BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2319c
Length=292
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609456|ref|NP_216835.1| hypothetical protein Rv2319c [Mycob... 578 3e-163
gi|121638205|ref|YP_978429.1| hypothetical protein BCG_2340c [My... 575 3e-162
gi|289575010|ref|ZP_06455237.1| conserved hypothetical protein [... 575 3e-162
gi|339295223|gb|AEJ47334.1| hypothetical protein CCDC5079_2144 [... 518 5e-145
gi|289443836|ref|ZP_06433580.1| conserved hypothetical protein [... 433 1e-119
gi|183983599|ref|YP_001851890.1| hypothetical protein MMAR_3620 ... 429 3e-118
gi|240170966|ref|ZP_04749625.1| hypothetical protein MkanA1_1676... 426 2e-117
gi|118616954|ref|YP_905286.1| hypothetical protein MUL_1245 [Myc... 423 2e-116
gi|296166351|ref|ZP_06848786.1| universal stress protein [Mycoba... 391 8e-107
gi|294994583|ref|ZP_06800274.1| hypothetical protein Mtub2_08715... 343 1e-92
gi|169630922|ref|YP_001704571.1| hypothetical protein MAB_3843 [... 309 4e-82
gi|118471262|ref|YP_885794.1| universal stress protein family pr... 308 8e-82
gi|258655462|ref|YP_003204618.1| UspA domain-containing protein ... 234 1e-59
gi|262203655|ref|YP_003274863.1| UspA domain-containing protein ... 226 3e-57
gi|336118843|ref|YP_004573615.1| hypothetical protein MLP_31980 ... 226 4e-57
gi|84496502|ref|ZP_00995356.1| hypothetical protein JNB_03245 [J... 204 1e-50
gi|152965172|ref|YP_001360956.1| UspA domain-containing protein ... 201 9e-50
gi|334564785|ref|ZP_08517776.1| putative universal stress protei... 173 3e-41
gi|336326692|ref|YP_004606658.1| universal stress protein [Coryn... 161 1e-37
gi|68537168|ref|YP_251873.1| putative universal stress protein [... 159 4e-37
gi|145222587|ref|YP_001133265.1| UspA domain-containing protein ... 154 2e-35
gi|315443052|ref|YP_004075931.1| universal stress protein UspA-l... 153 3e-35
gi|50084463|ref|YP_045973.1| hypothetical protein ACIAD1277 [Aci... 151 1e-34
gi|289754422|ref|ZP_06513800.1| conserved hypothetical protein [... 148 9e-34
gi|260904458|ref|ZP_05912780.1| putative Usp family protein [Bre... 148 1e-33
gi|111020001|ref|YP_702973.1| hypothetical protein RHA1_ro03012 ... 146 3e-33
gi|332670276|ref|YP_004453284.1| UspA domain-containing protein ... 144 1e-32
gi|213966452|ref|ZP_03394627.1| putative universal stress protei... 143 3e-32
gi|271964301|ref|YP_003338497.1| hypothetical protein Sros_2796 ... 143 4e-32
gi|226307542|ref|YP_002767502.1| hypothetical protein RER_40550 ... 142 9e-32
gi|229489291|ref|ZP_04383155.1| universal stress protein [Rhodoc... 141 1e-31
gi|237786624|ref|YP_002907329.1| universal stress protein [Coryn... 137 2e-30
gi|108800336|ref|YP_640533.1| hypothetical protein Mmcs_3370 [My... 136 4e-30
gi|337291876|ref|YP_004630897.1| hypothetical protein CULC22_022... 134 2e-29
gi|300859458|ref|YP_003784441.1| hypothetical protein cpfrc_0204... 133 3e-29
gi|145296979|ref|YP_001139800.1| hypothetical protein cgR_2878 [... 132 4e-29
gi|19554183|ref|NP_602185.1| hypothetical protein NCgl2887 [Cory... 132 5e-29
gi|62391837|ref|YP_227239.1| hypothetical protein cg3316 [Coryne... 132 5e-29
gi|334697847|gb|AEG82644.1| hypothetical protein CULC809_02120 [... 132 6e-29
gi|226366463|ref|YP_002784246.1| Usp family protein [Rhodococcus... 130 3e-28
gi|172041671|ref|YP_001801385.1| putative universal stress prote... 129 4e-28
gi|38234832|ref|NP_940599.1| hypothetical protein DIP2297 [Coryn... 129 5e-28
gi|340795956|ref|YP_004761419.1| hypothetical protein CVAR_3004 ... 129 6e-28
gi|118467904|ref|YP_889712.1| universal stress protein family pr... 126 3e-27
gi|119961252|ref|YP_945874.1| universal stress family domain-con... 126 4e-27
gi|25029383|ref|NP_739437.1| hypothetical protein CE2827 [Coryne... 124 1e-26
gi|296118488|ref|ZP_06837066.1| putative universal stress protei... 121 1e-25
gi|227834268|ref|YP_002835975.1| universal stress protein [Coryn... 120 2e-25
gi|227506307|ref|ZP_03936356.1| universal stress protein [Coryne... 119 6e-25
gi|116671639|ref|YP_832572.1| UspA domain-containing protein [Ar... 117 2e-24
>gi|15609456|ref|NP_216835.1| hypothetical protein Rv2319c [Mycobacterium tuberculosis H37Rv]
gi|15841824|ref|NP_336861.1| universal stress protein [Mycobacterium tuberculosis CDC1551]
gi|31793502|ref|NP_855995.1| hypothetical protein Mb2346c [Mycobacterium bovis AF2122/97]
64 more sequence titles
Length=292
Score = 578 bits (1491), Expect = 3e-163, Method: Compositional matrix adjust.
Identities = 291/292 (99%), Positives = 292/292 (100%), Gaps = 0/292 (0%)
Query 1 VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
+TIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL
Sbjct 1 MTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
Query 61 AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV 120
AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV
Sbjct 61 AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV 120
Query 121 LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV 180
LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV
Sbjct 121 LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV 180
Query 181 PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGN 240
PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGN
Sbjct 181 PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGN 240
Query 241 GWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG 292
GWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG
Sbjct 241 GWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG 292
>gi|121638205|ref|YP_978429.1| hypothetical protein BCG_2340c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224990699|ref|YP_002645386.1| hypothetical protein JTY_2334 [Mycobacterium bovis BCG str. Tokyo
172]
gi|121493853|emb|CAL72328.1| Hypothetical protein BCG_2340c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224773812|dbj|BAH26618.1| hypothetical protein JTY_2334 [Mycobacterium bovis BCG str. Tokyo
172]
gi|341602243|emb|CCC64917.1| hypothetical protein BCGM_2324c [Mycobacterium bovis BCG str.
Moreau RDJ]
Length=292
Score = 575 bits (1482), Expect = 3e-162, Method: Compositional matrix adjust.
Identities = 290/292 (99%), Positives = 291/292 (99%), Gaps = 0/292 (0%)
Query 1 VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
+TIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL
Sbjct 1 MTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
Query 61 AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV 120
AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEA VLVLGSFPSGRRARV
Sbjct 61 AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAGVLVLGSFPSGRRARV 120
Query 121 LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV 180
LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV
Sbjct 121 LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV 180
Query 181 PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGN 240
PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGN
Sbjct 181 PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGN 240
Query 241 GWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG 292
GWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG
Sbjct 241 GWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG 292
>gi|289575010|ref|ZP_06455237.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|339632344|ref|YP_004723986.1| hypothetical protein MAF_23310 [Mycobacterium africanum GM041182]
gi|289539441|gb|EFD44019.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|339331700|emb|CCC27401.1| hypothetical protein MAF_23310 [Mycobacterium africanum GM041182]
Length=292
Score = 575 bits (1482), Expect = 3e-162, Method: Compositional matrix adjust.
Identities = 290/292 (99%), Positives = 291/292 (99%), Gaps = 0/292 (0%)
Query 1 VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
+TIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL
Sbjct 1 MTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
Query 61 AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV 120
AAASAREAQRYL RLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV
Sbjct 61 AAASAREAQRYLCRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV 120
Query 121 LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV 180
LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV
Sbjct 121 LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV 180
Query 181 PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGN 240
PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGN
Sbjct 181 PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGN 240
Query 241 GWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG 292
GWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG
Sbjct 241 GWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG 292
>gi|339295223|gb|AEJ47334.1| hypothetical protein CCDC5079_2144 [Mycobacterium tuberculosis
CCDC5079]
Length=260
Score = 518 bits (1334), Expect = 5e-145, Method: Compositional matrix adjust.
Identities = 259/260 (99%), Positives = 260/260 (100%), Gaps = 0/260 (0%)
Query 33 VATIVRRHWPTPSLARVDAEYELWSEQLAAASAREAQRYLRRLADGIEVSYHHRAHRSVS 92
+ATIVRRHWPTPSLARVDAEYELWSEQLAAASAREAQRYLRRLADGIEVSYHHRAHRSVS
Sbjct 1 MATIVRRHWPTPSLARVDAEYELWSEQLAAASAREAQRYLRRLADGIEVSYHHRAHRSVS 60
Query 93 AGLLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPRRYRCYTDRLT 152
AGLLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPRRYRCYTDRLT
Sbjct 61 AGLLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPRRYRCYTDRLT 120
Query 153 RLSCGYSATSGSVDVVRRCGHLASRYGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWA 212
RLSCGYSATSGSVDVVRRCGHLASRYGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWA
Sbjct 121 RLSCGYSATSGSVDVVRRCGHLASRYGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWA 180
Query 213 AQARELLEKLRINGVVSEDVVLQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFL 272
AQARELLEKLRINGVVSEDVVLQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFL
Sbjct 181 AQARELLEKLRINGVVSEDVVLQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFL 240
Query 273 GSWSGKIIRYSPVPVLVLPG 292
GSWSGKIIRYSPVPVLVLPG
Sbjct 241 GSWSGKIIRYSPVPVLVLPG 260
>gi|289443836|ref|ZP_06433580.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289570450|ref|ZP_06450677.1| hypothetical protein TBJG_00817 [Mycobacterium tuberculosis T17]
gi|289750924|ref|ZP_06510302.1| hypothetical protein TBDG_01134 [Mycobacterium tuberculosis T92]
gi|289754423|ref|ZP_06513801.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289416755|gb|EFD13995.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289544204|gb|EFD47852.1| hypothetical protein TBJG_00817 [Mycobacterium tuberculosis T17]
gi|289691511|gb|EFD58940.1| hypothetical protein TBDG_01134 [Mycobacterium tuberculosis T92]
gi|289695010|gb|EFD62439.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=221
Score = 433 bits (1114), Expect = 1e-119, Method: Compositional matrix adjust.
Identities = 219/221 (99%), Positives = 220/221 (99%), Gaps = 0/221 (0%)
Query 1 VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
+TIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL
Sbjct 1 MTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
Query 61 AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV 120
AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV
Sbjct 61 AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV 120
Query 121 LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV 180
LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV
Sbjct 121 LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV 180
Query 181 PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEK 221
PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLE
Sbjct 181 PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEN 221
Score = 42.4 bits (98), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/46 (42%), Positives = 29/46 (64%), Gaps = 0/46 (0%)
Query 246 LDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP 291
LD + + E+L LG+ P G ARV +GS + +++ SPVPV + P
Sbjct 96 LDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITP 141
>gi|183983599|ref|YP_001851890.1| hypothetical protein MMAR_3620 [Mycobacterium marinum M]
gi|183176925|gb|ACC42035.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=290
Score = 429 bits (1103), Expect = 3e-118, Method: Compositional matrix adjust.
Identities = 215/292 (74%), Positives = 251/292 (86%), Gaps = 2/292 (0%)
Query 1 VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
+T+VVGYLAG+VGPSALHLAVR AR TSLTVATI+ + W TP LA+ D Y W+EQ+
Sbjct 1 MTVVVGYLAGRVGPSALHLAVRAARTLDTSLTVATILTKPWLTPPLAKGD--YSEWAEQV 58
Query 61 AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV 120
A S +EA RYLR +A GIEVSY HR HRSVS GL++VVEEL+AE+L+LGSFP+GRRARV
Sbjct 59 AEDSEKEAHRYLRTVATGIEVSYCHREHRSVSGGLIEVVEELDAEMLILGSFPNGRRARV 118
Query 121 LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV 180
LIGSTAD +LHSSPVPVAI+PR+Y TDRLTR++CGY+AT+ SV+VVRRC LA +YGV
Sbjct 119 LIGSTADWVLHSSPVPVAISPRQYHSRTDRLTRITCGYAATTDSVEVVRRCAELARQYGV 178
Query 181 PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGN 240
P+RVITFAVRGRTMYPPEVGLHAEA VLEAWA QAR +LE L+ +G+V ED VL+V+TGN
Sbjct 179 PLRVITFAVRGRTMYPPEVGLHAEALVLEAWAEQARGMLEMLQKDGIVEEDAVLEVITGN 238
Query 241 GWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG 292
GW ALDAADW+DGEILA+GTSP GD+ARVFLGS SGKIIR+SPVPVLVLPG
Sbjct 239 GWQHALDAADWEDGEILAVGTSPRGDIARVFLGSNSGKIIRHSPVPVLVLPG 290
>gi|240170966|ref|ZP_04749625.1| hypothetical protein MkanA1_16768 [Mycobacterium kansasii ATCC
12478]
Length=290
Score = 426 bits (1094), Expect = 2e-117, Method: Compositional matrix adjust.
Identities = 216/292 (74%), Positives = 250/292 (86%), Gaps = 2/292 (0%)
Query 1 VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
+++VVGYLAG+VGPSAL LAVR+AR TSL VATIV + W SL + D YE W+++L
Sbjct 1 MSVVVGYLAGRVGPSALQLAVRMARTLNTSLRVATIVPKPWLPGSLTQPD--YEQWADEL 58
Query 61 AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV 120
AA SA EAQRYLR+++DG+EVSY H HRSVS GL++VVEE AE+LVLGSFPSGRRARV
Sbjct 59 AADSAAEAQRYLRKVSDGVEVSYLHHEHRSVSGGLIEVVEEAHAEMLVLGSFPSGRRARV 118
Query 121 LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV 180
LIGSTAD LLHSSPVPVAI+PR+Y +T RLTRL+CGYSA S +VVRRC LA RYG+
Sbjct 119 LIGSTADWLLHSSPVPVAISPRQYDSHTGRLTRLTCGYSAAPDSAEVVRRCSELARRYGL 178
Query 181 PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGN 240
P+RVITFAVRGRTMYPPEVGLHAE+SVLEAWAAQA+E+LEKL+ +GVV +DVVLQV+TGN
Sbjct 179 PLRVITFAVRGRTMYPPEVGLHAESSVLEAWAAQAQEMLEKLKTDGVVGKDVVLQVITGN 238
Query 241 GWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG 292
GW AL+ DWQDGEILALGTSP GD+ARVFLGS SGKIIR+SPVPVLVLPG
Sbjct 239 GWQHALEHTDWQDGEILALGTSPRGDIARVFLGSRSGKIIRHSPVPVLVLPG 290
>gi|118616954|ref|YP_905286.1| hypothetical protein MUL_1245 [Mycobacterium ulcerans Agy99]
gi|118569064|gb|ABL03815.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=290
Score = 423 bits (1087), Expect = 2e-116, Method: Compositional matrix adjust.
Identities = 212/292 (73%), Positives = 250/292 (86%), Gaps = 2/292 (0%)
Query 1 VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
+T+VVGYLAG+VGPSALHLAVR AR TSLTVATI+ + W TP LA+ D Y W+EQ+
Sbjct 1 MTVVVGYLAGRVGPSALHLAVRAARTLDTSLTVATILTKPWLTPPLAKGD--YSEWAEQV 58
Query 61 AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV 120
A S +EA RYLR +A GIEVSY HR HRSVS GL++VVEEL+A++L+LGSFP+GRRARV
Sbjct 59 AEDSEKEAHRYLRTVATGIEVSYCHREHRSVSGGLIEVVEELDAQMLILGSFPNGRRARV 118
Query 121 LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV 180
LIGSTAD +LHSSPVPVAI+PR+Y TDRLTR++CGY+AT+ SV+VVRRC LA +YGV
Sbjct 119 LIGSTADWVLHSSPVPVAISPRQYHSRTDRLTRITCGYAATTDSVEVVRRCAELARQYGV 178
Query 181 PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGN 240
P+RVITFAVR RTMYPPEVGLHAEA VLEAWA QAR +LE L+ +G+V ED VL+V+TGN
Sbjct 179 PLRVITFAVRVRTMYPPEVGLHAEALVLEAWAEQARGMLEMLQKDGIVEEDAVLEVITGN 238
Query 241 GWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG 292
GW ALDAADW+DGEILA+GTSP GD+ARVFLGS SG+IIR+SPVPVLVLPG
Sbjct 239 GWQHALDAADWEDGEILAVGTSPRGDIARVFLGSNSGRIIRHSPVPVLVLPG 290
>gi|296166351|ref|ZP_06848786.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295898261|gb|EFG77832.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=292
Score = 391 bits (1004), Expect = 8e-107, Method: Compositional matrix adjust.
Identities = 198/292 (68%), Positives = 232/292 (80%), Gaps = 0/292 (0%)
Query 1 VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
+T+VVGY AGKVG S LHL VR+AR TSLTVATIV + W TPS ARVDAE+ELW++ L
Sbjct 1 MTVVVGYRAGKVGLSGLHLGVRIARTRGTSLTVATIVPKPWLTPSRARVDAEFELWADAL 60
Query 61 AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV 120
AA SA+EA +L +A+G+ V Y HRAH SVS GLLDV+ E++A+VLVLGS PSG R +V
Sbjct 61 AAESAKEAAGFLDTVAEGVAVDYVHRAHGSVSGGLLDVIHEVDADVLVLGSLPSGGRGQV 120
Query 121 LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV 180
LIGSTAD LLH+SPVPVAI+PR YR + +LTRL+C YSAT SVDVV+RC R+GV
Sbjct 121 LIGSTADWLLHASPVPVAISPRNYRAHQGKLTRLTCAYSATPDSVDVVKRCFEFGQRFGV 180
Query 181 PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGN 240
P+RVITFAVRG+TMYPPEVGL E VL AWA+Q R +LE+L+ GVV EDV LQVVTG
Sbjct 181 PVRVITFAVRGKTMYPPEVGLEVEDQVLRAWASQVRGILEELKTTGVVGEDVALQVVTGR 240
Query 241 GWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG 292
W +AL+ ADWQ+GEILALGT P GD+ RVFLGS S KIIR SPVPVLVLPG
Sbjct 241 SWNEALEKADWQEGEILALGTRPRGDIRRVFLGSRSTKIIRESPVPVLVLPG 292
>gi|294994583|ref|ZP_06800274.1| hypothetical protein Mtub2_08715 [Mycobacterium tuberculosis
210]
Length=177
Score = 343 bits (881), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 169/169 (100%), Positives = 169/169 (100%), Gaps = 0/169 (0%)
Query 124 STADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGVPMR 183
STADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGVPMR
Sbjct 9 STADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGVPMR 68
Query 184 VITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGNGWA 243
VITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGNGWA
Sbjct 69 VITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGNGWA 128
Query 244 QALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG 292
QALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG
Sbjct 129 QALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG 177
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/46 (42%), Positives = 29/46 (64%), Gaps = 0/46 (0%)
Query 96 LDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITP 141
LD + + E+L LG+ P G ARV +GS + +++ SPVPV + P
Sbjct 131 LDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP 176
>gi|169630922|ref|YP_001704571.1| hypothetical protein MAB_3843 [Mycobacterium abscessus ATCC 19977]
gi|169242889|emb|CAM63917.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=293
Score = 309 bits (791), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 158/293 (54%), Positives = 211/293 (73%), Gaps = 1/293 (0%)
Query 1 VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
+T+VVGYL+GK G ALHLAV AR+ +TSLTV T+V + W T S A++DAEY W+++L
Sbjct 1 MTVVVGYLSGKGGKGALHLAVESARVLETSLTVTTVVPKPWTTLSKAKIDAEYAQWAQKL 60
Query 61 AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV 120
+ S EA YL ++ GI+V++H+ AHRSVS GLL+ VE +A+VLV+GS GR +V
Sbjct 61 SDDSKSEATAYLEKIGAGIDVTFHNVAHRSVSGGLLEAVEASDADVLVVGSASEGRLGQV 120
Query 121 LIGSTADRLLHSSPVPVAITPRRYR-CYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYG 179
++GST DRLLHSSPVP+AI+PR YR ++R++CGY T +VDVV++ L R
Sbjct 121 VLGSTGDRLLHSSPVPLAISPRGYRGSRAGTVSRVTCGYPGTEDAVDVVQQAVRLTQRLH 180
Query 180 VPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTG 239
P+RV+TFAVRGRTM VG AE +VL +W Q+ E L +LR G+V+ DV L+VVTG
Sbjct 181 APLRVVTFAVRGRTMLTAGVGPEAEDAVLASWVTQSEEALSELRQAGIVTADVELKVVTG 240
Query 240 NGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG 292
+ W ALD A+W DGE+L LG+ P VARVFLGS + KI+R+SPVPV+V+PG
Sbjct 241 DTWDDALDNAEWNDGELLVLGSRPHSAVARVFLGSRATKIVRHSPVPVVVMPG 293
>gi|118471262|ref|YP_885794.1| universal stress protein family protein [Mycobacterium smegmatis
str. MC2 155]
gi|118172549|gb|ABK73445.1| universal stress protein family protein [Mycobacterium smegmatis
str. MC2 155]
Length=293
Score = 308 bits (788), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 159/293 (55%), Positives = 208/293 (71%), Gaps = 1/293 (0%)
Query 1 VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
+T+VVGYL GK G S LHLAV AR +TSL VAT+V R W TPS AR+DAEY ++ QL
Sbjct 1 MTVVVGYLTGKAGASPLHLAVGAARTLQTSLAVATVVPRPWMTPSPARIDAEYAQYAAQL 60
Query 61 AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV 120
A+ SA +A++ + L +EV++H AHRSVS GL++ VE L AE LVLGS G+ +V
Sbjct 61 ASTSAEQARQVISELDSELEVTFHKFAHRSVSDGLMEAVESLNAEALVLGSAADGKLGQV 120
Query 121 LIGSTADRLLHSSPVPVAITPRRY-RCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYG 179
++GSTADRLLHS PVP+ ++PR Y R + L+R++ Y T +VDVV R L R G
Sbjct 121 VVGSTADRLLHSCPVPLVVSPRGYRRPRSGGLSRITVAYPGTRDAVDVVERIAALTQRLG 180
Query 180 VPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTG 239
V MRV+TFAVRGR+MYPP VGL E +L+ W QA++ L +L +GV+ EDV + V +G
Sbjct 181 VTMRVVTFAVRGRSMYPPLVGLSKEDLILQEWIEQAQDSLRRLATDGVIGEDVEVVVASG 240
Query 240 NGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG 292
+ W +ALD+ +W +GE+LA+GTSP G V RVFLG KI+RYSP+PVLVLPG
Sbjct 241 SAWDEALDSIEWIEGEVLAIGTSPAGAVRRVFLGERGTKILRYSPLPVLVLPG 293
>gi|258655462|ref|YP_003204618.1| UspA domain-containing protein [Nakamurella multipartita DSM
44233]
gi|258558687|gb|ACV81629.1| UspA domain protein [Nakamurella multipartita DSM 44233]
Length=320
Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 126/288 (44%), Positives = 181/288 (63%), Gaps = 5/288 (1%)
Query 1 VTIVVGYLAGKVGPSALHLAVRVARMHKTS-LTVATIVRRHWPTPSLARVDAEYELWSEQ 59
+TIVVG+ K G AL LAV +AR + + V T+ +HW TPS+A+VDAE++ W+
Sbjct 1 MTIVVGFSPHKGGRDALELAVLLARSGRPEPVVVTTVTPQHWTTPSMAKVDAEFQAWATA 60
Query 60 LAAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRAR 119
A+ +A++++ A + VSY A RSV A L + E ++LVLGS GR +
Sbjct 61 QGEAALDQARQFMAAKAPELSVSYGQVAGRSVPAALSRSCADAEGDLLVLGSSRDGRSGQ 120
Query 120 VLIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYG 179
V++GST++ LLHSSP+PVAI PR YR + ++R+SC YS T S D++ ++ R G
Sbjct 121 VVLGSTSEPLLHSSPLPVAIAPRGYRAHCTAISRMSCSYSGTEESGDLLLAVAGMSRRIG 180
Query 180 VPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQAREL----LEKLRINGVVSEDVVLQ 235
+RV+TF VRGRTMYPPEVGL AE VL W Q R+ L++L ++ +
Sbjct 181 GALRVVTFGVRGRTMYPPEVGLGAEDMVLSQWTEQVRQFQRAALDRLSELALLPASASAE 240
Query 236 VVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYS 283
+ TG+ WA +D +W+ GE+L +G+SP G +ARVF+GS + KIIRYS
Sbjct 241 IATGSDWADVMDELEWEPGEVLVVGSSPLGTLARVFVGSRATKIIRYS 288
>gi|262203655|ref|YP_003274863.1| UspA domain-containing protein [Gordonia bronchialis DSM 43247]
gi|262087002|gb|ACY22970.1| UspA domain protein [Gordonia bronchialis DSM 43247]
Length=294
Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 120/293 (41%), Positives = 181/293 (62%), Gaps = 2/293 (0%)
Query 1 VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
+TI+VGY+ G+ G + L +A T L VAT+V R W TPS A+VDAE+ W++ +
Sbjct 1 MTILVGYVPGEGGAGGVQLGAMLAESLHTDLVVATVVPRPWTTPSPAKVDAEFVAWTDNV 60
Query 61 AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV 120
+ E Y++ + + HR+ S+ LL +E++A+ LV+ S G+ ++
Sbjct 61 VERAHAEVTEYMQIYPPQLRWRFTRLDHRTASSALLSYAQEIDADALVVSSTGDGQPGQI 120
Query 121 LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDV--VRRCGHLASRY 178
++GSTAD LLH S VPV I+PR YR D L + +A +GS DV ++R L+ R
Sbjct 121 VVGSTADSLLHRSTVPVGISPRGYRSPKDGLLKRVTVATAAAGSADVSVIQRARELSDRM 180
Query 179 GVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVT 238
+RV+TFAVRG MYPP VG+ E +V++ W +QA E +L ++GV+ V +
Sbjct 181 DAELRVVTFAVRGGAMYPPLVGISTEDAVVDQWKSQATEAHRQLVMDGVIDSRTPCMVAS 240
Query 239 GNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP 291
G GW +A+DA DW DGE+L +G++ G +ARVF+G+ + K+IR+SPVPV+VLP
Sbjct 241 GRGWREAVDAVDWLDGEVLFIGSTREGLLARVFIGTRATKLIRHSPVPVIVLP 293
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/143 (33%), Positives = 65/143 (46%), Gaps = 19/143 (13%)
Query 9 AGKVGPSALHLAVRVARMHKTSLTVATIVRR----HWPTPSLARVDAEYELWSEQLAAAS 64
AG S + A ++ L V T R + P ++ DA + W Q
Sbjct 162 AGSADVSVIQRARELSDRMDAELRVVTFAVRGGAMYPPLVGISTEDAVVDQWKSQ----- 216
Query 65 AREAQRYLRRLADGIEVSYHHRAHRSVSAG-----LLDVVEELEAEVLVLGSFPSGRRAR 119
A EA R L + DG+ R V++G +D V+ L+ EVL +GS G AR
Sbjct 217 ATEAHRQL--VMDGV---IDSRTPCMVASGRGWREAVDAVDWLDGEVLFIGSTREGLLAR 271
Query 120 VLIGSTADRLLHSSPVPVAITPR 142
V IG+ A +L+ SPVPV + PR
Sbjct 272 VFIGTRATKLIRHSPVPVIVLPR 294
>gi|336118843|ref|YP_004573615.1| hypothetical protein MLP_31980 [Microlunatus phosphovorus NM-1]
gi|334686627|dbj|BAK36212.1| hypothetical protein MLP_31980 [Microlunatus phosphovorus NM-1]
Length=299
Score = 226 bits (575), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 128/292 (44%), Positives = 183/292 (63%), Gaps = 1/292 (0%)
Query 1 VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
+T++VGY+ K G +L L V+ A + V T+V R W TPSLA+VDAE+ ++ L
Sbjct 1 MTVLVGYVPHKGGRGSLDLGVQFAYALGQPMRVVTVVPRQWSTPSLAKVDAEFGEYARLL 60
Query 61 AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV 120
+ +A+ YL + +++SY RS++A LL+ E+ A VLVLGS G R+
Sbjct 61 GEHAEAKAREYLTDTSVEVDISYCALPGRSITAALLEAAEDCAASVLVLGSSTDGAVGRI 120
Query 121 LIGSTADRLLHSSPVPVAITPRRYRCYT-DRLTRLSCGYSATSGSVDVVRRCGHLASRYG 179
++GST D+LLH+SPVP+A++PR YR D +R++C +S SV VV L R G
Sbjct 121 VVGSTTDKLLHASPVPLALSPRGYRSVAADGFSRVTCAFSDAEESVKVVGAAVALGRRVG 180
Query 180 VPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTG 239
RV +F VRG TMYPPEVG+ AE SVL++W QA +LR +GV+ +D +
Sbjct 181 ARTRVASFGVRGATMYPPEVGISAEDSVLDSWLQQATHAQRELRADGVIGDDTEAVIAAS 240
Query 240 NGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP 291
+ WA +L + +W+ E+L LG+S G +ARVFLGS + K+IR+SPVPVLVLP
Sbjct 241 SSWADSLSSIEWERNELLVLGSSTVGPIARVFLGSRATKLIRHSPVPVLVLP 292
Score = 40.0 bits (92), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/103 (38%), Positives = 53/103 (52%), Gaps = 9/103 (8%)
Query 42 PTPSLARVDAEYELWSEQLAAASAREAQRYLRRLADGI--EVSYHHRAHRSVSAGLLDVV 99
P ++ D+ + W +Q A AQR LR ADG+ + + A S A L +
Sbjct 198 PEVGISAEDSVLDSWLQQ-----ATHAQRELR--ADGVIGDDTEAVIAASSSWADSLSSI 250
Query 100 EELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPR 142
E E+LVLGS G ARV +GS A +L+ SPVPV + PR
Sbjct 251 EWERNELLVLGSSTVGPIARVFLGSRATKLIRHSPVPVLVLPR 293
>gi|84496502|ref|ZP_00995356.1| hypothetical protein JNB_03245 [Janibacter sp. HTCC2649]
gi|84383270|gb|EAP99151.1| hypothetical protein JNB_03245 [Janibacter sp. HTCC2649]
Length=296
Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 115/296 (39%), Positives = 170/296 (58%), Gaps = 5/296 (1%)
Query 1 VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
+T++VG+ G S L LA +AR L + ++V WPTP D ++ WS +
Sbjct 1 MTLLVGFRGGADDLSGLELAATLARSSGVPLEILSVVPASWPTPIAGAADRDFARWSSEQ 60
Query 61 AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV 120
A+ REA++ + + +E + + RSV+ GLLD V E A+++V+GS +V
Sbjct 61 GDAAVREAEKLVAEICPDLETTTRWTSSRSVATGLLDAVAEAGADMIVIGSRSDAGHGQV 120
Query 121 LIGSTADRLLHSSPVPVAITPRRY-RCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYG 179
+GS A RLLHSS VPVA+ R Y + R+ R++C + S+ + R + + G
Sbjct 121 NVGSIASRLLHSSRVPVALATRGYHQSEAARVRRVTCAFRGDESSLSTLERTAIICTEVG 180
Query 180 VPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQAR----ELLEKLRINGVVSEDVVLQ 235
+RV TFAVRGRTMYPPEVG+ AE +VL AW QA + +E L+ G E +
Sbjct 181 AELRVATFAVRGRTMYPPEVGVAAEDAVLHAWLEQAGRAQVDAVEGLKATGTAPEALTTV 240
Query 236 VVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP 291
V G W ALDA W+ ++L +G+S G + R+FLGS + KI+R+SPVPV+V+P
Sbjct 241 VGAGRSWTAALDAVGWERDDVLVVGSSREGRLERLFLGSSATKIVRHSPVPVIVVP 296
>gi|152965172|ref|YP_001360956.1| UspA domain-containing protein [Kineococcus radiotolerans SRS30216]
gi|151359689|gb|ABS02692.1| UspA domain protein [Kineococcus radiotolerans SRS30216]
Length=293
Score = 201 bits (512), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 130/295 (45%), Positives = 175/295 (60%), Gaps = 5/295 (1%)
Query 1 VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
+T++ YL GK G + L LA ++AR L+VAT++ W + A VDA+ E WS L
Sbjct 1 MTVLAAYLPGKGGRATLDLAAQLARGLGVPLSVATVLPGPWDATTPATVDAQLEGWSAVL 60
Query 61 AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV 120
AA++ A+ +L R A G EV + R RSV A L+D+ A LVLGS P GR +V
Sbjct 61 AASAESSARAHLARTAPGAEVRFLARPGRSVPATLVDLAAGTGAAALVLGSSPRGRPGQV 120
Query 121 LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV 180
++GSTA RLLHSSP+ VA+ PR +R R++C + G +VV R A R G
Sbjct 121 VVGSTAGRLLHSSPLSVALAPRGHRGGGAGTPRVTCAAAGEDG--EVVARARRFADRVGA 178
Query 181 PMRVITFAVRGRTMYPPEV---GLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVV 237
+RV+T AVRG + P V G AE VL+AW QA L L G + + V
Sbjct 179 RLRVLTLAVRGPAPWAPAVSVLGPRAEEEVLDAWTEQAHRSLRVLSEEGALPPEAETAVG 238
Query 238 TGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG 292
G GW +ALDA DW+ GE+L +G+ P G VARVFLGS + +I+R++PVPV+VLPG
Sbjct 239 AGQGWREALDAVDWEPGELLVVGSRPHGPVARVFLGSRATRILRHAPVPVVVLPG 293
>gi|334564785|ref|ZP_08517776.1| putative universal stress protein [Corynebacterium bovis DSM
20582]
Length=315
Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 103/302 (35%), Positives = 162/302 (54%), Gaps = 18/302 (5%)
Query 3 IVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELW--SEQL 60
I+V + G A +AR + T++ R W R ++++E W +E
Sbjct 18 ILVTWRPESTGTECADYAAWLARTQPVVVRTVTVISRVWSPQPNGRTNSDFERWLAAEST 77
Query 61 A-AASAREAQRYLRRLADGIEVSYHHRAHRSV-------SAGLLDVVEELEAEVLVLGSF 112
A AASAR+A R A G+ S SV + L+ E+ +A++++LGS
Sbjct 78 ACAASARDALR-----AAGVPASMIDPDQPSVVEIDHSETTALISAAEDFDADLMLLGSH 132
Query 113 PSGRRARVLIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCG 172
P+ R R IGSTAD LLH +P+P+ + PR+ + +TR++C Y T S +R
Sbjct 133 PAAPRGRFRIGSTADALLHCAPLPLGLAPRQPKLSKRGVTRVNCSYVDTEQSHQALRHAA 192
Query 173 HLASRYGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSE-- 230
LA R+GVP+R++ F+ RG TMYP EV + ++ W QA LL++ R +
Sbjct 193 DLAHRWGVPLRLVAFSPRGATMYPTEVSFDESSDMMVEWREQALALLDRGRDRALERHGD 252
Query 231 -DVVLQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLV 289
V+ + +G GW+ A++A W+ G++L LG+S GD RVF+G + +I+R+SP PVL+
Sbjct 253 LHVLTETGSGYGWSGAMNALKWKKGDLLVLGSSVLGDFNRVFIGPSTNQIVRHSPAPVLI 312
Query 290 LP 291
P
Sbjct 313 SP 314
>gi|336326692|ref|YP_004606658.1| universal stress protein [Corynebacterium resistens DSM 45100]
gi|336102674|gb|AEI10494.1| universal stress protein [Corynebacterium resistens DSM 45100]
Length=318
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/298 (34%), Positives = 158/298 (54%), Gaps = 10/298 (3%)
Query 3 IVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQLAA 62
+++ + A +A V R + + AT++ R W A+ EY W
Sbjct 21 VLMAWRPQSTSDEAAEVAAWVGRTEEIRVRAATVIPRAWEIQPGAQEFQEYRNWVMAETQ 80
Query 63 ASAREAQRYLRR--LADGIEVSYHHRAHRSVSAG----LLDVVEELEAEVLVLGSFPSGR 116
A A L + L G+ ++ A ++ L+ E+ EA+ L+LGS P+
Sbjct 81 ACMNAALSALGKAGLPQGM-LAEEDPAVVDIAPTETKVLIKAAEDFEADFLLLGSHPAAP 139
Query 117 RARVLIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLAS 176
R+R +GSTAD LLH +P+PV + PR + + +TR+SC Y T S + +RR LA+
Sbjct 140 RSRFRMGSTADALLHCAPLPVLLAPRSPKLAKNGVTRVSCSYVDTVQSHEALRRASDLAA 199
Query 177 RYGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLR---INGVVSEDVV 233
R+ VP+R++ F+ G TMYP V + ++ W QA LL++ R +N + V
Sbjct 200 RWNVPLRLVAFSPSGATMYPTNVPFDDNSDMMVEWREQALALLDRGRDRALNRHPNLKVQ 259
Query 234 LQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP 291
L V +G GW+ A++A W+ G++L +G+S G RVF+G + +I+R+SPVPVLV P
Sbjct 260 LDVGSGYGWSGAINALKWKKGDLLVMGSSELGQFNRVFIGPSTNQILRHSPVPVLVSP 317
>gi|68537168|ref|YP_251873.1| putative universal stress protein [Corynebacterium jeikeium K411]
gi|260579529|ref|ZP_05847400.1| universal stress protein [Corynebacterium jeikeium ATCC 43734]
gi|68264767|emb|CAI38255.1| putative universal stress protein [Corynebacterium jeikeium K411]
gi|258602300|gb|EEW15606.1| universal stress protein [Corynebacterium jeikeium ATCC 43734]
Length=308
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 98/288 (35%), Positives = 155/288 (54%), Gaps = 16/288 (5%)
Query 13 GPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQLAAASAREAQRYL 72
G A +A + R +L AT++ R W D+ Y W E+ + A + AQ+ L
Sbjct 23 GDEAAQVAAWIGRTETIALRTATVISRSWTAQPELEFDS-YSEWIEKESKAVSSAAQKAL 81
Query 73 RRL--------ADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARVLIGS 124
A+ V+ H S + L+D E A+++VLGS P+ +R IGS
Sbjct 82 ALAKLPEKMLDAEPSTVTVDH----SETKALIDAAAEFNADMMVLGSHPAAPHSRFRIGS 137
Query 125 TADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGVPMRV 184
TAD LLH +P+P+ + PR + +TR++C Y T S + +RR LA R+ VP+R+
Sbjct 138 TADALLHYAPLPLLLAPRTPKLSKRGVTRVNCSYIDTDQSHEALRRAADLAHRWNVPLRL 197
Query 185 ITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLR---INGVVSEDVVLQVVTGNG 241
+ F+ RG TMYP E + ++ W QA LL++ R +N V ++V +G G
Sbjct 198 VAFSPRGATMYPTETEFIDNSDMMVEWREQALALLDRGRDRALNRHSDLTVQMEVGSGYG 257
Query 242 WAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLV 289
W+ A++A W+ G++L +G+S G RVF+G + +I+R+SPVPVL+
Sbjct 258 WSGAINALKWKKGDLLVMGSSTLGGFHRVFIGPSTNQILRHSPVPVLL 305
>gi|145222587|ref|YP_001133265.1| UspA domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|145215073|gb|ABP44477.1| UspA domain protein [Mycobacterium gilvum PYR-GCK]
Length=295
Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/295 (34%), Positives = 160/295 (55%), Gaps = 9/295 (3%)
Query 1 VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
+TI+ G+ A GP+ LHLA ++AR + IV R WP D + + +
Sbjct 1 MTIIAGFSASGQGPAPLHLAAQLARCTGERIVAVAIVERQWPQ----NADPLEDEYLNYV 56
Query 61 AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV 120
A + + + + +L ++V SV +GL ++ EE+ A+V+V+GS SG R+
Sbjct 57 GAQAQKSLKEMVDKLPGDLDVWRMVHQAESVPSGLTELAEEMNADVVVVGSSSSGLLGRI 116
Query 121 LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV 180
+GS DRL+H++ VPVAI PR Y R+ RL+ Y + +V LA R+
Sbjct 117 ALGSVTDRLVHTAAVPVAIAPRGYPLQDSRIERLTVAYGGHADEGGLVAAGAELARRWSA 176
Query 181 PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARE----LLEKLRINGVVSEDVVLQV 236
+R+ +F VR TM+ + AE V++ W + +E LE +R +GV + D + +
Sbjct 177 TLRIASFTVRPVTMFSGAIETSAEDLVVQQWVRRTQEKIAAQLEAVR-SGVDTLDAEVVI 235
Query 237 VTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP 291
G W A++A DW G++L LG+ G VA+VFLGS + +I+R+SPVP +++P
Sbjct 236 GAGATWRDAVEAIDWGSGDVLVLGSGAAGQVAQVFLGSAAARILRHSPVPTMIVP 290
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Query 97 DVVEELE---AEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPRR 143
D VE ++ +VLVLGS +G+ A+V +GS A R+L SPVP I PRR
Sbjct 243 DAVEAIDWGSGDVLVLGSGAAGQVAQVFLGSAAARILRHSPVPTMIVPRR 292
>gi|315443052|ref|YP_004075931.1| universal stress protein UspA-like protein [Mycobacterium sp.
Spyr1]
gi|315261355|gb|ADT98096.1| universal stress protein UspA-like protein [Mycobacterium sp.
Spyr1]
Length=295
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 99/295 (34%), Positives = 159/295 (54%), Gaps = 9/295 (3%)
Query 1 VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
+TI+ G+ A GP+ LHLA ++AR + IV R WP D + + +
Sbjct 1 MTIIAGFSASGQGPAPLHLAAQLARCTGERIVAVAIVERQWPQ----NADPLEDEYLNYV 56
Query 61 AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV 120
A + + + + +L ++V SV +GL ++ EE+ A+V+V+GS SG R+
Sbjct 57 GAQAQKSLKEMVDKLPGDLDVWRMVHQAESVPSGLTELAEEMNADVVVVGSSSSGLLGRI 116
Query 121 LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV 180
+GS DRL+H++ VPVAI PR Y R+ RL+ Y +V LA R+
Sbjct 117 ALGSVTDRLVHTAAVPVAIAPRGYPLQDSRIERLTVAYGGHVDEGGLVAAGAELARRWSA 176
Query 181 PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARE----LLEKLRINGVVSEDVVLQV 236
+R+ +F VR TM+ + AE V++ W + +E LE +R +GV + D + +
Sbjct 177 TLRIASFTVRPVTMFSGAIETSAEDLVVQQWVRRTQEKIAAQLEAVR-SGVDTLDAEVVI 235
Query 237 VTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP 291
G W A++A DW G++L LG+ G VA+VFLGS + +I+R+SPVP +++P
Sbjct 236 GAGATWRDAVEAIDWGSGDVLVLGSGAAGQVAQVFLGSAAARILRHSPVPTMIVP 290
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Query 97 DVVEELE---AEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPRR 143
D VE ++ +VLVLGS +G+ A+V +GS A R+L SPVP I PRR
Sbjct 243 DAVEAIDWGSGDVLVLGSGAAGQVAQVFLGSAAARILRHSPVPTMIVPRR 292
>gi|50084463|ref|YP_045973.1| hypothetical protein ACIAD1277 [Acinetobacter sp. ADP1]
gi|49530439|emb|CAG68151.1| conserved hypothetical protein [Acinetobacter sp. ADP1]
Length=295
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 100/302 (34%), Positives = 150/302 (50%), Gaps = 22/302 (7%)
Query 1 VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
+ +VGY G AL L V +A M + L V IV + W +LA+ D +Y+ +
Sbjct 1 MKFLVGYSNDSSGKDALKLGVALAEMTQGKLIVCHIVAKTWHNIALAKFDEDYDQFL--- 57
Query 61 AAASAREAQRYLR--RLA--DGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGR 116
EAQ+ L +LA IE Y R S+S GL +EL + +V+
Sbjct 58 ----CDEAQKALDDAKLAVPSHIEARYIARTALSISEGLKQTAKELSVDCMVISGARIAI 113
Query 117 RARVLIGSTADRLLHSSPVPVAITPRRY---RCYTDRLTRLSCGYSATSGSVDVVRRCGH 173
+ + G+ AD LL+ +PVA+ P+ + + +T LTRLSC S + S ++ G
Sbjct 114 KGQFFSGTVADELLNQLSLPVALAPKGFAKNQGFTSPLTRLSCAVSGSDQSCNLAISAGE 173
Query 174 LASRYGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVV--SED 231
A + VP+R +TFAVR R + P G AE V+ W RE +E D
Sbjct 174 WAEIFNVPLRFVTFAVRDRDITPTAAGFDAENMVINEW----REQIEAEYAQATQHWESD 229
Query 232 VVLQVVTGNG--WAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLV 289
V + + G+G W +++ + DWQ E+L +GT+ G +V +G + KIIRY+ VP LV
Sbjct 230 VPISLEIGDGPTWKESIQSIDWQASELLIVGTTTSGIFKQVLVGKNAEKIIRYASVPRLV 289
Query 290 LP 291
LP
Sbjct 290 LP 291
Score = 40.4 bits (93), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/109 (27%), Positives = 54/109 (50%), Gaps = 8/109 (7%)
Query 37 VRRHWPTPSLARVDAEYEL---WSEQLAAASAREAQRYLRRLADGIEVSYHHRAHRSVSA 93
VR TP+ A DAE + W EQ+ A A+ Q + + +E+ S+ +
Sbjct 189 VRDRDITPTAAGFDAENMVINEWREQIEAEYAQATQHWESDVPISLEIGDGPTWKESIQS 248
Query 94 GLLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPR 142
++ +E+L++G+ SG +VL+G A++++ + VP + PR
Sbjct 249 -----IDWQASELLIVGTTTSGIFKQVLVGKNAEKIIRYASVPRLVLPR 292
>gi|289754422|ref|ZP_06513800.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289695009|gb|EFD62438.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=82
Score = 148 bits (374), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 72/72 (100%), Positives = 72/72 (100%), Gaps = 0/72 (0%)
Query 221 KLRINGVVSEDVVLQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKII 280
KLRINGVVSEDVVLQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKII
Sbjct 11 KLRINGVVSEDVVLQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKII 70
Query 281 RYSPVPVLVLPG 292
RYSPVPVLVLPG
Sbjct 71 RYSPVPVLVLPG 82
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/46 (42%), Positives = 29/46 (64%), Gaps = 0/46 (0%)
Query 96 LDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITP 141
LD + + E+L LG+ P G ARV +GS + +++ SPVPV + P
Sbjct 36 LDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP 81
>gi|260904458|ref|ZP_05912780.1| putative Usp family protein [Brevibacterium linens BL2]
Length=304
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 102/296 (35%), Positives = 160/296 (55%), Gaps = 9/296 (3%)
Query 1 VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
++IVVG G+ A+ L V +AR + L I WP S A ++EY+ +
Sbjct 1 MSIVVGIAPGQDNRPAVELGVVLARSYGHRLVAVAIDSAAWPM-SPALFESEYQKKLRNV 59
Query 61 AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV 120
A A+ E + L D IE + RS GLL++ ++ A LV+G G+ R+
Sbjct 60 AEAALDEVRALL---PDDIESECLVHSARSSRRGLLEMCQKENAFRLVVGPAADGKPGRI 116
Query 121 LIGSTADRLLHSSPVPVAITPRRYRCYTD-RLTRLSCGYSATSGSVDVVRRCGHLASRYG 179
+GS + LLHS+ +PVA+ P YR + RL RL+ YS +S S D++ +++ G
Sbjct 117 ALGSVSTGLLHSASLPVALAPVGYRVAPEARLRRLTAAYSGSSTSADLILGAAVVSAESG 176
Query 180 VPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQAR----ELLEKLRINGVVSEDVVLQ 235
VP R+ +FA R R + VGL E+SV++ WA R E+L + + + +
Sbjct 177 VPFRIASFAPRSRVISAAGVGLDVESSVIDEWANVIRRDTDEILCSIDHLHIKPGETDVA 236
Query 236 VVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP 291
+ TG WA AL A +W+D E + LG+S G + RV LGS + +I+++SPVP++V+P
Sbjct 237 IGTGPDWASALTAVEWEDPEAMMLGSSGLGAIKRVSLGSHAMRILQHSPVPIVVVP 292
Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/57 (44%), Positives = 33/57 (58%), Gaps = 1/57 (1%)
Query 93 AGLLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPRRYRC-YT 148
A L VE + E ++LGS G RV +GS A R+L SPVP+ + PRR + YT
Sbjct 244 ASALTAVEWEDPEAMMLGSSGLGAIKRVSLGSHAMRILQHSPVPIVVVPRRAKSGYT 300
>gi|111020001|ref|YP_702973.1| hypothetical protein RHA1_ro03012 [Rhodococcus jostii RHA1]
gi|110819531|gb|ABG94815.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=296
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/295 (32%), Positives = 164/295 (56%), Gaps = 9/295 (3%)
Query 1 VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
+TI+ G+ + + G + L+LAV+++R + A IV R WP A+ D + +
Sbjct 1 MTIIAGFSSSRQGTAPLNLAVQISRWTGDKVVAAAIVERPWP----AKDDPIEREYLGYV 56
Query 61 AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV 120
++ R + +L G+++ S+ GL+++V + +A ++V+GS SG RV
Sbjct 57 TEQASHALDRVVGQLPGGMDIPRLVYQSDSIPTGLIELVADHDARLVVVGSSSSGLLGRV 116
Query 121 LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV 180
+GS +RL+H++ VPVAI PR Y + + R++ Y + +V LA ++ V
Sbjct 117 TLGSVTERLVHTAAVPVAIAPRGYPPVPESIRRITVAYGGEADVNGLVAATAELARQWPV 176
Query 181 PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVV--- 237
+R+++F VR TM+ + E V++ WA + R + K ++N V + V V
Sbjct 177 QLRIVSFTVRPMTMFGGAIERSTEDLVVQQWARRTRADIIK-QLNAVRARIPVPDVDVVV 235
Query 238 -TGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP 291
+G+ W +A++A W+ G++LALG+ G A VFLGS + KI+R++PVPVL++P
Sbjct 236 GSGHDWREAVEAVSWEAGDMLALGSGAAGPAAHVFLGSAASKILRHAPVPVLIVP 290
Score = 37.0 bits (84), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/39 (47%), Positives = 25/39 (65%), Gaps = 0/39 (0%)
Query 105 EVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPRR 143
++L LGS +G A V +GS A ++L +PVPV I PR
Sbjct 254 DMLALGSGAAGPAAHVFLGSAASKILRHAPVPVLIVPRN 292
>gi|332670276|ref|YP_004453284.1| UspA domain-containing protein [Cellulomonas fimi ATCC 484]
gi|332339314|gb|AEE45897.1| UspA domain-containing protein [Cellulomonas fimi ATCC 484]
Length=296
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/222 (41%), Positives = 121/222 (55%), Gaps = 12/222 (5%)
Query 78 GIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPV 137
G++V + RSV L DV E +A LVLGS +G V++GSTAD LLH+S VPV
Sbjct 72 GMQVEFVTVRARSVPRALADVAERQDATALVLGSSTAGAHGHVVVGSTADVLLHTSRVPV 131
Query 138 AITPRRYRCYTDR--------LTRLSCGYSATSGSVDVVRRCGHLASRYGVPMRVITFAV 189
A+ PR Y+ + + RL+ + T + VR L V +RV +F V
Sbjct 132 AVAPRGYQAVSVAGAGPLDVPVHRLTVAFGGTPSGREPVRWAQALTREIDVRLRVASFGV 191
Query 190 RGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGNGWAQALDAA 249
R MYPPEVGL EA V E W RE + + + + DV L G WA A+D
Sbjct 192 RAMPMYPPEVGLDIEAEVSEQW----REQVSAAQRDLDLGPDVELVTSVGTSWADAMDRI 247
Query 250 DWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP 291
W+ GE+L G+S G + VFLGS + KI+R+SPVPVLV+P
Sbjct 248 PWEPGEVLIAGSSSVGGLRAVFLGSRAAKIVRHSPVPVLVVP 289
>gi|213966452|ref|ZP_03394627.1| putative universal stress protein [Corynebacterium amycolatum
SK46]
gi|213950901|gb|EEB62308.1| putative universal stress protein [Corynebacterium amycolatum
SK46]
Length=310
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 96/305 (32%), Positives = 159/305 (53%), Gaps = 19/305 (6%)
Query 3 IVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELW----SE 58
I++ + G+ G L A +AR K + V + + R WP SLAR+ + W +E
Sbjct 8 IMIAWRPGEYGTETLAYAAWLARTTKVQIRVVSALSRGWPLTSLARLSTN-DSWVSHETE 66
Query 59 QLAAASAREAQRY-LRR-LADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGS----- 111
L E + LR+ + D V + S + + + EE EA+V++LG+
Sbjct 67 SLEKIIKDELKLAGLRKGMLDDDAVRIIESSSESTT--ICNEAEEFEADVVLLGTRRSNT 124
Query 112 --FPSGRRARVLIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVR 169
+ + R+R GST+D LLH SP+P+ + + +TR+S Y T S +
Sbjct 125 KDWAAKNRSRFTAGSTSDALLHYSPIPLGLAIPGAKLSKHGVTRVSICYIDTPQSHHALN 184
Query 170 RCGHLASRYGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEK--LRINGV 227
+ LA R+ VP+R+++F RG TMYP E G + ++ W QA LL++ R +
Sbjct 185 KAADLAYRWEVPLRLVSFTPRGATMYPTENGYGPSSDLMIEWREQAMGLLDRGIDRAHTR 244
Query 228 VSE-DVVLQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVP 286
+ + +V +GNGW +A+ + W+ G++L LG+S G R+F+GS + I+R+SPVP
Sbjct 245 YPDLSIDAEVASGNGWEEAIQSIKWKKGDLLVLGSSTLGPFGRIFIGSSTNHIVRHSPVP 304
Query 287 VLVLP 291
+L+ P
Sbjct 305 MLITP 309
>gi|271964301|ref|YP_003338497.1| hypothetical protein Sros_2796 [Streptosporangium roseum DSM
43021]
gi|270507476|gb|ACZ85754.1| hypothetical protein Sros_2796 [Streptosporangium roseum DSM
43021]
Length=302
Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 100/293 (35%), Positives = 153/293 (53%), Gaps = 16/293 (5%)
Query 3 IVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQLAA 62
++ G++ G L LA+ +AR LTVA + W TP ++DAE++ + + A
Sbjct 6 VLAGFIPESRGKDGLWLALLLARQTGARLTVAHVHAPAWTTPGPGKIDAEWQAYVAEEAT 65
Query 63 ASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARVLI 122
+ +A+R L + D + + Y HR GL+ +V +A+V+V+GS P G R R+ +
Sbjct 66 QTLDQARRLLADV-DDVPIDYVLHGHRGSGRGLVQLVGRSKADVVVIGSAPGGSRGRIRL 124
Query 123 GSTADRLLHSSPVPVAITPRRY-RCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGVP 181
GSTAD+LLH+SPVPVA+ PR Y + R+ RL+ Y S + VR+ A + VP
Sbjct 125 GSTADQLLHASPVPVALAPRGYGEEHPPRIQRLTVAYRRAPASGEAVRQAAATALQMDVP 184
Query 182 MRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLE---KLRINGVVSEDVVLQVVT 238
+R+IT + G +A + E + RE + K G +V + V+
Sbjct 185 LRLITLVLSG----------GRQARIEEEMLNRLRERVAADLKAAARGHRRVEVEVAVLE 234
Query 239 GNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP 291
G A AL D + G +L +S G + RVFLG S KIIR +P PV++LP
Sbjct 235 GRNVAAALGGTDCE-GSMLICASSETGPLRRVFLGDISSKIIRAAPCPVMMLP 286
>gi|226307542|ref|YP_002767502.1| hypothetical protein RER_40550 [Rhodococcus erythropolis PR4]
gi|226186659|dbj|BAH34763.1| hypothetical protein RER_40550 [Rhodococcus erythropolis PR4]
Length=306
Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 99/289 (35%), Positives = 154/289 (54%), Gaps = 11/289 (3%)
Query 1 VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
+T++ GY +HLA +AR L + ++ P P +ARVDAEY +QL
Sbjct 1 MTLLAGYAPDGDSSGTVHLATLLARSSGEPLVICAVIPSP-PPPGMARVDAEYH---QQL 56
Query 61 AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV 120
A + + + ++V+Y +S S+GLLD+V E EA+++VL S +G V
Sbjct 57 RAEAEAALAKARADMPSDVDVTYVVHEAQSTSSGLLDLVHEHEAKMIVLDSSTAGVFGHV 116
Query 121 LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTR-LSCGYSATSGSVDVVRRCGHLASRYG 179
+GS RLLHSS VPVA+ PR +R + R ++ YS T D+V +A+R
Sbjct 117 ALGSVTSRLLHSSDVPVALAPRGFRTKPGEVVRRVTAAYSGTPDQDDLVLAAATVAARVD 176
Query 180 VPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAA----QARELLEKLRINGVVSEDVVLQ 235
+R+ FAVR Y +G ++ V+ WA + E++R + DV+
Sbjct 177 AGLRLAAFAVRANAQYTTTLGTEGDSPVISEWAEVVERETNAAFERVRALPEIP-DVMES 235
Query 236 VVT-GNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYS 283
V++ G WA+AL+ +W G++L +G+S G +ARVFLGS + KI+RYS
Sbjct 236 VISHGRNWAEALEGVEWDRGDVLTVGSSKAGPLARVFLGSRAAKIVRYS 284
>gi|229489291|ref|ZP_04383155.1| universal stress protein [Rhodococcus erythropolis SK121]
gi|229323784|gb|EEN89541.1| universal stress protein [Rhodococcus erythropolis SK121]
Length=306
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 98/289 (34%), Positives = 154/289 (54%), Gaps = 11/289 (3%)
Query 1 VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
+T++ GY +HLA +AR L + ++ P P +ARVDAEY +QL
Sbjct 1 MTLLAGYAPDGDSSGTVHLATLLARSSGEPLVICAVIPSP-PPPGMARVDAEYH---QQL 56
Query 61 AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV 120
A + + + ++V+Y +S S+GLLD+V E EA+++VL S +G V
Sbjct 57 RAEAEAALAKARADMPSDVDVTYVVHEAQSTSSGLLDLVHEHEAKMIVLDSSTAGVFGHV 116
Query 121 LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTR-LSCGYSATSGSVDVVRRCGHLASRYG 179
+GS RLLHSS VPVA+ PR +R + R ++ YS T D+V +A+R
Sbjct 117 ALGSVTSRLLHSSDVPVALAPRGFRTKPGEVVRRVTAAYSGTPDQDDLVLAAATVAARVD 176
Query 180 VPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAA----QARELLEKLRINGVVSEDVVLQ 235
+R+ FAVR Y +G ++ ++ WA + E++R + DV+
Sbjct 177 AGLRLAAFAVRANAQYTTTLGTEGDSPIISEWAEVVERETNAAFERVRALPEIP-DVMES 235
Query 236 VVT-GNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYS 283
V++ G WA+AL+ +W G++L +G+S G +ARVFLGS + KI+RYS
Sbjct 236 VISHGRNWAEALEGVEWDRGDVLTVGSSKAGPLARVFLGSRAAKIVRYS 284
>gi|237786624|ref|YP_002907329.1| universal stress protein [Corynebacterium kroppenstedtii DSM
44385]
gi|237759536|gb|ACR18786.1| universal stress protein [Corynebacterium kroppenstedtii DSM
44385]
Length=305
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/284 (30%), Positives = 137/284 (49%), Gaps = 7/284 (2%)
Query 15 SALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQLAAASAR---EAQRY 71
SA A AR + T++ WP+ + + +Y+ W + R EA +
Sbjct 21 SAEEFAAWFARTSPAVIRTITVLPSIWPSGAPDELGEDYQRWIRKETKKCERAALEALKE 80
Query 72 LRRLADGIEVS-YHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLL 130
R D ++ + + S + L A +++LGS S R + GSTAD LL
Sbjct 81 ARVPDDSLDATPFEFVTAASETDALSAAATGFNATIVLLGSHASAAEGRFVAGSTADALL 140
Query 131 HSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGVPMRVITFAVR 190
H +PV + + PR R +TR++C Y+ T S + +R+ A R+ VP+R++ F
Sbjct 141 HCAPVSLGLAPRGLRTSKKGVTRVNCAYADTEQSQEALRKACDYAHRWDVPLRLVAFTPH 200
Query 191 GRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSED---VVLQVVTGNGWAQALD 247
G +MYP E V W QA+ +LE+ + + D V L + +G W ++
Sbjct 201 GPSMYPTETPYKHAKEVTRQWRDQAQSILERGQERALARFDDLRVDLAIGSGEDWENSIA 260
Query 248 AADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP 291
DW+ G++L +G+S G FLGS + +I+R SPVP +++P
Sbjct 261 DLDWKKGDLLVVGSSTLGVFGHTFLGSSTNQIVRNSPVPTVIVP 304
>gi|108800336|ref|YP_640533.1| hypothetical protein Mmcs_3370 [Mycobacterium sp. MCS]
gi|119869464|ref|YP_939416.1| UspA domain-containing protein [Mycobacterium sp. KMS]
gi|126435959|ref|YP_001071650.1| UspA domain-containing protein [Mycobacterium sp. JLS]
gi|108770755|gb|ABG09477.1| UspA [Mycobacterium sp. MCS]
gi|119695553|gb|ABL92626.1| UspA domain protein [Mycobacterium sp. KMS]
gi|126235759|gb|ABN99159.1| UspA domain protein [Mycobacterium sp. JLS]
Length=292
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 97/295 (33%), Positives = 158/295 (54%), Gaps = 9/295 (3%)
Query 1 VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
+TIV G+ A + G + LHLA +AR + A IV R WP R D E + +
Sbjct 1 MTIVAGFSASRQGSAPLHLAAEIARCTFDRIIAAAIVERPWPP----RGDPVEEEYLRYV 56
Query 61 AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV 120
AA+ +R + ++ +VS SV GL ++ A+V+V+GS SG RV
Sbjct 57 TAAARTSLERVVAEMSGDADVSVVVHKAASVPEGLTELAAHHHADVVVVGSSSSGLLGRV 116
Query 121 LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV 180
+GS DRL+H++ VPVAI PR Y + + RL+ Y + +V ++ LA R+
Sbjct 117 ALGSVTDRLVHTAAVPVAIAPRSYPPSREPIRRLTVAYGGHADAVRLIETATELAVRWSA 176
Query 181 PMRVITFAVRGRTMYPPEVGLHAEASVLEAW----AAQARELLEKLRINGVVSEDVVLQV 236
+R+ +F+VR ++ + AE+ V+E W A + + L ++R + + + D + V
Sbjct 177 RLRIASFSVRPVAVFSGSIEPSAESLVVEQWSRRTADEITKQLNEIRAH-IAAPDAEVVV 235
Query 237 VTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP 291
+ W A++ W+ G++L LG+ G A VFLGS + KI+R+SPVPV+++P
Sbjct 236 GVSHDWRTAVEDVAWEPGDLLLLGSGAAGPAAHVFLGSAAAKILRHSPVPVMIVP 290
Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/39 (52%), Positives = 27/39 (70%), Gaps = 0/39 (0%)
Query 105 EVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPRR 143
++L+LGS +G A V +GS A ++L SPVPV I PRR
Sbjct 254 DLLLLGSGAAGPAAHVFLGSAAAKILRHSPVPVMIVPRR 292
>gi|337291876|ref|YP_004630897.1| hypothetical protein CULC22_02276 [Corynebacterium ulcerans BR-AD22]
gi|334700182|gb|AEG84978.1| hypothetical protein CULC22_02276 [Corynebacterium ulcerans BR-AD22]
Length=325
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/305 (30%), Positives = 148/305 (49%), Gaps = 21/305 (6%)
Query 1 VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
V ++V + G +AL A ++R + T R WP+ + ++ +Y+ W ++
Sbjct 21 VRVLVAWTPNSTGSAALDCAAWLSRTTNVEVRCVTTFLRPWPSRTGKKIGTKYKKWFKKE 80
Query 61 AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEE----------LEAEVLVLG 110
AAA +R L R E R + +VS D E A++++LG
Sbjct 81 AAACEEAVKRDLTRADIAKE-----RWNSTVSV-FCDGTNEAALLSDAAADFRADIVILG 134
Query 111 SFPSGRRARVLIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRR 170
S + + R L GSTAD LLHSSP P+A+TPR+ +TR++ Y+ + R
Sbjct 135 SDAAAPKGRFLAGSTADALLHSSPKPLALTPRKPNLSKRGVTRVNFAYTGDDTDSQALIR 194
Query 171 CGHLASRYGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSE 230
LA+ + VP+RV+ + G + P + + W +L++ R + V E
Sbjct 195 AATLAAAWNVPLRVLALSPSGFGVPPISDSVELPRDIALEWRENTLAVLDRAR-DTVHKE 253
Query 231 ----DVVLQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVP 286
+V + +G GW A+DA W+ G++L G++P G RVF+GS + +I+ Y VP
Sbjct 254 QPEVNVETHIGSGAGWQGAIDAVKWKKGDLLCFGSTPLGAFERVFIGSQATEILPYVSVP 313
Query 287 VLVLP 291
VL++P
Sbjct 314 VLMIP 318
>gi|300859458|ref|YP_003784441.1| hypothetical protein cpfrc_02041 [Corynebacterium pseudotuberculosis
FRC41]
gi|300686912|gb|ADK29834.1| hypothetical protein cpfrc_02041 [Corynebacterium pseudotuberculosis
FRC41]
gi|302207138|gb|ADL11480.1| Universal stress protein UspA [Corynebacterium pseudotuberculosis
C231]
gi|302331699|gb|ADL21893.1| Universal stress protein UspA [Corynebacterium pseudotuberculosis
1002]
gi|308277392|gb|ADO27291.1| Universal stress protein UspA-like nucleotide-binding protein
[Corynebacterium pseudotuberculosis I19]
gi|341825830|gb|AEK93351.1| Universal stress protein UspA [Corynebacterium pseudotuberculosis
PAT10]
Length=325
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 89/303 (30%), Positives = 151/303 (50%), Gaps = 17/303 (5%)
Query 1 VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
V ++V + G +AL A +R + T R WP+ + ++ +Y+ W ++
Sbjct 21 VRVLVAWTPNSTGSAALDCAAWFSRTTNVEVRCVTTFLRPWPSRTGNKLGTKYKKWFKKE 80
Query 61 AAASAREAQRYLRRLADGIEVSYHH--------RAHRSVSAGLLDVVEELEAEVLVLGSF 112
AAA +R L R +++ H R + +A L DV + A++++LGS
Sbjct 81 AAACEEAVKRDLIR----ADIAQEHWSSTVSVFRDGTNEAALLSDVAADFRADIVILGSD 136
Query 113 PSGRRARVLIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCG 172
+ + R L GSTAD LLHSSP P+A+TPR+ +TR++ Y+ + R
Sbjct 137 AAAPKGRFLAGSTADALLHSSPNPLALTPRKPSLSKRGVTRVNFAYTGDDTDNQALVRAA 196
Query 173 HLASRYGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSE-- 230
LA+ + VP+RV+ + G + P + + W +L++ R + V E
Sbjct 197 VLAAAWNVPLRVLALSPSGFGIPPIPDSVELPRDIALEWRENTLAVLDRAR-DTVHKEQP 255
Query 231 --DVVLQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVL 288
+V + +G GW A+DA W+ G++L G++P G RVF+GS + +I+ Y VPVL
Sbjct 256 EVNVETHIGSGAGWQGAIDAVKWKKGDLLCFGSTPLGAFERVFIGSQATEILPYVSVPVL 315
Query 289 VLP 291
++P
Sbjct 316 MIP 318
>gi|145296979|ref|YP_001139800.1| hypothetical protein cgR_2878 [Corynebacterium glutamicum R]
gi|140846899|dbj|BAF55898.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344045416|gb|EGV41087.1| hypothetical protein CgS9114_03750 [Corynebacterium glutamicum
S9114]
Length=313
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 84/288 (30%), Positives = 146/288 (51%), Gaps = 16/288 (5%)
Query 17 LHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQLAA-------ASAREAQ 69
A +AR ++ T R WP+ S++++ +Y W + L + +EA
Sbjct 29 FEFAAWLARTSDINVRGITTFIRPWPSSSISKLGGKYHKWYKNLDSYYRSRTIKGLKEAG 88
Query 70 RYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRL 129
+ D + V + ++ L EE EA++++LGS + + R L STAD L
Sbjct 89 LEKSQWDDDVSVFVDGPSESTL---LTHAAEEFEADLILLGSDATAPKGRFLASSTADAL 145
Query 130 LHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDV-VRRCGHLASRYGVPMRVITFA 188
LHSSPVP+ + PR + +TR++ ++ S + +R LA+ + VP+R++ F+
Sbjct 146 LHSSPVPLGLVPRGVKLSKKGVTRVNYAFTNESDDFEQGLRSSAELATNWNVPLRILAFS 205
Query 189 VRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVT----GNGWAQ 244
G T P L + W +L++ R +GV+++ L V + G GW+
Sbjct 206 PSGITSAPTSRSLDISTELSSEWRELTLAMLDRAR-DGVLTDHPNLSVSSETGSGWGWSG 264
Query 245 ALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG 292
A+DA W+ G++L +G+ ++RVF+GS + +IIR SPVP ++ PG
Sbjct 265 AIDALRWKKGDLLCMGSHRTDTLSRVFVGSETMEIIRNSPVPTIIYPG 312
>gi|19554183|ref|NP_602185.1| hypothetical protein NCgl2887 [Corynebacterium glutamicum ATCC
13032]
gi|21325762|dbj|BAC00383.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032]
Length=314
Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/288 (30%), Positives = 146/288 (51%), Gaps = 16/288 (5%)
Query 17 LHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQLAA-------ASAREAQ 69
A +AR ++ T R WP+ S++++ +Y W + L + +EA
Sbjct 30 FEFAAWLARTSDINVRGITTFIRPWPSSSISKLGGKYHKWYKNLDSYYRSRTIKGLKEAG 89
Query 70 RYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRL 129
+ D + V + ++ L EE EA++++LGS + + R L STAD L
Sbjct 90 VEKSQWDDDVSVFVDGPSESTL---LTHAAEEFEADLILLGSDATAPKGRFLASSTADAL 146
Query 130 LHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDV-VRRCGHLASRYGVPMRVITFA 188
LHSSPVP+ + PR + +TR++ ++ S + +R LA+ + VP+R++ F+
Sbjct 147 LHSSPVPLGLVPRGVKLSKKGVTRVNYAFTNESDDFEQGLRSSAELATNWNVPLRILAFS 206
Query 189 VRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVT----GNGWAQ 244
G T P L + W +L++ R +GV+++ L V + G GW+
Sbjct 207 PTGITSAPTSRSLDISTELSSEWRELTLAMLDRAR-DGVLTDHPNLSVSSETGSGWGWSG 265
Query 245 ALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG 292
A+DA W+ G++L +G+ ++RVF+GS + +IIR SPVP ++ PG
Sbjct 266 AIDALRWKKGDLLCMGSHRTDTLSRVFVGSETMEIIRNSPVPTIIYPG 313
>gi|62391837|ref|YP_227239.1| hypothetical protein cg3316 [Corynebacterium glutamicum ATCC
13032]
gi|41222984|emb|CAF18929.1| Universal stress protein UspA or related nucleotide-binding protein
[Corynebacterium glutamicum ATCC 13032]
Length=313
Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/288 (30%), Positives = 146/288 (51%), Gaps = 16/288 (5%)
Query 17 LHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQLAA-------ASAREAQ 69
A +AR ++ T R WP+ S++++ +Y W + L + +EA
Sbjct 29 FEFAAWLARTSDINVRGITTFIRPWPSSSISKLGGKYHKWYKNLDSYYRSRTIKGLKEAG 88
Query 70 RYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRL 129
+ D + V + ++ L EE EA++++LGS + + R L STAD L
Sbjct 89 VEKSQWDDDVSVFVDGPSESTL---LTHAAEEFEADLILLGSDATAPKGRFLASSTADAL 145
Query 130 LHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDV-VRRCGHLASRYGVPMRVITFA 188
LHSSPVP+ + PR + +TR++ ++ S + +R LA+ + VP+R++ F+
Sbjct 146 LHSSPVPLGLVPRGVKLSKKGVTRVNYAFTNESDDFEQGLRSSAELATNWNVPLRILAFS 205
Query 189 VRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVT----GNGWAQ 244
G T P L + W +L++ R +GV+++ L V + G GW+
Sbjct 206 PTGITSAPTSRSLDISTELSSEWRELTLAMLDRAR-DGVLTDHPNLSVSSETGSGWGWSG 264
Query 245 ALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG 292
A+DA W+ G++L +G+ ++RVF+GS + +IIR SPVP ++ PG
Sbjct 265 AIDALRWKKGDLLCMGSHRTDTLSRVFVGSETMEIIRNSPVPTIIYPG 312
>gi|334697847|gb|AEG82644.1| hypothetical protein CULC809_02120 [Corynebacterium ulcerans
809]
Length=325
Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 87/305 (29%), Positives = 149/305 (49%), Gaps = 21/305 (6%)
Query 1 VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
V ++V + G +AL A ++R + T R WP+ + ++ +Y+ W ++
Sbjct 21 VRVLVAWTPNSTGSAALDCAAWLSRTTNVEVRCVTTFLRPWPSRTGKKIGTKYKKWFKKE 80
Query 61 AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEE----------LEAEVLVLG 110
AAA ++ L R AD + ++ S + D E A++++LG
Sbjct 81 AAACEEAVKQDLTR-ADIAKEFWN-----STVSVFCDGTNEAALLSDAAADFRADIVILG 134
Query 111 SFPSGRRARVLIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRR 170
S + + R L GSTAD LLHSSP P+A+TPR+ +TR++ Y+ + R
Sbjct 135 SDAAAPKGRFLAGSTADALLHSSPKPLALTPRKPNLSKRGVTRVNFAYTGDDTDSQALIR 194
Query 171 CGHLASRYGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSE 230
LA+ + VP+RV+ + G + P + + W +L++ R + V E
Sbjct 195 AATLAAAWNVPLRVLALSPSGFGVLPISDSVELPRDIALEWRENTLAVLDRAR-DTVHKE 253
Query 231 ----DVVLQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVP 286
+V + +G GW A+DA W+ G++L G++P G RVF+GS + +I+ Y VP
Sbjct 254 QPEVNVETHIGSGAGWQGAIDAVKWKKGDLLCFGSTPLGAFERVFIGSQATEILPYVSVP 313
Query 287 VLVLP 291
VL++P
Sbjct 314 VLMIP 318
>gi|226366463|ref|YP_002784246.1| Usp family protein [Rhodococcus opacus B4]
gi|226244953|dbj|BAH55301.1| putative Usp family protein [Rhodococcus opacus B4]
Length=296
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 92/299 (31%), Positives = 155/299 (52%), Gaps = 17/299 (5%)
Query 1 VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
+TI+ G+ A + G + LHLA R+AR ++ A IV + WP +D EY +
Sbjct 1 MTIIAGFSASRQGTAPLHLAARIARWTGETVVAAAIVEQPWPGKD-EPIDREYLRYVTA- 58
Query 61 AAASAREAQRYLRRLADGI--EVSYHHRAHRSVS--AGLLDVVEELEAEVLVLGSFPSGR 116
EA R L + G+ HRS S GL+++ +A ++V+GS SG
Sbjct 59 ------EASRALDGVVGGLPGNPDIPTVVHRSTSIPTGLIELAAAHDATLVVVGSSSSGL 112
Query 117 RARVLIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLAS 176
RV +GS +RL+H++ VPVAI PR Y + RL+ Y + ++ +A+
Sbjct 113 LGRVALGSVTERLVHTAAVPVAIAPRGYPPLPGPIRRLTAAYGGEADVNGLIAATAAMAA 172
Query 177 RYGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARE----LLEKLRINGVVSEDV 232
R+ V +R+++F VR + + + E V+ W + + L+ +R + DV
Sbjct 173 RWPVTLRIVSFTVRPVSRFGGAIEQSTEDLVVRQWTRRTTDDIARQLDAVRAR-IPVPDV 231
Query 233 VLQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP 291
+++ +G W A++A W+ ++L LG+ G A VFLGS + KI+R++PVPV+++P
Sbjct 232 DVEIGSGTDWRGAVEAVSWEPDDMLVLGSGAAGPAAHVFLGSAASKILRHAPVPVMIVP 290
Score = 38.9 bits (89), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/49 (43%), Positives = 30/49 (62%), Gaps = 0/49 (0%)
Query 94 GLLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPR 142
G ++ V ++LVLGS +G A V +GS A ++L +PVPV I PR
Sbjct 243 GAVEAVSWEPDDMLVLGSGAAGPAAHVFLGSAASKILRHAPVPVMIVPR 291
>gi|172041671|ref|YP_001801385.1| putative universal stress protein [Corynebacterium urealyticum
DSM 7109]
gi|171852975|emb|CAQ05951.1| putative universal stress protein [Corynebacterium urealyticum
DSM 7109]
Length=408
Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/230 (35%), Positives = 118/230 (52%), Gaps = 28/230 (12%)
Query 82 SYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITP 141
S H R + AG EE A+V++LGS R +GSTAD LLH SP+P+ + P
Sbjct 182 SDHSETSRLIEAG-----EEFGADVILLGSQADSPDGRYRMGSTADALLHCSPLPLMLVP 236
Query 142 RRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGVPMRVITFAVRGRTMYPPEVGL 201
R TRL+C Y T S +R LA R+ VP+R++ F+ G ++ P +V
Sbjct 237 RNLDFSKAGPTRLNCAYVDTEQSQQALRHASDLARRWEVPLRLVAFSPAGVSLDPTQVAF 296
Query 202 ------------------HAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGNG-- 241
+A A + EAW QA+ELLE+ R +S L+V T G
Sbjct 297 GDAVDAAGAGSAGAVGSNNAAAPLAEAWQVQAKELLERGRKRA-LSRHPELEVTTKTGIG 355
Query 242 --WAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLV 289
W +A+ A W+ G+++ +G+S GD RVF+G + +I+R+ PVPV +
Sbjct 356 ASWEEAVGAIKWRKGDLMVMGSSVLGDFNRVFIGPSTNQILRHVPVPVFL 405
>gi|38234832|ref|NP_940599.1| hypothetical protein DIP2297 [Corynebacterium diphtheriae NCTC
13129]
gi|38201096|emb|CAE50820.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
Length=321
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 84/301 (28%), Positives = 150/301 (50%), Gaps = 13/301 (4%)
Query 1 VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
V ++V + G A+ A +AR ++ T R WP+ S ++ ++Y+ W ++
Sbjct 13 VRVLVAWNPSSHGAEAIECAAWLARTTNVTVQCVTAFLRPWPSSSGNKLGSKYKKWFKKE 72
Query 61 AAASAREAQRYLRR-------LADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFP 113
A A + R AD + V +A L + + A++++LGS
Sbjct 73 AFACEDAVKAAFSRAEIPTAMWADTVSVFCDGTNE---AALLSEAAHKFGADIVLLGSEA 129
Query 114 SGRRARVLIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGH 173
+ + R L GSTAD LLHSSP P+ +TPR+ + +TR++ Y+ + + R
Sbjct 130 AAPKGRFLAGSTADALLHSSPQPLGLTPRKPKLSKRGVTRVNFAYTGDATDNTSLIRTAR 189
Query 174 LASRYGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRIN-GVVSEDV 232
LA+ + VP+RV+ + G + P L + W +L++ R DV
Sbjct 190 LAAAWDVPLRVLALSPEGFGVPPISDTLELPEDLALEWRENTFAVLDRSRDTVHKAHPDV 249
Query 233 VL--QVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVL 290
++ ++ +GNGW+ A+++ W+ G++L G++P G RVF+GS + +I+ Y VPVL++
Sbjct 250 IVETEIGSGNGWSGAIESLKWKKGDLLCFGSTPLGAFERVFIGSQATEILPYVSVPVLMI 309
Query 291 P 291
P
Sbjct 310 P 310
>gi|340795956|ref|YP_004761419.1| hypothetical protein CVAR_3004 [Corynebacterium variabile DSM
44702]
gi|340535866|gb|AEK38346.1| hypothetical protein CVAR_3004 [Corynebacterium variabile DSM
44702]
Length=322
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 90/287 (32%), Positives = 137/287 (48%), Gaps = 21/287 (7%)
Query 23 VARMHKTSLTVATIVRRHWPTPSLARVDAEYEL------WSEQLAAASAREAQRYLRRL- 75
++R S+ ++ R WP S A+ ++ W+ AA +A+ LR
Sbjct 34 MSRSGPLSIRPVCVIPRIWPESSGGGGAADPDILDRVTDWAHAETAACLEDARTALRDAG 93
Query 76 ---------ADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARVLIGSTA 126
A G + + S + L+ + AEV+++GS G+TA
Sbjct 94 VPEGYIDTGASGSDGTDAPLVSHSETTALITAATDFGAEVILIGSRDDAPEGHFRAGATA 153
Query 127 DRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGVPMRVIT 186
D LLH SP+PV + P + +TR+SC Y T S +R LA+R VP+R++
Sbjct 154 DALLHCSPLPVLVAPHLPTLSSHGVTRVSCAYVDTEQSQQALRHAADLATRCSVPLRLVA 213
Query 187 FAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTGNG----W 242
F+ G TMYP V L A LE W QA +L++ R N + L+V TG G W
Sbjct 214 FSPVGATMYPTRVPLPDSADALERWRTQAEAILDRGR-NRALERHPGLEVQTGVGVGDDW 272
Query 243 AQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLV 289
A A+ W+ G++L +G+S G RVF+G + +I+R+SP PV V
Sbjct 273 AGAIGDLRWKKGDLLVVGSSVLGSFNRVFIGPSTNQILRHSPAPVFV 319
>gi|118467904|ref|YP_889712.1| universal stress protein family protein [Mycobacterium smegmatis
str. MC2 155]
gi|118169191|gb|ABK70087.1| universal stress protein family protein [Mycobacterium smegmatis
str. MC2 155]
Length=298
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 89/298 (30%), Positives = 151/298 (51%), Gaps = 11/298 (3%)
Query 1 VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
+TI+ + A + L+LA ++AR ++ A ++ R WP P V+ EY + +
Sbjct 1 MTILAAFSASGHARAPLYLAAQIARTTGDNVLAAAVIERPWP-PRGDPVEKEY---LDYV 56
Query 61 AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV 120
+A L IE S SV GL+++ A+++V+GS SG RV
Sbjct 57 GRQAAHALDSAAAVLPATIEFSTLVHESTSVPKGLMELAASHRAQIVVVGSSSSGLLGRV 116
Query 121 LIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGV 180
+GS +RL+H++ VPVAI PR Y + ++ RL+ Y + ++ LA +
Sbjct 117 ALGSVTERLVHTAQVPVAIAPRGYAQGSGKIRRLTAAYGGEADVNGLIPAAAQLAKDWST 176
Query 181 PMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARE----LLEKLRI---NGVVSEDVV 233
+R+++F VR + + AE V++ W+ + + LL+ +R N +DV
Sbjct 177 LLRIVSFTVRNVAAFSGRIESAAEDLVVQQWSRRTHDDIVRLLDSVRADVRNDGPLDDVD 236
Query 234 LQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP 291
+ V TG W A+ + W+ G++L LG+ A+VFLGS + +I+R PVPV+V+P
Sbjct 237 VVVGTGADWNTAVQSVPWEAGDMLLLGSGAAAQSAQVFLGSAAARILRNCPVPVMVVP 294
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/38 (45%), Positives = 27/38 (72%), Gaps = 0/38 (0%)
Query 105 EVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPR 142
++L+LGS + + A+V +GS A R+L + PVPV + PR
Sbjct 258 DMLLLGSGAAAQSAQVFLGSAAARILRNCPVPVMVVPR 295
>gi|119961252|ref|YP_945874.1| universal stress family domain-containing protein [Arthrobacter
aurescens TC1]
gi|119948111|gb|ABM07022.1| putative universal stress family domain protein [Arthrobacter
aurescens TC1]
Length=298
Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 94/296 (32%), Positives = 147/296 (50%), Gaps = 17/296 (5%)
Query 4 VVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEY-ELWSEQLAA 62
VVGY A G A+HLAV +AR H SL + ++ P ++ +A Y ++ +EQ
Sbjct 4 VVGYTANARGHDAVHLAVALARNHDVSLDLVLVIPEDSPFNAVYPPEAGYNDILNEQ--- 60
Query 63 ASAREAQRYLRRLADGIEVSYHHRAH----RSVSAGLLDVVEELEAEVLVLGSFPSGRRA 118
AQR+L + RAH S + L+D E++A LV+G+ G
Sbjct 61 -----AQRWLDEGLALVPADVTARAHIRRGDSEARTLIDAAVEMDAAALVIGATNDGLFK 115
Query 119 RVLIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRY 178
R IGS A LLHSSPVPVA+ P YR T+ +TRLSCG+ G+ +++ A
Sbjct 116 RFTIGSVASSLLHSSPVPVALAPHGYR-RTEPITRLSCGFGTRPGADELLDVAVESARDR 174
Query 179 GVPMRVITFAVRGRTMYPPEVG---LHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQ 235
G+P+R+++ P + +HA + ++ + G + + +
Sbjct 175 GLPLRLVSLLALDGGNSPQLLDAAWMHAADRLAAVGSSVDADGSADATAAGSLQGEPEIV 234
Query 236 VVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP 291
V G +A+D DW+DGEIL +G+S FLG+ + +I+R PVP++V+P
Sbjct 235 VAQGRKIEEAVDRLDWEDGEILLIGSSRLAQQRATFLGTTANRILRALPVPMIVVP 290
Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/42 (36%), Positives = 28/42 (67%), Gaps = 0/42 (0%)
Query 103 EAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPRRY 144
+ E+L++GS ++ +G+TA+R+L + PVP+ + PR Y
Sbjct 252 DGEILLIGSSRLAQQRATFLGTTANRILRALPVPMIVVPRDY 293
>gi|25029383|ref|NP_739437.1| hypothetical protein CE2827 [Corynebacterium efficiens YS-314]
gi|259508436|ref|ZP_05751336.1| universal stress protein [Corynebacterium efficiens YS-314]
gi|23494671|dbj|BAC19637.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
gi|259163990|gb|EEW48544.1| universal stress protein [Corynebacterium efficiens YS-314]
Length=314
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/294 (29%), Positives = 152/294 (52%), Gaps = 13/294 (4%)
Query 10 GKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQLAAASAREAQ 69
G+ + A ++R + T R WP+ S++++ +Y+ W + L +
Sbjct 22 GEQNAAVFEFAAWLSRTTDIRVRGVTTFTRPWPSSSVSKLGGKYKKWFQNLESRYETRTI 81
Query 70 RYLRRLADGIEVSYHHRAHRSVSAG------LLDVVEELEAEVLVLGSFPSGRRARVLIG 123
+ L+R AD ++ S+ + + G L EE A++++LGS + + R L G
Sbjct 82 KALKR-AD-VDKSHWDATVSTFADGPSESVLLTHAAEEFNADLILLGSDATAPKGRFLAG 139
Query 124 STADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDV--VRRCGHLASRYGVP 181
STAD LLHSSPVP+ + PR + +TR++ +++ +G+ + LAS +GVP
Sbjct 140 STADALLHSSPVPLGLVPRGVKLSKKGVTRVNYAFTSENGNAHDRGLMYAAELASDWGVP 199
Query 182 MRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLR--INGVVSEDVVL-QVVT 238
+R+++F+ G L + + W + +L+ R + + S VV ++ +
Sbjct 200 LRILSFSSAGIADGSASDSLDLPSLLSSKWREHSLAMLDSARDEVLSIHSSLVVTSEIGS 259
Query 239 GNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLPG 292
G GW A++A W+ G++L LG+ ++RVF+G+ + +IIR SPVP ++ PG
Sbjct 260 GWGWNGAINALKWKKGDLLCLGSRRADTISRVFVGTETMEIIRNSPVPTIIYPG 313
>gi|296118488|ref|ZP_06837066.1| putative universal stress protein [Corynebacterium ammoniagenes
DSM 20306]
gi|295968387|gb|EFG81634.1| putative universal stress protein [Corynebacterium ammoniagenes
DSM 20306]
Length=314
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 145/300 (49%), Gaps = 13/300 (4%)
Query 3 IVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQLAA 62
I++ + G + A +AR + V + + W S+ ++ +Y W Q A
Sbjct 12 ILISWTPASGGTEPIEYAAWLARTTPVEVRVLSAFVQPWHEVSMQKLGGKYHKWFAQEAK 71
Query 63 ASAREAQRYLRRLADGIEVSYHHRAHRSVSAG------LLDVVEELEAEVLVLGSFPSGR 116
A + + L+ A GI ++ + + G L EE +A++++LG
Sbjct 72 ACKQAVKNTLQ--AAGIPREQWNKDYSVLMDGPSKPQLLTQAAEEFDADLVLLGPNQGAA 129
Query 117 RARVLIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDV--VRRCGHL 174
+ R L GSTAD LLH SP+PV ++PR + +TRL+ + G DV + L
Sbjct 130 KGRFLAGSTADSLLHYSPIPVGLSPRAAKLSKHGVTRLNFALTEEQGIDDVPALIDAAFL 189
Query 175 ASRYGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQA--RELLEKLRINGVVSE-D 231
AS + VP+R+I F+ G P L + W + R + + R+ + +
Sbjct 190 ASTWNVPLRIIVFSSHGLVNAPINDNLDVALELTSQWREHSLGRLDIARERVGERFPDLE 249
Query 232 VVLQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP 291
+ ++ +G GW A+D+ W+ G+++ LG+SP G + RVF+GS + +++ + VP++V P
Sbjct 250 IRTEIGSGKGWRAAVDSLKWKKGDLICLGSSPMGALERVFIGSRATELLPHLSVPIIVWP 309
>gi|227834268|ref|YP_002835975.1| universal stress protein [Corynebacterium aurimucosum ATCC 700975]
gi|262183001|ref|ZP_06042422.1| universal stress protein [Corynebacterium aurimucosum ATCC 700975]
gi|227455284|gb|ACP34037.1| universal stress protein [Corynebacterium aurimucosum ATCC 700975]
Length=327
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/301 (28%), Positives = 149/301 (50%), Gaps = 17/301 (5%)
Query 3 IVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQLAA 62
++V + G A+ A +AR + V + + + SL+++ Y+ W ++ A
Sbjct 24 VLVSWSPSSTGTEAIEFAAWLARSTSVRIRVVSTISQPLTVTSLSKLSGSYKKWFKKERA 83
Query 63 ASAREAQRYLRRLADGIEVSYHHRAHRSVSAG------LLDVVEELEAEVLVLGSFPSGR 116
R ++ L A G++ + + AG L E+ +A V++LG+ S
Sbjct 84 TCERAVKQALH--AAGVDKDQLDKNVSVLLAGPSRPQLLEQAAEDFKASVILLGANQSAP 141
Query 117 RARVLIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVD-VVRRCGHLA 175
+ R GSTAD LLH SP+PV + PR + +TR++ ++ + D + +A
Sbjct 142 KGRFFSGSTADALLHYSPLPVGLIPRGIKLSKHGVTRINFAFTDLGSADDPALLHAACIA 201
Query 176 SRYGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSE----- 230
R G+P+R++ F+ +G P E S W + LL+ R + +++
Sbjct 202 QRGGIPLRILAFSAKGLVDVPLEYS-PTFPSDAPNWREHSLSLLD--RAHDFIADAYPEL 258
Query 231 DVVLQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVL 290
V + +G+GW+ A+D+ W+ G++L LG+SP G + RVF+GS + +++ + VPVLV
Sbjct 259 SVTTAIGSGHGWSGAVDSLKWKKGDLLCLGSSPMGPIERVFIGSTATELLPHLGVPVLVC 318
Query 291 P 291
P
Sbjct 319 P 319
Score = 39.3 bits (90), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/52 (43%), Positives = 30/52 (58%), Gaps = 0/52 (0%)
Query 93 AGLLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPRRY 144
+G +D ++ + ++L LGS P G RV IGSTA LL VPV + P Y
Sbjct 271 SGAVDSLKWKKGDLLCLGSSPMGPIERVFIGSTATELLPHLGVPVLVCPSTY 322
>gi|227506307|ref|ZP_03936356.1| universal stress protein [Corynebacterium striatum ATCC 6940]
gi|227197119|gb|EEI77167.1| universal stress protein [Corynebacterium striatum ATCC 6940]
Length=328
Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 79/303 (27%), Positives = 147/303 (49%), Gaps = 16/303 (5%)
Query 1 VTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
V ++V + G A+ A +AR K + V + + T + +Y+ W ++
Sbjct 22 VRLLVSWSPSSTGTEAIEYAAWLARSTKVCIRVISTISVPRATTVFTKHGGKYKKWFKKE 81
Query 61 AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAG------LLDVVEELEAEVLVLGSFPS 114
A + L+ A G++ S + AG L ++ E A+ ++LG+ S
Sbjct 82 QAECEQSVLAALK--AAGVDNSQLDERPSVLLAGPSRPQLLTEMATEFCADAILLGANQS 139
Query 115 GRRARVLIGSTADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVD-VVRRCGH 173
+ + GSTAD LLH SP+P+ +TPR + +TR++ ++ S D +
Sbjct 140 APKGKFFAGSTADALLHFSPIPLGLTPRDIKLSKHGVTRINFAFTERGDSEDPALLHAAR 199
Query 174 LASRYGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSE--- 230
LA+R+ +P+R++ F G P + + + + W +L+ R +V
Sbjct 200 LANRWKLPLRIVAFNAEGLIDAPLHDSVDIASKLTKGWHEHTLAMLD--RAQDIVDHHYP 257
Query 231 --DVVLQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVL 288
++ + TG+GWA A+D+ W+ G+I+ +G+SP G + RVF+GS + +++ + VPV+
Sbjct 258 GLEISTDIGTGHGWAGAVDSLKWKKGDIMCMGSSPMGPIERVFIGSAATELLPHIRVPVM 317
Query 289 VLP 291
V P
Sbjct 318 VRP 320
>gi|116671639|ref|YP_832572.1| UspA domain-containing protein [Arthrobacter sp. FB24]
gi|116611748|gb|ABK04472.1| UspA domain protein [Arthrobacter sp. FB24]
Length=289
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/292 (31%), Positives = 147/292 (51%), Gaps = 22/292 (7%)
Query 4 VVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQLAAA 63
VVGY + G A+ LA +A+ L + +V R V + ++L E+
Sbjct 4 VVGYTPNERGADAVALASALAKAQGAQLDLVYVVDRGLHVAH--EVASGHDLAREKAVQD 61
Query 64 SAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARVLIG 123
+ RE L + + V +H R S +AGL++ ++EA ++V+G+ +G R +G
Sbjct 62 AQREG---LGLVPADVPVEFHVRHAESFAAGLIEAAVDIEAGLIVVGAASNGLFKRHTVG 118
Query 124 STADRLLHSSPVPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGVPMR 183
S A+ LLH+SPVPVA+ PR YR T+ ++RL+ G+ + A R GVP+R
Sbjct 119 SVANALLHASPVPVALAPRGYR-RTEAISRLTLAVGQRPGADAAIDVAIGSAERRGVPLR 177
Query 184 VITFAVRGRTMYPPEV----GLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVVTG 239
+++ P EV +HA + EA +R L E V ++V G
Sbjct 178 MVSLVELDAEGDPGEVVNAAHIHANTVLTEA----SRRLPE--------GHKVTVEVAHG 225
Query 240 NGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP 291
+ +D +W DGEIL +G+S + ++F+GS + K++R PVP++V+P
Sbjct 226 RTIEECIDDLEWDDGEILIVGSSRLAERNKLFIGSTANKVLRALPVPMVVIP 277
Lambda K H
0.321 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 480200259616
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40