHLAIDDTVYDDLRRHFSDDELVEL 146
>gi|331699601|ref|YP_004335840.1| carboxymuconolactone decarboxylase [Pseudonocardia dioxanivorans
CB1190]
gi|326954290|gb|AEA27987.1| Carboxymuconolactone decarboxylase [Pseudonocardia dioxanivorans
CB1190]
Length=198
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/114 (40%), Positives = 59/114 (52%), Gaps = 4/114 (3%)
Query 136 AVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSALDAGGSETLYGEIER 195
+ F F A+A L P ELVRLR A + CR C +LR S + G +E L +E+
Sbjct 44 SAFLTFRSALAATSTLPPRLVELVRLRIAFHNQCRSCMALRTASGAEDGVTEGLVCSLEK 103
Query 196 FDTSVLLDVRAKAALRYADALIWTPAHLAVDVAV--EVRSRFSDDEAVELTFDI 247
+ L KAALRYAD ++ HLA D AV +R F++ E VEL I
Sbjct 104 PQEAPDLTAAEKAALRYAD--LFATDHLAADDAVFDLLREHFTEPEIVELGVQI 155
>gi|241113093|ref|YP_002972928.1| alkylhydroperoxidase-like protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240861301|gb|ACS58967.1| alkylhydroperoxidase like protein, AhpD family [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length=152
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 63/130 (49%), Gaps = 7/130 (5%)
Query 149 RALDPVTSELVRLRGAAQHNCRVCKSLREVSALDAGGSETLYGEIERFDTSVLLDVRAKA 208
++ DP ELV++R + + C C + AL G ++ + + S L R +A
Sbjct 27 KSFDPKLLELVKVRVSQMNGCAHCLHMHRHDALKLGETDDRLLLLNAWPESQLFTTRERA 86
Query 209 ALRYADALIW-TPAHLAVDVAVEVRSRFSDDEAVELTFDI-MRNASNKVAVSLGADAPRV 266
AL +A+AL +H DV E + FSDDE V L+ + M NA N++A+ R+
Sbjct 87 ALAWAEALTQIAKSHAPDDVYEEAHANFSDDEFVALSIGVAMINAWNRLAIGF-----RL 141
Query 267 QQGTERYRIG 276
Q + R+
Sbjct 142 QHPADHKRVA 151
>gi|54295318|ref|YP_127733.1| hypothetical protein lpl2403 [Legionella pneumophila str. Lens]
gi|54298483|ref|YP_124852.1| hypothetical protein lpp2547 [Legionella pneumophila str. Paris]
gi|53752268|emb|CAH13700.1| hypothetical protein lpp2547 [Legionella pneumophila str. Paris]
gi|53755150|emb|CAH16643.1| hypothetical protein lpl2403 [Legionella pneumophila str. Lens]
gi|307611342|emb|CBX01003.1| hypothetical protein LPW_27051 [Legionella pneumophila 130b]
Length=185
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/161 (25%), Positives = 71/161 (45%), Gaps = 17/161 (10%)
Query 120 WVTGPISWDHNTD----LSAAVFNGFLP----AVARMRA--------LDPVTSELVRLRG 163
W P W+ L A+ +P AVA M L P+ L+ +R
Sbjct 13 WYLKPFFWNQKRKYGQILEPALIWARIPRLFLAVAAMYGVIDRKKSPLSPILRSLITVRV 72
Query 164 AAQHNCRVCKSLREVSALDAGGSETLYGEIERFDTSVLLDVRAKAALRYADALIWTPAHL 223
+ + C C + + + GSE Y ++ ++ +S L KAAL YA+ + ++
Sbjct 73 SQINWCAFCVDINSATLIKRAGSEAQYKQLAKWRSSSLFSPEEKAALDYAEKVTYSDQRP 132
Query 224 AVDVAVEVRSRFSDDEAVELTFDI-MRNASNKVAVSLGADA 263
+ +++ +S+ E +ELT I +N S+K +LG +A
Sbjct 133 DDECFNQLKLYYSEQEIIELTALIAFQNMSSKFNSALGVEA 173
>gi|52842691|ref|YP_096490.1| hypothetical protein lpg2483 [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|52629802|gb|AAU28543.1| hypothetical protein lpg2483 [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
Length=185
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/161 (25%), Positives = 71/161 (45%), Gaps = 17/161 (10%)
Query 120 WVTGPISWDHNTD----LSAAVFNGFLP----AVARMRA--------LDPVTSELVRLRG 163
W P W+ L A+ +P AVA M L P+ L+ +R
Sbjct 13 WYLKPFFWNQKRKYGQILEPALIWARIPRLFLAVAAMYGVIDRKKSPLSPILRSLITVRV 72
Query 164 AAQHNCRVCKSLREVSALDAGGSETLYGEIERFDTSVLLDVRAKAALRYADALIWTPAHL 223
+ + C C + + + GSE Y ++ ++ +S L KAAL YA+ + ++
Sbjct 73 SQINWCAFCVDINSATLIKRAGSEARYKQLAKWRSSSLFSPEEKAALDYAEKVTYSYQRP 132
Query 224 AVDVAVEVRSRFSDDEAVELTFDI-MRNASNKVAVSLGADA 263
+ +++ +S+ E +ELT I +N S+K +LG +A
Sbjct 133 DDECFNQLKLYYSEQEIIELTALIAFQNMSSKFNSALGVEA 173
>gi|148360064|ref|YP_001251271.1| hypothetical protein LPC_1995 [Legionella pneumophila str. Corby]
gi|296108115|ref|YP_003619816.1| hypothetical protein lpa_03617 [Legionella pneumophila 2300/99
Alcoy]
gi|148281837|gb|ABQ55925.1| hypothetical protein LPC_1995 [Legionella pneumophila str. Corby]
gi|295650017|gb|ADG25864.1| putative conserved protein [Legionella pneumophila 2300/99 Alcoy]
Length=185
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/114 (27%), Positives = 58/114 (51%), Gaps = 1/114 (0%)
Query 151 LDPVTSELVRLRGAAQHNCRVCKSLREVSALDAGGSETLYGEIERFDTSVLLDVRAKAAL 210
L P+ L+ +R + + C C + + + GSE Y ++ ++ +S L KAAL
Sbjct 60 LSPILRSLITVRVSQINWCEFCVDINSATLIKRAGSEAHYKQLAKWRSSSLFSPEEKAAL 119
Query 211 RYADALIWTPAHLAVDVAVEVRSRFSDDEAVELTFDI-MRNASNKVAVSLGADA 263
YA+ + ++ + +++ +S+ E +ELT I +N S+K +LG +A
Sbjct 120 DYAEKVTYSDQRPDDECFNQLKLYYSEQEIIELTALIAFQNMSSKFNSALGVEA 173
>gi|114776676|ref|ZP_01451719.1| hypothetical protein SPV1_10691 [Mariprofundus ferrooxydans PV-1]
gi|114552762|gb|EAU55193.1| hypothetical protein SPV1_10691 [Mariprofundus ferrooxydans PV-1]
Length=147
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/117 (30%), Positives = 55/117 (48%), Gaps = 1/117 (0%)
Query 147 RMRALDPVTSELVRLRGAAQHNCRVCKSLREVSALDAGGSETLYGEIERFDTSVLLDVRA 206
R L+P LV +R + + CR C + + L G + ++ F S L R
Sbjct 15 RSSPLEPALRSLVTVRVSQINWCRFCVDINSATVLKRGVEREKFDKLTEFRESGLFSARE 74
Query 207 KAALRYADALIWTPAHLAVDVAVEVRSRFSDDEAVELTFDI-MRNASNKVAVSLGAD 262
+AAL YA+A+ + ++ +R F DD +ELT I +N S+K +LG +
Sbjct 75 QAALVYAEAVTCSDQQPGENLFTALRRYFDDDAIIELTGLIAFQNMSSKFNAALGVE 131
>gi|299138127|ref|ZP_07031307.1| alkylhydroperoxidase like protein, AhpD family [Acidobacterium
sp. MP5ACTX8]
gi|298600057|gb|EFI56215.1| alkylhydroperoxidase like protein, AhpD family [Acidobacterium
sp. MP5ACTX8]
Length=159
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/131 (29%), Positives = 61/131 (47%), Gaps = 5/131 (3%)
Query 134 SAAVFNGFLPA---VARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSALDAGGSETLY 190
S A +N L + + L+P ELV++R + + C C + A G SE
Sbjct 11 SPAAYNAMLNLEMFIRKSSKLEPSLLELVKMRASQINGCAYCIDMHSKDARAEGESEQRL 70
Query 191 GEIERFDTSVLLDVRAKAALRYADAL-IWTPAHLAVDVAVEVRSRFSDDEAVELTFDIMR 249
+ + + R +AAL + +A+ + H+ + E R RFSD+E V LT I+
Sbjct 71 YALSAWRETPFFTDREQAALAWTEAVTLVAEGHVPDEAYEEARQRFSDEELVNLTLAIIT 130
Query 250 -NASNKVAVSL 259
N N++A+S
Sbjct 131 INGWNRIAISF 141
>gi|283785020|ref|YP_003364885.1| decarboxylase [Citrobacter rodentium ICC168]
gi|282948474|emb|CBG88063.1| putative decarboxylase [Citrobacter rodentium ICC168]
Length=199
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/147 (29%), Positives = 67/147 (46%), Gaps = 8/147 (5%)
Query 103 RVRAGLEALGVG-KEYLGWVTGPISWDHNTDLS---AAVFNGFLPAVARMRA-LDPVTSE 157
R+ +GL+ L + K++ G V P W A+F GFL R RA L P
Sbjct 23 RLPSGLKPLTMAQKKHYGEVLHPTRWWGRMPFLFWLVALFVGFL---ERRRARLTPEMRA 79
Query 158 LVRLRGAAQHNCRVCKSLREVSALDAGGSETLYGEIERFDTSVLLDVRAKAALRYADALI 217
L+ R + +C C + + G+ + ++ TS L + + AL YADA+
Sbjct 80 LLMSRVSQACHCAFCIDANSLRLAERCGAMDKVLAVAQWQTSALFSAQERVALAYADAVT 139
Query 218 WTPAHLAVDVAVEVRSRFSDDEAVELT 244
TP + + +++ FSDDE E+T
Sbjct 140 ATPPQVDEALKAQMKQHFSDDEISEMT 166
>gi|331696071|ref|YP_004332310.1| carboxymuconolactone decarboxylase [Pseudonocardia dioxanivorans
CB1190]
gi|326950760|gb|AEA24457.1| Carboxymuconolactone decarboxylase [Pseudonocardia dioxanivorans
CB1190]
Length=197
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/105 (38%), Positives = 53/105 (51%), Gaps = 4/105 (3%)
Query 141 FLPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSALDAGGSETLYGEIERFDTSV 200
F A +L P ELVRLR A + CR C ++R A G E L +E+ + +
Sbjct 42 FFGAWMTDTSLAPRLVELVRLRIAFHNQCRSCMAMRYDHATLDGVDEDLVCSLEKPEEAP 101
Query 201 LLDVRAKAALRYADALIWTPAHLAVDVAV--EVRSRFSDDEAVEL 243
L +AAL YAD L HL++D V ++R +SD E VEL
Sbjct 102 NLTDADRAALDYADRL--ATNHLSIDDTVYDDLRKYYSDGEIVEL 144
>gi|292491788|ref|YP_003527227.1| alkylhydroperoxidase like protein, AhpD family [Nitrosococcus
halophilus Nc4]
gi|291580383|gb|ADE14840.1| alkylhydroperoxidase like protein, AhpD family [Nitrosococcus
halophilus Nc4]
Length=190
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/131 (28%), Positives = 57/131 (44%), Gaps = 8/131 (6%)
Query 141 FLPAVARMRALD-------PVTSELVRLRGAAQHNCRVCKSLREVSALDAGGSETLYGEI 193
F+P V RA+D P LV +R + ++C C L L G +
Sbjct 44 FVPFVLLYRAIDRRSSPIDPQLRSLVMVRVSQINHCAFCVDLNSAMVLQRGLEPDKLMAL 103
Query 194 ERFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAVEVRSRFSDDEAVELTFDI-MRNAS 252
F S L + R K L YA+A+ + D ++R F ++ +ELT I +N S
Sbjct 104 SEFKASSLFNDREKTVLAYAEAMTYQERQPTGDHFEQLRRHFDEETIIELTGLIAFQNMS 163
Query 253 NKVAVSLGADA 263
+K +LG ++
Sbjct 164 SKFNTALGVES 174
>gi|170736995|ref|YP_001778255.1| alkylhydroperoxidase [Burkholderia cenocepacia MC0-3]
gi|169819183|gb|ACA93765.1| alkylhydroperoxidase like protein, AhpD family [Burkholderia
cenocepacia MC0-3]
Length=159
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/149 (30%), Positives = 66/149 (45%), Gaps = 9/149 (6%)
Query 134 SAAVFNGFL--PAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSALDAGGSETLYG 191
S +F FL + R A++ +LV LR + + C C + A G E
Sbjct 11 SPELFRKFLELSNLLRSSAIEESIRDLVSLRASQINGCAFCVDMHVKEARIHGERELRLH 70
Query 192 EIERFDTSVLLDVRAKAALRYADALIWTPAH-LAVDVAVEVRSRFSDDEAVELTFDIMR- 249
+ + S L R +AAL + +AL PAH + DV VR + S+ E +LTF++M
Sbjct 71 HLATWRESTLFSPRERAALAWTEALTALPAHGVPDDVYDRVRGQLSEKELSDLTFEVMAI 130
Query 250 NASNKVAVSLGADAPRVQQGTERYRIGLD 278
N N+ V+ R G+ GLD
Sbjct 131 NGWNRANVAF-----RTVPGSSDKAFGLD 154
>gi|334145269|ref|YP_004538479.1| carboxymuconolactone decarboxylase family protein [Novosphingobium
sp. PP1Y]
gi|333937153|emb|CCA90512.1| carboxymuconolactone decarboxylase family protein [Novosphingobium
sp. PP1Y]
Length=151
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/119 (29%), Positives = 54/119 (46%), Gaps = 1/119 (0%)
Query 129 HNTDLSAAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSALDAGGSET 188
H D+ A F F + L ELVRL A + C C R +++ G +E
Sbjct 6 HRPDIVKA-FGAFYAQLQMQGLLSRKLVELVRLAIAQINQCANCLQSRYQDSIEEGLTEE 64
Query 189 LYGEIERFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAVEVRSRFSDDEAVELTFDI 247
L + +TS L R +AA+ +A + + + D + + FS++E VEL FD+
Sbjct 65 LIAALPGVETSPLFSERERAAIVFAQKMAFNHFDVGDDDFIRLHQHFSEEEIVELCFDV 123
>gi|344942745|ref|ZP_08782032.1| alkylhydroperoxidase like protein, AhpD family [Methylobacter
tundripaludum SV96]
gi|344260032|gb|EGW20304.1| alkylhydroperoxidase like protein, AhpD family [Methylobacter
tundripaludum SV96]
Length=189
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (29%), Positives = 54/114 (48%), Gaps = 1/114 (0%)
Query 151 LDPVTSELVRLRGAAQHNCRVCKSLREVSALDAGGSETLYGEIERFDTSVLLDVRAKAAL 210
+DPV L+ +R + + C C + GS +E++ S L D + + L
Sbjct 60 IDPVLRSLITVRVSQINECHFCIDINSAVLAKRTGSMNKVEALEQWQASELFDSKERLVL 119
Query 211 RYADALIWTPAHLAVDVAVEVRSRFSDDEAVELTFDI-MRNASNKVAVSLGADA 263
YA+A+ +T + D+ + F++DE VELT I +N S+K +L A
Sbjct 120 EYAEAVTYTERRVDDDLVQRLHEYFNEDEIVELTGLIAFQNLSSKFNSALDLPA 173
>gi|254480184|ref|ZP_05093432.1| hypothetical protein GPB2148_3222 [marine gamma proteobacterium
HTCC2148]
gi|214039746|gb|EEB80405.1| hypothetical protein GPB2148_3222 [marine gamma proteobacterium
HTCC2148]
Length=182
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/153 (27%), Positives = 69/153 (46%), Gaps = 12/153 (7%)
Query 124 PISWDHNTDLSAAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSALDA 183
P + H DL+ A+++ L P EL RLR A C +C+++R A+
Sbjct 38 PETLPHYLDLTVAIWDA--------GPLSPSDIELARLRNANHVGCVMCQAVRYDIAVAD 89
Query 184 GGSETLYGEIERFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAVEVRSRFSDDEAVEL 243
G +E L ++ + L R + +R+ D + +P+ D+ + +FS+ E V L
Sbjct 90 GLTEDLVDQVSKQGIQAGLPERQELIVRFVDWYVLSPSAHDADLKRCLNEQFSEAEQVHL 149
Query 244 TFDIMR-NASNKVAVSLGA---DAPRVQQGTER 272
+ N ++ AVSLG PR++ R
Sbjct 150 ALLMAYFNGFSRCAVSLGGMPDSMPRMEISVPR 182
>gi|170696694|ref|ZP_02887810.1| alkylhydroperoxidase like protein, AhpD family [Burkholderia
graminis C4D1M]
gi|170138397|gb|EDT06609.1| alkylhydroperoxidase like protein, AhpD family [Burkholderia
graminis C4D1M]
Length=145
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/112 (30%), Positives = 53/112 (48%), Gaps = 2/112 (1%)
Query 150 ALDPVTSELVRLRGAAQHNCRVCKSLREVSALDAGGSETLYGEIERFDTSVLLDVRAKAA 209
+++ +ELVRLR + + C C + A G ++ + + + R +AA
Sbjct 29 SIEKSLAELVRLRASQINGCAFCVDMHTTDARKGGETDRRLATVVTWRETPFFTDRERAA 88
Query 210 LRYADALIWTPAHLAVDVAVE-VRSRFSDDEAVELTFDIMR-NASNKVAVSL 259
L + +AL H D E VR FSD+E V+LT + NA N+ A+S
Sbjct 89 LEWTEALTLISHHHVPDAVWEAVRPHFSDEELVDLTLLVSTINAWNRFAISF 140
>gi|225873453|ref|YP_002754912.1| 4-carboxymuconolactone decarboxylase domain protein [Acidobacterium
capsulatum ATCC 51196]
gi|225791869|gb|ACO31959.1| 4-carboxymuconolactone decarboxylase domain protein [Acidobacterium
capsulatum ATCC 51196]
Length=151
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/139 (28%), Positives = 61/139 (44%), Gaps = 7/139 (5%)
Query 128 DHNTDLSAAVFNGF-----LPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSALD 182
+ D + A G+ L R L+P ELV++R + + C C + A
Sbjct 2 EQRIDYAKAFPEGYQAMIHLEGAVRRSGLEPALLELVKIRASQLNGCAFCIDMHTKDARH 61
Query 183 AGGSETLYGEIERFDTSVLLDVRAKAALRYADALI-WTPAHLAVDVAVEVRSRFSDDEAV 241
G +E + + + R AAL + +A+ H + V EVR FS+ E V
Sbjct 62 KGETEQRIYALSAWRETAFFTGRECAALAWTEAITNIQQGHASDAVYAEVREHFSEAETV 121
Query 242 ELTFDI-MRNASNKVAVSL 259
+LT+ I N N+VAV++
Sbjct 122 KLTWAIGAINVWNRVAVAM 140
>gi|107027594|ref|YP_625105.1| alkylhydroperoxidase AhpD core [Burkholderia cenocepacia AU 1054]
gi|116693694|ref|YP_839227.1| alkylhydroperoxidase [Burkholderia cenocepacia HI2424]
gi|105896968|gb|ABF80132.1| Alkylhydroperoxidase AhpD core [Burkholderia cenocepacia AU 1054]
gi|116651694|gb|ABK12334.1| alkylhydroperoxidase like protein, AhpD family [Burkholderia
cenocepacia HI2424]
Length=159
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/149 (29%), Positives = 66/149 (45%), Gaps = 9/149 (6%)
Query 134 SAAVFNGFL--PAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSALDAGGSETLYG 191
S +F FL + R A++ +LV LR + + C C + A G E
Sbjct 11 SPELFRKFLELSNLLRSSAIEESIRDLVSLRASQINGCAFCVDMHVKEARIHGERELRLH 70
Query 192 EIERFDTSVLLDVRAKAALRYADALIWTPAH-LAVDVAVEVRSRFSDDEAVELTFDIMR- 249
+ + S L R +AAL + +AL PAH + D+ VR + S+ E +LTF++M
Sbjct 71 HLATWRESTLFSPRERAALAWTEALTTLPAHGVPDDLYDRVRGQLSEKELSDLTFEVMAI 130
Query 250 NASNKVAVSLGADAPRVQQGTERYRIGLD 278
N N+ V+ R G+ GLD
Sbjct 131 NGWNRANVAF-----RTVPGSSDKAFGLD 154
>gi|322831493|ref|YP_004211520.1| alkylhydroperoxidase like protein, AhpD family [Rahnella sp.
Y9602]
gi|321166694|gb|ADW72393.1| alkylhydroperoxidase like protein, AhpD family [Rahnella sp.
Y9602]
Length=143
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/111 (33%), Positives = 59/111 (54%), Gaps = 2/111 (1%)
Query 151 LDPVTSELVRLRGAAQHNCRVCKSLREVSALDAGGSETLYGEIERFDTSVLLDVRAKAAL 210
LD V EL LR + + C C + + ++T ++ + S + R +AAL
Sbjct 31 LDNVIIELAFLRVSQINGCAYCLDMHSKALRKMEVAQTKLDQLAGWQVSHVYSERERAAL 90
Query 211 RYADALIWTPAHLAVDVAVE-VRSRFSDDEAVELTFDI-MRNASNKVAVSL 259
+A++L + A A D A E ++++FSD E ELTF I + NA N++AV +
Sbjct 91 AWAESLTFVAATGAPDNAFEPLKAQFSDVEISELTFAIGLMNAFNRLAVGM 141
>gi|187924397|ref|YP_001896039.1| alkylhydroperoxidase like protein [Burkholderia phytofirmans
PsJN]
gi|187715591|gb|ACD16815.1| alkylhydroperoxidase like protein, AhpD family [Burkholderia
phytofirmans PsJN]
Length=159
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/132 (28%), Positives = 63/132 (48%), Gaps = 4/132 (3%)
Query 134 SAAVFNGFLPAVARMR--ALDPVTSELVRLRGAAQHNCRVCKSLREVSALDAGGSETLYG 191
S +F FL +++ L+ +LV LR + + C C + A G E
Sbjct 11 SPELFKKFLEFSNQLKDCVLEESIRDLVSLRASQINGCGFCVDMHVKEARLHGERELRLH 70
Query 192 EIERFDTSVLLDVRAKAALRYADALIWTPAH-LAVDVAVEVRSRFSDDEAVELTFDIMR- 249
+ + S L R +AAL + +AL H ++ D+ VR++FS+ E +LTF++M
Sbjct 71 HVAIWRESTLFAPRERAALAWTEALTKLAEHGVSDDIYQHVRTQFSEKELSDLTFEVMAI 130
Query 250 NASNKVAVSLGA 261
N N+ +++ A
Sbjct 131 NGWNRASIAFKA 142
>gi|254255206|ref|ZP_04948522.1| hypothetical protein BDAG_04535 [Burkholderia dolosa AUO158]
gi|124900943|gb|EAY71693.1| hypothetical protein BDAG_04535 [Burkholderia dolosa AUO158]
Length=215
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/139 (30%), Positives = 59/139 (43%), Gaps = 7/139 (5%)
Query 142 LPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSALDAGGSETLYGEIERFDTSVL 201
L A+ +D ELV +R + + C C + +A G E + + S L
Sbjct 77 LDALFHKTTIDAPIRELVEIRASQLNGCAFCVDMHVKTAKIHGERELRLHHVAIWRESTL 136
Query 202 LDVRAKAALRYADALIWTPAH-LAVDVAVEVRSRFSDDEAVELTFDI-MRNASNKVAVSL 259
R +AAL + D L PAH + DV R FSD E +LTF + N N++ V+
Sbjct 137 FSPRERAALEWTDVLTHLPAHGVPDDVYERAREYFSDKELSDLTFLVGAINHWNRLNVAF 196
Query 260 GADAPRVQQGTERYRIGLD 278
R G+ GLD
Sbjct 197 -----RTVPGSFDKMFGLD 210
>gi|340786104|ref|YP_004751569.1| hypothetical protein CFU_0914 [Collimonas fungivorans Ter331]
gi|340551371|gb|AEK60746.1| hypothetical protein CFU_0914 [Collimonas fungivorans Ter331]
Length=197
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/111 (32%), Positives = 51/111 (46%), Gaps = 2/111 (1%)
Query 151 LDPVTSELVRLRGAAQHNCRVCKSLREVSALDAGGSETLYGEIERFDTSVLLDVRAKAAL 210
LD + ELVRLR + + C C + A AG SE + + + R +AAL
Sbjct 82 LDILLKELVRLRASQINGCAFCLDMHVADARKAGESERRMATVSAWRETPFFSDRERAAL 141
Query 211 RYADALIWTPAHLAVDVAVE-VRSRFSDDEAVELTFDIMR-NASNKVAVSL 259
+ ++L + D E VR F+D E VELT I N N+ A++
Sbjct 142 AWTESLTLVSQNHVPDAVWETVRPHFTDAELVELTLLITSINTWNRFAIAF 192
>gi|172059087|ref|YP_001806739.1| alkylhydroperoxidase [Burkholderia ambifaria MC40-6]
gi|171991604|gb|ACB62523.1| alkylhydroperoxidase like protein, AhpD family [Burkholderia
ambifaria MC40-6]
Length=158
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/114 (31%), Positives = 58/114 (51%), Gaps = 3/114 (2%)
Query 150 ALDPVTSELVRLRGAAQHNCRVCKSLREVSALDAGGSETLYGEIERFDTSVLLDVRAKAA 209
+L+P ELV++R + + C C ++ V A + G +E + + + R +AA
Sbjct 28 SLEPTLIELVKIRASQINACANCLNMHTVEAREQGETEQRINLLAAWREAPCYTDRERAA 87
Query 210 LRYADALI-WTPAHLAVDVA-VEVRSRFSDDEAVELTFDI-MRNASNKVAVSLG 260
LR+ DAL + H A + A + FS +E V+LT I + N N++AV G
Sbjct 88 LRWTDALTRLSEGHGAHEAAYAALNDHFSQEEQVKLTLMINVINGWNRLAVGFG 141
>gi|145299731|ref|YP_001142572.1| hypothetical protein ASA_2808 [Aeromonas salmonicida subsp. salmonicida
A449]
gi|142852503|gb|ABO90824.1| conserved hypothetical protein [Aeromonas salmonicida subsp.
salmonicida A449]
Length=197
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/134 (29%), Positives = 61/134 (46%), Gaps = 2/134 (1%)
Query 127 WDHNTDLSAAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSALDAGGS 186
W + L AAV + + +DPV LV +R + + CR C + ++ + GS
Sbjct 36 WGRSPRLFAAVATLYGVINRKRSPIDPVLRSLVTVRVSQLNWCRFCVDINAMTLIKRAGS 95
Query 187 ETLYGEIERFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAVEVRSRFSDDEAVELTFD 246
+ + TS L D R KA L Y +A+ ++ + A ++ F DD VELT
Sbjct 96 SDKVEALAHWRTSPLFDEREKAVLDYTEAMTGLDG-VSDEQAARLKPWFDDDAMVELTGL 154
Query 247 I-MRNASNKVAVSL 259
+ +N S K +L
Sbjct 155 VAFQNMSAKFNAAL 168
>gi|254249622|ref|ZP_04942942.1| hypothetical protein BCPG_04487 [Burkholderia cenocepacia PC184]
gi|124876123|gb|EAY66113.1| hypothetical protein BCPG_04487 [Burkholderia cenocepacia PC184]
Length=196
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/149 (29%), Positives = 65/149 (44%), Gaps = 9/149 (6%)
Query 134 SAAVFNGFL--PAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSALDAGGSETLYG 191
S +F FL + R A++ +LV LR + + C C + A G E
Sbjct 48 SPELFRKFLELSNLLRSSAIEESIRDLVSLRASQINGCAFCVDMHVKEARIHGERELRLH 107
Query 192 EIERFDTSVLLDVRAKAALRYADALIWTPAH-LAVDVAVEVRSRFSDDEAVELTFDIMR- 249
+ + S L R +AAL + +AL AH + DV VR + S+ E +LTF++M
Sbjct 108 HLATWRESTLFSPRERAALAWTEALTTLAAHGVPDDVYDRVRGQLSEKELSDLTFEVMAI 167
Query 250 NASNKVAVSLGADAPRVQQGTERYRIGLD 278
N N+ V+ R G+ GLD
Sbjct 168 NGWNRANVAF-----RTVPGSSDKAFGLD 191
>gi|334704325|ref|ZP_08520191.1| hypothetical protein AcavA_09823 [Aeromonas caviae Ae398]
Length=191
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/134 (30%), Positives = 62/134 (47%), Gaps = 2/134 (1%)
Query 127 WDHNTDLSAAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCRVCKSLREVSALDAGGS 186
W + L AAV + + +DPV LV +R + + CR C + ++ + GS
Sbjct 36 WGRSPRLFAAVATLYGVINRKRSPIDPVLRSLVTVRVSQLNWCRFCVDINAMTLVKRAGS 95
Query 187 ETLYGEIERFDTSVLLDVRAKAALRYADALIWTPAHLAVDVAVEVRSRFSDDEAVELTFD 246
+ R+ S L D R +A L YA+A+ ++ + A ++ F DD VELT
Sbjct 96 SDKVEALARWRDSPLFDERERAVLDYAEAMTGLDG-VSDEQAARLKPWFDDDALVELTGL 154
Query 247 I-MRNASNKVAVSL 259
I +N S K +L
Sbjct 155 IAFQNMSAKFNAAL 168
Lambda K H
0.320 0.135 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 455254791584
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40