BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2328

Length=382
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15841831|ref|NP_336868.1|  PE family protein [Mycobacterium tu...   714    0.0   
gi|31793511|ref|NP_856004.1|  PE family protein [Mycobacterium bo...   713    0.0   
gi|253798599|ref|YP_003031600.1|  PE family protein [Mycobacteriu...   712    0.0   
gi|298525812|ref|ZP_07013221.1|  PE family protein [Mycobacterium...   712    0.0   
gi|289745606|ref|ZP_06504984.1|  PE family protein [Mycobacterium...   710    0.0   
gi|308375850|ref|ZP_07445311.2|  PE family protein [Mycobacterium...   639    0.0   
gi|167969877|ref|ZP_02552154.1|  PE family protein [Mycobacterium...   621    5e-176
gi|183982975|ref|YP_001851266.1|  PE-PGRS family protein [Mycobac...   130    5e-28 
gi|183981460|ref|YP_001849751.1|  PE-PGRS family protein [Mycobac...   117    3e-24 
gi|240173029|ref|ZP_04751687.1|  PE-PGRS family protein [Mycobact...   110    4e-22 
gi|240170011|ref|ZP_04748670.1|  PE-PGRS family protein [Mycobact...   108    1e-21 
gi|183982472|ref|YP_001850763.1|  PE-PGRS family protein [Mycobac...   108    2e-21 
gi|183982114|ref|YP_001850405.1|  PE-PGRS family protein [Mycobac...   105    1e-20 
gi|240168031|ref|ZP_04746690.1|  PE family protein [Mycobacterium...   101    2e-19 
gi|183982664|ref|YP_001850955.1|  PE-PGRS family protein, PE_PGRS...   100    3e-19 
gi|306780127|ref|ZP_07418464.1|  PE family protein [Mycobacterium...  99.8    8e-19 
gi|289447720|ref|ZP_06437464.1|  PE-PGRS family protein [Mycobact...  98.6    2e-18 
gi|289745374|ref|ZP_06504752.1|  PE family protein [Mycobacterium...  98.6    2e-18 
gi|289443603|ref|ZP_06433347.1|  PE PGRS family protein [Mycobact...  98.2    2e-18 
gi|340627111|ref|YP_004745563.1|  PE-PGRS family protein [Mycobac...  98.2    2e-18 
gi|15841589|ref|NP_336626.1|  PE family-related protein [Mycobact...  98.2    2e-18 
gi|306797954|ref|ZP_07436256.1|  PE family protein [Mycobacterium...  98.2    2e-18 
gi|340626466|ref|YP_004744918.1|  PE-PGRS family protein [Mycobac...  97.8    3e-18 
gi|289574131|ref|ZP_06454358.1|  predicted protein [Mycobacterium...  97.4    4e-18 
gi|289574779|ref|ZP_06455006.1|  LOW QUALITY PROTEIN: PE-PGRS fam...  97.1    4e-18 
gi|31793670|ref|NP_856163.1|  hypothetical protein Mb2518c [Mycob...  95.9    1e-17 
gi|313659421|ref|ZP_07816301.1|  PE-PGRS family protein [Mycobact...  94.7    2e-17 
gi|297635096|ref|ZP_06952876.1|  PE-PGRS family protein [Mycobact...  94.7    2e-17 
gi|297732087|ref|ZP_06961205.1|  PE-PGRS family protein [Mycobact...  94.7    2e-17 
gi|183980779|ref|YP_001849070.1|  PE-PGRS family protein [Mycobac...  94.7    2e-17 
gi|121638372|ref|YP_978596.1|  PE-PGRS family protein [Mycobacter...  94.4    3e-17 
gi|340627504|ref|YP_004745956.1|  PE-PGRS family protein [Mycobac...  94.4    3e-17 
gi|289553720|ref|ZP_06442930.1|  LOW QUALITY PROTEIN: predicted p...  94.4    3e-17 
gi|183982475|ref|YP_001850766.1|  PE-PGRS family protein [Mycobac...  94.4    3e-17 
gi|344220317|gb|AEN00948.1|  PE-PGRS family protein [Mycobacteriu...  94.0    4e-17 
gi|339632516|ref|YP_004724158.1|  PE-PGRS family protein [Mycobac...  94.0    4e-17 
gi|253798432|ref|YP_003031433.1|  hypothetical protein TBMG_04024...  94.0    4e-17 
gi|57116996|ref|YP_177887.1|  PE-PGRS family protein [Mycobacteri...  94.0    4e-17 
gi|15842017|ref|NP_337054.1|  PE_PGRS family protein [Mycobacteri...  93.6    5e-17 
gi|297634017|ref|ZP_06951797.1|  PE-PGRS family protein [Mycobact...  93.6    5e-17 
gi|183980507|ref|YP_001848798.1|  PE-PGRS family protein [Mycobac...  93.6    6e-17 
gi|253799499|ref|YP_003032500.1|  PE-PGRS family protein [Mycobac...  93.2    6e-17 
gi|253799501|ref|YP_003032502.1|  hypothetical protein TBMG_02531...  92.8    9e-17 
gi|297634014|ref|ZP_06951794.1|  PE-PGRS family protein [Mycobact...  92.4    1e-16 
gi|148823688|ref|YP_001288442.1|  PE-PGRS family protein [Mycobac...  91.7    2e-16 
gi|183980330|ref|YP_001848621.1|  PE-PGRS family protein, PE_PGRS...  90.9    3e-16 
gi|339298994|gb|AEJ51104.1|  PE-PGRS family protein [Mycobacteriu...  90.9    3e-16 
gi|294994403|ref|ZP_06800094.1|  PE-PGRS family protein [Mycobact...  90.1    6e-16 
gi|297636271|ref|ZP_06954051.1|  PE-PGRS family protein [Mycobact...  89.4    9e-16 
gi|339633594|ref|YP_004725236.1|  PE-PGRS family protein [Mycobac...  89.4    1e-15 


>gi|15841831|ref|NP_336868.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|13882095|gb|AAK46682.1| PE family protein [Mycobacterium tuberculosis CDC1551]
Length=417

 Score =  714 bits (1844),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 382/382 (100%), Positives = 382/382 (100%), Gaps = 0/382 (0%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR
Sbjct  36   MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  95

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHPSAAESV  120
            QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHPSAAESV
Sbjct  96   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHPSAAESV  155

Query  121  QNSAPTLGGGHSTVTAGLAAQAGRAVATVEQQAAAAVAPLPSAGAGLAQVVNGVVTAGQG  180
            QNSAPTLGGGHSTVTAGLAAQAGRAVATVEQQAAAAVAPLPSAGAGLAQVVNGVVTAGQG
Sbjct  156  QNSAPTLGGGHSTVTAGLAAQAGRAVATVEQQAAAAVAPLPSAGAGLAQVVNGVVTAGQG  215

Query  181  SAAKLATALQSAAPWLAKSGGEFIVAGQSALTGVALLQPAVVGVVQAGGTFLTAGTSAAT  240
            SAAKLATALQSAAPWLAKSGGEFIVAGQSALTGVALLQPAVVGVVQAGGTFLTAGTSAAT
Sbjct  216  SAAKLATALQSAAPWLAKSGGEFIVAGQSALTGVALLQPAVVGVVQAGGTFLTAGTSAAT  275

Query  241  GLGLLTLAGVEFSQGVGNLALASGTAATGLGLLGSAGVQLFSPAFLLAVPTALGGVGSLA  300
            GLGLLTLAGVEFSQGVGNLALASGTAATGLGLLGSAGVQLFSPAFLLAVPTALGGVGSLA
Sbjct  276  GLGLLTLAGVEFSQGVGNLALASGTAATGLGLLGSAGVQLFSPAFLLAVPTALGGVGSLA  335

Query  301  IAVVQLVQGVQHLSLVVPNVVAGIAALQTAGAQFAQGVNHTMLAAQLGAPGIAVLQTAGG  360
            IAVVQLVQGVQHLSLVVPNVVAGIAALQTAGAQFAQGVNHTMLAAQLGAPGIAVLQTAGG
Sbjct  336  IAVVQLVQGVQHLSLVVPNVVAGIAALQTAGAQFAQGVNHTMLAAQLGAPGIAVLQTAGG  395

Query  361  HFAQGIGHLTTAGNAAVTVLIS  382
            HFAQGIGHLTTAGNAAVTVLIS
Sbjct  396  HFAQGIGHLTTAGNAAVTVLIS  417


>gi|31793511|ref|NP_856004.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|57116969|ref|YP_177867.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 gi|121638214|ref|YP_978438.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 59 more sequence titles
 
gi|148662155|ref|YP_001283678.1| PE family protein [Mycobacterium tuberculosis H37Ra]
 gi|148823528|ref|YP_001288282.1| PE family protein [Mycobacterium tuberculosis F11]
 gi|224990708|ref|YP_002645395.1| PE family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|254232472|ref|ZP_04925799.1| PE family protein [Mycobacterium tuberculosis C]
 gi|254365108|ref|ZP_04981154.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|254551373|ref|ZP_05141820.1| PE family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|289443844|ref|ZP_06433588.1| PE family protein [Mycobacterium tuberculosis T46]
 gi|289447968|ref|ZP_06437712.1| PE family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289570460|ref|ZP_06450687.1| PE family protein [Mycobacterium tuberculosis T17]
 gi|289575019|ref|ZP_06455246.1| PE family protein [Mycobacterium tuberculosis K85]
 gi|289750933|ref|ZP_06510311.1| PE family protein [Mycobacterium tuberculosis T92]
 gi|289754432|ref|ZP_06513810.1| PE family protein [Mycobacterium tuberculosis EAS054]
 gi|289762494|ref|ZP_06521872.1| PE family protein [Mycobacterium tuberculosis GM 1503]
 gi|306776586|ref|ZP_07414923.1| PE family protein [Mycobacterium tuberculosis SUMu001]
 gi|306780365|ref|ZP_07418702.1| PE family protein [Mycobacterium tuberculosis SUMu002]
 gi|306785110|ref|ZP_07423432.1| PE family protein [Mycobacterium tuberculosis SUMu003]
 gi|306789475|ref|ZP_07427797.1| PE family protein [Mycobacterium tuberculosis SUMu004]
 gi|306793799|ref|ZP_07432101.1| PE family protein [Mycobacterium tuberculosis SUMu005]
 gi|306798192|ref|ZP_07436494.1| PE family protein [Mycobacterium tuberculosis SUMu006]
 gi|306804070|ref|ZP_07440738.1| PE family protein [Mycobacterium tuberculosis SUMu008]
 gi|306968470|ref|ZP_07481131.1| PE family protein [Mycobacterium tuberculosis SUMu009]
 gi|306972696|ref|ZP_07485357.1| PE family protein [Mycobacterium tuberculosis SUMu010]
 gi|307080406|ref|ZP_07489576.1| PE family protein [Mycobacterium tuberculosis SUMu011]
 gi|307084997|ref|ZP_07494110.1| PE family protein [Mycobacterium tuberculosis SUMu012]
 gi|339632353|ref|YP_004723995.1| PE family protein [Mycobacterium africanum GM041182]
 gi|340627338|ref|YP_004745790.1| PE family protein [Mycobacterium canettii CIPT 140010059]
 gi|61229783|sp|P0A684.1|PE23_MYCTU RecName: Full=Uncharacterized PE family protein PE23
 gi|61229785|sp|P0A685.1|PE23_MYCBO RecName: Full=Uncharacterized PE family protein PE23
 gi|31619104|emb|CAD97216.1| PE FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
 gi|41353683|emb|CAE55472.1| PE FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|121493862|emb|CAL72337.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124601531|gb|EAY60541.1| PE family protein [Mycobacterium tuberculosis C]
 gi|134150622|gb|EBA42667.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|148506307|gb|ABQ74116.1| PE family protein [Mycobacterium tuberculosis H37Ra]
 gi|148722055|gb|ABR06680.1| PE family protein [Mycobacterium tuberculosis F11]
 gi|224773821|dbj|BAH26627.1| PE family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289416763|gb|EFD14003.1| PE family protein [Mycobacterium tuberculosis T46]
 gi|289420926|gb|EFD18127.1| PE family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289539450|gb|EFD44028.1| PE family protein [Mycobacterium tuberculosis K85]
 gi|289544214|gb|EFD47862.1| PE family protein [Mycobacterium tuberculosis T17]
 gi|289691520|gb|EFD58949.1| PE family protein [Mycobacterium tuberculosis T92]
 gi|289695019|gb|EFD62448.1| PE family protein [Mycobacterium tuberculosis EAS054]
 gi|289710000|gb|EFD74016.1| PE family protein [Mycobacterium tuberculosis GM 1503]
 gi|308215049|gb|EFO74448.1| PE family protein [Mycobacterium tuberculosis SUMu001]
 gi|308326798|gb|EFP15649.1| PE family protein [Mycobacterium tuberculosis SUMu002]
 gi|308330317|gb|EFP19168.1| PE family protein [Mycobacterium tuberculosis SUMu003]
 gi|308334150|gb|EFP23001.1| PE family protein [Mycobacterium tuberculosis SUMu004]
 gi|308337955|gb|EFP26806.1| PE family protein [Mycobacterium tuberculosis SUMu005]
 gi|308341560|gb|EFP30411.1| PE family protein [Mycobacterium tuberculosis SUMu006]
 gi|308349435|gb|EFP38286.1| PE family protein [Mycobacterium tuberculosis SUMu008]
 gi|308353987|gb|EFP42838.1| PE family protein [Mycobacterium tuberculosis SUMu009]
 gi|308357928|gb|EFP46779.1| PE family protein [Mycobacterium tuberculosis SUMu010]
 gi|308361865|gb|EFP50716.1| PE family protein [Mycobacterium tuberculosis SUMu011]
 gi|308365448|gb|EFP54299.1| PE family protein [Mycobacterium tuberculosis SUMu012]
 gi|323719236|gb|EGB28381.1| PE family protein [Mycobacterium tuberculosis CDC1551A]
 gi|339331709|emb|CCC27410.1| PE family protein [Mycobacterium africanum GM041182]
 gi|340005528|emb|CCC44690.1| PE family protein [Mycobacterium canettii CIPT 140010059]
 gi|341602252|emb|CCC64926.1| PE family protein [Mycobacterium bovis BCG str. Moreau RDJ]
 gi|344220154|gb|AEN00785.1| PE family protein [Mycobacterium tuberculosis CTRI-2]
Length=382

 Score =  713 bits (1840),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 382/382 (100%), Positives = 382/382 (100%), Gaps = 0/382 (0%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR
Sbjct  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHPSAAESV  120
            QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHPSAAESV
Sbjct  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHPSAAESV  120

Query  121  QNSAPTLGGGHSTVTAGLAAQAGRAVATVEQQAAAAVAPLPSAGAGLAQVVNGVVTAGQG  180
            QNSAPTLGGGHSTVTAGLAAQAGRAVATVEQQAAAAVAPLPSAGAGLAQVVNGVVTAGQG
Sbjct  121  QNSAPTLGGGHSTVTAGLAAQAGRAVATVEQQAAAAVAPLPSAGAGLAQVVNGVVTAGQG  180

Query  181  SAAKLATALQSAAPWLAKSGGEFIVAGQSALTGVALLQPAVVGVVQAGGTFLTAGTSAAT  240
            SAAKLATALQSAAPWLAKSGGEFIVAGQSALTGVALLQPAVVGVVQAGGTFLTAGTSAAT
Sbjct  181  SAAKLATALQSAAPWLAKSGGEFIVAGQSALTGVALLQPAVVGVVQAGGTFLTAGTSAAT  240

Query  241  GLGLLTLAGVEFSQGVGNLALASGTAATGLGLLGSAGVQLFSPAFLLAVPTALGGVGSLA  300
            GLGLLTLAGVEFSQGVGNLALASGTAATGLGLLGSAGVQLFSPAFLLAVPTALGGVGSLA
Sbjct  241  GLGLLTLAGVEFSQGVGNLALASGTAATGLGLLGSAGVQLFSPAFLLAVPTALGGVGSLA  300

Query  301  IAVVQLVQGVQHLSLVVPNVVAGIAALQTAGAQFAQGVNHTMLAAQLGAPGIAVLQTAGG  360
            IAVVQLVQGVQHLSLVVPNVVAGIAALQTAGAQFAQGVNHTMLAAQLGAPGIAVLQTAGG
Sbjct  301  IAVVQLVQGVQHLSLVVPNVVAGIAALQTAGAQFAQGVNHTMLAAQLGAPGIAVLQTAGG  360

Query  361  HFAQGIGHLTTAGNAAVTVLIS  382
            HFAQGIGHLTTAGNAAVTVLIS
Sbjct  361  HFAQGIGHLTTAGNAAVTVLIS  382


>gi|253798599|ref|YP_003031600.1| PE family protein [Mycobacterium tuberculosis KZN 1435]
 gi|289553886|ref|ZP_06443096.1| PE family protein [Mycobacterium tuberculosis KZN 605]
 gi|297634926|ref|ZP_06952706.1| PE family protein [Mycobacterium tuberculosis KZN 4207]
 gi|297731917|ref|ZP_06961035.1| PE family protein [Mycobacterium tuberculosis KZN R506]
 gi|313659252|ref|ZP_07816132.1| PE family protein [Mycobacterium tuberculosis KZN V2475]
 gi|253320102|gb|ACT24705.1| PE family protein [Mycobacterium tuberculosis KZN 1435]
 gi|289438518|gb|EFD21011.1| PE family protein [Mycobacterium tuberculosis KZN 605]
 gi|328458367|gb|AEB03790.1| PE family protein [Mycobacterium tuberculosis KZN 4207]
Length=382

 Score =  712 bits (1837),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 381/382 (99%), Positives = 382/382 (100%), Gaps = 0/382 (0%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR
Sbjct  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHPSAAESV  120
            QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHPSAAESV
Sbjct  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHPSAAESV  120

Query  121  QNSAPTLGGGHSTVTAGLAAQAGRAVATVEQQAAAAVAPLPSAGAGLAQVVNGVVTAGQG  180
            QNSAPTLGGGHSTVTAGLAAQAGRAVATVEQQAAAAVAPLPSAGAGLAQVVNGVVTAGQG
Sbjct  121  QNSAPTLGGGHSTVTAGLAAQAGRAVATVEQQAAAAVAPLPSAGAGLAQVVNGVVTAGQG  180

Query  181  SAAKLATALQSAAPWLAKSGGEFIVAGQSALTGVALLQPAVVGVVQAGGTFLTAGTSAAT  240
            SAAKLATALQSAAPWLAKSGGEFIVAGQSALTGVALLQPAVVGVVQAGGTFLTAGTSAAT
Sbjct  181  SAAKLATALQSAAPWLAKSGGEFIVAGQSALTGVALLQPAVVGVVQAGGTFLTAGTSAAT  240

Query  241  GLGLLTLAGVEFSQGVGNLALASGTAATGLGLLGSAGVQLFSPAFLLAVPTALGGVGSLA  300
            GLGLLTLAGVEFSQGVGNLALASGTAATGLGLLGSAGVQLFSPAFLLAVPTALGGVGSLA
Sbjct  241  GLGLLTLAGVEFSQGVGNLALASGTAATGLGLLGSAGVQLFSPAFLLAVPTALGGVGSLA  300

Query  301  IAVVQLVQGVQHLSLVVPNVVAGIAALQTAGAQFAQGVNHTMLAAQLGAPGIAVLQTAGG  360
            IAVVQLVQGVQHLSLVVPNVVAGIAAL+TAGAQFAQGVNHTMLAAQLGAPGIAVLQTAGG
Sbjct  301  IAVVQLVQGVQHLSLVVPNVVAGIAALRTAGAQFAQGVNHTMLAAQLGAPGIAVLQTAGG  360

Query  361  HFAQGIGHLTTAGNAAVTVLIS  382
            HFAQGIGHLTTAGNAAVTVLIS
Sbjct  361  HFAQGIGHLTTAGNAAVTVLIS  382


>gi|298525812|ref|ZP_07013221.1| PE family protein [Mycobacterium tuberculosis 94_M4241A]
 gi|298495606|gb|EFI30900.1| PE family protein [Mycobacterium tuberculosis 94_M4241A]
Length=382

 Score =  712 bits (1837),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 381/382 (99%), Positives = 381/382 (99%), Gaps = 0/382 (0%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR
Sbjct  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHPSAAESV  120
            QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHPSAAESV
Sbjct  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHPSAAESV  120

Query  121  QNSAPTLGGGHSTVTAGLAAQAGRAVATVEQQAAAAVAPLPSAGAGLAQVVNGVVTAGQG  180
            QNSAPTLGGGHSTVTAGLAAQAGRAVATVEQQAAAAVAPLPSAGAGLAQVVNGVVTAGQG
Sbjct  121  QNSAPTLGGGHSTVTAGLAAQAGRAVATVEQQAAAAVAPLPSAGAGLAQVVNGVVTAGQG  180

Query  181  SAAKLATALQSAAPWLAKSGGEFIVAGQSALTGVALLQPAVVGVVQAGGTFLTAGTSAAT  240
            SAAKLATALQSAAPWLAKSGGEFIVAGQSALTGVALLQPAVVGVVQAGGTFLTAGTSAAT
Sbjct  181  SAAKLATALQSAAPWLAKSGGEFIVAGQSALTGVALLQPAVVGVVQAGGTFLTAGTSAAT  240

Query  241  GLGLLTLAGVEFSQGVGNLALASGTAATGLGLLGSAGVQLFSPAFLLAVPTALGGVGSLA  300
            GLGLLTLAGVEFSQGVGNLALASGTAATGLGLLGSAGVQLF PAFLLAVPTALGGVGSLA
Sbjct  241  GLGLLTLAGVEFSQGVGNLALASGTAATGLGLLGSAGVQLFRPAFLLAVPTALGGVGSLA  300

Query  301  IAVVQLVQGVQHLSLVVPNVVAGIAALQTAGAQFAQGVNHTMLAAQLGAPGIAVLQTAGG  360
            IAVVQLVQGVQHLSLVVPNVVAGIAALQTAGAQFAQGVNHTMLAAQLGAPGIAVLQTAGG
Sbjct  301  IAVVQLVQGVQHLSLVVPNVVAGIAALQTAGAQFAQGVNHTMLAAQLGAPGIAVLQTAGG  360

Query  361  HFAQGIGHLTTAGNAAVTVLIS  382
            HFAQGIGHLTTAGNAAVTVLIS
Sbjct  361  HFAQGIGHLTTAGNAAVTVLIS  382


>gi|289745606|ref|ZP_06504984.1| PE family protein [Mycobacterium tuberculosis 02_1987]
 gi|289758452|ref|ZP_06517830.1| PE family protein [Mycobacterium tuberculosis T85]
 gi|294994571|ref|ZP_06800262.1| PE family protein [Mycobacterium tuberculosis 210]
 gi|289686134|gb|EFD53622.1| PE family protein [Mycobacterium tuberculosis 02_1987]
 gi|289714016|gb|EFD78028.1| PE family protein [Mycobacterium tuberculosis T85]
 gi|326903944|gb|EGE50877.1| PE family protein [Mycobacterium tuberculosis W-148]
 gi|339295232|gb|AEJ47343.1| PE family protein [Mycobacterium tuberculosis CCDC5079]
 gi|339298852|gb|AEJ50962.1| PE family protein [Mycobacterium tuberculosis CCDC5180]
Length=382

 Score =  710 bits (1832),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 380/382 (99%), Positives = 380/382 (99%), Gaps = 0/382 (0%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR
Sbjct  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHPSAAESV  120
            QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHPSAAESV
Sbjct  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHPSAAESV  120

Query  121  QNSAPTLGGGHSTVTAGLAAQAGRAVATVEQQAAAAVAPLPSAGAGLAQVVNGVVTAGQG  180
            QNSAPTLGGGHSTVTAGLAAQAGRAVATVEQQAAAAVAPLPSAGAGLAQVVNGVVTAGQG
Sbjct  121  QNSAPTLGGGHSTVTAGLAAQAGRAVATVEQQAAAAVAPLPSAGAGLAQVVNGVVTAGQG  180

Query  181  SAAKLATALQSAAPWLAKSGGEFIVAGQSALTGVALLQPAVVGVVQAGGTFLTAGTSAAT  240
            SAAKLATALQSAAPWLAKSGGEFIVAGQSALTGVALLQPAVVGVVQAGGTFLTAGTSAAT
Sbjct  181  SAAKLATALQSAAPWLAKSGGEFIVAGQSALTGVALLQPAVVGVVQAGGTFLTAGTSAAT  240

Query  241  GLGLLTLAGVEFSQGVGNLALASGTAATGLGLLGSAGVQLFSPAFLLAVPTALGGVGSLA  300
            GLGLLTLAGVEFSQGVGNLALASGTAATGLGLLGSAGVQLF PAFLLAVPTALGGVGSLA
Sbjct  241  GLGLLTLAGVEFSQGVGNLALASGTAATGLGLLGSAGVQLFRPAFLLAVPTALGGVGSLA  300

Query  301  IAVVQLVQGVQHLSLVVPNVVAGIAALQTAGAQFAQGVNHTMLAAQLGAPGIAVLQTAGG  360
            IAVVQLVQGVQHLSLVVPNVVAGIAALQTAGAQFAQGVNHTML AQLGAPGIAVLQTAGG
Sbjct  301  IAVVQLVQGVQHLSLVVPNVVAGIAALQTAGAQFAQGVNHTMLTAQLGAPGIAVLQTAGG  360

Query  361  HFAQGIGHLTTAGNAAVTVLIS  382
            HFAQGIGHLTTAGNAAVTVLIS
Sbjct  361  HFAQGIGHLTTAGNAAVTVLIS  382


>gi|308375850|ref|ZP_07445311.2| PE family protein [Mycobacterium tuberculosis SUMu007]
 gi|308345132|gb|EFP33983.1| PE family protein [Mycobacterium tuberculosis SUMu007]
Length=344

 Score =  639 bits (1648),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 343/344 (99%), Positives = 344/344 (100%), Gaps = 0/344 (0%)

Query  39   VVSAAEDEVSTAIASIFGAYGRQCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSN  98
            +VSAAEDEVSTAIASIFGAYGRQCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSN
Sbjct  1    MVSAAEDEVSTAIASIFGAYGRQCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSN  60

Query  99   VLNAVNAPARSLLGHPSAAESVQNSAPTLGGGHSTVTAGLAAQAGRAVATVEQQAAAAVA  158
            VLNAVNAPARSLLGHPSAAESVQNSAPTLGGGHSTVTAGLAAQAGRAVATVEQQAAAAVA
Sbjct  61   VLNAVNAPARSLLGHPSAAESVQNSAPTLGGGHSTVTAGLAAQAGRAVATVEQQAAAAVA  120

Query  159  PLPSAGAGLAQVVNGVVTAGQGSAAKLATALQSAAPWLAKSGGEFIVAGQSALTGVALLQ  218
            PLPSAGAGLAQVVNGVVTAGQGSAAKLATALQSAAPWLAKSGGEFIVAGQSALTGVALLQ
Sbjct  121  PLPSAGAGLAQVVNGVVTAGQGSAAKLATALQSAAPWLAKSGGEFIVAGQSALTGVALLQ  180

Query  219  PAVVGVVQAGGTFLTAGTSAATGLGLLTLAGVEFSQGVGNLALASGTAATGLGLLGSAGV  278
            PAVVGVVQAGGTFLTAGTSAATGLGLLTLAGVEFSQGVGNLALASGTAATGLGLLGSAGV
Sbjct  181  PAVVGVVQAGGTFLTAGTSAATGLGLLTLAGVEFSQGVGNLALASGTAATGLGLLGSAGV  240

Query  279  QLFSPAFLLAVPTALGGVGSLAIAVVQLVQGVQHLSLVVPNVVAGIAALQTAGAQFAQGV  338
            QLFSPAFLLAVPTALGGVGSLAIAVVQLVQGVQHLSLVVPNVVAGIAALQTAGAQFAQGV
Sbjct  241  QLFSPAFLLAVPTALGGVGSLAIAVVQLVQGVQHLSLVVPNVVAGIAALQTAGAQFAQGV  300

Query  339  NHTMLAAQLGAPGIAVLQTAGGHFAQGIGHLTTAGNAAVTVLIS  382
            NHTMLAAQLGAPGIAVLQTAGGHFAQGIGHLTTAGNAAVTVLIS
Sbjct  301  NHTMLAAQLGAPGIAVLQTAGGHFAQGIGHLTTAGNAAVTVLIS  344


>gi|167969877|ref|ZP_02552154.1| PE family protein [Mycobacterium tuberculosis H37Ra]
Length=454

 Score =  621 bits (1602),  Expect = 5e-176, Method: Compositional matrix adjust.
 Identities = 350/355 (99%), Positives = 351/355 (99%), Gaps = 0/355 (0%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR
Sbjct  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHPSAAESV  120
            QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHPSAAESV
Sbjct  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHPSAAESV  120

Query  121  QNSAPTLGGGHSTVTAGLAAQAGRAVATVEQQAAAAVAPLPSAGAGLAQVVNGVVTAGQG  180
            QNSAPTLGGGHSTVTAGLAAQAGRAVATVEQQAAAAVAPLPSAGAGLAQVVNGVVTAGQG
Sbjct  121  QNSAPTLGGGHSTVTAGLAAQAGRAVATVEQQAAAAVAPLPSAGAGLAQVVNGVVTAGQG  180

Query  181  SAAKLATALQSAAPWLAKSGGEFIVAGQSALTGVALLQPAVVGVVQAGGTFLTAGTSAAT  240
            SAAKLATALQSAAPWLAKSGGEFIVAGQSALTGVALLQPAVVGVVQAGGTFLTAGTSAAT
Sbjct  181  SAAKLATALQSAAPWLAKSGGEFIVAGQSALTGVALLQPAVVGVVQAGGTFLTAGTSAAT  240

Query  241  GLGLLTLAGVEFSQGVGNLALASGTAATGLGLLGSAGVQLFSPAFLLAVPTALGGVGSLA  300
            GLGLLTLAGVEFSQGVGNLALASGTAATGLGLLGSAGVQLFSPAFLLAVPTALGGVGSLA
Sbjct  241  GLGLLTLAGVEFSQGVGNLALASGTAATGLGLLGSAGVQLFSPAFLLAVPTALGGVGSLA  300

Query  301  IAVVQLVQGVQHLSLVVPNVVAGIAALQTAGAQFAQGVNHTMLAAQLGAPGIAVL  355
            IAVVQLVQGVQHLSLVVPNVVAGIAALQTAGAQFAQGVNHTMLAAQLGA   + L
Sbjct  301  IAVVQLVQGVQHLSLVVPNVVAGIAALQTAGAQFAQGVNHTMLAAQLGAHWDSCL  355


>gi|183982975|ref|YP_001851266.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183176301|gb|ACC41411.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=443

 Score =  130 bits (326),  Expect = 5e-28, Method: Compositional matrix adjust.
 Identities = 62/114 (55%), Positives = 87/114 (77%), Gaps = 0/114 (0%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M FL+V+P+ V ++A++L  + S L  + AAAA PTT + +AA DEVSTAIA++FG+Y +
Sbjct  1    MSFLTVLPDMVATSAENLVDVCSTLGVANAAAAVPTTGIAAAASDEVSTAIATLFGSYAQ  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHP  114
            + Q LSA+A+AFHDEFV++LK    AY + E ANA+ N++  VNAPAR+LLGHP
Sbjct  61   EYQTLSARAAAFHDEFVSVLKGSGAAYLSAEVANAEQNLIKTVNAPARALLGHP  114


>gi|183981460|ref|YP_001849751.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183174786|gb|ACC39896.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=1483

 Score =  117 bits (293),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 63/114 (56%), Positives = 85/114 (75%), Gaps = 0/114 (0%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M F++V PE V +A +DLAGI S++SA+ AAA   TT VV AA DEVS AIA++FG++ R
Sbjct  1    MSFVNVAPEMVAAAVEDLAGIGSSISAANAAAVALTTDVVPAAADEVSAAIAALFGSHAR  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHP  114
            + Q +SAQ++AFH+  V  L++GA+AY  TE ANAQ N+LNAVN P ++ LG P
Sbjct  61   EYQAISAQSAAFHERLVQTLRSGASAYLGTELANAQQNLLNAVNGPTQAWLGRP  114


>gi|240173029|ref|ZP_04751687.1| PE-PGRS family protein [Mycobacterium kansasii ATCC 12478]
Length=521

 Score =  110 bits (275),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 58/100 (58%), Positives = 75/100 (75%), Gaps = 0/100 (0%)

Query  1   MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
           M F+   PE V+ AA DLAG+RS+L+ + A AAGPTT + +AA+DEVS AIAS+FG +G+
Sbjct  1   MSFVIAAPELVQGAAHDLAGLRSSLAEAAAIAAGPTTGIAAAAQDEVSIAIASMFGNFGQ  60

Query  61  QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVL  100
           + QVLSAQA AFHD FV+LL TGA AY + E AN +  +L
Sbjct  61  EFQVLSAQAQAFHDRFVSLLNTGAGAYLSAEAANVEQTLL  100


>gi|240170011|ref|ZP_04748670.1| PE-PGRS family protein [Mycobacterium kansasii ATCC 12478]
Length=382

 Score =  108 bits (271),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 63/114 (56%), Positives = 80/114 (71%), Gaps = 0/114 (0%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M F+   PE +  AA DLA I S +S++ AAAA P T VV+A  DEVS AI+ +F AYGR
Sbjct  1    MSFVITAPETMAVAATDLADISSTISSANAAAAAPITGVVAAGTDEVSAAISGLFNAYGR  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHP  114
            + Q LSAQA+ FH+  V+LL  GA AY  TE ANA+   ++AVNAPA++LLGHP
Sbjct  61   EFQALSAQAATFHERLVSLLNGGAAAYLGTEIANAEQASISAVNAPAQTLLGHP  114


>gi|183982472|ref|YP_001850763.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|7630282|gb|AAF65168.1|AF201682_2 PE-PGRS homolog MAG24-1 [Mycobacterium marinum]
 gi|183175798|gb|ACC40908.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=638

 Score =  108 bits (270),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 65/120 (55%), Positives = 88/120 (74%), Gaps = 6/120 (5%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M F++V+P  V +AA DLA IRSALS + AAAAGPTT V++A  DEVSTAI+ +FGA+G+
Sbjct  1    MSFVNVVPNTVAAAAGDLASIRSALSEATAAAAGPTTDVLAAGGDEVSTAISQLFGAHGQ  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTE------FANAQSNVLNAVNAPARSLLGHP  114
            + QV+SAQ   FHD+ V L++ GA AY + E       + A+  ++NAVNAPA++LLGHP
Sbjct  61   EFQVVSAQLRGFHDQLVRLMRAGAAAYASVEATAQQDLSMAEQGLVNAVNAPAQALLGHP  120


>gi|183982114|ref|YP_001850405.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183175440|gb|ACC40550.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=1397

 Score =  105 bits (263),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 58/114 (51%), Positives = 78/114 (69%), Gaps = 0/114 (0%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M F+SV PE V +AA DL+GI SA++ + + AA  TT V+ AA DEVS AIA++FG + +
Sbjct  1    MSFVSVTPEMVVAAASDLSGINSAIAQANSVAAAATTTVLPAAADEVSAAIAALFGTHAQ  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHP  114
            Q Q +SA+ +AFHD FV  L TGA +Y   E ANA+  +L  VNAP ++L G P
Sbjct  61   QYQAISAELAAFHDRFVQSLNTGAGSYLRAEAANAEQGLLGLVNAPTQALFGRP  114


>gi|240168031|ref|ZP_04746690.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=399

 Score =  101 bits (251),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 60/114 (53%), Positives = 80/114 (71%), Gaps = 0/114 (0%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M  L+V+P+ + +AA +LA I SA+SA+ AAAA PTT +V+ A D+VS A+ + F  + +
Sbjct  1    MSILNVVPDVMNAAAGNLAEIGSAMSAANAAAAPPTTGLVAMAADQVSAAVTAAFATHAQ  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHP  114
              Q LSA+ +AFHD+FV  L  GA AY   E ANA+ N+LNAVN PA SLLGHP
Sbjct  61   DYQALSAKMAAFHDQFVRTLSNGAGAYLGAEIANAEQNLLNAVNGPALSLLGHP  114


>gi|183982664|ref|YP_001850955.1| PE-PGRS family protein, PE_PGRS50 [Mycobacterium marinum M]
 gi|183175990|gb|ACC41100.1| PE-PGRS family protein, PE_PGRS50 [Mycobacterium marinum M]
Length=2118

 Score =  100 bits (250),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 63/123 (52%), Positives = 81/123 (66%), Gaps = 9/123 (7%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M  ++V PE V  AA DLA I S+L A+ AAAAGPTT V+SAA DEVS AIA++FG +  
Sbjct  1    MSLVTVSPELVAGAASDLARIGSSLGAANAAAAGPTTTVLSAAADEVSVAIATLFGTHAA  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFAN---------AQSNVLNAVNAPARSLL  111
            + Q LSA+ +AFH++FV  L +GA  Y +TE  N         A+ N LNA+NAP +S L
Sbjct  61   EYQSLSARMAAFHEQFVQTLTSGAGIYVSTEATNASFISALQLAEQNALNAINAPTQSWL  120

Query  112  GHP  114
            G P
Sbjct  121  GRP  123


>gi|306780127|ref|ZP_07418464.1| PE family protein [Mycobacterium tuberculosis SUMu002]
 gi|308326955|gb|EFP15806.1| PE family protein [Mycobacterium tuberculosis SUMu002]
Length=295

 Score = 99.8 bits (247),  Expect = 8e-19, Method: Compositional matrix adjust.
 Identities = 62/114 (55%), Positives = 79/114 (70%), Gaps = 0/114 (0%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M F+   PE + +AA DLA IRS + A+ AAAA PTT  ++ A DEVS  IA++FGA  +
Sbjct  1    MSFVIASPEALLAAATDLAAIRSTIRAANAAAAVPTTGALAPAADEVSAGIAALFGAQAQ  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHP  114
              Q +SAQA+AFHD FV LL  G  +Y + E ANAQ N+LNAVNAP ++LLG P
Sbjct  61   SYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRP  114


>gi|289447720|ref|ZP_06437464.1| PE-PGRS family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289420678|gb|EFD17879.1| PE-PGRS family protein [Mycobacterium tuberculosis CPHL_A]
Length=304

 Score = 98.6 bits (244),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 62/114 (55%), Positives = 79/114 (70%), Gaps = 0/114 (0%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M F+   PE + +AA DLA IRS + A+ AAAA PTT  ++ A DEVS  IA++FGA  +
Sbjct  1    MSFVIASPEALLAAATDLAAIRSTIRAANAAAAVPTTGALAPAADEVSAGIAALFGAQAQ  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHP  114
              Q +SAQA+AFHD FV LL  G  +Y + E ANAQ N+LNAVNAP ++LLG P
Sbjct  61   SYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRP  114


>gi|289745374|ref|ZP_06504752.1| PE family protein [Mycobacterium tuberculosis 02_1987]
 gi|289685902|gb|EFD53390.1| PE family protein [Mycobacterium tuberculosis 02_1987]
Length=366

 Score = 98.6 bits (244),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 62/114 (55%), Positives = 79/114 (70%), Gaps = 0/114 (0%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M F+   PE + +AA DLA IRS + A+ AAAA PTT  ++ A DEVS  IA++FGA  +
Sbjct  1    MSFVIASPEALLAAATDLAAIRSTIRAANAAAAVPTTGALAPAADEVSAGIAALFGAQAQ  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHP  114
              Q +SAQA+AFHD FV LL  G  +Y + E ANAQ N+LNAVNAP ++LLG P
Sbjct  61   SYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRP  114


>gi|289443603|ref|ZP_06433347.1| PE PGRS family protein [Mycobacterium tuberculosis T46]
 gi|289416522|gb|EFD13762.1| PE PGRS family protein [Mycobacterium tuberculosis T46]
Length=491

 Score = 98.2 bits (243),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 62/114 (55%), Positives = 79/114 (70%), Gaps = 0/114 (0%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M F+   PE + +AA DLA IRS + A+ AAAA PTT  ++ A DEVS  IA++FGA  +
Sbjct  1    MSFVIASPEALLAAATDLAAIRSTIRAANAAAAVPTTGALAPAADEVSAGIAALFGAQAQ  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHP  114
              Q +SAQA+AFHD FV LL  G  +Y + E ANAQ N+LNAVNAP ++LLG P
Sbjct  61   SYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRP  114


>gi|340627111|ref|YP_004745563.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
 gi|340005301|emb|CCC44457.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
Length=489

 Score = 98.2 bits (243),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 62/114 (55%), Positives = 79/114 (70%), Gaps = 0/114 (0%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M F+   PE + +AA DLA IRS + A+ AAAA PTT  ++ A DEVS  IA++FGA  +
Sbjct  1    MSFVIASPEALLAAATDLAAIRSTIRAANAAAAVPTTGALAPAADEVSAGIAALFGAQAQ  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHP  114
              Q +SAQA+AFHD FV LL  G  +Y + E ANAQ N+LNAVNAP ++LLG P
Sbjct  61   SYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRP  114


>gi|15841589|ref|NP_336626.1| PE family-related protein [Mycobacterium tuberculosis CDC1551]
 gi|31793281|ref|NP_855774.1| hypothetical protein Mb2125c [Mycobacterium bovis AF2122/97]
 gi|121637983|ref|YP_978207.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 16 more sequence titles
 
gi|224990477|ref|YP_002645164.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289750693|ref|ZP_06510071.1| PE-PGRS family protein [Mycobacterium tuberculosis T92]
 gi|289758215|ref|ZP_06517593.1| predicted protein [Mycobacterium tuberculosis T85]
 gi|294997042|ref|ZP_06802733.1| PE-PGRS family protein [Mycobacterium tuberculosis 210]
 gi|298525597|ref|ZP_07013006.1| PE family-related protein [Mycobacterium tuberculosis 94_M4241A]
 gi|61229786|sp|P0A688.1|PG36_MYCTU RecName: Full=Uncharacterized PE-PGRS family protein PE_PGRS36
 gi|61229787|sp|P0A689.1|PG36_MYCBO RecName: Full=Uncharacterized PE-PGRS family protein PE_PGRS36
 gi|13881838|gb|AAK46440.1| PE family-related protein [Mycobacterium tuberculosis CDC1551]
 gi|31618873|emb|CAD96978.1| conserved hypothetical protein, PE_PGRS family [Mycobacterium 
bovis AF2122/97]
 gi|121493631|emb|CAL72106.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224773590|dbj|BAH26396.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289691280|gb|EFD58709.1| PE-PGRS family protein [Mycobacterium tuberculosis T92]
 gi|289713779|gb|EFD77791.1| predicted protein [Mycobacterium tuberculosis T85]
 gi|298495391|gb|EFI30685.1| PE family-related protein [Mycobacterium tuberculosis 94_M4241A]
 gi|339298644|gb|AEJ50754.1| PE-PGRS family protein [Mycobacterium tuberculosis CCDC5180]
 gi|341602021|emb|CCC64695.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Moreau RDJ]
Length=491

 Score = 98.2 bits (243),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 62/114 (55%), Positives = 79/114 (70%), Gaps = 0/114 (0%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M F+   PE + +AA DLA IRS + A+ AAAA PTT  ++ A DEVS  IA++FGA  +
Sbjct  1    MSFVIASPEALLAAATDLAAIRSTIRAANAAAAVPTTGALAPAADEVSAGIAALFGAQAQ  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHP  114
              Q +SAQA+AFHD FV LL  G  +Y + E ANAQ N+LNAVNAP ++LLG P
Sbjct  61   SYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRP  114


>gi|306797954|ref|ZP_07436256.1| PE family protein [Mycobacterium tuberculosis SUMu006]
 gi|308341734|gb|EFP30585.1| PE family protein [Mycobacterium tuberculosis SUMu006]
Length=350

 Score = 98.2 bits (243),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 62/114 (55%), Positives = 79/114 (70%), Gaps = 0/114 (0%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M F+   PE + +AA DLA IRS + A+ AAAA PTT  ++ A DEVS  IA++FGA  +
Sbjct  1    MSFVIASPEALLAAATDLAAIRSTIRAANAAAAVPTTGALAPAADEVSAGIAALFGAQAQ  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHP  114
              Q +SAQA+AFHD FV LL  G  +Y + E ANAQ N+LNAVNAP ++LLG P
Sbjct  61   SYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRP  114


>gi|340626466|ref|YP_004744918.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
 gi|340004656|emb|CCC43800.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
Length=1006

 Score = 97.8 bits (242),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 55/120 (46%), Positives = 76/120 (64%), Gaps = 6/120 (5%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M  + V PE V +AA D+A I S   A+ + AAG TT+V++A  DEVS AIA++FG++ R
Sbjct  1    MSLVIVTPELVAAAASDVARIGSGFGAANSTAAGSTTSVLAAGADEVSAAIATLFGSHAR  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANA------QSNVLNAVNAPARSLLGHP  114
            + Q +S Q +AFHD FV  L     +Y + E  NA      + NVLNA+NAP ++LLG P
Sbjct  61   EYQAISTQVAAFHDRFVQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLGRP  120


>gi|289574131|ref|ZP_06454358.1| predicted protein [Mycobacterium tuberculosis K85]
 gi|289538562|gb|EFD43140.1| predicted protein [Mycobacterium tuberculosis K85]
Length=293

 Score = 97.4 bits (241),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 54/120 (45%), Positives = 77/120 (65%), Gaps = 6/120 (5%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M  + V PE V +AA D+A I S++  + +AAAG TT+V++A  DEVS AIA++FG++ R
Sbjct  1    MSLVIVTPETVAAAASDVARIGSSIGVANSAAAGSTTSVLAAGADEVSAAIATLFGSHAR  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANA------QSNVLNAVNAPARSLLGHP  114
            + Q +S Q +AFHD F   L     +Y + E  NA      + NVLNA+NAP ++LLG P
Sbjct  61   EYQAISTQVAAFHDRFAQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLGRP  120


>gi|289574779|ref|ZP_06455006.1| LOW QUALITY PROTEIN: PE-PGRS family protein [Mycobacterium tuberculosis 
K85]
 gi|289539210|gb|EFD43788.1| LOW QUALITY PROTEIN: PE-PGRS family protein [Mycobacterium tuberculosis 
K85]
Length=490

 Score = 97.1 bits (240),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 62/114 (55%), Positives = 79/114 (70%), Gaps = 0/114 (0%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M F+   PE + +AA DLA IRS + A+ AAAA PTT  ++ A DEVS  IA++FGA  +
Sbjct  1    MSFVIASPEALLAAATDLAAIRSTIRAANAAAAVPTTGALAPAADEVSAGIAALFGAQAQ  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHP  114
              Q +SAQA+AFHD FV LL  G  +Y + E ANAQ N+LNAVNAP ++LLG P
Sbjct  61   SYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRP  114


>gi|31793670|ref|NP_856163.1| hypothetical protein Mb2518c [Mycobacterium bovis AF2122/97]
 gi|31619263|emb|CAD97379.1| PE-PGRS FAMILY PROTEIN [FIRST PART] [Mycobacterium bovis AF2122/97]
Length=509

 Score = 95.9 bits (237),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 60/116 (52%), Positives = 77/116 (67%), Gaps = 2/116 (1%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M ++   PE + +AA DLA I S +SA+ A AA PTT VV+A  DEVS  IA++F A+ +
Sbjct  1    MSYVIATPEMMATAAFDLARIGSQVSAASAVAAMPTTEVVAAGADEVSAGIAALFSAHAQ  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFAN--AQSNVLNAVNAPARSLLGHP  114
            + Q LSAQA+AFHD+FV+ L   A  Y  TE AN  A   VL AVNAP ++LLG P
Sbjct  61   EYQALSAQAAAFHDQFVHTLTAAARWYTATEIANAAAMRVVLGAVNAPTQTLLGRP  116


>gi|313659421|ref|ZP_07816301.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN V2475]
Length=358

 Score = 94.7 bits (234),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 60/116 (52%), Positives = 77/116 (67%), Gaps = 2/116 (1%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M ++   PE + +AA DLA I S +SA+ A AA PTT VV+A  DEVS  IA++F A+ +
Sbjct  1    MSYVIATPEMMATAAFDLARIGSQVSAASAVAAMPTTEVVAAGADEVSAGIAALFSAHAQ  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFAN--AQSNVLNAVNAPARSLLGHP  114
            + Q LSAQA+AFHD+FV+ L   A  Y  TE AN  A   VL AVNAP ++LLG P
Sbjct  61   EYQALSAQAAAFHDQFVHTLTAAARWYTATEIANAAAMRVVLGAVNAPTQTLLGRP  116


>gi|297635096|ref|ZP_06952876.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 4207]
Length=371

 Score = 94.7 bits (234),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 60/116 (52%), Positives = 77/116 (67%), Gaps = 2/116 (1%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M ++   PE + +AA DLA I S +SA+ A AA PTT VV+A  DEVS  IA++F A+ +
Sbjct  1    MSYVIATPEMMATAAFDLARIGSQVSAASAVAAMPTTEVVAAGADEVSAGIAALFSAHAQ  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFAN--AQSNVLNAVNAPARSLLGHP  114
            + Q LSAQA+AFHD+FV+ L   A  Y  TE AN  A   VL AVNAP ++LLG P
Sbjct  61   EYQALSAQAAAFHDQFVHTLTAAARWYTATEIANAAAMRVVLGAVNAPTQTLLGRP  116


>gi|297732087|ref|ZP_06961205.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN R506]
Length=387

 Score = 94.7 bits (234),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 60/116 (52%), Positives = 77/116 (67%), Gaps = 2/116 (1%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M ++   PE + +AA DLA I S +SA+ A AA PTT VV+A  DEVS  IA++F A+ +
Sbjct  1    MSYVIATPEMMATAAFDLARIGSQVSAASAVAAMPTTEVVAAGADEVSAGIAALFSAHAQ  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFAN--AQSNVLNAVNAPARSLLGHP  114
            + Q LSAQA+AFHD+FV+ L   A  Y  TE AN  A   VL AVNAP ++LLG P
Sbjct  61   EYQALSAQAAAFHDQFVHTLTAAARWYTATEIANAAAMRVVLGAVNAPTQTLLGRP  116


>gi|183980779|ref|YP_001849070.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183174105|gb|ACC39215.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=1058

 Score = 94.7 bits (234),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 59/115 (52%), Positives = 81/115 (71%), Gaps = 4/115 (3%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSAL-SASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYG  59
            M +L   P+ + +AA DLAGI + +  ASYAAAA PTTAV+SAA DE+S  IA++FGA+G
Sbjct  1    MSYLIATPDLLSAAATDLAGIGNTIGQASYAAAA-PTTAVISAAADEISMQIAALFGAHG  59

Query  60   RQCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHP  114
            +  Q +S+QA+ FHD+FV  L TGA++Y +     A  N+LN VNAP ++LL  P
Sbjct  60   QSFQAVSSQAALFHDQFVQALTTGASSYASA--EAASQNLLNLVNAPTQALLNRP  112


>gi|121638372|ref|YP_978596.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224990866|ref|YP_002645553.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|121494020|emb|CAL72498.1| PE-PGRS family protein [first part] [Mycobacterium bovis BCG 
str. Pasteur 1173P2]
 gi|224773979|dbj|BAH26785.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|341602410|emb|CCC65086.1| PE-PGRS family protein [first part] [Mycobacterium bovis BCG 
str. Moreau RDJ]
Length=475

 Score = 94.4 bits (233),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 60/116 (52%), Positives = 77/116 (67%), Gaps = 2/116 (1%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M ++   PE + +AA DLA I S +SA+ A AA PTT VV+A  DEVS  IA++F A+ +
Sbjct  1    MSYVIATPEMMATAAFDLARIGSQVSAASAVAAMPTTEVVAAGADEVSAGIAALFSAHAQ  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFAN--AQSNVLNAVNAPARSLLGHP  114
            + Q LSAQA+AFHD+FV+ L   A  Y  TE AN  A   VL AVNAP ++LLG P
Sbjct  61   EYQALSAQAAAFHDQFVHTLTAAARWYTATEIANAAAMRVVLGAVNAPTQTLLGRP  116


>gi|340627504|ref|YP_004745956.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
 gi|340005694|emb|CCC44860.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
Length=1660

 Score = 94.4 bits (233),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 60/116 (52%), Positives = 77/116 (67%), Gaps = 2/116 (1%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M ++   PE + +AA DLA I S +SA+ A AA PTT VV+A  DEVS  IA++F A+ +
Sbjct  1    MSYVIATPEMMATAAFDLARIGSQVSAASAVAAMPTTEVVAAGADEVSAGIAALFSAHAQ  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFAN--AQSNVLNAVNAPARSLLGHP  114
            + Q LSAQA+AFHD+FV+ L   A  Y  TE AN  A   VL AVNAP ++LLG P
Sbjct  61   EYQALSAQAAAFHDQFVHTLTAAARWYTATEIANAAAMRAVLGAVNAPTQTLLGRP  116


>gi|289553720|ref|ZP_06442930.1| LOW QUALITY PROTEIN: predicted protein [Mycobacterium tuberculosis 
KZN 605]
 gi|289438352|gb|EFD20845.1| LOW QUALITY PROTEIN: predicted protein [Mycobacterium tuberculosis 
KZN 605]
Length=1323

 Score = 94.4 bits (233),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 60/116 (52%), Positives = 77/116 (67%), Gaps = 2/116 (1%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M ++   PE + +AA DLA I S +SA+ A AA PTT VV+A  DEVS  IA++F A+ +
Sbjct  6    MSYVIATPEMMATAAFDLARIGSQVSAASAVAAMPTTEVVAAGADEVSAGIAALFSAHAQ  65

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFAN--AQSNVLNAVNAPARSLLGHP  114
            + Q LSAQA+AFHD+FV+ L   A  Y  TE AN  A   VL AVNAP ++LLG P
Sbjct  66   EYQALSAQAAAFHDQFVHTLTAAARWYTATEIANAAAMRVVLGAVNAPTQTLLGRP  121


>gi|183982475|ref|YP_001850766.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183175801|gb|ACC40911.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=2407

 Score = 94.4 bits (233),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 86/213 (41%), Positives = 116/213 (55%), Gaps = 42/213 (19%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M F++ +PE VESAAQDLAGIRSAL  +  A A PTTA+ +A EDEVS AIA++FG +G+
Sbjct  1    MSFVTAVPELVESAAQDLAGIRSALVEAAQAVAAPTTALAAAGEDEVSAAIAALFGTFGQ  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHPSAAESV  120
            + Q +SAQA++FH+ FV +L   A +Y   E AN              +LL   SAA +V
Sbjct  61   EYQAVSAQAASFHESFVRVLSGAAASYVEAEVAN------------GAALLAGESAAAAV  108

Query  121  QNSAPTLGGGHSTVTAGLAA----QAGRAVATVE---------QQAAAAVAPLPSAGAGL  167
                   GG    +TAGL+A    QA  ++AT           Q   A V+ L   G GL
Sbjct  109  S------GGFSGGLTAGLSAELALQAANSLATAFGSGVSGLALQTGGALVSGL---GTGL  159

Query  168  AQVVNGVVTAGQGSAAKLATALQSAAPWLAKSG  200
             Q    +V+AGQ        ALQ+   ++A +G
Sbjct  160  VQTGEVIVSAGQ--------ALQNLGSFMAGAG  184


>gi|344220317|gb|AEN00948.1| PE-PGRS family protein [Mycobacterium tuberculosis CTRI-2]
Length=1644

 Score = 94.0 bits (232),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 60/116 (52%), Positives = 77/116 (67%), Gaps = 2/116 (1%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M ++   PE + +AA DLA I S +SA+ A AA PTT VV+A  DEVS  IA++F A+ +
Sbjct  1    MSYVIATPEMMATAAFDLARIGSQVSAASAVAAMPTTEVVAAGADEVSAGIAALFSAHAQ  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFAN--AQSNVLNAVNAPARSLLGHP  114
            + Q LSAQA+AFHD+FV+ L   A  Y  TE AN  A   VL AVNAP ++LLG P
Sbjct  61   EYQALSAQAAAFHDQFVHTLTAAARWYTATEIANAAAMRVVLGAVNAPTQTLLGRP  116


>gi|339632516|ref|YP_004724158.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
 gi|339331872|emb|CCC27575.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
Length=1657

 Score = 94.0 bits (232),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 60/116 (52%), Positives = 77/116 (67%), Gaps = 2/116 (1%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M ++   PE + +AA DLA I S +SA+ A AA PTT VV+A  DEVS  IA++F A+ +
Sbjct  1    MSYVIATPEMMATAAFDLARIGSQVSAASAVAAMPTTEVVAAGADEVSAGIAALFSAHAQ  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFAN--AQSNVLNAVNAPARSLLGHP  114
            + Q LSAQA+AFHD+FV+ L   A  Y  TE AN  A   VL AVNAP ++LLG P
Sbjct  61   EYQALSAQAAAFHDQFVHTLTAAARWYTATEIANAAAMRVVLGAVNAPTQTLLGRP  116


>gi|253798432|ref|YP_003031433.1| hypothetical protein TBMG_04024 [Mycobacterium tuberculosis KZN 
1435]
 gi|253319935|gb|ACT24538.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
1435]
 gi|328458200|gb|AEB03623.1| hypothetical protein TBSG_01494 [Mycobacterium tuberculosis KZN 
4207]
Length=1616

 Score = 94.0 bits (232),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 60/116 (52%), Positives = 77/116 (67%), Gaps = 2/116 (1%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M ++   PE + +AA DLA I S +SA+ A AA PTT VV+A  DEVS  IA++F A+ +
Sbjct  1    MSYVIATPEMMATAAFDLARIGSQVSAASAVAAMPTTEVVAAGADEVSAGIAALFSAHAQ  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFAN--AQSNVLNAVNAPARSLLGHP  114
            + Q LSAQA+AFHD+FV+ L   A  Y  TE AN  A   VL AVNAP ++LLG P
Sbjct  61   EYQALSAQAAAFHDQFVHTLTAAARWYTATEIANAAAMRVVLGAVNAPTQTLLGRP  116


>gi|57116996|ref|YP_177887.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Rv]
 gi|148662325|ref|YP_001283848.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
 gi|7441223|pir||A70869 hypothetical glycine-rich protein Rv2490c - Mycobacterium tuberculosis 
(strain H37RV)
 gi|41353424|emb|CAE55496.1| PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|148506477|gb|ABQ74286.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
Length=1660

 Score = 94.0 bits (232),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 60/116 (52%), Positives = 77/116 (67%), Gaps = 2/116 (1%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M ++   PE + +AA DLA I S +SA+ A AA PTT VV+A  DEVS  IA++F A+ +
Sbjct  1    MSYVIATPEMMATAAFDLARIGSQVSAASAVAAMPTTEVVAAGADEVSAGIAALFSAHAQ  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFAN--AQSNVLNAVNAPARSLLGHP  114
            + Q LSAQA+AFHD+FV+ L   A  Y  TE AN  A   VL AVNAP ++LLG P
Sbjct  61   EYQALSAQAAAFHDQFVHTLTAAARWYTATEIANAAAMRVVLGAVNAPTQTLLGRP  116


>gi|15842017|ref|NP_337054.1| PE_PGRS family protein [Mycobacterium tuberculosis CDC1551]
 gi|13882294|gb|AAK46868.1| PE_PGRS family protein [Mycobacterium tuberculosis CDC1551]
Length=1665

 Score = 93.6 bits (231),  Expect = 5e-17, Method: Compositional matrix adjust.
 Identities = 60/116 (52%), Positives = 77/116 (67%), Gaps = 2/116 (1%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M ++   PE + +AA DLA I S +SA+ A AA PTT VV+A  DEVS  IA++F A+ +
Sbjct  6    MSYVIATPEMMATAAFDLARIGSQVSAASAVAAMPTTEVVAAGADEVSAGIAALFSAHAQ  65

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFAN--AQSNVLNAVNAPARSLLGHP  114
            + Q LSAQA+AFHD+FV+ L   A  Y  TE AN  A   VL AVNAP ++LLG P
Sbjct  66   EYQALSAQAAAFHDQFVHTLTAAARWYTATEIANAAAMRVVLGAVNAPTQTLLGRP  121


>gi|297634017|ref|ZP_06951797.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 4207]
Length=334

 Score = 93.6 bits (231),  Expect = 5e-17, Method: Compositional matrix adjust.
 Identities = 56/120 (47%), Positives = 78/120 (65%), Gaps = 6/120 (5%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M  + V PE V +AA D+A I S++ A+ AAAAG TT+V++A  DEVS AIA++FG++ R
Sbjct  1    MSLVIVTPETVAAAASDVARIGSSIGAANAAAAGSTTSVLAAGADEVSAAIATLFGSHAR  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANA------QSNVLNAVNAPARSLLGHP  114
            + Q +S Q +AFHD F   L     +Y + E  NA      + NVLNA+NAP ++LLG P
Sbjct  61   EYQAISTQVAAFHDRFAQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLGRP  120


>gi|183980507|ref|YP_001848798.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183173833|gb|ACC38943.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=675

 Score = 93.6 bits (231),  Expect = 6e-17, Method: Compositional matrix adjust.
 Identities = 55/114 (49%), Positives = 77/114 (68%), Gaps = 0/114 (0%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M F+SVIPEQ+ +AA +LAG+ S +S + A AAGPT A ++A  D+VS A++S FGAY R
Sbjct  1    MSFVSVIPEQLTAAATNLAGVGSTISTANATAAGPTAAALAAGADDVSAAVSSFFGAYAR  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHP  114
              Q  S Q  A HD+FV  + +GA +Y   E  + Q  +L+A+NAP ++LLG P
Sbjct  61   DYQAFSVQVEALHDQFVRAVTSGAASYAGAEATSVQQILLDAINAPTQALLGRP  114


>gi|253799499|ref|YP_003032500.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435]
 gi|289554759|ref|ZP_06443969.1| predicted protein [Mycobacterium tuberculosis KZN 605]
 gi|253321002|gb|ACT25605.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435]
 gi|289439391|gb|EFD21884.1| predicted protein [Mycobacterium tuberculosis KZN 605]
 gi|328459247|gb|AEB04670.1| hypothetical protein TBSG_02541 [Mycobacterium tuberculosis KZN 
4207]
Length=738

 Score = 93.2 bits (230),  Expect = 6e-17, Method: Compositional matrix adjust.
 Identities = 56/120 (47%), Positives = 78/120 (65%), Gaps = 6/120 (5%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M  + V PE V +AA D+A I S++ A+ AAAAG TT+V++A  DEVS AIA++FG++ R
Sbjct  2    MSLVIVTPETVAAAASDVARIGSSIGAANAAAAGSTTSVLAAGADEVSAAIATLFGSHAR  61

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANA------QSNVLNAVNAPARSLLGHP  114
            + Q +S Q +AFHD F   L     +Y + E  NA      + NVLNA+NAP ++LLG P
Sbjct  62   EYQAISTQVAAFHDRFAQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLGRP  121


>gi|253799501|ref|YP_003032502.1| hypothetical protein TBMG_02531 [Mycobacterium tuberculosis KZN 
1435]
 gi|253321004|gb|ACT25607.1| predicted protein [Mycobacterium tuberculosis KZN 1435]
 gi|328459249|gb|AEB04672.1| hypothetical protein TBSG_02543 [Mycobacterium tuberculosis KZN 
4207]
Length=1408

 Score = 92.8 bits (229),  Expect = 9e-17, Method: Compositional matrix adjust.
 Identities = 56/120 (47%), Positives = 78/120 (65%), Gaps = 6/120 (5%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M  + V PE V +AA D+A I S++ A+ AAAAG TT+V++A  DEVS AIA++FG++ R
Sbjct  2    MSLVIVTPETVAAAASDVARIGSSIGAANAAAAGSTTSVLAAGADEVSAAIATLFGSHAR  61

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANA------QSNVLNAVNAPARSLLGHP  114
            + Q +S Q +AFHD F   L     +Y + E  NA      + NVLNA+NAP ++LLG P
Sbjct  62   EYQAISTQVAAFHDRFAQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLGRP  121


>gi|297634014|ref|ZP_06951794.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 4207]
Length=406

 Score = 92.4 bits (228),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 56/120 (47%), Positives = 78/120 (65%), Gaps = 6/120 (5%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M  + V PE V +AA D+A I S++ A+ AAAAG TT+V++A  DEVS AIA++FG++ R
Sbjct  1    MSLVIVTPETVAAAASDVARIGSSIGAANAAAAGSTTSVLAAGADEVSAAIATLFGSHAR  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANA------QSNVLNAVNAPARSLLGHP  114
            + Q +S Q +AFHD F   L     +Y + E  NA      + NVLNA+NAP ++LLG P
Sbjct  61   EYQAISTQVAAFHDRFAQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLGRP  120


>gi|148823688|ref|YP_001288442.1| PE-PGRS family protein [Mycobacterium tuberculosis F11]
 gi|148722215|gb|ABR06840.1| PE-PGRS family protein [Mycobacterium tuberculosis F11]
Length=272

 Score = 91.7 bits (226),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 59/109 (55%), Positives = 74/109 (68%), Gaps = 2/109 (1%)

Query  8    PEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGRQCQVLSA  67
            PE + +AA DLA I S +SA+ A AA PTT VV+A  DEVS  IA++F A+ ++ Q LSA
Sbjct  5    PEMMATAAFDLARIGSQVSAASAVAAMPTTEVVAAGADEVSAGIAALFSAHAQEYQALSA  64

Query  68   QASAFHDEFVNLLKTGATAYRNTEFAN--AQSNVLNAVNAPARSLLGHP  114
            QA+AFHD+FV+ L   A  Y  TE AN  A   VL AVNAP ++LLG P
Sbjct  65   QAAAFHDQFVHTLTAAARWYTATEIANAAAMRVVLGAVNAPTQTLLGRP  113


>gi|183980330|ref|YP_001848621.1| PE-PGRS family protein, PE_PGRS1 [Mycobacterium marinum M]
 gi|183173656|gb|ACC38766.1| PE-PGRS family protein, PE_PGRS1 [Mycobacterium marinum M]
Length=557

 Score = 90.9 bits (224),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 60/123 (49%), Positives = 79/123 (65%), Gaps = 9/123 (7%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M ++   PE V +AA DLAG++S LSA+ +AAAGPT AV++A  DEVS  IA +F A+ +
Sbjct  1    MSYVFATPELVAAAATDLAGVQSVLSAANSAAAGPTMAVMAAGADEVSALIAGLFDAHAQ  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFA---------NAQSNVLNAVNAPARSLL  111
              Q LSAQA  FHD+FV +L  GA++Y   E A         N   NVL AVNAP +++L
Sbjct  61   AYQALSAQALVFHDQFVQMLNAGASSYAAAEAANASPLQVVQNLGQNVLAAVNAPTQAVL  120

Query  112  GHP  114
            G P
Sbjct  121  GRP  123


>gi|339298994|gb|AEJ51104.1| PE-PGRS family protein [Mycobacterium tuberculosis CCDC5180]
Length=1657

 Score = 90.9 bits (224),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 59/109 (55%), Positives = 74/109 (68%), Gaps = 2/109 (1%)

Query  8    PEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGRQCQVLSA  67
            PE + +AA DLA I S +SA+ A AA PTT VV+A  DEVS  IA++F A+ ++ Q LSA
Sbjct  5    PEMMATAAFDLARIGSQVSAASAVAAMPTTEVVAAGADEVSAGIAALFSAHAQEYQALSA  64

Query  68   QASAFHDEFVNLLKTGATAYRNTEFAN--AQSNVLNAVNAPARSLLGHP  114
            QA+AFHD+FV+ L   A  Y  TE AN  A   VL AVNAP ++LLG P
Sbjct  65   QAAAFHDQFVHTLTAAARWYTATEIANAAAMRVVLGAVNAPTQTLLGRP  113


>gi|294994403|ref|ZP_06800094.1| PE-PGRS family protein [Mycobacterium tuberculosis 210]
Length=710

 Score = 90.1 bits (222),  Expect = 6e-16, Method: Compositional matrix adjust.
 Identities = 59/109 (55%), Positives = 74/109 (68%), Gaps = 2/109 (1%)

Query  8    PEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGRQCQVLSA  67
            PE + +AA DLA I S +SA+ A AA PTT VV+A  DEVS  IA++F A+ ++ Q LSA
Sbjct  5    PEMMATAAFDLARIGSQVSAASAVAAMPTTEVVAAGADEVSAGIAALFSAHAQEYQALSA  64

Query  68   QASAFHDEFVNLLKTGATAYRNTEFAN--AQSNVLNAVNAPARSLLGHP  114
            QA+AFHD+FV+ L   A  Y  TE AN  A   VL AVNAP ++LLG P
Sbjct  65   QAAAFHDQFVHTLTAAARWYTATEIANAAAMRVVLGAVNAPTQTLLGRP  113


>gi|297636271|ref|ZP_06954051.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 4207]
Length=439

 Score = 89.4 bits (220),  Expect = 9e-16, Method: Compositional matrix adjust.
 Identities = 60/125 (48%), Positives = 85/125 (68%), Gaps = 0/125 (0%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M F+  +PE + +AA DLA + S +SA+ AAA+ PTT V++A  D+VS AIA++FGA+ +
Sbjct  1    MSFVIAVPEFLSAAATDLANLGSTISAANAAASIPTTGVLAAGADDVSAAIAALFGAHAQ  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHPSAAESV  120
              Q +SAQA+ FH +FV  L  GA AY N E AN Q ++LNA+NAP ++LLG P   +  
Sbjct  61   AYQTISAQAATFHAQFVQTLSAGAGAYANAEAANVQQSLLNAINAPTQALLGRPLIGDGA  120

Query  121  QNSAP  125
              +AP
Sbjct  121  DGTAP  125


>gi|339633594|ref|YP_004725236.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
 gi|340628560|ref|YP_004747012.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
 gi|339332950|emb|CCC28677.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
 gi|340006750|emb|CCC45938.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
Length=448

 Score = 89.4 bits (220),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 60/125 (48%), Positives = 85/125 (68%), Gaps = 0/125 (0%)

Query  1    MQFLSVIPEQVESAAQDLAGIRSALSASYAAAAGPTTAVVSAAEDEVSTAIASIFGAYGR  60
            M F+  +PE + +AA DLA + S +SA+ AAA+ PTT V++A  D+VS AIA++FGA+ +
Sbjct  1    MSFVIAVPEFLSAAATDLANLGSTISAANAAASIPTTGVLAAGADDVSAAIAALFGAHAQ  60

Query  61   QCQVLSAQASAFHDEFVNLLKTGATAYRNTEFANAQSNVLNAVNAPARSLLGHPSAAESV  120
              Q +SAQA+ FH +FV  L  GA AY N E AN Q ++LNA+NAP ++LLG P   +  
Sbjct  61   AYQTISAQAATFHAQFVQTLSAGAGAYANAEAANVQQSLLNAINAPTQALLGRPLIGDGA  120

Query  121  QNSAP  125
              +AP
Sbjct  121  DGTAP  125



Lambda     K      H
   0.314    0.127    0.343 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 740471427550


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40