BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2319c

Length=292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609456|ref|NP_216835.1|  hypothetical protein Rv2319c [Mycob...   578    3e-163
gi|121638205|ref|YP_978429.1|  hypothetical protein BCG_2340c [My...   575    3e-162
gi|289575010|ref|ZP_06455237.1|  conserved hypothetical protein [...   575    3e-162
gi|339295223|gb|AEJ47334.1|  hypothetical protein CCDC5079_2144 [...   518    5e-145
gi|289443836|ref|ZP_06433580.1|  conserved hypothetical protein [...   433    1e-119
gi|183983599|ref|YP_001851890.1|  hypothetical protein MMAR_3620 ...   429    3e-118
gi|240170966|ref|ZP_04749625.1|  hypothetical protein MkanA1_1676...   426    2e-117
gi|118616954|ref|YP_905286.1|  hypothetical protein MUL_1245 [Myc...   423    2e-116
gi|296166351|ref|ZP_06848786.1|  universal stress protein [Mycoba...   391    8e-107
gi|294994583|ref|ZP_06800274.1|  hypothetical protein Mtub2_08715...   343    1e-92 
gi|169630922|ref|YP_001704571.1|  hypothetical protein MAB_3843 [...   309    4e-82 
gi|118471262|ref|YP_885794.1|  universal stress protein family pr...   308    8e-82 
gi|258655462|ref|YP_003204618.1|  UspA domain-containing protein ...   234    1e-59 
gi|262203655|ref|YP_003274863.1|  UspA domain-containing protein ...   226    3e-57 
gi|336118843|ref|YP_004573615.1|  hypothetical protein MLP_31980 ...   226    4e-57 
gi|84496502|ref|ZP_00995356.1|  hypothetical protein JNB_03245 [J...   204    1e-50 
gi|152965172|ref|YP_001360956.1|  UspA domain-containing protein ...   201    9e-50 
gi|334564785|ref|ZP_08517776.1|  putative universal stress protei...   173    3e-41 
gi|336326692|ref|YP_004606658.1|  universal stress protein [Coryn...   161    1e-37 
gi|68537168|ref|YP_251873.1|  putative universal stress protein [...   159    4e-37 
gi|145222587|ref|YP_001133265.1|  UspA domain-containing protein ...   154    2e-35 
gi|315443052|ref|YP_004075931.1|  universal stress protein UspA-l...   153    3e-35 
gi|50084463|ref|YP_045973.1|  hypothetical protein ACIAD1277 [Aci...   151    1e-34 
gi|289754422|ref|ZP_06513800.1|  conserved hypothetical protein [...   148    9e-34 
gi|260904458|ref|ZP_05912780.1|  putative Usp family protein [Bre...   148    1e-33 
gi|111020001|ref|YP_702973.1|  hypothetical protein RHA1_ro03012 ...   146    3e-33 
gi|332670276|ref|YP_004453284.1|  UspA domain-containing protein ...   144    1e-32 
gi|213966452|ref|ZP_03394627.1|  putative universal stress protei...   143    3e-32 
gi|271964301|ref|YP_003338497.1|  hypothetical protein Sros_2796 ...   143    4e-32 
gi|226307542|ref|YP_002767502.1|  hypothetical protein RER_40550 ...   142    9e-32 
gi|229489291|ref|ZP_04383155.1|  universal stress protein [Rhodoc...   141    1e-31 
gi|237786624|ref|YP_002907329.1|  universal stress protein [Coryn...   137    2e-30 
gi|108800336|ref|YP_640533.1|  hypothetical protein Mmcs_3370 [My...   136    4e-30 
gi|337291876|ref|YP_004630897.1|  hypothetical protein CULC22_022...   134    2e-29 
gi|300859458|ref|YP_003784441.1|  hypothetical protein cpfrc_0204...   133    3e-29 
gi|145296979|ref|YP_001139800.1|  hypothetical protein cgR_2878 [...   132    4e-29 
gi|19554183|ref|NP_602185.1|  hypothetical protein NCgl2887 [Cory...   132    5e-29 
gi|62391837|ref|YP_227239.1|  hypothetical protein cg3316 [Coryne...   132    5e-29 
gi|334697847|gb|AEG82644.1|  hypothetical protein CULC809_02120 [...   132    6e-29 
gi|226366463|ref|YP_002784246.1|  Usp family protein [Rhodococcus...   130    3e-28 
gi|172041671|ref|YP_001801385.1|  putative universal stress prote...   129    4e-28 
gi|38234832|ref|NP_940599.1|  hypothetical protein DIP2297 [Coryn...   129    5e-28 
gi|340795956|ref|YP_004761419.1|  hypothetical protein CVAR_3004 ...   129    6e-28 
gi|118467904|ref|YP_889712.1|  universal stress protein family pr...   126    3e-27 
gi|119961252|ref|YP_945874.1|  universal stress family domain-con...   126    4e-27 
gi|25029383|ref|NP_739437.1|  hypothetical protein CE2827 [Coryne...   124    1e-26 
gi|296118488|ref|ZP_06837066.1|  putative universal stress protei...   121    1e-25 
gi|227834268|ref|YP_002835975.1|  universal stress protein [Coryn...   120    2e-25 
gi|227506307|ref|ZP_03936356.1|  universal stress protein [Coryne...   119    6e-25 
gi|116671639|ref|YP_832572.1|  UspA domain-containing protein [Ar...   117    2e-24 


>gi|15609456|ref|NP_216835.1| hypothetical protein Rv2319c [Mycobacterium tuberculosis H37Rv]
 gi|15841824|ref|NP_336861.1| universal stress protein [Mycobacterium tuberculosis CDC1551]
 gi|31793502|ref|NP_855995.1| hypothetical protein Mb2346c [Mycobacterium bovis AF2122/97]
 64 more sequence titles
 Length=292

 Score =  578 bits (1491),  Expect = 3e-163, Method: Compositional matrix adjust.
 Identities = 291/292 (99%), Positives = 292/292 (100%), Gaps = 0/292 (0%)

Query  1    VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60
            +TIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL
Sbjct  1    MTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60

Query  61   AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV  120
            AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV
Sbjct  61   AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV  120

Query  121  LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV  180
            LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV
Sbjct  121  LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV  180

Query  181  PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGN  240
            PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGN
Sbjct  181  PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGN  240

Query  241  GWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG  292
            GWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG
Sbjct  241  GWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG  292


>gi|121638205|ref|YP_978429.1| hypothetical protein BCG_2340c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224990699|ref|YP_002645386.1| hypothetical protein JTY_2334 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|121493853|emb|CAL72328.1| Hypothetical protein BCG_2340c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224773812|dbj|BAH26618.1| hypothetical protein JTY_2334 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|341602243|emb|CCC64917.1| hypothetical protein BCGM_2324c [Mycobacterium bovis BCG str. 
Moreau RDJ]
Length=292

 Score =  575 bits (1482),  Expect = 3e-162, Method: Compositional matrix adjust.
 Identities = 290/292 (99%), Positives = 291/292 (99%), Gaps = 0/292 (0%)

Query  1    VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60
            +TIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL
Sbjct  1    MTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60

Query  61   AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV  120
            AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEA VLVLGSFPSGRRARV
Sbjct  61   AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAGVLVLGSFPSGRRARV  120

Query  121  LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV  180
            LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV
Sbjct  121  LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV  180

Query  181  PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGN  240
            PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGN
Sbjct  181  PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGN  240

Query  241  GWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG  292
            GWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG
Sbjct  241  GWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG  292


>gi|289575010|ref|ZP_06455237.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|339632344|ref|YP_004723986.1| hypothetical protein MAF_23310 [Mycobacterium africanum GM041182]
 gi|289539441|gb|EFD44019.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|339331700|emb|CCC27401.1| hypothetical protein MAF_23310 [Mycobacterium africanum GM041182]
Length=292

 Score =  575 bits (1482),  Expect = 3e-162, Method: Compositional matrix adjust.
 Identities = 290/292 (99%), Positives = 291/292 (99%), Gaps = 0/292 (0%)

Query  1    VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60
            +TIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL
Sbjct  1    MTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60

Query  61   AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV  120
            AAASAREAQRYL RLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV
Sbjct  61   AAASAREAQRYLCRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV  120

Query  121  LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV  180
            LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV
Sbjct  121  LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV  180

Query  181  PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGN  240
            PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGN
Sbjct  181  PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGN  240

Query  241  GWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG  292
            GWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG
Sbjct  241  GWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG  292


>gi|339295223|gb|AEJ47334.1| hypothetical protein CCDC5079_2144 [Mycobacterium tuberculosis 
CCDC5079]
Length=260

 Score =  518 bits (1334),  Expect = 5e-145, Method: Compositional matrix adjust.
 Identities = 259/260 (99%), Positives = 260/260 (100%), Gaps = 0/260 (0%)

Query  33   VATIVRRHWPTPSLARVDAEYELWSEQLAAASAREAQRYLRRLADGIEVSYHHRAHRSVS  92
            +ATIVRRHWPTPSLARVDAEYELWSEQLAAASAREAQRYLRRLADGIEVSYHHRAHRSVS
Sbjct  1    MATIVRRHWPTPSLARVDAEYELWSEQLAAASAREAQRYLRRLADGIEVSYHHRAHRSVS  60

Query  93   AGLLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPRRYRCYTDRLT  152
            AGLLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPRRYRCYTDRLT
Sbjct  61   AGLLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPRRYRCYTDRLT  120

Query  153  RLSCGYSATSGSVDVVRRCGHLASRYGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWA  212
            RLSCGYSATSGSVDVVRRCGHLASRYGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWA
Sbjct  121  RLSCGYSATSGSVDVVRRCGHLASRYGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWA  180

Query  213  AQARELLEKLRINGVVSEDVVLQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFL  272
            AQARELLEKLRINGVVSEDVVLQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFL
Sbjct  181  AQARELLEKLRINGVVSEDVVLQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFL  240

Query  273  GSWSGKIIRYSPVPVLVLPG  292
            GSWSGKIIRYSPVPVLVLPG
Sbjct  241  GSWSGKIIRYSPVPVLVLPG  260


>gi|289443836|ref|ZP_06433580.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289570450|ref|ZP_06450677.1| hypothetical protein TBJG_00817 [Mycobacterium tuberculosis T17]
 gi|289750924|ref|ZP_06510302.1| hypothetical protein TBDG_01134 [Mycobacterium tuberculosis T92]
 gi|289754423|ref|ZP_06513801.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289416755|gb|EFD13995.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289544204|gb|EFD47852.1| hypothetical protein TBJG_00817 [Mycobacterium tuberculosis T17]
 gi|289691511|gb|EFD58940.1| hypothetical protein TBDG_01134 [Mycobacterium tuberculosis T92]
 gi|289695010|gb|EFD62439.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=221

 Score =  433 bits (1114),  Expect = 1e-119, Method: Compositional matrix adjust.
 Identities = 219/221 (99%), Positives = 220/221 (99%), Gaps = 0/221 (0%)

Query  1    VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60
            +TIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL
Sbjct  1    MTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60

Query  61   AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV  120
            AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV
Sbjct  61   AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV  120

Query  121  LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV  180
            LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV
Sbjct  121  LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV  180

Query  181  PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEK  221
            PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLE 
Sbjct  181  PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEN  221


 Score = 42.4 bits (98),  Expect = 0.083, Method: Compositional matrix adjust.
 Identities = 19/46 (42%), Positives = 29/46 (64%), Gaps = 0/46 (0%)

Query  246  LDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP  291
            LD  +  + E+L LG+ P G  ARV +GS + +++  SPVPV + P
Sbjct  96   LDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITP  141


>gi|183983599|ref|YP_001851890.1| hypothetical protein MMAR_3620 [Mycobacterium marinum M]
 gi|183176925|gb|ACC42035.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=290

 Score =  429 bits (1103),  Expect = 3e-118, Method: Compositional matrix adjust.
 Identities = 215/292 (74%), Positives = 251/292 (86%), Gaps = 2/292 (0%)

Query  1    VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60
            +T+VVGYLAG+VGPSALHLAVR AR   TSLTVATI+ + W TP LA+ D  Y  W+EQ+
Sbjct  1    MTVVVGYLAGRVGPSALHLAVRAARTLDTSLTVATILTKPWLTPPLAKGD--YSEWAEQV  58

Query  61   AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV  120
            A  S +EA RYLR +A GIEVSY HR HRSVS GL++VVEEL+AE+L+LGSFP+GRRARV
Sbjct  59   AEDSEKEAHRYLRTVATGIEVSYCHREHRSVSGGLIEVVEELDAEMLILGSFPNGRRARV  118

Query  121  LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV  180
            LIGSTAD +LHSSPVPVAI+PR+Y   TDRLTR++CGY+AT+ SV+VVRRC  LA +YGV
Sbjct  119  LIGSTADWVLHSSPVPVAISPRQYHSRTDRLTRITCGYAATTDSVEVVRRCAELARQYGV  178

Query  181  PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGN  240
            P+RVITFAVRGRTMYPPEVGLHAEA VLEAWA QAR +LE L+ +G+V ED VL+V+TGN
Sbjct  179  PLRVITFAVRGRTMYPPEVGLHAEALVLEAWAEQARGMLEMLQKDGIVEEDAVLEVITGN  238

Query  241  GWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG  292
            GW  ALDAADW+DGEILA+GTSP GD+ARVFLGS SGKIIR+SPVPVLVLPG
Sbjct  239  GWQHALDAADWEDGEILAVGTSPRGDIARVFLGSNSGKIIRHSPVPVLVLPG  290


>gi|240170966|ref|ZP_04749625.1| hypothetical protein MkanA1_16768 [Mycobacterium kansasii ATCC 
12478]
Length=290

 Score =  426 bits (1094),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 216/292 (74%), Positives = 250/292 (86%), Gaps = 2/292 (0%)

Query  1    VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60
            +++VVGYLAG+VGPSAL LAVR+AR   TSL VATIV + W   SL + D  YE W+++L
Sbjct  1    MSVVVGYLAGRVGPSALQLAVRMARTLNTSLRVATIVPKPWLPGSLTQPD--YEQWADEL  58

Query  61   AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV  120
            AA SA EAQRYLR+++DG+EVSY H  HRSVS GL++VVEE  AE+LVLGSFPSGRRARV
Sbjct  59   AADSAAEAQRYLRKVSDGVEVSYLHHEHRSVSGGLIEVVEEAHAEMLVLGSFPSGRRARV  118

Query  121  LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV  180
            LIGSTAD LLHSSPVPVAI+PR+Y  +T RLTRL+CGYSA   S +VVRRC  LA RYG+
Sbjct  119  LIGSTADWLLHSSPVPVAISPRQYDSHTGRLTRLTCGYSAAPDSAEVVRRCSELARRYGL  178

Query  181  PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGN  240
            P+RVITFAVRGRTMYPPEVGLHAE+SVLEAWAAQA+E+LEKL+ +GVV +DVVLQV+TGN
Sbjct  179  PLRVITFAVRGRTMYPPEVGLHAESSVLEAWAAQAQEMLEKLKTDGVVGKDVVLQVITGN  238

Query  241  GWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG  292
            GW  AL+  DWQDGEILALGTSP GD+ARVFLGS SGKIIR+SPVPVLVLPG
Sbjct  239  GWQHALEHTDWQDGEILALGTSPRGDIARVFLGSRSGKIIRHSPVPVLVLPG  290


>gi|118616954|ref|YP_905286.1| hypothetical protein MUL_1245 [Mycobacterium ulcerans Agy99]
 gi|118569064|gb|ABL03815.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=290

 Score =  423 bits (1087),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 212/292 (73%), Positives = 250/292 (86%), Gaps = 2/292 (0%)

Query  1    VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60
            +T+VVGYLAG+VGPSALHLAVR AR   TSLTVATI+ + W TP LA+ D  Y  W+EQ+
Sbjct  1    MTVVVGYLAGRVGPSALHLAVRAARTLDTSLTVATILTKPWLTPPLAKGD--YSEWAEQV  58

Query  61   AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV  120
            A  S +EA RYLR +A GIEVSY HR HRSVS GL++VVEEL+A++L+LGSFP+GRRARV
Sbjct  59   AEDSEKEAHRYLRTVATGIEVSYCHREHRSVSGGLIEVVEELDAQMLILGSFPNGRRARV  118

Query  121  LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV  180
            LIGSTAD +LHSSPVPVAI+PR+Y   TDRLTR++CGY+AT+ SV+VVRRC  LA +YGV
Sbjct  119  LIGSTADWVLHSSPVPVAISPRQYHSRTDRLTRITCGYAATTDSVEVVRRCAELARQYGV  178

Query  181  PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGN  240
            P+RVITFAVR RTMYPPEVGLHAEA VLEAWA QAR +LE L+ +G+V ED VL+V+TGN
Sbjct  179  PLRVITFAVRVRTMYPPEVGLHAEALVLEAWAEQARGMLEMLQKDGIVEEDAVLEVITGN  238

Query  241  GWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG  292
            GW  ALDAADW+DGEILA+GTSP GD+ARVFLGS SG+IIR+SPVPVLVLPG
Sbjct  239  GWQHALDAADWEDGEILAVGTSPRGDIARVFLGSNSGRIIRHSPVPVLVLPG  290


>gi|296166351|ref|ZP_06848786.1| universal stress protein [Mycobacterium parascrofulaceum ATCC 
BAA-614]
 gi|295898261|gb|EFG77832.1| universal stress protein [Mycobacterium parascrofulaceum ATCC 
BAA-614]
Length=292

 Score =  391 bits (1004),  Expect = 8e-107, Method: Compositional matrix adjust.
 Identities = 198/292 (68%), Positives = 232/292 (80%), Gaps = 0/292 (0%)

Query  1    VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60
            +T+VVGY AGKVG S LHL VR+AR   TSLTVATIV + W TPS ARVDAE+ELW++ L
Sbjct  1    MTVVVGYRAGKVGLSGLHLGVRIARTRGTSLTVATIVPKPWLTPSRARVDAEFELWADAL  60

Query  61   AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV  120
            AA SA+EA  +L  +A+G+ V Y HRAH SVS GLLDV+ E++A+VLVLGS PSG R +V
Sbjct  61   AAESAKEAAGFLDTVAEGVAVDYVHRAHGSVSGGLLDVIHEVDADVLVLGSLPSGGRGQV  120

Query  121  LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV  180
            LIGSTAD LLH+SPVPVAI+PR YR +  +LTRL+C YSAT  SVDVV+RC     R+GV
Sbjct  121  LIGSTADWLLHASPVPVAISPRNYRAHQGKLTRLTCAYSATPDSVDVVKRCFEFGQRFGV  180

Query  181  PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGN  240
            P+RVITFAVRG+TMYPPEVGL  E  VL AWA+Q R +LE+L+  GVV EDV LQVVTG 
Sbjct  181  PVRVITFAVRGKTMYPPEVGLEVEDQVLRAWASQVRGILEELKTTGVVGEDVALQVVTGR  240

Query  241  GWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG  292
             W +AL+ ADWQ+GEILALGT P GD+ RVFLGS S KIIR SPVPVLVLPG
Sbjct  241  SWNEALEKADWQEGEILALGTRPRGDIRRVFLGSRSTKIIRESPVPVLVLPG  292


>gi|294994583|ref|ZP_06800274.1| hypothetical protein Mtub2_08715 [Mycobacterium tuberculosis 
210]
Length=177

 Score =  343 bits (881),  Expect = 1e-92, Method: Compositional matrix adjust.
 Identities = 169/169 (100%), Positives = 169/169 (100%), Gaps = 0/169 (0%)

Query  124  STADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGVPMR  183
            STADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGVPMR
Sbjct  9    STADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGVPMR  68

Query  184  VITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGNGWA  243
            VITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGNGWA
Sbjct  69   VITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGNGWA  128

Query  244  QALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG  292
            QALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG
Sbjct  129  QALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG  177


 Score = 41.2 bits (95),  Expect = 0.19, Method: Compositional matrix adjust.
 Identities = 19/46 (42%), Positives = 29/46 (64%), Gaps = 0/46 (0%)

Query  96   LDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITP  141
            LD  +  + E+L LG+ P G  ARV +GS + +++  SPVPV + P
Sbjct  131  LDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP  176


>gi|169630922|ref|YP_001704571.1| hypothetical protein MAB_3843 [Mycobacterium abscessus ATCC 19977]
 gi|169242889|emb|CAM63917.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=293

 Score =  309 bits (791),  Expect = 4e-82, Method: Compositional matrix adjust.
 Identities = 158/293 (54%), Positives = 211/293 (73%), Gaps = 1/293 (0%)

Query  1    VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60
            +T+VVGYL+GK G  ALHLAV  AR+ +TSLTV T+V + W T S A++DAEY  W+++L
Sbjct  1    MTVVVGYLSGKGGKGALHLAVESARVLETSLTVTTVVPKPWTTLSKAKIDAEYAQWAQKL  60

Query  61   AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV  120
            +  S  EA  YL ++  GI+V++H+ AHRSVS GLL+ VE  +A+VLV+GS   GR  +V
Sbjct  61   SDDSKSEATAYLEKIGAGIDVTFHNVAHRSVSGGLLEAVEASDADVLVVGSASEGRLGQV  120

Query  121  LIGSTADRLLHSSPVPVAITPRRYR-CYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYG  179
            ++GST DRLLHSSPVP+AI+PR YR      ++R++CGY  T  +VDVV++   L  R  
Sbjct  121  VLGSTGDRLLHSSPVPLAISPRGYRGSRAGTVSRVTCGYPGTEDAVDVVQQAVRLTQRLH  180

Query  180  VPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTG  239
             P+RV+TFAVRGRTM    VG  AE +VL +W  Q+ E L +LR  G+V+ DV L+VVTG
Sbjct  181  APLRVVTFAVRGRTMLTAGVGPEAEDAVLASWVTQSEEALSELRQAGIVTADVELKVVTG  240

Query  240  NGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG  292
            + W  ALD A+W DGE+L LG+ P   VARVFLGS + KI+R+SPVPV+V+PG
Sbjct  241  DTWDDALDNAEWNDGELLVLGSRPHSAVARVFLGSRATKIVRHSPVPVVVMPG  293


>gi|118471262|ref|YP_885794.1| universal stress protein family protein [Mycobacterium smegmatis 
str. MC2 155]
 gi|118172549|gb|ABK73445.1| universal stress protein family protein [Mycobacterium smegmatis 
str. MC2 155]
Length=293

 Score =  308 bits (788),  Expect = 8e-82, Method: Compositional matrix adjust.
 Identities = 159/293 (55%), Positives = 208/293 (71%), Gaps = 1/293 (0%)

Query  1    VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60
            +T+VVGYL GK G S LHLAV  AR  +TSL VAT+V R W TPS AR+DAEY  ++ QL
Sbjct  1    MTVVVGYLTGKAGASPLHLAVGAARTLQTSLAVATVVPRPWMTPSPARIDAEYAQYAAQL  60

Query  61   AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV  120
            A+ SA +A++ +  L   +EV++H  AHRSVS GL++ VE L AE LVLGS   G+  +V
Sbjct  61   ASTSAEQARQVISELDSELEVTFHKFAHRSVSDGLMEAVESLNAEALVLGSAADGKLGQV  120

Query  121  LIGSTADRLLHSSPVPVAITPRRY-RCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYG  179
            ++GSTADRLLHS PVP+ ++PR Y R  +  L+R++  Y  T  +VDVV R   L  R G
Sbjct  121  VVGSTADRLLHSCPVPLVVSPRGYRRPRSGGLSRITVAYPGTRDAVDVVERIAALTQRLG  180

Query  180  VPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTG  239
            V MRV+TFAVRGR+MYPP VGL  E  +L+ W  QA++ L +L  +GV+ EDV + V +G
Sbjct  181  VTMRVVTFAVRGRSMYPPLVGLSKEDLILQEWIEQAQDSLRRLATDGVIGEDVEVVVASG  240

Query  240  NGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG  292
            + W +ALD+ +W +GE+LA+GTSP G V RVFLG    KI+RYSP+PVLVLPG
Sbjct  241  SAWDEALDSIEWIEGEVLAIGTSPAGAVRRVFLGERGTKILRYSPLPVLVLPG  293


>gi|258655462|ref|YP_003204618.1| UspA domain-containing protein [Nakamurella multipartita DSM 
44233]
 gi|258558687|gb|ACV81629.1| UspA domain protein [Nakamurella multipartita DSM 44233]
Length=320

 Score =  234 bits (597),  Expect = 1e-59, Method: Compositional matrix adjust.
 Identities = 126/288 (44%), Positives = 181/288 (63%), Gaps = 5/288 (1%)

Query  1    VTIVVGYLAGKVGPSALHLAVRVARMHKTS-LTVATIVRRHWPTPSLARVDAEYELWSEQ  59
            +TIVVG+   K G  AL LAV +AR  +   + V T+  +HW TPS+A+VDAE++ W+  
Sbjct  1    MTIVVGFSPHKGGRDALELAVLLARSGRPEPVVVTTVTPQHWTTPSMAKVDAEFQAWATA  60

Query  60   LAAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRAR  119
               A+  +A++++   A  + VSY   A RSV A L     + E ++LVLGS   GR  +
Sbjct  61   QGEAALDQARQFMAAKAPELSVSYGQVAGRSVPAALSRSCADAEGDLLVLGSSRDGRSGQ  120

Query  120  VLIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYG  179
            V++GST++ LLHSSP+PVAI PR YR +   ++R+SC YS T  S D++     ++ R G
Sbjct  121  VVLGSTSEPLLHSSPLPVAIAPRGYRAHCTAISRMSCSYSGTEESGDLLLAVAGMSRRIG  180

Query  180  VPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQAREL----LEKLRINGVVSEDVVLQ  235
              +RV+TF VRGRTMYPPEVGL AE  VL  W  Q R+     L++L    ++      +
Sbjct  181  GALRVVTFGVRGRTMYPPEVGLGAEDMVLSQWTEQVRQFQRAALDRLSELALLPASASAE  240

Query  236  VVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYS  283
            + TG+ WA  +D  +W+ GE+L +G+SP G +ARVF+GS + KIIRYS
Sbjct  241  IATGSDWADVMDELEWEPGEVLVVGSSPLGTLARVFVGSRATKIIRYS  288


>gi|262203655|ref|YP_003274863.1| UspA domain-containing protein [Gordonia bronchialis DSM 43247]
 gi|262087002|gb|ACY22970.1| UspA domain protein [Gordonia bronchialis DSM 43247]
Length=294

 Score =  226 bits (577),  Expect = 3e-57, Method: Compositional matrix adjust.
 Identities = 120/293 (41%), Positives = 181/293 (62%), Gaps = 2/293 (0%)

Query  1    VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60
            +TI+VGY+ G+ G   + L   +A    T L VAT+V R W TPS A+VDAE+  W++ +
Sbjct  1    MTILVGYVPGEGGAGGVQLGAMLAESLHTDLVVATVVPRPWTTPSPAKVDAEFVAWTDNV  60

Query  61   AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV  120
               +  E   Y++     +   +    HR+ S+ LL   +E++A+ LV+ S   G+  ++
Sbjct  61   VERAHAEVTEYMQIYPPQLRWRFTRLDHRTASSALLSYAQEIDADALVVSSTGDGQPGQI  120

Query  121  LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDV--VRRCGHLASRY  178
            ++GSTAD LLH S VPV I+PR YR   D L +     +A +GS DV  ++R   L+ R 
Sbjct  121  VVGSTADSLLHRSTVPVGISPRGYRSPKDGLLKRVTVATAAAGSADVSVIQRARELSDRM  180

Query  179  GVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVT  238
               +RV+TFAVRG  MYPP VG+  E +V++ W +QA E   +L ++GV+       V +
Sbjct  181  DAELRVVTFAVRGGAMYPPLVGISTEDAVVDQWKSQATEAHRQLVMDGVIDSRTPCMVAS  240

Query  239  GNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP  291
            G GW +A+DA DW DGE+L +G++  G +ARVF+G+ + K+IR+SPVPV+VLP
Sbjct  241  GRGWREAVDAVDWLDGEVLFIGSTREGLLARVFIGTRATKLIRHSPVPVIVLP  293


 Score = 48.1 bits (113),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 46/143 (33%), Positives = 65/143 (46%), Gaps = 19/143 (13%)

Query  9    AGKVGPSALHLAVRVARMHKTSLTVATIVRR----HWPTPSLARVDAEYELWSEQLAAAS  64
            AG    S +  A  ++      L V T   R    + P   ++  DA  + W  Q     
Sbjct  162  AGSADVSVIQRARELSDRMDAELRVVTFAVRGGAMYPPLVGISTEDAVVDQWKSQ-----  216

Query  65   AREAQRYLRRLADGIEVSYHHRAHRSVSAG-----LLDVVEELEAEVLVLGSFPSGRRAR  119
            A EA R L  + DG+      R    V++G      +D V+ L+ EVL +GS   G  AR
Sbjct  217  ATEAHRQL--VMDGV---IDSRTPCMVASGRGWREAVDAVDWLDGEVLFIGSTREGLLAR  271

Query  120  VLIGSTADRLLHSSPVPVAITPR  142
            V IG+ A +L+  SPVPV + PR
Sbjct  272  VFIGTRATKLIRHSPVPVIVLPR  294


>gi|336118843|ref|YP_004573615.1| hypothetical protein MLP_31980 [Microlunatus phosphovorus NM-1]
 gi|334686627|dbj|BAK36212.1| hypothetical protein MLP_31980 [Microlunatus phosphovorus NM-1]
Length=299

 Score =  226 bits (575),  Expect = 4e-57, Method: Compositional matrix adjust.
 Identities = 128/292 (44%), Positives = 183/292 (63%), Gaps = 1/292 (0%)

Query  1    VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60
            +T++VGY+  K G  +L L V+ A      + V T+V R W TPSLA+VDAE+  ++  L
Sbjct  1    MTVLVGYVPHKGGRGSLDLGVQFAYALGQPMRVVTVVPRQWSTPSLAKVDAEFGEYARLL  60

Query  61   AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV  120
               +  +A+ YL   +  +++SY     RS++A LL+  E+  A VLVLGS   G   R+
Sbjct  61   GEHAEAKAREYLTDTSVEVDISYCALPGRSITAALLEAAEDCAASVLVLGSSTDGAVGRI  120

Query  121  LIGSTADRLLHSSPVPVAITPRRYRCYT-DRLTRLSCGYSATSGSVDVVRRCGHLASRYG  179
            ++GST D+LLH+SPVP+A++PR YR    D  +R++C +S    SV VV     L  R G
Sbjct  121  VVGSTTDKLLHASPVPLALSPRGYRSVAADGFSRVTCAFSDAEESVKVVGAAVALGRRVG  180

Query  180  VPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTG  239
               RV +F VRG TMYPPEVG+ AE SVL++W  QA     +LR +GV+ +D    +   
Sbjct  181  ARTRVASFGVRGATMYPPEVGISAEDSVLDSWLQQATHAQRELRADGVIGDDTEAVIAAS  240

Query  240  NGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP  291
            + WA +L + +W+  E+L LG+S  G +ARVFLGS + K+IR+SPVPVLVLP
Sbjct  241  SSWADSLSSIEWERNELLVLGSSTVGPIARVFLGSRATKLIRHSPVPVLVLP  292


 Score = 40.0 bits (92),  Expect = 0.39, Method: Compositional matrix adjust.
 Identities = 39/103 (38%), Positives = 53/103 (52%), Gaps = 9/103 (8%)

Query  42   PTPSLARVDAEYELWSEQLAAASAREAQRYLRRLADGI--EVSYHHRAHRSVSAGLLDVV  99
            P   ++  D+  + W +Q     A  AQR LR  ADG+  + +    A  S  A  L  +
Sbjct  198  PEVGISAEDSVLDSWLQQ-----ATHAQRELR--ADGVIGDDTEAVIAASSSWADSLSSI  250

Query  100  EELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPR  142
            E    E+LVLGS   G  ARV +GS A +L+  SPVPV + PR
Sbjct  251  EWERNELLVLGSSTVGPIARVFLGSRATKLIRHSPVPVLVLPR  293


>gi|84496502|ref|ZP_00995356.1| hypothetical protein JNB_03245 [Janibacter sp. HTCC2649]
 gi|84383270|gb|EAP99151.1| hypothetical protein JNB_03245 [Janibacter sp. HTCC2649]
Length=296

 Score =  204 bits (520),  Expect = 1e-50, Method: Compositional matrix adjust.
 Identities = 115/296 (39%), Positives = 170/296 (58%), Gaps = 5/296 (1%)

Query  1    VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60
            +T++VG+  G    S L LA  +AR     L + ++V   WPTP     D ++  WS + 
Sbjct  1    MTLLVGFRGGADDLSGLELAATLARSSGVPLEILSVVPASWPTPIAGAADRDFARWSSEQ  60

Query  61   AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV  120
              A+ REA++ +  +   +E +    + RSV+ GLLD V E  A+++V+GS       +V
Sbjct  61   GDAAVREAEKLVAEICPDLETTTRWTSSRSVATGLLDAVAEAGADMIVIGSRSDAGHGQV  120

Query  121  LIGSTADRLLHSSPVPVAITPRRY-RCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYG  179
             +GS A RLLHSS VPVA+  R Y +    R+ R++C +     S+  + R   + +  G
Sbjct  121  NVGSIASRLLHSSRVPVALATRGYHQSEAARVRRVTCAFRGDESSLSTLERTAIICTEVG  180

Query  180  VPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQAR----ELLEKLRINGVVSEDVVLQ  235
              +RV TFAVRGRTMYPPEVG+ AE +VL AW  QA     + +E L+  G   E +   
Sbjct  181  AELRVATFAVRGRTMYPPEVGVAAEDAVLHAWLEQAGRAQVDAVEGLKATGTAPEALTTV  240

Query  236  VVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP  291
            V  G  W  ALDA  W+  ++L +G+S  G + R+FLGS + KI+R+SPVPV+V+P
Sbjct  241  VGAGRSWTAALDAVGWERDDVLVVGSSREGRLERLFLGSSATKIVRHSPVPVIVVP  296


>gi|152965172|ref|YP_001360956.1| UspA domain-containing protein [Kineococcus radiotolerans SRS30216]
 gi|151359689|gb|ABS02692.1| UspA domain protein [Kineococcus radiotolerans SRS30216]
Length=293

 Score =  201 bits (512),  Expect = 9e-50, Method: Compositional matrix adjust.
 Identities = 130/295 (45%), Positives = 175/295 (60%), Gaps = 5/295 (1%)

Query  1    VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60
            +T++  YL GK G + L LA ++AR     L+VAT++   W   + A VDA+ E WS  L
Sbjct  1    MTVLAAYLPGKGGRATLDLAAQLARGLGVPLSVATVLPGPWDATTPATVDAQLEGWSAVL  60

Query  61   AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV  120
            AA++   A+ +L R A G EV +  R  RSV A L+D+     A  LVLGS P GR  +V
Sbjct  61   AASAESSARAHLARTAPGAEVRFLARPGRSVPATLVDLAAGTGAAALVLGSSPRGRPGQV  120

Query  121  LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV  180
            ++GSTA RLLHSSP+ VA+ PR +R       R++C  +   G  +VV R    A R G 
Sbjct  121  VVGSTAGRLLHSSPLSVALAPRGHRGGGAGTPRVTCAAAGEDG--EVVARARRFADRVGA  178

Query  181  PMRVITFAVRGRTMYPPEV---GLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVV  237
             +RV+T AVRG   + P V   G  AE  VL+AW  QA   L  L   G +  +    V 
Sbjct  179  RLRVLTLAVRGPAPWAPAVSVLGPRAEEEVLDAWTEQAHRSLRVLSEEGALPPEAETAVG  238

Query  238  TGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG  292
             G GW +ALDA DW+ GE+L +G+ P G VARVFLGS + +I+R++PVPV+VLPG
Sbjct  239  AGQGWREALDAVDWEPGELLVVGSRPHGPVARVFLGSRATRILRHAPVPVVVLPG  293


>gi|334564785|ref|ZP_08517776.1| putative universal stress protein [Corynebacterium bovis DSM 
20582]
Length=315

 Score =  173 bits (438),  Expect = 3e-41, Method: Compositional matrix adjust.
 Identities = 103/302 (35%), Positives = 162/302 (54%), Gaps = 18/302 (5%)

Query  3    IVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELW--SEQL  60
            I+V +     G      A  +AR     +   T++ R W      R ++++E W  +E  
Sbjct  18   ILVTWRPESTGTECADYAAWLARTQPVVVRTVTVISRVWSPQPNGRTNSDFERWLAAEST  77

Query  61   A-AASAREAQRYLRRLADGIEVSYHHRAHRSV-------SAGLLDVVEELEAEVLVLGSF  112
            A AASAR+A R     A G+  S       SV       +  L+   E+ +A++++LGS 
Sbjct  78   ACAASARDALR-----AAGVPASMIDPDQPSVVEIDHSETTALISAAEDFDADLMLLGSH  132

Query  113  PSGRRARVLIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCG  172
            P+  R R  IGSTAD LLH +P+P+ + PR+ +     +TR++C Y  T  S   +R   
Sbjct  133  PAAPRGRFRIGSTADALLHCAPLPLGLAPRQPKLSKRGVTRVNCSYVDTEQSHQALRHAA  192

Query  173  HLASRYGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSE--  230
             LA R+GVP+R++ F+ RG TMYP EV     + ++  W  QA  LL++ R   +     
Sbjct  193  DLAHRWGVPLRLVAFSPRGATMYPTEVSFDESSDMMVEWREQALALLDRGRDRALERHGD  252

Query  231  -DVVLQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLV  289
              V+ +  +G GW+ A++A  W+ G++L LG+S  GD  RVF+G  + +I+R+SP PVL+
Sbjct  253  LHVLTETGSGYGWSGAMNALKWKKGDLLVLGSSVLGDFNRVFIGPSTNQIVRHSPAPVLI  312

Query  290  LP  291
             P
Sbjct  313  SP  314


>gi|336326692|ref|YP_004606658.1| universal stress protein [Corynebacterium resistens DSM 45100]
 gi|336102674|gb|AEI10494.1| universal stress protein [Corynebacterium resistens DSM 45100]
Length=318

 Score =  161 bits (407),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 99/298 (34%), Positives = 158/298 (54%), Gaps = 10/298 (3%)

Query  3    IVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQLAA  62
            +++ +        A  +A  V R  +  +  AT++ R W     A+   EY  W      
Sbjct  21   VLMAWRPQSTSDEAAEVAAWVGRTEEIRVRAATVIPRAWEIQPGAQEFQEYRNWVMAETQ  80

Query  63   ASAREAQRYLRR--LADGIEVSYHHRAHRSVSAG----LLDVVEELEAEVLVLGSFPSGR  116
            A    A   L +  L  G+ ++    A   ++      L+   E+ EA+ L+LGS P+  
Sbjct  81   ACMNAALSALGKAGLPQGM-LAEEDPAVVDIAPTETKVLIKAAEDFEADFLLLGSHPAAP  139

Query  117  RARVLIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLAS  176
            R+R  +GSTAD LLH +P+PV + PR  +   + +TR+SC Y  T  S + +RR   LA+
Sbjct  140  RSRFRMGSTADALLHCAPLPVLLAPRSPKLAKNGVTRVSCSYVDTVQSHEALRRASDLAA  199

Query  177  RYGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLR---INGVVSEDVV  233
            R+ VP+R++ F+  G TMYP  V     + ++  W  QA  LL++ R   +N   +  V 
Sbjct  200  RWNVPLRLVAFSPSGATMYPTNVPFDDNSDMMVEWREQALALLDRGRDRALNRHPNLKVQ  259

Query  234  LQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP  291
            L V +G GW+ A++A  W+ G++L +G+S  G   RVF+G  + +I+R+SPVPVLV P
Sbjct  260  LDVGSGYGWSGAINALKWKKGDLLVMGSSELGQFNRVFIGPSTNQILRHSPVPVLVSP  317


>gi|68537168|ref|YP_251873.1| putative universal stress protein [Corynebacterium jeikeium K411]
 gi|260579529|ref|ZP_05847400.1| universal stress protein [Corynebacterium jeikeium ATCC 43734]
 gi|68264767|emb|CAI38255.1| putative universal stress protein [Corynebacterium jeikeium K411]
 gi|258602300|gb|EEW15606.1| universal stress protein [Corynebacterium jeikeium ATCC 43734]
Length=308

 Score =  159 bits (402),  Expect = 4e-37, Method: Compositional matrix adjust.
 Identities = 98/288 (35%), Positives = 155/288 (54%), Gaps = 16/288 (5%)

Query  13   GPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQLAAASAREAQRYL  72
            G  A  +A  + R    +L  AT++ R W        D+ Y  W E+ + A +  AQ+ L
Sbjct  23   GDEAAQVAAWIGRTETIALRTATVISRSWTAQPELEFDS-YSEWIEKESKAVSSAAQKAL  81

Query  73   RRL--------ADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARVLIGS  124
                       A+   V+  H    S +  L+D   E  A+++VLGS P+   +R  IGS
Sbjct  82   ALAKLPEKMLDAEPSTVTVDH----SETKALIDAAAEFNADMMVLGSHPAAPHSRFRIGS  137

Query  125  TADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGVPMRV  184
            TAD LLH +P+P+ + PR  +     +TR++C Y  T  S + +RR   LA R+ VP+R+
Sbjct  138  TADALLHYAPLPLLLAPRTPKLSKRGVTRVNCSYIDTDQSHEALRRAADLAHRWNVPLRL  197

Query  185  ITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLR---INGVVSEDVVLQVVTGNG  241
            + F+ RG TMYP E      + ++  W  QA  LL++ R   +N      V ++V +G G
Sbjct  198  VAFSPRGATMYPTETEFIDNSDMMVEWREQALALLDRGRDRALNRHSDLTVQMEVGSGYG  257

Query  242  WAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLV  289
            W+ A++A  W+ G++L +G+S  G   RVF+G  + +I+R+SPVPVL+
Sbjct  258  WSGAINALKWKKGDLLVMGSSTLGGFHRVFIGPSTNQILRHSPVPVLL  305


>gi|145222587|ref|YP_001133265.1| UspA domain-containing protein [Mycobacterium gilvum PYR-GCK]
 gi|145215073|gb|ABP44477.1| UspA domain protein [Mycobacterium gilvum PYR-GCK]
Length=295

 Score =  154 bits (389),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 99/295 (34%), Positives = 160/295 (55%), Gaps = 9/295 (3%)

Query  1    VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60
            +TI+ G+ A   GP+ LHLA ++AR     +    IV R WP       D   + +   +
Sbjct  1    MTIIAGFSASGQGPAPLHLAAQLARCTGERIVAVAIVERQWPQ----NADPLEDEYLNYV  56

Query  61   AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV  120
             A + +  +  + +L   ++V        SV +GL ++ EE+ A+V+V+GS  SG   R+
Sbjct  57   GAQAQKSLKEMVDKLPGDLDVWRMVHQAESVPSGLTELAEEMNADVVVVGSSSSGLLGRI  116

Query  121  LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV  180
             +GS  DRL+H++ VPVAI PR Y     R+ RL+  Y   +    +V     LA R+  
Sbjct  117  ALGSVTDRLVHTAAVPVAIAPRGYPLQDSRIERLTVAYGGHADEGGLVAAGAELARRWSA  176

Query  181  PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARE----LLEKLRINGVVSEDVVLQV  236
             +R+ +F VR  TM+   +   AE  V++ W  + +E     LE +R +GV + D  + +
Sbjct  177  TLRIASFTVRPVTMFSGAIETSAEDLVVQQWVRRTQEKIAAQLEAVR-SGVDTLDAEVVI  235

Query  237  VTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP  291
              G  W  A++A DW  G++L LG+   G VA+VFLGS + +I+R+SPVP +++P
Sbjct  236  GAGATWRDAVEAIDWGSGDVLVLGSGAAGQVAQVFLGSAAARILRHSPVPTMIVP  290


 Score = 45.8 bits (107),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 3/50 (6%)

Query  97   DVVEELE---AEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPRR  143
            D VE ++    +VLVLGS  +G+ A+V +GS A R+L  SPVP  I PRR
Sbjct  243  DAVEAIDWGSGDVLVLGSGAAGQVAQVFLGSAAARILRHSPVPTMIVPRR  292


>gi|315443052|ref|YP_004075931.1| universal stress protein UspA-like protein [Mycobacterium sp. 
Spyr1]
 gi|315261355|gb|ADT98096.1| universal stress protein UspA-like protein [Mycobacterium sp. 
Spyr1]
Length=295

 Score =  153 bits (386),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 99/295 (34%), Positives = 159/295 (54%), Gaps = 9/295 (3%)

Query  1    VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60
            +TI+ G+ A   GP+ LHLA ++AR     +    IV R WP       D   + +   +
Sbjct  1    MTIIAGFSASGQGPAPLHLAAQLARCTGERIVAVAIVERQWPQ----NADPLEDEYLNYV  56

Query  61   AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV  120
             A + +  +  + +L   ++V        SV +GL ++ EE+ A+V+V+GS  SG   R+
Sbjct  57   GAQAQKSLKEMVDKLPGDLDVWRMVHQAESVPSGLTELAEEMNADVVVVGSSSSGLLGRI  116

Query  121  LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV  180
             +GS  DRL+H++ VPVAI PR Y     R+ RL+  Y        +V     LA R+  
Sbjct  117  ALGSVTDRLVHTAAVPVAIAPRGYPLQDSRIERLTVAYGGHVDEGGLVAAGAELARRWSA  176

Query  181  PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARE----LLEKLRINGVVSEDVVLQV  236
             +R+ +F VR  TM+   +   AE  V++ W  + +E     LE +R +GV + D  + +
Sbjct  177  TLRIASFTVRPVTMFSGAIETSAEDLVVQQWVRRTQEKIAAQLEAVR-SGVDTLDAEVVI  235

Query  237  VTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP  291
              G  W  A++A DW  G++L LG+   G VA+VFLGS + +I+R+SPVP +++P
Sbjct  236  GAGATWRDAVEAIDWGSGDVLVLGSGAAGQVAQVFLGSAAARILRHSPVPTMIVP  290


 Score = 45.8 bits (107),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 3/50 (6%)

Query  97   DVVEELE---AEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPRR  143
            D VE ++    +VLVLGS  +G+ A+V +GS A R+L  SPVP  I PRR
Sbjct  243  DAVEAIDWGSGDVLVLGSGAAGQVAQVFLGSAAARILRHSPVPTMIVPRR  292


>gi|50084463|ref|YP_045973.1| hypothetical protein ACIAD1277 [Acinetobacter sp. ADP1]
 gi|49530439|emb|CAG68151.1| conserved hypothetical protein [Acinetobacter sp. ADP1]
Length=295

 Score =  151 bits (381),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 100/302 (34%), Positives = 150/302 (50%), Gaps = 22/302 (7%)

Query  1    VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60
            +  +VGY     G  AL L V +A M +  L V  IV + W   +LA+ D +Y+ +    
Sbjct  1    MKFLVGYSNDSSGKDALKLGVALAEMTQGKLIVCHIVAKTWHNIALAKFDEDYDQFL---  57

Query  61   AAASAREAQRYLR--RLA--DGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGR  116
                  EAQ+ L   +LA    IE  Y  R   S+S GL    +EL  + +V+       
Sbjct  58   ----CDEAQKALDDAKLAVPSHIEARYIARTALSISEGLKQTAKELSVDCMVISGARIAI  113

Query  117  RARVLIGSTADRLLHSSPVPVAITPRRY---RCYTDRLTRLSCGYSATSGSVDVVRRCGH  173
            + +   G+ AD LL+   +PVA+ P+ +   + +T  LTRLSC  S +  S ++    G 
Sbjct  114  KGQFFSGTVADELLNQLSLPVALAPKGFAKNQGFTSPLTRLSCAVSGSDQSCNLAISAGE  173

Query  174  LASRYGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVV--SED  231
             A  + VP+R +TFAVR R + P   G  AE  V+  W    RE +E            D
Sbjct  174  WAEIFNVPLRFVTFAVRDRDITPTAAGFDAENMVINEW----REQIEAEYAQATQHWESD  229

Query  232  VVLQVVTGNG--WAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLV  289
            V + +  G+G  W +++ + DWQ  E+L +GT+  G   +V +G  + KIIRY+ VP LV
Sbjct  230  VPISLEIGDGPTWKESIQSIDWQASELLIVGTTTSGIFKQVLVGKNAEKIIRYASVPRLV  289

Query  290  LP  291
            LP
Sbjct  290  LP  291


 Score = 40.4 bits (93),  Expect = 0.32, Method: Compositional matrix adjust.
 Identities = 29/109 (27%), Positives = 54/109 (50%), Gaps = 8/109 (7%)

Query  37   VRRHWPTPSLARVDAEYEL---WSEQLAAASAREAQRYLRRLADGIEVSYHHRAHRSVSA  93
            VR    TP+ A  DAE  +   W EQ+ A  A+  Q +   +   +E+        S+ +
Sbjct  189  VRDRDITPTAAGFDAENMVINEWREQIEAEYAQATQHWESDVPISLEIGDGPTWKESIQS  248

Query  94   GLLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPR  142
                 ++   +E+L++G+  SG   +VL+G  A++++  + VP  + PR
Sbjct  249  -----IDWQASELLIVGTTTSGIFKQVLVGKNAEKIIRYASVPRLVLPR  292


>gi|289754422|ref|ZP_06513800.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289695009|gb|EFD62438.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=82

 Score =  148 bits (374),  Expect = 9e-34, Method: Compositional matrix adjust.
 Identities = 72/72 (100%), Positives = 72/72 (100%), Gaps = 0/72 (0%)

Query  221  KLRINGVVSEDVVLQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKII  280
            KLRINGVVSEDVVLQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKII
Sbjct  11   KLRINGVVSEDVVLQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKII  70

Query  281  RYSPVPVLVLPG  292
            RYSPVPVLVLPG
Sbjct  71   RYSPVPVLVLPG  82


 Score = 42.0 bits (97),  Expect = 0.11, Method: Compositional matrix adjust.
 Identities = 19/46 (42%), Positives = 29/46 (64%), Gaps = 0/46 (0%)

Query  96   LDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITP  141
            LD  +  + E+L LG+ P G  ARV +GS + +++  SPVPV + P
Sbjct  36   LDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP  81


>gi|260904458|ref|ZP_05912780.1| putative Usp family protein [Brevibacterium linens BL2]
Length=304

 Score =  148 bits (373),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 102/296 (35%), Positives = 160/296 (55%), Gaps = 9/296 (3%)

Query  1    VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60
            ++IVVG   G+    A+ L V +AR +   L    I    WP  S A  ++EY+     +
Sbjct  1    MSIVVGIAPGQDNRPAVELGVVLARSYGHRLVAVAIDSAAWPM-SPALFESEYQKKLRNV  59

Query  61   AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV  120
            A A+  E +  L    D IE      + RS   GLL++ ++  A  LV+G    G+  R+
Sbjct  60   AEAALDEVRALL---PDDIESECLVHSARSSRRGLLEMCQKENAFRLVVGPAADGKPGRI  116

Query  121  LIGSTADRLLHSSPVPVAITPRRYRCYTD-RLTRLSCGYSATSGSVDVVRRCGHLASRYG  179
             +GS +  LLHS+ +PVA+ P  YR   + RL RL+  YS +S S D++     +++  G
Sbjct  117  ALGSVSTGLLHSASLPVALAPVGYRVAPEARLRRLTAAYSGSSTSADLILGAAVVSAESG  176

Query  180  VPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQAR----ELLEKLRINGVVSEDVVLQ  235
            VP R+ +FA R R +    VGL  E+SV++ WA   R    E+L  +    +   +  + 
Sbjct  177  VPFRIASFAPRSRVISAAGVGLDVESSVIDEWANVIRRDTDEILCSIDHLHIKPGETDVA  236

Query  236  VVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP  291
            + TG  WA AL A +W+D E + LG+S  G + RV LGS + +I+++SPVP++V+P
Sbjct  237  IGTGPDWASALTAVEWEDPEAMMLGSSGLGAIKRVSLGSHAMRILQHSPVPIVVVP  292


 Score = 40.4 bits (93),  Expect = 0.31, Method: Compositional matrix adjust.
 Identities = 25/57 (44%), Positives = 33/57 (58%), Gaps = 1/57 (1%)

Query  93   AGLLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPRRYRC-YT  148
            A  L  VE  + E ++LGS   G   RV +GS A R+L  SPVP+ + PRR +  YT
Sbjct  244  ASALTAVEWEDPEAMMLGSSGLGAIKRVSLGSHAMRILQHSPVPIVVVPRRAKSGYT  300


>gi|111020001|ref|YP_702973.1| hypothetical protein RHA1_ro03012 [Rhodococcus jostii RHA1]
 gi|110819531|gb|ABG94815.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=296

 Score =  146 bits (369),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 93/295 (32%), Positives = 164/295 (56%), Gaps = 9/295 (3%)

Query  1    VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60
            +TI+ G+ + + G + L+LAV+++R     +  A IV R WP    A+ D     +   +
Sbjct  1    MTIIAGFSSSRQGTAPLNLAVQISRWTGDKVVAAAIVERPWP----AKDDPIEREYLGYV  56

Query  61   AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV  120
               ++    R + +L  G+++        S+  GL+++V + +A ++V+GS  SG   RV
Sbjct  57   TEQASHALDRVVGQLPGGMDIPRLVYQSDSIPTGLIELVADHDARLVVVGSSSSGLLGRV  116

Query  121  LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV  180
             +GS  +RL+H++ VPVAI PR Y    + + R++  Y   +    +V     LA ++ V
Sbjct  117  TLGSVTERLVHTAAVPVAIAPRGYPPVPESIRRITVAYGGEADVNGLVAATAELARQWPV  176

Query  181  PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVV---  237
             +R+++F VR  TM+   +    E  V++ WA + R  + K ++N V +   V  V    
Sbjct  177  QLRIVSFTVRPMTMFGGAIERSTEDLVVQQWARRTRADIIK-QLNAVRARIPVPDVDVVV  235

Query  238  -TGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP  291
             +G+ W +A++A  W+ G++LALG+   G  A VFLGS + KI+R++PVPVL++P
Sbjct  236  GSGHDWREAVEAVSWEAGDMLALGSGAAGPAAHVFLGSAASKILRHAPVPVLIVP  290


 Score = 37.0 bits (84),  Expect = 3.3, Method: Compositional matrix adjust.
 Identities = 18/39 (47%), Positives = 25/39 (65%), Gaps = 0/39 (0%)

Query  105  EVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPRR  143
            ++L LGS  +G  A V +GS A ++L  +PVPV I PR 
Sbjct  254  DMLALGSGAAGPAAHVFLGSAASKILRHAPVPVLIVPRN  292


>gi|332670276|ref|YP_004453284.1| UspA domain-containing protein [Cellulomonas fimi ATCC 484]
 gi|332339314|gb|AEE45897.1| UspA domain-containing protein [Cellulomonas fimi ATCC 484]
Length=296

 Score =  144 bits (364),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 91/222 (41%), Positives = 121/222 (55%), Gaps = 12/222 (5%)

Query  78   GIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPV  137
            G++V +     RSV   L DV E  +A  LVLGS  +G    V++GSTAD LLH+S VPV
Sbjct  72   GMQVEFVTVRARSVPRALADVAERQDATALVLGSSTAGAHGHVVVGSTADVLLHTSRVPV  131

Query  138  AITPRRYRCYTDR--------LTRLSCGYSATSGSVDVVRRCGHLASRYGVPMRVITFAV  189
            A+ PR Y+  +          + RL+  +  T    + VR    L     V +RV +F V
Sbjct  132  AVAPRGYQAVSVAGAGPLDVPVHRLTVAFGGTPSGREPVRWAQALTREIDVRLRVASFGV  191

Query  190  RGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGNGWAQALDAA  249
            R   MYPPEVGL  EA V E W    RE +   + +  +  DV L    G  WA A+D  
Sbjct  192  RAMPMYPPEVGLDIEAEVSEQW----REQVSAAQRDLDLGPDVELVTSVGTSWADAMDRI  247

Query  250  DWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP  291
             W+ GE+L  G+S  G +  VFLGS + KI+R+SPVPVLV+P
Sbjct  248  PWEPGEVLIAGSSSVGGLRAVFLGSRAAKIVRHSPVPVLVVP  289


>gi|213966452|ref|ZP_03394627.1| putative universal stress protein [Corynebacterium amycolatum 
SK46]
 gi|213950901|gb|EEB62308.1| putative universal stress protein [Corynebacterium amycolatum 
SK46]
Length=310

 Score =  143 bits (360),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 96/305 (32%), Positives = 159/305 (53%), Gaps = 19/305 (6%)

Query  3    IVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELW----SE  58
            I++ +  G+ G   L  A  +AR  K  + V + + R WP  SLAR+    + W    +E
Sbjct  8    IMIAWRPGEYGTETLAYAAWLARTTKVQIRVVSALSRGWPLTSLARLSTN-DSWVSHETE  66

Query  59   QLAAASAREAQRY-LRR-LADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGS-----  111
             L      E +   LR+ + D   V     +  S +  + +  EE EA+V++LG+     
Sbjct  67   SLEKIIKDELKLAGLRKGMLDDDAVRIIESSSESTT--ICNEAEEFEADVVLLGTRRSNT  124

Query  112  --FPSGRRARVLIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVR  169
              + +  R+R   GST+D LLH SP+P+ +     +     +TR+S  Y  T  S   + 
Sbjct  125  KDWAAKNRSRFTAGSTSDALLHYSPIPLGLAIPGAKLSKHGVTRVSICYIDTPQSHHALN  184

Query  170  RCGHLASRYGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEK--LRINGV  227
            +   LA R+ VP+R+++F  RG TMYP E G    + ++  W  QA  LL++   R +  
Sbjct  185  KAADLAYRWEVPLRLVSFTPRGATMYPTENGYGPSSDLMIEWREQAMGLLDRGIDRAHTR  244

Query  228  VSE-DVVLQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVP  286
              +  +  +V +GNGW +A+ +  W+ G++L LG+S  G   R+F+GS +  I+R+SPVP
Sbjct  245  YPDLSIDAEVASGNGWEEAIQSIKWKKGDLLVLGSSTLGPFGRIFIGSSTNHIVRHSPVP  304

Query  287  VLVLP  291
            +L+ P
Sbjct  305  MLITP  309


>gi|271964301|ref|YP_003338497.1| hypothetical protein Sros_2796 [Streptosporangium roseum DSM 
43021]
 gi|270507476|gb|ACZ85754.1| hypothetical protein Sros_2796 [Streptosporangium roseum DSM 
43021]
Length=302

 Score =  143 bits (360),  Expect = 4e-32, Method: Compositional matrix adjust.
 Identities = 100/293 (35%), Positives = 153/293 (53%), Gaps = 16/293 (5%)

Query  3    IVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQLAA  62
            ++ G++    G   L LA+ +AR     LTVA +    W TP   ++DAE++ +  + A 
Sbjct  6    VLAGFIPESRGKDGLWLALLLARQTGARLTVAHVHAPAWTTPGPGKIDAEWQAYVAEEAT  65

Query  63   ASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARVLI  122
             +  +A+R L  + D + + Y    HR    GL+ +V   +A+V+V+GS P G R R+ +
Sbjct  66   QTLDQARRLLADV-DDVPIDYVLHGHRGSGRGLVQLVGRSKADVVVIGSAPGGSRGRIRL  124

Query  123  GSTADRLLHSSPVPVAITPRRY-RCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGVP  181
            GSTAD+LLH+SPVPVA+ PR Y   +  R+ RL+  Y     S + VR+    A +  VP
Sbjct  125  GSTADQLLHASPVPVALAPRGYGEEHPPRIQRLTVAYRRAPASGEAVRQAAATALQMDVP  184

Query  182  MRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLE---KLRINGVVSEDVVLQVVT  238
            +R+IT  + G            +A + E    + RE +    K    G    +V + V+ 
Sbjct  185  LRLITLVLSG----------GRQARIEEEMLNRLRERVAADLKAAARGHRRVEVEVAVLE  234

Query  239  GNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP  291
            G   A AL   D + G +L   +S  G + RVFLG  S KIIR +P PV++LP
Sbjct  235  GRNVAAALGGTDCE-GSMLICASSETGPLRRVFLGDISSKIIRAAPCPVMMLP  286


>gi|226307542|ref|YP_002767502.1| hypothetical protein RER_40550 [Rhodococcus erythropolis PR4]
 gi|226186659|dbj|BAH34763.1| hypothetical protein RER_40550 [Rhodococcus erythropolis PR4]
Length=306

 Score =  142 bits (357),  Expect = 9e-32, Method: Compositional matrix adjust.
 Identities = 99/289 (35%), Positives = 154/289 (54%), Gaps = 11/289 (3%)

Query  1    VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60
            +T++ GY         +HLA  +AR     L +  ++    P P +ARVDAEY    +QL
Sbjct  1    MTLLAGYAPDGDSSGTVHLATLLARSSGEPLVICAVIPSP-PPPGMARVDAEYH---QQL  56

Query  61   AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV  120
             A +     +    +   ++V+Y     +S S+GLLD+V E EA+++VL S  +G    V
Sbjct  57   RAEAEAALAKARADMPSDVDVTYVVHEAQSTSSGLLDLVHEHEAKMIVLDSSTAGVFGHV  116

Query  121  LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTR-LSCGYSATSGSVDVVRRCGHLASRYG  179
             +GS   RLLHSS VPVA+ PR +R     + R ++  YS T    D+V     +A+R  
Sbjct  117  ALGSVTSRLLHSSDVPVALAPRGFRTKPGEVVRRVTAAYSGTPDQDDLVLAAATVAARVD  176

Query  180  VPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAA----QARELLEKLRINGVVSEDVVLQ  235
              +R+  FAVR    Y   +G   ++ V+  WA     +     E++R    +  DV+  
Sbjct  177  AGLRLAAFAVRANAQYTTTLGTEGDSPVISEWAEVVERETNAAFERVRALPEIP-DVMES  235

Query  236  VVT-GNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYS  283
            V++ G  WA+AL+  +W  G++L +G+S  G +ARVFLGS + KI+RYS
Sbjct  236  VISHGRNWAEALEGVEWDRGDVLTVGSSKAGPLARVFLGSRAAKIVRYS  284


>gi|229489291|ref|ZP_04383155.1| universal stress protein [Rhodococcus erythropolis SK121]
 gi|229323784|gb|EEN89541.1| universal stress protein [Rhodococcus erythropolis SK121]
Length=306

 Score =  141 bits (356),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 98/289 (34%), Positives = 154/289 (54%), Gaps = 11/289 (3%)

Query  1    VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60
            +T++ GY         +HLA  +AR     L +  ++    P P +ARVDAEY    +QL
Sbjct  1    MTLLAGYAPDGDSSGTVHLATLLARSSGEPLVICAVIPSP-PPPGMARVDAEYH---QQL  56

Query  61   AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV  120
             A +     +    +   ++V+Y     +S S+GLLD+V E EA+++VL S  +G    V
Sbjct  57   RAEAEAALAKARADMPSDVDVTYVVHEAQSTSSGLLDLVHEHEAKMIVLDSSTAGVFGHV  116

Query  121  LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTR-LSCGYSATSGSVDVVRRCGHLASRYG  179
             +GS   RLLHSS VPVA+ PR +R     + R ++  YS T    D+V     +A+R  
Sbjct  117  ALGSVTSRLLHSSDVPVALAPRGFRTKPGEVVRRVTAAYSGTPDQDDLVLAAATVAARVD  176

Query  180  VPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAA----QARELLEKLRINGVVSEDVVLQ  235
              +R+  FAVR    Y   +G   ++ ++  WA     +     E++R    +  DV+  
Sbjct  177  AGLRLAAFAVRANAQYTTTLGTEGDSPIISEWAEVVERETNAAFERVRALPEIP-DVMES  235

Query  236  VVT-GNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYS  283
            V++ G  WA+AL+  +W  G++L +G+S  G +ARVFLGS + KI+RYS
Sbjct  236  VISHGRNWAEALEGVEWDRGDVLTVGSSKAGPLARVFLGSRAAKIVRYS  284


>gi|237786624|ref|YP_002907329.1| universal stress protein [Corynebacterium kroppenstedtii DSM 
44385]
 gi|237759536|gb|ACR18786.1| universal stress protein [Corynebacterium kroppenstedtii DSM 
44385]
Length=305

 Score =  137 bits (344),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 83/284 (30%), Positives = 137/284 (49%), Gaps = 7/284 (2%)

Query  15   SALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQLAAASAR---EAQRY  71
            SA   A   AR     +   T++   WP+ +   +  +Y+ W  +      R   EA + 
Sbjct  21   SAEEFAAWFARTSPAVIRTITVLPSIWPSGAPDELGEDYQRWIRKETKKCERAALEALKE  80

Query  72   LRRLADGIEVS-YHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLL  130
             R   D ++ + +      S +  L        A +++LGS  S    R + GSTAD LL
Sbjct  81   ARVPDDSLDATPFEFVTAASETDALSAAATGFNATIVLLGSHASAAEGRFVAGSTADALL  140

Query  131  HSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGVPMRVITFAVR  190
            H +PV + + PR  R     +TR++C Y+ T  S + +R+    A R+ VP+R++ F   
Sbjct  141  HCAPVSLGLAPRGLRTSKKGVTRVNCAYADTEQSQEALRKACDYAHRWDVPLRLVAFTPH  200

Query  191  GRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSED---VVLQVVTGNGWAQALD  247
            G +MYP E        V   W  QA+ +LE+ +   +   D   V L + +G  W  ++ 
Sbjct  201  GPSMYPTETPYKHAKEVTRQWRDQAQSILERGQERALARFDDLRVDLAIGSGEDWENSIA  260

Query  248  AADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP  291
              DW+ G++L +G+S  G     FLGS + +I+R SPVP +++P
Sbjct  261  DLDWKKGDLLVVGSSTLGVFGHTFLGSSTNQIVRNSPVPTVIVP  304


>gi|108800336|ref|YP_640533.1| hypothetical protein Mmcs_3370 [Mycobacterium sp. MCS]
 gi|119869464|ref|YP_939416.1| UspA domain-containing protein [Mycobacterium sp. KMS]
 gi|126435959|ref|YP_001071650.1| UspA domain-containing protein [Mycobacterium sp. JLS]
 gi|108770755|gb|ABG09477.1| UspA [Mycobacterium sp. MCS]
 gi|119695553|gb|ABL92626.1| UspA domain protein [Mycobacterium sp. KMS]
 gi|126235759|gb|ABN99159.1| UspA domain protein [Mycobacterium sp. JLS]
Length=292

 Score =  136 bits (342),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 97/295 (33%), Positives = 158/295 (54%), Gaps = 9/295 (3%)

Query  1    VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60
            +TIV G+ A + G + LHLA  +AR     +  A IV R WP     R D   E +   +
Sbjct  1    MTIVAGFSASRQGSAPLHLAAEIARCTFDRIIAAAIVERPWPP----RGDPVEEEYLRYV  56

Query  61   AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV  120
             AA+    +R +  ++   +VS       SV  GL ++     A+V+V+GS  SG   RV
Sbjct  57   TAAARTSLERVVAEMSGDADVSVVVHKAASVPEGLTELAAHHHADVVVVGSSSSGLLGRV  116

Query  121  LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV  180
             +GS  DRL+H++ VPVAI PR Y    + + RL+  Y   + +V ++     LA R+  
Sbjct  117  ALGSVTDRLVHTAAVPVAIAPRSYPPSREPIRRLTVAYGGHADAVRLIETATELAVRWSA  176

Query  181  PMRVITFAVRGRTMYPPEVGLHAEASVLEAW----AAQARELLEKLRINGVVSEDVVLQV  236
             +R+ +F+VR   ++   +   AE+ V+E W    A +  + L ++R + + + D  + V
Sbjct  177  RLRIASFSVRPVAVFSGSIEPSAESLVVEQWSRRTADEITKQLNEIRAH-IAAPDAEVVV  235

Query  237  VTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP  291
               + W  A++   W+ G++L LG+   G  A VFLGS + KI+R+SPVPV+++P
Sbjct  236  GVSHDWRTAVEDVAWEPGDLLLLGSGAAGPAAHVFLGSAAAKILRHSPVPVMIVP  290


 Score = 40.0 bits (92),  Expect = 0.45, Method: Compositional matrix adjust.
 Identities = 20/39 (52%), Positives = 27/39 (70%), Gaps = 0/39 (0%)

Query  105  EVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPRR  143
            ++L+LGS  +G  A V +GS A ++L  SPVPV I PRR
Sbjct  254  DLLLLGSGAAGPAAHVFLGSAAAKILRHSPVPVMIVPRR  292


>gi|337291876|ref|YP_004630897.1| hypothetical protein CULC22_02276 [Corynebacterium ulcerans BR-AD22]
 gi|334700182|gb|AEG84978.1| hypothetical protein CULC22_02276 [Corynebacterium ulcerans BR-AD22]
Length=325

 Score =  134 bits (337),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 89/305 (30%), Positives = 148/305 (49%), Gaps = 21/305 (6%)

Query  1    VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60
            V ++V +     G +AL  A  ++R     +   T   R WP+ +  ++  +Y+ W ++ 
Sbjct  21   VRVLVAWTPNSTGSAALDCAAWLSRTTNVEVRCVTTFLRPWPSRTGKKIGTKYKKWFKKE  80

Query  61   AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEE----------LEAEVLVLG  110
            AAA     +R L R     E     R + +VS    D   E            A++++LG
Sbjct  81   AAACEEAVKRDLTRADIAKE-----RWNSTVSV-FCDGTNEAALLSDAAADFRADIVILG  134

Query  111  SFPSGRRARVLIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRR  170
            S  +  + R L GSTAD LLHSSP P+A+TPR+       +TR++  Y+        + R
Sbjct  135  SDAAAPKGRFLAGSTADALLHSSPKPLALTPRKPNLSKRGVTRVNFAYTGDDTDSQALIR  194

Query  171  CGHLASRYGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSE  230
               LA+ + VP+RV+  +  G  + P    +     +   W      +L++ R + V  E
Sbjct  195  AATLAAAWNVPLRVLALSPSGFGVPPISDSVELPRDIALEWRENTLAVLDRAR-DTVHKE  253

Query  231  ----DVVLQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVP  286
                +V   + +G GW  A+DA  W+ G++L  G++P G   RVF+GS + +I+ Y  VP
Sbjct  254  QPEVNVETHIGSGAGWQGAIDAVKWKKGDLLCFGSTPLGAFERVFIGSQATEILPYVSVP  313

Query  287  VLVLP  291
            VL++P
Sbjct  314  VLMIP  318


>gi|300859458|ref|YP_003784441.1| hypothetical protein cpfrc_02041 [Corynebacterium pseudotuberculosis 
FRC41]
 gi|300686912|gb|ADK29834.1| hypothetical protein cpfrc_02041 [Corynebacterium pseudotuberculosis 
FRC41]
 gi|302207138|gb|ADL11480.1| Universal stress protein UspA [Corynebacterium pseudotuberculosis 
C231]
 gi|302331699|gb|ADL21893.1| Universal stress protein UspA [Corynebacterium pseudotuberculosis 
1002]
 gi|308277392|gb|ADO27291.1| Universal stress protein UspA-like nucleotide-binding protein 
[Corynebacterium pseudotuberculosis I19]
 gi|341825830|gb|AEK93351.1| Universal stress protein UspA [Corynebacterium pseudotuberculosis 
PAT10]
Length=325

 Score =  133 bits (334),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 89/303 (30%), Positives = 151/303 (50%), Gaps = 17/303 (5%)

Query  1    VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60
            V ++V +     G +AL  A   +R     +   T   R WP+ +  ++  +Y+ W ++ 
Sbjct  21   VRVLVAWTPNSTGSAALDCAAWFSRTTNVEVRCVTTFLRPWPSRTGNKLGTKYKKWFKKE  80

Query  61   AAASAREAQRYLRRLADGIEVSYHH--------RAHRSVSAGLLDVVEELEAEVLVLGSF  112
            AAA     +R L R     +++  H        R   + +A L DV  +  A++++LGS 
Sbjct  81   AAACEEAVKRDLIR----ADIAQEHWSSTVSVFRDGTNEAALLSDVAADFRADIVILGSD  136

Query  113  PSGRRARVLIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCG  172
             +  + R L GSTAD LLHSSP P+A+TPR+       +TR++  Y+        + R  
Sbjct  137  AAAPKGRFLAGSTADALLHSSPNPLALTPRKPSLSKRGVTRVNFAYTGDDTDNQALVRAA  196

Query  173  HLASRYGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSE--  230
             LA+ + VP+RV+  +  G  + P    +     +   W      +L++ R + V  E  
Sbjct  197  VLAAAWNVPLRVLALSPSGFGIPPIPDSVELPRDIALEWRENTLAVLDRAR-DTVHKEQP  255

Query  231  --DVVLQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVL  288
              +V   + +G GW  A+DA  W+ G++L  G++P G   RVF+GS + +I+ Y  VPVL
Sbjct  256  EVNVETHIGSGAGWQGAIDAVKWKKGDLLCFGSTPLGAFERVFIGSQATEILPYVSVPVL  315

Query  289  VLP  291
            ++P
Sbjct  316  MIP  318


>gi|145296979|ref|YP_001139800.1| hypothetical protein cgR_2878 [Corynebacterium glutamicum R]
 gi|140846899|dbj|BAF55898.1| hypothetical protein [Corynebacterium glutamicum R]
 gi|344045416|gb|EGV41087.1| hypothetical protein CgS9114_03750 [Corynebacterium glutamicum 
S9114]
Length=313

 Score =  132 bits (333),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 84/288 (30%), Positives = 146/288 (51%), Gaps = 16/288 (5%)

Query  17   LHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQLAA-------ASAREAQ  69
               A  +AR    ++   T   R WP+ S++++  +Y  W + L +          +EA 
Sbjct  29   FEFAAWLARTSDINVRGITTFIRPWPSSSISKLGGKYHKWYKNLDSYYRSRTIKGLKEAG  88

Query  70   RYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRL  129
                +  D + V     +  ++   L    EE EA++++LGS  +  + R L  STAD L
Sbjct  89   LEKSQWDDDVSVFVDGPSESTL---LTHAAEEFEADLILLGSDATAPKGRFLASSTADAL  145

Query  130  LHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDV-VRRCGHLASRYGVPMRVITFA  188
            LHSSPVP+ + PR  +     +TR++  ++  S   +  +R    LA+ + VP+R++ F+
Sbjct  146  LHSSPVPLGLVPRGVKLSKKGVTRVNYAFTNESDDFEQGLRSSAELATNWNVPLRILAFS  205

Query  189  VRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVT----GNGWAQ  244
              G T  P    L     +   W      +L++ R +GV+++   L V +    G GW+ 
Sbjct  206  PSGITSAPTSRSLDISTELSSEWRELTLAMLDRAR-DGVLTDHPNLSVSSETGSGWGWSG  264

Query  245  ALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG  292
            A+DA  W+ G++L +G+     ++RVF+GS + +IIR SPVP ++ PG
Sbjct  265  AIDALRWKKGDLLCMGSHRTDTLSRVFVGSETMEIIRNSPVPTIIYPG  312


>gi|19554183|ref|NP_602185.1| hypothetical protein NCgl2887 [Corynebacterium glutamicum ATCC 
13032]
 gi|21325762|dbj|BAC00383.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032]
Length=314

 Score =  132 bits (333),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 84/288 (30%), Positives = 146/288 (51%), Gaps = 16/288 (5%)

Query  17   LHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQLAA-------ASAREAQ  69
               A  +AR    ++   T   R WP+ S++++  +Y  W + L +          +EA 
Sbjct  30   FEFAAWLARTSDINVRGITTFIRPWPSSSISKLGGKYHKWYKNLDSYYRSRTIKGLKEAG  89

Query  70   RYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRL  129
                +  D + V     +  ++   L    EE EA++++LGS  +  + R L  STAD L
Sbjct  90   VEKSQWDDDVSVFVDGPSESTL---LTHAAEEFEADLILLGSDATAPKGRFLASSTADAL  146

Query  130  LHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDV-VRRCGHLASRYGVPMRVITFA  188
            LHSSPVP+ + PR  +     +TR++  ++  S   +  +R    LA+ + VP+R++ F+
Sbjct  147  LHSSPVPLGLVPRGVKLSKKGVTRVNYAFTNESDDFEQGLRSSAELATNWNVPLRILAFS  206

Query  189  VRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVT----GNGWAQ  244
              G T  P    L     +   W      +L++ R +GV+++   L V +    G GW+ 
Sbjct  207  PTGITSAPTSRSLDISTELSSEWRELTLAMLDRAR-DGVLTDHPNLSVSSETGSGWGWSG  265

Query  245  ALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG  292
            A+DA  W+ G++L +G+     ++RVF+GS + +IIR SPVP ++ PG
Sbjct  266  AIDALRWKKGDLLCMGSHRTDTLSRVFVGSETMEIIRNSPVPTIIYPG  313


>gi|62391837|ref|YP_227239.1| hypothetical protein cg3316 [Corynebacterium glutamicum ATCC 
13032]
 gi|41222984|emb|CAF18929.1| Universal stress protein UspA or related nucleotide-binding protein 
[Corynebacterium glutamicum ATCC 13032]
Length=313

 Score =  132 bits (333),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 84/288 (30%), Positives = 146/288 (51%), Gaps = 16/288 (5%)

Query  17   LHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQLAA-------ASAREAQ  69
               A  +AR    ++   T   R WP+ S++++  +Y  W + L +          +EA 
Sbjct  29   FEFAAWLARTSDINVRGITTFIRPWPSSSISKLGGKYHKWYKNLDSYYRSRTIKGLKEAG  88

Query  70   RYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRL  129
                +  D + V     +  ++   L    EE EA++++LGS  +  + R L  STAD L
Sbjct  89   VEKSQWDDDVSVFVDGPSESTL---LTHAAEEFEADLILLGSDATAPKGRFLASSTADAL  145

Query  130  LHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDV-VRRCGHLASRYGVPMRVITFA  188
            LHSSPVP+ + PR  +     +TR++  ++  S   +  +R    LA+ + VP+R++ F+
Sbjct  146  LHSSPVPLGLVPRGVKLSKKGVTRVNYAFTNESDDFEQGLRSSAELATNWNVPLRILAFS  205

Query  189  VRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVT----GNGWAQ  244
              G T  P    L     +   W      +L++ R +GV+++   L V +    G GW+ 
Sbjct  206  PTGITSAPTSRSLDISTELSSEWRELTLAMLDRAR-DGVLTDHPNLSVSSETGSGWGWSG  264

Query  245  ALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG  292
            A+DA  W+ G++L +G+     ++RVF+GS + +IIR SPVP ++ PG
Sbjct  265  AIDALRWKKGDLLCMGSHRTDTLSRVFVGSETMEIIRNSPVPTIIYPG  312


>gi|334697847|gb|AEG82644.1| hypothetical protein CULC809_02120 [Corynebacterium ulcerans 
809]
Length=325

 Score =  132 bits (332),  Expect = 6e-29, Method: Compositional matrix adjust.
 Identities = 87/305 (29%), Positives = 149/305 (49%), Gaps = 21/305 (6%)

Query  1    VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60
            V ++V +     G +AL  A  ++R     +   T   R WP+ +  ++  +Y+ W ++ 
Sbjct  21   VRVLVAWTPNSTGSAALDCAAWLSRTTNVEVRCVTTFLRPWPSRTGKKIGTKYKKWFKKE  80

Query  61   AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEE----------LEAEVLVLG  110
            AAA     ++ L R AD  +  ++     S  +   D   E            A++++LG
Sbjct  81   AAACEEAVKQDLTR-ADIAKEFWN-----STVSVFCDGTNEAALLSDAAADFRADIVILG  134

Query  111  SFPSGRRARVLIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRR  170
            S  +  + R L GSTAD LLHSSP P+A+TPR+       +TR++  Y+        + R
Sbjct  135  SDAAAPKGRFLAGSTADALLHSSPKPLALTPRKPNLSKRGVTRVNFAYTGDDTDSQALIR  194

Query  171  CGHLASRYGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSE  230
               LA+ + VP+RV+  +  G  + P    +     +   W      +L++ R + V  E
Sbjct  195  AATLAAAWNVPLRVLALSPSGFGVLPISDSVELPRDIALEWRENTLAVLDRAR-DTVHKE  253

Query  231  ----DVVLQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVP  286
                +V   + +G GW  A+DA  W+ G++L  G++P G   RVF+GS + +I+ Y  VP
Sbjct  254  QPEVNVETHIGSGAGWQGAIDAVKWKKGDLLCFGSTPLGAFERVFIGSQATEILPYVSVP  313

Query  287  VLVLP  291
            VL++P
Sbjct  314  VLMIP  318


>gi|226366463|ref|YP_002784246.1| Usp family protein [Rhodococcus opacus B4]
 gi|226244953|dbj|BAH55301.1| putative Usp family protein [Rhodococcus opacus B4]
Length=296

 Score =  130 bits (327),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 92/299 (31%), Positives = 155/299 (52%), Gaps = 17/299 (5%)

Query  1    VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60
            +TI+ G+ A + G + LHLA R+AR    ++  A IV + WP      +D EY  +    
Sbjct  1    MTIIAGFSASRQGTAPLHLAARIARWTGETVVAAAIVEQPWPGKD-EPIDREYLRYVTA-  58

Query  61   AAASAREAQRYLRRLADGI--EVSYHHRAHRSVS--AGLLDVVEELEAEVLVLGSFPSGR  116
                  EA R L  +  G+          HRS S   GL+++    +A ++V+GS  SG 
Sbjct  59   ------EASRALDGVVGGLPGNPDIPTVVHRSTSIPTGLIELAAAHDATLVVVGSSSSGL  112

Query  117  RARVLIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLAS  176
              RV +GS  +RL+H++ VPVAI PR Y      + RL+  Y   +    ++     +A+
Sbjct  113  LGRVALGSVTERLVHTAAVPVAIAPRGYPPLPGPIRRLTAAYGGEADVNGLIAATAAMAA  172

Query  177  RYGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARE----LLEKLRINGVVSEDV  232
            R+ V +R+++F VR  + +   +    E  V+  W  +  +     L+ +R   +   DV
Sbjct  173  RWPVTLRIVSFTVRPVSRFGGAIEQSTEDLVVRQWTRRTTDDIARQLDAVRAR-IPVPDV  231

Query  233  VLQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP  291
             +++ +G  W  A++A  W+  ++L LG+   G  A VFLGS + KI+R++PVPV+++P
Sbjct  232  DVEIGSGTDWRGAVEAVSWEPDDMLVLGSGAAGPAAHVFLGSAASKILRHAPVPVMIVP  290


 Score = 38.9 bits (89),  Expect = 0.97, Method: Compositional matrix adjust.
 Identities = 21/49 (43%), Positives = 30/49 (62%), Gaps = 0/49 (0%)

Query  94   GLLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPR  142
            G ++ V     ++LVLGS  +G  A V +GS A ++L  +PVPV I PR
Sbjct  243  GAVEAVSWEPDDMLVLGSGAAGPAAHVFLGSAASKILRHAPVPVMIVPR  291


>gi|172041671|ref|YP_001801385.1| putative universal stress protein [Corynebacterium urealyticum 
DSM 7109]
 gi|171852975|emb|CAQ05951.1| putative universal stress protein [Corynebacterium urealyticum 
DSM 7109]
Length=408

 Score =  129 bits (325),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 80/230 (35%), Positives = 118/230 (52%), Gaps = 28/230 (12%)

Query  82   SYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITP  141
            S H    R + AG     EE  A+V++LGS       R  +GSTAD LLH SP+P+ + P
Sbjct  182  SDHSETSRLIEAG-----EEFGADVILLGSQADSPDGRYRMGSTADALLHCSPLPLMLVP  236

Query  142  RRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGVPMRVITFAVRGRTMYPPEVGL  201
            R         TRL+C Y  T  S   +R    LA R+ VP+R++ F+  G ++ P +V  
Sbjct  237  RNLDFSKAGPTRLNCAYVDTEQSQQALRHASDLARRWEVPLRLVAFSPAGVSLDPTQVAF  296

Query  202  ------------------HAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGNG--  241
                              +A A + EAW  QA+ELLE+ R    +S    L+V T  G  
Sbjct  297  GDAVDAAGAGSAGAVGSNNAAAPLAEAWQVQAKELLERGRKRA-LSRHPELEVTTKTGIG  355

Query  242  --WAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLV  289
              W +A+ A  W+ G+++ +G+S  GD  RVF+G  + +I+R+ PVPV +
Sbjct  356  ASWEEAVGAIKWRKGDLMVMGSSVLGDFNRVFIGPSTNQILRHVPVPVFL  405


>gi|38234832|ref|NP_940599.1| hypothetical protein DIP2297 [Corynebacterium diphtheriae NCTC 
13129]
 gi|38201096|emb|CAE50820.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
Length=321

 Score =  129 bits (324),  Expect = 5e-28, Method: Compositional matrix adjust.
 Identities = 84/301 (28%), Positives = 150/301 (50%), Gaps = 13/301 (4%)

Query  1    VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60
            V ++V +     G  A+  A  +AR    ++   T   R WP+ S  ++ ++Y+ W ++ 
Sbjct  13   VRVLVAWNPSSHGAEAIECAAWLARTTNVTVQCVTAFLRPWPSSSGNKLGSKYKKWFKKE  72

Query  61   AAASAREAQRYLRR-------LADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFP  113
            A A     +    R        AD + V          +A L +   +  A++++LGS  
Sbjct  73   AFACEDAVKAAFSRAEIPTAMWADTVSVFCDGTNE---AALLSEAAHKFGADIVLLGSEA  129

Query  114  SGRRARVLIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGH  173
            +  + R L GSTAD LLHSSP P+ +TPR+ +     +TR++  Y+  +     + R   
Sbjct  130  AAPKGRFLAGSTADALLHSSPQPLGLTPRKPKLSKRGVTRVNFAYTGDATDNTSLIRTAR  189

Query  174  LASRYGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRIN-GVVSEDV  232
            LA+ + VP+RV+  +  G  + P    L     +   W      +L++ R        DV
Sbjct  190  LAAAWDVPLRVLALSPEGFGVPPISDTLELPEDLALEWRENTFAVLDRSRDTVHKAHPDV  249

Query  233  VL--QVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVL  290
            ++  ++ +GNGW+ A+++  W+ G++L  G++P G   RVF+GS + +I+ Y  VPVL++
Sbjct  250  IVETEIGSGNGWSGAIESLKWKKGDLLCFGSTPLGAFERVFIGSQATEILPYVSVPVLMI  309

Query  291  P  291
            P
Sbjct  310  P  310


>gi|340795956|ref|YP_004761419.1| hypothetical protein CVAR_3004 [Corynebacterium variabile DSM 
44702]
 gi|340535866|gb|AEK38346.1| hypothetical protein CVAR_3004 [Corynebacterium variabile DSM 
44702]
Length=322

 Score =  129 bits (323),  Expect = 6e-28, Method: Compositional matrix adjust.
 Identities = 90/287 (32%), Positives = 137/287 (48%), Gaps = 21/287 (7%)

Query  23   VARMHKTSLTVATIVRRHWPTPSLARVDAEYEL------WSEQLAAASAREAQRYLRRL-  75
            ++R    S+    ++ R WP  S     A+ ++      W+    AA   +A+  LR   
Sbjct  34   MSRSGPLSIRPVCVIPRIWPESSGGGGAADPDILDRVTDWAHAETAACLEDARTALRDAG  93

Query  76   ---------ADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARVLIGSTA  126
                     A G + +       S +  L+    +  AEV+++GS           G+TA
Sbjct  94   VPEGYIDTGASGSDGTDAPLVSHSETTALITAATDFGAEVILIGSRDDAPEGHFRAGATA  153

Query  127  DRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGVPMRVIT  186
            D LLH SP+PV + P      +  +TR+SC Y  T  S   +R    LA+R  VP+R++ 
Sbjct  154  DALLHCSPLPVLVAPHLPTLSSHGVTRVSCAYVDTEQSQQALRHAADLATRCSVPLRLVA  213

Query  187  FAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGNG----W  242
            F+  G TMYP  V L   A  LE W  QA  +L++ R N  +     L+V TG G    W
Sbjct  214  FSPVGATMYPTRVPLPDSADALERWRTQAEAILDRGR-NRALERHPGLEVQTGVGVGDDW  272

Query  243  AQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLV  289
            A A+    W+ G++L +G+S  G   RVF+G  + +I+R+SP PV V
Sbjct  273  AGAIGDLRWKKGDLLVVGSSVLGSFNRVFIGPSTNQILRHSPAPVFV  319


>gi|118467904|ref|YP_889712.1| universal stress protein family protein [Mycobacterium smegmatis 
str. MC2 155]
 gi|118169191|gb|ABK70087.1| universal stress protein family protein [Mycobacterium smegmatis 
str. MC2 155]
Length=298

 Score =  126 bits (317),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 89/298 (30%), Positives = 151/298 (51%), Gaps = 11/298 (3%)

Query  1    VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60
            +TI+  + A     + L+LA ++AR    ++  A ++ R WP P    V+ EY    + +
Sbjct  1    MTILAAFSASGHARAPLYLAAQIARTTGDNVLAAAVIERPWP-PRGDPVEKEY---LDYV  56

Query  61   AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV  120
               +A         L   IE S       SV  GL+++     A+++V+GS  SG   RV
Sbjct  57   GRQAAHALDSAAAVLPATIEFSTLVHESTSVPKGLMELAASHRAQIVVVGSSSSGLLGRV  116

Query  121  LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV  180
             +GS  +RL+H++ VPVAI PR Y   + ++ RL+  Y   +    ++     LA  +  
Sbjct  117  ALGSVTERLVHTAQVPVAIAPRGYAQGSGKIRRLTAAYGGEADVNGLIPAAAQLAKDWST  176

Query  181  PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARE----LLEKLRI---NGVVSEDVV  233
             +R+++F VR    +   +   AE  V++ W+ +  +    LL+ +R    N    +DV 
Sbjct  177  LLRIVSFTVRNVAAFSGRIESAAEDLVVQQWSRRTHDDIVRLLDSVRADVRNDGPLDDVD  236

Query  234  LQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP  291
            + V TG  W  A+ +  W+ G++L LG+      A+VFLGS + +I+R  PVPV+V+P
Sbjct  237  VVVGTGADWNTAVQSVPWEAGDMLLLGSGAAAQSAQVFLGSAAARILRNCPVPVMVVP  294


 Score = 38.5 bits (88),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 17/38 (45%), Positives = 27/38 (72%), Gaps = 0/38 (0%)

Query  105  EVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPR  142
            ++L+LGS  + + A+V +GS A R+L + PVPV + PR
Sbjct  258  DMLLLGSGAAAQSAQVFLGSAAARILRNCPVPVMVVPR  295


>gi|119961252|ref|YP_945874.1| universal stress family domain-containing protein [Arthrobacter 
aurescens TC1]
 gi|119948111|gb|ABM07022.1| putative universal stress family domain protein [Arthrobacter 
aurescens TC1]
Length=298

 Score =  126 bits (317),  Expect = 4e-27, Method: Compositional matrix adjust.
 Identities = 94/296 (32%), Positives = 147/296 (50%), Gaps = 17/296 (5%)

Query  4    VVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEY-ELWSEQLAA  62
            VVGY A   G  A+HLAV +AR H  SL +  ++    P  ++   +A Y ++ +EQ   
Sbjct  4    VVGYTANARGHDAVHLAVALARNHDVSLDLVLVIPEDSPFNAVYPPEAGYNDILNEQ---  60

Query  63   ASAREAQRYLRRLADGIEVSYHHRAH----RSVSAGLLDVVEELEAEVLVLGSFPSGRRA  118
                 AQR+L      +      RAH     S +  L+D   E++A  LV+G+   G   
Sbjct  61   -----AQRWLDEGLALVPADVTARAHIRRGDSEARTLIDAAVEMDAAALVIGATNDGLFK  115

Query  119  RVLIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRY  178
            R  IGS A  LLHSSPVPVA+ P  YR  T+ +TRLSCG+    G+ +++      A   
Sbjct  116  RFTIGSVASSLLHSSPVPVALAPHGYR-RTEPITRLSCGFGTRPGADELLDVAVESARDR  174

Query  179  GVPMRVITFAVRGRTMYPPEVG---LHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQ  235
            G+P+R+++         P  +    +HA   +    ++   +        G +  +  + 
Sbjct  175  GLPLRLVSLLALDGGNSPQLLDAAWMHAADRLAAVGSSVDADGSADATAAGSLQGEPEIV  234

Query  236  VVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP  291
            V  G    +A+D  DW+DGEIL +G+S        FLG+ + +I+R  PVP++V+P
Sbjct  235  VAQGRKIEEAVDRLDWEDGEILLIGSSRLAQQRATFLGTTANRILRALPVPMIVVP  290


 Score = 37.0 bits (84),  Expect = 3.9, Method: Compositional matrix adjust.
 Identities = 15/42 (36%), Positives = 28/42 (67%), Gaps = 0/42 (0%)

Query  103  EAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPRRY  144
            + E+L++GS    ++    +G+TA+R+L + PVP+ + PR Y
Sbjct  252  DGEILLIGSSRLAQQRATFLGTTANRILRALPVPMIVVPRDY  293


>gi|25029383|ref|NP_739437.1| hypothetical protein CE2827 [Corynebacterium efficiens YS-314]
 gi|259508436|ref|ZP_05751336.1| universal stress protein [Corynebacterium efficiens YS-314]
 gi|23494671|dbj|BAC19637.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259163990|gb|EEW48544.1| universal stress protein [Corynebacterium efficiens YS-314]
Length=314

 Score =  124 bits (312),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 83/294 (29%), Positives = 152/294 (52%), Gaps = 13/294 (4%)

Query  10   GKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQLAAASAREAQ  69
            G+   +    A  ++R     +   T   R WP+ S++++  +Y+ W + L +       
Sbjct  22   GEQNAAVFEFAAWLSRTTDIRVRGVTTFTRPWPSSSVSKLGGKYKKWFQNLESRYETRTI  81

Query  70   RYLRRLADGIEVSYHHRAHRSVSAG------LLDVVEELEAEVLVLGSFPSGRRARVLIG  123
            + L+R AD ++ S+      + + G      L    EE  A++++LGS  +  + R L G
Sbjct  82   KALKR-AD-VDKSHWDATVSTFADGPSESVLLTHAAEEFNADLILLGSDATAPKGRFLAG  139

Query  124  STADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDV--VRRCGHLASRYGVP  181
            STAD LLHSSPVP+ + PR  +     +TR++  +++ +G+     +     LAS +GVP
Sbjct  140  STADALLHSSPVPLGLVPRGVKLSKKGVTRVNYAFTSENGNAHDRGLMYAAELASDWGVP  199

Query  182  MRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLR--INGVVSEDVVL-QVVT  238
            +R+++F+  G         L   + +   W   +  +L+  R  +  + S  VV  ++ +
Sbjct  200  LRILSFSSAGIADGSASDSLDLPSLLSSKWREHSLAMLDSARDEVLSIHSSLVVTSEIGS  259

Query  239  GNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG  292
            G GW  A++A  W+ G++L LG+     ++RVF+G+ + +IIR SPVP ++ PG
Sbjct  260  GWGWNGAINALKWKKGDLLCLGSRRADTISRVFVGTETMEIIRNSPVPTIIYPG  313


>gi|296118488|ref|ZP_06837066.1| putative universal stress protein [Corynebacterium ammoniagenes 
DSM 20306]
 gi|295968387|gb|EFG81634.1| putative universal stress protein [Corynebacterium ammoniagenes 
DSM 20306]
Length=314

 Score =  121 bits (304),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 145/300 (49%), Gaps = 13/300 (4%)

Query  3    IVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQLAA  62
            I++ +     G   +  A  +AR     + V +   + W   S+ ++  +Y  W  Q A 
Sbjct  12   ILISWTPASGGTEPIEYAAWLARTTPVEVRVLSAFVQPWHEVSMQKLGGKYHKWFAQEAK  71

Query  63   ASAREAQRYLRRLADGIEVSYHHRAHRSVSAG------LLDVVEELEAEVLVLGSFPSGR  116
            A  +  +  L+  A GI     ++ +  +  G      L    EE +A++++LG      
Sbjct  72   ACKQAVKNTLQ--AAGIPREQWNKDYSVLMDGPSKPQLLTQAAEEFDADLVLLGPNQGAA  129

Query  117  RARVLIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDV--VRRCGHL  174
            + R L GSTAD LLH SP+PV ++PR  +     +TRL+   +   G  DV  +     L
Sbjct  130  KGRFLAGSTADSLLHYSPIPVGLSPRAAKLSKHGVTRLNFALTEEQGIDDVPALIDAAFL  189

Query  175  ASRYGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQA--RELLEKLRINGVVSE-D  231
            AS + VP+R+I F+  G    P    L     +   W   +  R  + + R+     + +
Sbjct  190  ASTWNVPLRIIVFSSHGLVNAPINDNLDVALELTSQWREHSLGRLDIARERVGERFPDLE  249

Query  232  VVLQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP  291
            +  ++ +G GW  A+D+  W+ G+++ LG+SP G + RVF+GS + +++ +  VP++V P
Sbjct  250  IRTEIGSGKGWRAAVDSLKWKKGDLICLGSSPMGALERVFIGSRATELLPHLSVPIIVWP  309


>gi|227834268|ref|YP_002835975.1| universal stress protein [Corynebacterium aurimucosum ATCC 700975]
 gi|262183001|ref|ZP_06042422.1| universal stress protein [Corynebacterium aurimucosum ATCC 700975]
 gi|227455284|gb|ACP34037.1| universal stress protein [Corynebacterium aurimucosum ATCC 700975]
Length=327

 Score =  120 bits (301),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 82/301 (28%), Positives = 149/301 (50%), Gaps = 17/301 (5%)

Query  3    IVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQLAA  62
            ++V +     G  A+  A  +AR     + V + + +     SL+++   Y+ W ++  A
Sbjct  24   VLVSWSPSSTGTEAIEFAAWLARSTSVRIRVVSTISQPLTVTSLSKLSGSYKKWFKKERA  83

Query  63   ASAREAQRYLRRLADGIEVSYHHRAHRSVSAG------LLDVVEELEAEVLVLGSFPSGR  116
               R  ++ L   A G++     +    + AG      L    E+ +A V++LG+  S  
Sbjct  84   TCERAVKQALH--AAGVDKDQLDKNVSVLLAGPSRPQLLEQAAEDFKASVILLGANQSAP  141

Query  117  RARVLIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVD-VVRRCGHLA  175
            + R   GSTAD LLH SP+PV + PR  +     +TR++  ++    + D  +     +A
Sbjct  142  KGRFFSGSTADALLHYSPLPVGLIPRGIKLSKHGVTRINFAFTDLGSADDPALLHAACIA  201

Query  176  SRYGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSE-----  230
             R G+P+R++ F+ +G    P E       S    W   +  LL+  R +  +++     
Sbjct  202  QRGGIPLRILAFSAKGLVDVPLEYS-PTFPSDAPNWREHSLSLLD--RAHDFIADAYPEL  258

Query  231  DVVLQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVL  290
             V   + +G+GW+ A+D+  W+ G++L LG+SP G + RVF+GS + +++ +  VPVLV 
Sbjct  259  SVTTAIGSGHGWSGAVDSLKWKKGDLLCLGSSPMGPIERVFIGSTATELLPHLGVPVLVC  318

Query  291  P  291
            P
Sbjct  319  P  319


 Score = 39.3 bits (90),  Expect = 0.69, Method: Compositional matrix adjust.
 Identities = 22/52 (43%), Positives = 30/52 (58%), Gaps = 0/52 (0%)

Query  93   AGLLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPRRY  144
            +G +D ++  + ++L LGS P G   RV IGSTA  LL    VPV + P  Y
Sbjct  271  SGAVDSLKWKKGDLLCLGSSPMGPIERVFIGSTATELLPHLGVPVLVCPSTY  322


>gi|227506307|ref|ZP_03936356.1| universal stress protein [Corynebacterium striatum ATCC 6940]
 gi|227197119|gb|EEI77167.1| universal stress protein [Corynebacterium striatum ATCC 6940]
Length=328

 Score =  119 bits (298),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 79/303 (27%), Positives = 147/303 (49%), Gaps = 16/303 (5%)

Query  1    VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL  60
            V ++V +     G  A+  A  +AR  K  + V + +     T    +   +Y+ W ++ 
Sbjct  22   VRLLVSWSPSSTGTEAIEYAAWLARSTKVCIRVISTISVPRATTVFTKHGGKYKKWFKKE  81

Query  61   AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAG------LLDVVEELEAEVLVLGSFPS  114
             A   +     L+  A G++ S        + AG      L ++  E  A+ ++LG+  S
Sbjct  82   QAECEQSVLAALK--AAGVDNSQLDERPSVLLAGPSRPQLLTEMATEFCADAILLGANQS  139

Query  115  GRRARVLIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVD-VVRRCGH  173
              + +   GSTAD LLH SP+P+ +TPR  +     +TR++  ++    S D  +     
Sbjct  140  APKGKFFAGSTADALLHFSPIPLGLTPRDIKLSKHGVTRINFAFTERGDSEDPALLHAAR  199

Query  174  LASRYGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSE---  230
            LA+R+ +P+R++ F   G    P    +   + + + W      +L+  R   +V     
Sbjct  200  LANRWKLPLRIVAFNAEGLIDAPLHDSVDIASKLTKGWHEHTLAMLD--RAQDIVDHHYP  257

Query  231  --DVVLQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVL  288
              ++   + TG+GWA A+D+  W+ G+I+ +G+SP G + RVF+GS + +++ +  VPV+
Sbjct  258  GLEISTDIGTGHGWAGAVDSLKWKKGDIMCMGSSPMGPIERVFIGSAATELLPHIRVPVM  317

Query  289  VLP  291
            V P
Sbjct  318  VRP  320


>gi|116671639|ref|YP_832572.1| UspA domain-containing protein [Arthrobacter sp. FB24]
 gi|116611748|gb|ABK04472.1| UspA domain protein [Arthrobacter sp. FB24]
Length=289

 Score =  117 bits (293),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 89/292 (31%), Positives = 147/292 (51%), Gaps = 22/292 (7%)

Query  4    VVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQLAAA  63
            VVGY   + G  A+ LA  +A+     L +  +V R         V + ++L  E+    
Sbjct  4    VVGYTPNERGADAVALASALAKAQGAQLDLVYVVDRGLHVAH--EVASGHDLAREKAVQD  61

Query  64   SAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARVLIG  123
            + RE    L  +   + V +H R   S +AGL++   ++EA ++V+G+  +G   R  +G
Sbjct  62   AQREG---LGLVPADVPVEFHVRHAESFAAGLIEAAVDIEAGLIVVGAASNGLFKRHTVG  118

Query  124  STADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGVPMR  183
            S A+ LLH+SPVPVA+ PR YR  T+ ++RL+       G+   +      A R GVP+R
Sbjct  119  SVANALLHASPVPVALAPRGYR-RTEAISRLTLAVGQRPGADAAIDVAIGSAERRGVPLR  177

Query  184  VITFAVRGRTMYPPEV----GLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTG  239
            +++         P EV     +HA   + EA    +R L E           V ++V  G
Sbjct  178  MVSLVELDAEGDPGEVVNAAHIHANTVLTEA----SRRLPE--------GHKVTVEVAHG  225

Query  240  NGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP  291
                + +D  +W DGEIL +G+S   +  ++F+GS + K++R  PVP++V+P
Sbjct  226  RTIEECIDDLEWDDGEILIVGSSRLAERNKLFIGSTANKVLRALPVPMVVIP  277



Lambda     K      H
   0.321    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 480200259616


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40