BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2330c
Length=175
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609467|ref|NP_216846.1| lipoprotein LppP [Mycobacterium tub... 353 6e-96
gi|121638216|ref|YP_978440.1| putative lipoprotein lppP [Mycobac... 352 1e-95
gi|298525814|ref|ZP_07013223.1| lipoprotein lppP [Mycobacterium ... 352 1e-95
gi|167969880|ref|ZP_02552157.1| putative lipoprotein LppP [Mycob... 350 6e-95
gi|289754434|ref|ZP_06513812.1| lipoprotein lppP [Mycobacterium ... 324 3e-87
gi|148823530|ref|YP_001288284.1| lipoprotein lppP [Mycobacterium... 323 4e-87
gi|183983618|ref|YP_001851909.1| lipoprotein LppP [Mycobacterium... 244 5e-63
gi|118617137|ref|YP_905469.1| lipoprotein LppP [Mycobacterium ul... 239 9e-62
gi|41408201|ref|NP_961037.1| LppP [Mycobacterium avium subsp. pa... 239 1e-61
gi|118464896|ref|YP_881292.1| LppP protein [Mycobacterium avium ... 236 7e-61
gi|254774797|ref|ZP_05216313.1| LppP [Mycobacterium avium subsp.... 236 7e-61
gi|342857451|ref|ZP_08714107.1| LppP [Mycobacterium colombiense ... 235 2e-60
gi|254820674|ref|ZP_05225675.1| LppP [Mycobacterium intracellula... 225 2e-57
gi|296166336|ref|ZP_06848772.1| LppP [Mycobacterium parascrofula... 205 2e-51
gi|108800402|ref|YP_640599.1| protein LppP [Mycobacterium sp. MC... 184 3e-45
gi|240170976|ref|ZP_04749635.1| lipoprotein LppP [Mycobacterium ... 176 1e-42
gi|118471872|ref|YP_888748.1| LppP protein [Mycobacterium smegma... 145 2e-33
gi|145223312|ref|YP_001133990.1| LppP [Mycobacterium gilvum PYR-... 124 6e-27
gi|120404767|ref|YP_954596.1| LppP [Mycobacterium vanbaalenii PY... 112 3e-23
gi|226308217|ref|YP_002768177.1| hypothetical protein RER_47300 ... 58.2 5e-07
gi|296140162|ref|YP_003647405.1| lipoprotein LppP [Tsukamurella ... 57.8 6e-07
gi|229488883|ref|ZP_04382749.1| conserved hypothetical protein [... 55.1 4e-06
gi|111021790|ref|YP_704762.1| hypothetical protein RHA1_ro04819 ... 52.8 2e-05
gi|262202208|ref|YP_003273416.1| hypothetical protein Gbro_2275 ... 44.7 0.005
gi|317508262|ref|ZP_07965942.1| hypothetical protein HMPREF9336_... 42.0 0.035
gi|227834151|ref|YP_002835858.1| putative secreted protein [Cory... 40.8 0.075
gi|336178328|ref|YP_004583703.1| hypothetical protein FsymDg_239... 40.0 0.12
gi|86741470|ref|YP_481870.1| hypothetical protein Francci3_2782 ... 40.0 0.14
gi|296394463|ref|YP_003659347.1| hypothetical protein Srot_2060 ... 39.7 0.19
gi|184200420|ref|YP_001854627.1| hypothetical protein KRH_07740 ... 38.9 0.31
gi|326384008|ref|ZP_08205691.1| hypothetical protein SCNU_13784 ... 38.5 0.42
gi|312196278|ref|YP_004016339.1| serine/threonine protein kinase... 37.0 0.98
gi|255325577|ref|ZP_05366677.1| conserved hypothetical protein [... 37.0 1.2
gi|239991502|ref|ZP_04712166.1| hypothetical protein SrosN1_2963... 37.0 1.2
gi|227505859|ref|ZP_03935908.1| conserved hypothetical protein [... 36.6 1.3
gi|227834152|ref|YP_002835859.1| putative secreted protein [Cory... 36.6 1.4
gi|330819062|ref|XP_003291584.1| cystathionine beta-synthase [Di... 36.6 1.4
gi|291448497|ref|ZP_06587887.1| predicted protein [Streptomyces ... 36.6 1.4
gi|262384599|ref|ZP_06077733.1| conserved hypothetical protein [... 36.6 1.4
gi|111223676|ref|YP_714470.1| hypothetical protein FRAAL4277 [Fr... 36.2 1.7
gi|298375136|ref|ZP_06985093.1| conserved hypothetical protein [... 35.8 2.3
gi|325293020|ref|YP_004278884.1| Potassium efflux system kefA [A... 35.4 2.9
gi|121997614|ref|YP_001002401.1| electron transport protein SCO1... 35.0 3.8
gi|168702849|ref|ZP_02735126.1| efflux transporter, RND family, ... 35.0 4.1
gi|288921347|ref|ZP_06415628.1| hypothetical protein FrEUN1fDRAF... 35.0 4.2
gi|159184847|ref|NP_354626.2| potassium efflux system KEFA [Agro... 35.0 4.5
gi|335037262|ref|ZP_08530571.1| potassium efflux system KEFA [Ag... 35.0 4.5
gi|338823015|gb|EGP56983.1| potassium efflux system KEFA [Agroba... 35.0 4.6
gi|86356958|ref|YP_468850.1| hypothetical protein RHE_CH01318 [R... 34.7 5.3
gi|340515481|gb|EGR45735.1| predicted protein [Trichoderma reese... 34.3 8.1
>gi|15609467|ref|NP_216846.1| lipoprotein LppP [Mycobacterium tuberculosis H37Rv]
gi|15841833|ref|NP_336870.1| hypothetical protein MT2392 [Mycobacterium tuberculosis CDC1551]
gi|31793513|ref|NP_856006.1| lipoprotein LppP [Mycobacterium bovis AF2122/97]
63 more sequence titles
Length=175
Score = 353 bits (906), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 174/175 (99%), Positives = 175/175 (100%), Gaps = 0/175 (0%)
Query 1 VRRQRSAVPILALLALLALLALIVGLGASGCAWKPPTTRPSPPNTCKDSDGPTADTVRQA 60
+RRQRSAVPILALLALLALLALIVGLGASGCAWKPPTTRPSPPNTCKDSDGPTADTVRQA
Sbjct 1 MRRQRSAVPILALLALLALLALIVGLGASGCAWKPPTTRPSPPNTCKDSDGPTADTVRQA 60
Query 61 IAAVPIVVPGSKWVEITRGHTRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNP 120
IAAVPIVVPGSKWVEITRGHTRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNP
Sbjct 61 IAAVPIVVPGSKWVEITRGHTRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNP 120
Query 121 KPYITVLPAGDDTVTVQYQWQIGSDQECCPTGIGTVRFHIGSDGKLEALGSIPHQ 175
KPYITVLPAGDDTVTVQYQWQIGSDQECCPTGIGTVRFHIGSDGKLEALGSIPHQ
Sbjct 121 KPYITVLPAGDDTVTVQYQWQIGSDQECCPTGIGTVRFHIGSDGKLEALGSIPHQ 175
>gi|121638216|ref|YP_978440.1| putative lipoprotein lppP [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224990710|ref|YP_002645397.1| putative lipoprotein [Mycobacterium bovis BCG str. Tokyo 172]
gi|121493864|emb|CAL72339.1| Probable lipoprotein lppP [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224773823|dbj|BAH26629.1| putative lipoprotein [Mycobacterium bovis BCG str. Tokyo 172]
gi|341602254|emb|CCC64928.1| probable lipoprotein lppP [Mycobacterium bovis BCG str. Moreau
RDJ]
Length=175
Score = 352 bits (903), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 173/175 (99%), Positives = 175/175 (100%), Gaps = 0/175 (0%)
Query 1 VRRQRSAVPILALLALLALLALIVGLGASGCAWKPPTTRPSPPNTCKDSDGPTADTVRQA 60
+RRQRSAVPILALLALLALLALIVGLGASGCAWKPPTTRPSPPNTCKDSDGPTADTVRQA
Sbjct 1 MRRQRSAVPILALLALLALLALIVGLGASGCAWKPPTTRPSPPNTCKDSDGPTADTVRQA 60
Query 61 IAAVPIVVPGSKWVEITRGHTRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNP 120
IAAVPIVVPGSKWVEITRGHTRNCRLHWVQIIPTIA+QSTPQQLLFFDRNIPLGSPTRNP
Sbjct 61 IAAVPIVVPGSKWVEITRGHTRNCRLHWVQIIPTIAAQSTPQQLLFFDRNIPLGSPTRNP 120
Query 121 KPYITVLPAGDDTVTVQYQWQIGSDQECCPTGIGTVRFHIGSDGKLEALGSIPHQ 175
KPYITVLPAGDDTVTVQYQWQIGSDQECCPTGIGTVRFHIGSDGKLEALGSIPHQ
Sbjct 121 KPYITVLPAGDDTVTVQYQWQIGSDQECCPTGIGTVRFHIGSDGKLEALGSIPHQ 175
>gi|298525814|ref|ZP_07013223.1| lipoprotein lppP [Mycobacterium tuberculosis 94_M4241A]
gi|298495608|gb|EFI30902.1| lipoprotein lppP [Mycobacterium tuberculosis 94_M4241A]
Length=175
Score = 352 bits (903), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 173/175 (99%), Positives = 175/175 (100%), Gaps = 0/175 (0%)
Query 1 VRRQRSAVPILALLALLALLALIVGLGASGCAWKPPTTRPSPPNTCKDSDGPTADTVRQA 60
+RRQRSAVPILALLALLALLALIVGLGASGCAWKPPTTRPSPPNTCKDSDGPTADTVRQA
Sbjct 1 MRRQRSAVPILALLALLALLALIVGLGASGCAWKPPTTRPSPPNTCKDSDGPTADTVRQA 60
Query 61 IAAVPIVVPGSKWVEITRGHTRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNP 120
IAAVPIVVPGSKWVEITRGHTRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNP
Sbjct 61 IAAVPIVVPGSKWVEITRGHTRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNP 120
Query 121 KPYITVLPAGDDTVTVQYQWQIGSDQECCPTGIGTVRFHIGSDGKLEALGSIPHQ 175
KPYITVLPAGDDTVTVQYQWQIGSDQECCPTGIGTVRFHIGS+GKLEALGSIPHQ
Sbjct 121 KPYITVLPAGDDTVTVQYQWQIGSDQECCPTGIGTVRFHIGSNGKLEALGSIPHQ 175
>gi|167969880|ref|ZP_02552157.1| putative lipoprotein LppP [Mycobacterium tuberculosis H37Ra]
Length=175
Score = 350 bits (897), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 173/175 (99%), Positives = 174/175 (99%), Gaps = 0/175 (0%)
Query 1 VRRQRSAVPILALLALLALLALIVGLGASGCAWKPPTTRPSPPNTCKDSDGPTADTVRQA 60
+RRQRSAVPILALLALLALLALIVGL ASGCAWKPPTTRPSPPNTCKDSDGPTADTVRQA
Sbjct 1 MRRQRSAVPILALLALLALLALIVGLCASGCAWKPPTTRPSPPNTCKDSDGPTADTVRQA 60
Query 61 IAAVPIVVPGSKWVEITRGHTRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNP 120
IAAVPIVVPGSKWVEITRGHTRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNP
Sbjct 61 IAAVPIVVPGSKWVEITRGHTRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNP 120
Query 121 KPYITVLPAGDDTVTVQYQWQIGSDQECCPTGIGTVRFHIGSDGKLEALGSIPHQ 175
KPYITVLPAGDDTVTVQYQWQIGSDQECCPTGIGTVRFHIGSDGKLEALGSIPHQ
Sbjct 121 KPYITVLPAGDDTVTVQYQWQIGSDQECCPTGIGTVRFHIGSDGKLEALGSIPHQ 175
>gi|289754434|ref|ZP_06513812.1| lipoprotein lppP [Mycobacterium tuberculosis EAS054]
gi|289695021|gb|EFD62450.1| lipoprotein lppP [Mycobacterium tuberculosis EAS054]
Length=172
Score = 324 bits (831), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 171/175 (98%), Positives = 172/175 (99%), Gaps = 3/175 (1%)
Query 1 VRRQRSAVPILALLALLALLALIVGLGASGCAWKPPTTRPSPPNTCKDSDGPTADTVRQA 60
+RRQRSAVPILALLALLAL IVGLGASGCAWKPPTTRPSPPNTCKDSDGPTADTVRQA
Sbjct 1 MRRQRSAVPILALLALLAL---IVGLGASGCAWKPPTTRPSPPNTCKDSDGPTADTVRQA 57
Query 61 IAAVPIVVPGSKWVEITRGHTRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNP 120
IAAVPIVVPGSKWVEITRGHTRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNP
Sbjct 58 IAAVPIVVPGSKWVEITRGHTRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNP 117
Query 121 KPYITVLPAGDDTVTVQYQWQIGSDQECCPTGIGTVRFHIGSDGKLEALGSIPHQ 175
KPYITVLPAGDDTVTVQYQWQIGSDQECCPTGIGTVRFHIGSDGKLEALGSIPHQ
Sbjct 118 KPYITVLPAGDDTVTVQYQWQIGSDQECCPTGIGTVRFHIGSDGKLEALGSIPHQ 172
>gi|148823530|ref|YP_001288284.1| lipoprotein lppP [Mycobacterium tuberculosis F11]
gi|289447970|ref|ZP_06437714.1| lipoprotein lppP [Mycobacterium tuberculosis CPHL_A]
gi|289745608|ref|ZP_06504986.1| lipoprotein lppP [Mycobacterium tuberculosis 02_1987]
6 more sequence titles
Length=178
Score = 323 bits (829), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 174/178 (98%), Positives = 175/178 (99%), Gaps = 3/178 (1%)
Query 1 VRRQRSAVPILALLALLALLAL---IVGLGASGCAWKPPTTRPSPPNTCKDSDGPTADTV 57
+RRQRSAVPILALLALLALLAL IVGLGASGCAWKPPTTRPSPPNTCKDSDGPTADTV
Sbjct 1 MRRQRSAVPILALLALLALLALLALIVGLGASGCAWKPPTTRPSPPNTCKDSDGPTADTV 60
Query 58 RQAIAAVPIVVPGSKWVEITRGHTRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPT 117
RQAIAAVPIVVPGSKWVEITRGHTRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPT
Sbjct 61 RQAIAAVPIVVPGSKWVEITRGHTRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPT 120
Query 118 RNPKPYITVLPAGDDTVTVQYQWQIGSDQECCPTGIGTVRFHIGSDGKLEALGSIPHQ 175
RNPKPYITVLPAGDDTVTVQYQWQIGSDQECCPTGIGTVRFHIGSDGKLEALGSIPHQ
Sbjct 121 RNPKPYITVLPAGDDTVTVQYQWQIGSDQECCPTGIGTVRFHIGSDGKLEALGSIPHQ 178
>gi|183983618|ref|YP_001851909.1| lipoprotein LppP [Mycobacterium marinum M]
gi|183176944|gb|ACC42054.1| lipoprotein LppP [Mycobacterium marinum M]
Length=167
Score = 244 bits (622), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 117/163 (72%), Positives = 134/163 (83%), Gaps = 0/163 (0%)
Query 13 LLALLALLALIVGLGASGCAWKPPTTRPSPPNTCKDSDGPTADTVRQAIAAVPIVVPGSK 72
L +L +L L++GLGA GC K + P+TCK+SDGPT+ TVRQAIAAVP+ VP S
Sbjct 5 LRVILMILGLVLGLGAPGCGHKSAPRPTTAPDTCKNSDGPTSQTVRQAIAAVPVGVPNST 64
Query 73 WVEITRGHTRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNPKPYITVLPAGDD 132
WVEI RGHT+NCRL+WVQIIPTIAS+STPQQLLFFD N LGSPTRNPKPYI VLP+G D
Sbjct 65 WVEIARGHTKNCRLYWVQIIPTIASESTPQQLLFFDHNTALGSPTRNPKPYIRVLPSGQD 124
Query 133 TVTVQYQWQIGSDQECCPTGIGTVRFHIGSDGKLEALGSIPHQ 175
TVTVQYQW++GSD +CCPTG GTVRF +G DGKLEALG IPHQ
Sbjct 125 TVTVQYQWRVGSDPQCCPTGSGTVRFQVGPDGKLEALGPIPHQ 167
>gi|118617137|ref|YP_905469.1| lipoprotein LppP [Mycobacterium ulcerans Agy99]
gi|118569247|gb|ABL03998.1| lipoprotein LppP [Mycobacterium ulcerans Agy99]
Length=167
Score = 239 bits (611), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 114/163 (70%), Positives = 133/163 (82%), Gaps = 0/163 (0%)
Query 13 LLALLALLALIVGLGASGCAWKPPTTRPSPPNTCKDSDGPTADTVRQAIAAVPIVVPGSK 72
L +L +L L++GLGA GC K + P+TCK+SDGP++ TVRQAIAAVP+ VP S
Sbjct 5 LRVILMILGLVLGLGAPGCGHKSAPRPTTAPDTCKNSDGPSSQTVRQAIAAVPVGVPNST 64
Query 73 WVEITRGHTRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNPKPYITVLPAGDD 132
WVEI RGHT+NCRL+WVQIIPTIAS+S PQQLLFFD N LGSPTRNPKPYI VLP+G D
Sbjct 65 WVEIARGHTKNCRLYWVQIIPTIASESAPQQLLFFDHNTALGSPTRNPKPYIRVLPSGQD 124
Query 133 TVTVQYQWQIGSDQECCPTGIGTVRFHIGSDGKLEALGSIPHQ 175
TVTVQYQW++GSD +CCPTG GTVRF +G DGKL+ALG IPHQ
Sbjct 125 TVTVQYQWRVGSDPQCCPTGSGTVRFQVGPDGKLKALGPIPHQ 167
>gi|41408201|ref|NP_961037.1| LppP [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41396556|gb|AAS04420.1| LppP [Mycobacterium avium subsp. paratuberculosis K-10]
Length=160
Score = 239 bits (609), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 115/157 (74%), Positives = 130/157 (83%), Gaps = 0/157 (0%)
Query 19 LLALIVGLGASGCAWKPPTTRPSPPNTCKDSDGPTADTVRQAIAAVPIVVPGSKWVEITR 78
L+ +++ L ASGC WKPP + P+TCK SDGPTADTVRQAI AVPI +PG+ WVEI R
Sbjct 4 LIVMVLVLLASGCGWKPPAPPQARPDTCKASDGPTADTVRQAITAVPIAIPGTIWVEIGR 63
Query 79 GHTRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNPKPYITVLPAGDDTVTVQY 138
GHTRNCRLHWVQIIPTIAS+STPQQLLFFD N PLG+ T N KPYITVLP DDTVTVQY
Sbjct 64 GHTRNCRLHWVQIIPTIASESTPQQLLFFDHNTPLGTATPNAKPYITVLPPSDDTVTVQY 123
Query 139 QWQIGSDQECCPTGIGTVRFHIGSDGKLEALGSIPHQ 175
QWQ G+DQ CCPTGIGTV+F IG DGKL+ +G IP+Q
Sbjct 124 QWQKGNDQLCCPTGIGTVKFRIGPDGKLQTIGKIPNQ 160
>gi|118464896|ref|YP_881292.1| LppP protein [Mycobacterium avium 104]
gi|118166183|gb|ABK67080.1| LppP protein [Mycobacterium avium 104]
Length=155
Score = 236 bits (603), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 114/154 (75%), Positives = 128/154 (84%), Gaps = 0/154 (0%)
Query 22 LIVGLGASGCAWKPPTTRPSPPNTCKDSDGPTADTVRQAIAAVPIVVPGSKWVEITRGHT 81
+++ L ASGC WKPP + P+TCK SDGPTADTVRQAI AVPI +PG+ WVEI RGHT
Sbjct 2 MVLVLLASGCGWKPPAPPQARPDTCKASDGPTADTVRQAITAVPIAIPGTIWVEIGRGHT 61
Query 82 RNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNPKPYITVLPAGDDTVTVQYQWQ 141
RNCRLHWVQIIPTIAS+STPQQLLFFD N PLG+ T N KPYITVLP DDTVTVQYQWQ
Sbjct 62 RNCRLHWVQIIPTIASESTPQQLLFFDHNTPLGTATPNAKPYITVLPPSDDTVTVQYQWQ 121
Query 142 IGSDQECCPTGIGTVRFHIGSDGKLEALGSIPHQ 175
G+DQ CCPTGIGTV+F IG DGKL+ +G IP+Q
Sbjct 122 KGNDQLCCPTGIGTVKFRIGPDGKLQTIGKIPNQ 155
>gi|254774797|ref|ZP_05216313.1| LppP [Mycobacterium avium subsp. avium ATCC 25291]
gi|336461718|gb|EGO40580.1| hypothetical protein MAPs_28090 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=154
Score = 236 bits (603), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 114/154 (75%), Positives = 128/154 (84%), Gaps = 0/154 (0%)
Query 22 LIVGLGASGCAWKPPTTRPSPPNTCKDSDGPTADTVRQAIAAVPIVVPGSKWVEITRGHT 81
+++ L ASGC WKPP + P+TCK SDGPTADTVRQAI AVPI +PG+ WVEI RGHT
Sbjct 1 MVLVLLASGCGWKPPAPPQARPDTCKASDGPTADTVRQAITAVPIAIPGTIWVEIGRGHT 60
Query 82 RNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNPKPYITVLPAGDDTVTVQYQWQ 141
RNCRLHWVQIIPTIAS+STPQQLLFFD N PLG+ T N KPYITVLP DDTVTVQYQWQ
Sbjct 61 RNCRLHWVQIIPTIASESTPQQLLFFDHNTPLGTATPNAKPYITVLPPSDDTVTVQYQWQ 120
Query 142 IGSDQECCPTGIGTVRFHIGSDGKLEALGSIPHQ 175
G+DQ CCPTGIGTV+F IG DGKL+ +G IP+Q
Sbjct 121 KGNDQLCCPTGIGTVKFRIGPDGKLQTIGKIPNQ 154
>gi|342857451|ref|ZP_08714107.1| LppP [Mycobacterium colombiense CECT 3035]
gi|342134784|gb|EGT87950.1| LppP [Mycobacterium colombiense CECT 3035]
Length=160
Score = 235 bits (599), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 116/157 (74%), Positives = 131/157 (84%), Gaps = 0/157 (0%)
Query 19 LLALIVGLGASGCAWKPPTTRPSPPNTCKDSDGPTADTVRQAIAAVPIVVPGSKWVEITR 78
L+ + + L ASGC WKPP + P TCKDSDGPTADTVR+AI AVPI VPG+ WVE+ R
Sbjct 4 LIVIFLVLLASGCGWKPPAPPQARPATCKDSDGPTADTVRRAITAVPIAVPGTIWVEMGR 63
Query 79 GHTRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNPKPYITVLPAGDDTVTVQY 138
GHTRNCRLHWVQIIPTIAS+S+PQQLLFFD N PLGSPT NPKPYITVLP +DTVTVQY
Sbjct 64 GHTRNCRLHWVQIIPTIASESSPQQLLFFDHNTPLGSPTPNPKPYITVLPPSEDTVTVQY 123
Query 139 QWQIGSDQECCPTGIGTVRFHIGSDGKLEALGSIPHQ 175
QWQ G+DQ CCPTGIGTV+F IG DGKL+ LG +P+Q
Sbjct 124 QWQKGNDQLCCPTGIGTVKFRIGPDGKLQTLGKVPNQ 160
>gi|254820674|ref|ZP_05225675.1| LppP [Mycobacterium intracellulare ATCC 13950]
Length=155
Score = 225 bits (573), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/154 (71%), Positives = 126/154 (82%), Gaps = 0/154 (0%)
Query 22 LIVGLGASGCAWKPPTTRPSPPNTCKDSDGPTADTVRQAIAAVPIVVPGSKWVEITRGHT 81
+++ L A GC K PT + P+TCK SDGPTADTVRQAI AVPI +PG+ WVEI RGHT
Sbjct 2 IVLVLLACGCGGKAPTPPQAKPDTCKASDGPTADTVRQAITAVPIAIPGTIWVEIGRGHT 61
Query 82 RNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNPKPYITVLPAGDDTVTVQYQWQ 141
RNCRL WVQIIPTIA++STPQQLLFFD N PLG+ T NPKPYITVLP DDTVTVQYQWQ
Sbjct 62 RNCRLSWVQIIPTIANESTPQQLLFFDHNRPLGTATPNPKPYITVLPPSDDTVTVQYQWQ 121
Query 142 IGSDQECCPTGIGTVRFHIGSDGKLEALGSIPHQ 175
G+DQ CCP+GIGTV+F IG DGKL+ +G +P+Q
Sbjct 122 KGNDQLCCPSGIGTVKFRIGPDGKLQTVGKVPNQ 155
>gi|296166336|ref|ZP_06848772.1| LppP [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295898299|gb|EFG77869.1| LppP [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=156
Score = 205 bits (522), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/160 (64%), Positives = 121/160 (76%), Gaps = 4/160 (2%)
Query 16 LLALLALIVGLGASGCAWKPPTTRPSPPNTCKDSDGPTADTVRQAIAAVPIVVPGSKWVE 75
++ LL L+V GC K + P+ CKDSDGPT +TV++AIA+VPI VPG+ WVE
Sbjct 1 MVILLILLV----CGCGGKHAGPPAAAPDKCKDSDGPTPETVQRAIASVPITVPGTTWVE 56
Query 76 ITRGHTRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNPKPYITVLPAGDDTVT 135
I RGH + CRL+WVQ+IPTIAS+ST QQLLFFD N PLG+PT NPKPYITVLP DD V
Sbjct 57 IARGHAKKCRLYWVQVIPTIASESTGQQLLFFDHNKPLGTPTPNPKPYITVLPPSDDAVA 116
Query 136 VQYQWQIGSDQECCPTGIGTVRFHIGSDGKLEALGSIPHQ 175
VQY+W G +Q CCPTGIGTV+F IG DGKL+ LG IP+Q
Sbjct 117 VQYRWLKGGEQPCCPTGIGTVKFEIGPDGKLKTLGKIPNQ 156
>gi|108800402|ref|YP_640599.1| protein LppP [Mycobacterium sp. MCS]
gi|119869531|ref|YP_939483.1| protein LppP [Mycobacterium sp. KMS]
gi|126436025|ref|YP_001071716.1| protein LppP [Mycobacterium sp. JLS]
gi|108770821|gb|ABG09543.1| LppP [Mycobacterium sp. MCS]
gi|119695620|gb|ABL92693.1| LppP [Mycobacterium sp. KMS]
gi|126235825|gb|ABN99225.1| LppP [Mycobacterium sp. JLS]
Length=162
Score = 184 bits (468), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 87/158 (56%), Positives = 111/158 (71%), Gaps = 2/158 (1%)
Query 19 LLALIVGLG--ASGCAWKPPTTRPSPPNTCKDSDGPTADTVRQAIAAVPIVVPGSKWVEI 76
+LA++V G +GC W PP P P+TC +DGPT DTV++ I+ P PG+ W E+
Sbjct 4 VLAVLVSAGVLTAGCGWSPPGAAPPKPDTCTPADGPTPDTVQREISGTPPAAPGATWTEV 63
Query 77 TRGHTRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNPKPYITVLPAGDDTVTV 136
GHT +CRL+WVQI PT A+ +PQQ+LFF N PLG T +P+PYI+VLP G+DTV V
Sbjct 64 ANGHTTDCRLYWVQIGPTAAAPDSPQQVLFFAGNTPLGPATPDPRPYISVLPTGEDTVQV 123
Query 137 QYQWQIGSDQECCPTGIGTVRFHIGSDGKLEALGSIPH 174
QYQW+ + CCPTGIGTVRF IG DGKLEA+ IP+
Sbjct 124 QYQWRQSDEPPCCPTGIGTVRFRIGGDGKLEAVDPIPN 161
>gi|240170976|ref|ZP_04749635.1| lipoprotein LppP [Mycobacterium kansasii ATCC 12478]
Length=102
Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/101 (81%), Positives = 91/101 (91%), Gaps = 0/101 (0%)
Query 74 VEITRGHTRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNPKPYITVLPAGDDT 133
+EI RGHTR CRL+WVQIIPTIAS+STPQQLLFFDRN PLGSPT +PKPYITVLP GDDT
Sbjct 1 MEIARGHTRKCRLYWVQIIPTIASESTPQQLLFFDRNTPLGSPTPDPKPYITVLPPGDDT 60
Query 134 VTVQYQWQIGSDQECCPTGIGTVRFHIGSDGKLEALGSIPH 174
VTVQY+W++G D ECCP+G+GTVRF IG DGKL+ALG IPH
Sbjct 61 VTVQYRWRVGGDPECCPSGMGTVRFQIGLDGKLKALGPIPH 101
>gi|118471872|ref|YP_888748.1| LppP protein [Mycobacterium smegmatis str. MC2 155]
gi|118173159|gb|ABK74055.1| LppP protein [Mycobacterium smegmatis str. MC2 155]
Length=159
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/157 (50%), Positives = 102/157 (65%), Gaps = 0/157 (0%)
Query 17 LALLALIVGLGASGCAWKPPTTRPSPPNTCKDSDGPTADTVRQAIAAVPIVVPGSKWVEI 76
++++ + +G A+GC W P + P PP+TC +DGP V Q IA +P GS+WV++
Sbjct 1 MSVVVVSLGFLAAGCGWGPSSAPPPPPDTCTAADGPDPMVVAQEIAKLPAPHGGSQWVQV 60
Query 77 TRGHTRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNPKPYITVLPAGDDTVTV 136
GHT +CRLHWVQ+ T ++ QLLFFDR PLG+ T P+PYI V+ G+DTVTV
Sbjct 61 RDGHTTDCRLHWVQVGLTDPQPNSVGQLLFFDRQTPLGTATPEPRPYINVVNNGEDTVTV 120
Query 137 QYQWQIGSDQECCPTGIGTVRFHIGSDGKLEALGSIP 173
YQWQ G D PTGI TVRF IG DG+L A+ +P
Sbjct 121 NYQWQQGEDTPEAPTGIATVRFRIGDDGRLVAVDPLP 157
>gi|145223312|ref|YP_001133990.1| LppP [Mycobacterium gilvum PYR-GCK]
gi|315443772|ref|YP_004076651.1| hypothetical protein Mspyr1_21630 [Mycobacterium sp. Spyr1]
gi|145215798|gb|ABP45202.1| LppP [Mycobacterium gilvum PYR-GCK]
gi|315262075|gb|ADT98816.1| hypothetical protein Mspyr1_21630 [Mycobacterium sp. Spyr1]
Length=160
Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/154 (43%), Positives = 90/154 (59%), Gaps = 9/154 (5%)
Query 23 IVGLGASGCAWKPPTTRPSPPNTCKDSD-GPTADTVRQAIAAVPIVVPGSKWVEITRGHT 81
+V L S C W PP P+P +T + GPT QA+ + ++P W E RG
Sbjct 15 LVMLAVSACGWSPPA--PAPTSTAAECGPGPT----EQAVESEYALLPAGAWRETARGSA 68
Query 82 RNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNPKPYITVLPAGDDTVTVQYQWQ 141
+CRL WV ++ + +PQQ+LFFD P+GSPT +P+PYITV G+ VQYQW+
Sbjct 69 ADCRLQWV-VVSSGDQPDSPQQVLFFDDGAPVGSPTMDPRPYITVTAQGERDAVVQYQWR 127
Query 142 IGSDQECCPTGIGTVRFHIGSDGKLEALGSIPHQ 175
G D+ CCPTGIGT R + DG+L L IP++
Sbjct 128 QGGDEPCCPTGIGTARVTL-EDGRLTVLDPIPNE 160
>gi|120404767|ref|YP_954596.1| LppP [Mycobacterium vanbaalenii PYR-1]
gi|119957585|gb|ABM14590.1| LppP [Mycobacterium vanbaalenii PYR-1]
Length=155
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/155 (43%), Positives = 90/155 (59%), Gaps = 8/155 (5%)
Query 19 LLALIVGLGASGCAWKPPTTRPSPPNTCKDSDGPTADTVRQAIAAVPIVVPGSKWVEITR 78
++AL+ SGC W PP P+ + GP AD V IA ++P ++W E R
Sbjct 7 VVALVTVAALSGCGWSPPAPPPTS-TAAECGPGPAADVVAAEIA----MLPPAEWEETER 61
Query 79 GHTRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNPKPYITVLPAGDDTVTVQY 138
GH+ +CRL+WV + + PQQ+LFFD P+GSPT P+ +ITV+P G VQY
Sbjct 62 GHSADCRLNWVVV--SSGHFDAPQQVLFFDGTEPVGSPTPEPRRFITVIPQGRSDAVVQY 119
Query 139 QWQIGSDQECCPTGIGTVRFHIGSDGKLEALGSIP 173
QW+ G D+ CCPTGIGT R + +G+L L IP
Sbjct 120 QWRQGQDEPCCPTGIGTARVTL-EEGRLTILDPIP 153
>gi|226308217|ref|YP_002768177.1| hypothetical protein RER_47300 [Rhodococcus erythropolis PR4]
gi|226187334|dbj|BAH35438.1| hypothetical protein RER_47300 [Rhodococcus erythropolis PR4]
Length=144
Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/123 (33%), Positives = 56/123 (46%), Gaps = 9/123 (7%)
Query 36 PTTRPSPPNT--CKDSDGPTADTVRQAIAAVPIVVPGSKWV--EITRGHTRNC-RLHWVQ 90
P T P+ P + C D D P V AI + V G W+ + NC L WV
Sbjct 2 PATTPAVPASGPCLDVDSPV---VTDAIGTLGTDVNGGSWIPRSASEEQIGNCPDLLWVS 58
Query 91 IIPTIASQSTPQ-QLLFFDRNIPLGSPTRNPKPYITVLPAGDDTVTVQYQWQIGSDQECC 149
+ +T Q +LFF LG+ T P Y V+ + ++V+VQY+W + D CC
Sbjct 59 VDGDGVGDATYQSHVLFFHDGTYLGTATSKPYSYTHVIDSNKNSVSVQYRWLLDDDAFCC 118
Query 150 PTG 152
P G
Sbjct 119 PQG 121
>gi|296140162|ref|YP_003647405.1| lipoprotein LppP [Tsukamurella paurometabola DSM 20162]
gi|296028296|gb|ADG79066.1| lipoprotein LppP [Tsukamurella paurometabola DSM 20162]
Length=175
Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (46%), Gaps = 1/120 (0%)
Query 55 DTVRQAIAAVPIVVPGSKWVEITRGHTRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLG 114
+ + A+ V PG W G + +C L+WV++ + S+P Q+L FD G
Sbjct 51 NVIDDAVRTVAPPFPGVAWQVGAMGGSVDCTLNWVRLDTPQGTASSPVQILSFDHRKFAG 110
Query 115 SPTRNPKPYITVL-PAGDDTVTVQYQWQIGSDQECCPTGIGTVRFHIGSDGKLEALGSIP 173
+PT+ Y +V+ AG +TV++ W SD P+G VRF L IP
Sbjct 111 TPTKRANAYTSVVGSAGPGQITVRFAWLEPSDPNAAPSGRADVRFQTMPQSPPRPLDPIP 170
>gi|229488883|ref|ZP_04382749.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|229324387|gb|EEN90142.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=219
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query 57 VRQAIAAVPIVVPGSKWV--EITRGHTRNC-RLHWVQIIPTIASQSTPQ-QLLFFDRNIP 112
V AI + + G W+ + NC L WV + +T Q +LFF
Sbjct 97 VTDAIGTLGTDINGGNWIPRSASEEQIGNCPDLLWVSVDGDGVGDATYQSHVLFFHDGTY 156
Query 113 LGSPTRNPKPYITVLPAGDDTVTVQYQWQIGSDQECCPTG 152
LG+ T P Y V+ + D+V+VQY+W + D CCP G
Sbjct 157 LGTATSEPYSYTHVIDSNKDSVSVQYRWLLDDDAFCCPQG 196
>gi|111021790|ref|YP_704762.1| hypothetical protein RHA1_ro04819 [Rhodococcus jostii RHA1]
gi|110821320|gb|ABG96604.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=183
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/99 (33%), Positives = 46/99 (47%), Gaps = 3/99 (3%)
Query 57 VRQAIAAVPIVVPGSKWVEITRGHTR--NC-RLHWVQIIPTIASQSTPQQLLFFDRNIPL 113
V A A++ G WV T +C L W + + S+P Q+LFF L
Sbjct 56 VTDAFASLGNAPGGDPWVPGTASDAAGGDCPALLWATAETPMGTVSSPTQVLFFHDGAYL 115
Query 114 GSPTRNPKPYITVLPAGDDTVTVQYQWQIGSDQECCPTG 152
G+ T Y V+ + D+V+VQY+W D CCP+G
Sbjct 116 GTATAESYAYTRVVESTGDSVSVQYRWLGEQDANCCPSG 154
>gi|262202208|ref|YP_003273416.1| hypothetical protein Gbro_2275 [Gordonia bronchialis DSM 43247]
gi|262085555|gb|ACY21523.1| hypothetical protein Gbro_2275 [Gordonia bronchialis DSM 43247]
Length=221
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/134 (29%), Positives = 53/134 (40%), Gaps = 2/134 (1%)
Query 28 ASGCAWKPPTTRPSPPNTCK-DSDGPTADTVRQAIAAVPIVVPGSKWVEITRGHTRNCR- 85
ASG TT SP C +S A + +P P WV + C
Sbjct 67 ASGTDSPAATTDASPHANCSTESTEAIASATARIAGPLPTTNPDVPWVFGGATNYNTCND 126
Query 86 LHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNPKPYITVLPAGDDTVTVQYQWQIGSD 145
L + + A+ S+P QLL F R + +G+ R Y V A + V V Y++ G D
Sbjct 127 LSYATLDTQGATASSPNQLLLFHRGVFVGTGVRCNLAYQRVTGASTEAVYVNYRYLRGDD 186
Query 146 QECCPTGIGTVRFH 159
P+G V F
Sbjct 187 ASAAPSGSVDVSFE 200
>gi|317508262|ref|ZP_07965942.1| hypothetical protein HMPREF9336_02314 [Segniliparus rugosus ATCC
BAA-974]
gi|316253437|gb|EFV12827.1| hypothetical protein HMPREF9336_02314 [Segniliparus rugosus ATCC
BAA-974]
Length=189
Score = 42.0 bits (97), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/129 (28%), Positives = 56/129 (44%), Gaps = 9/129 (6%)
Query 52 PTADTVRQAIAAVP--IVVPGSKWVEITRGHTRNCRLHWVQIIPTIASQS--TPQQLLFF 107
P A VR A+ ++P P +W + G C ++ + P+Q+LFF
Sbjct 54 PDAPEVRAAVGSLPPPERAPAERWSQSYTGRYDRCGALTAVVVSLEGEKDPLGPRQVLFF 113
Query 108 DRNIPLGSPTRNPKPY--ITVLPAGDDTVTVQYQWQIGSDQECCPTGIGTVRFHIGSDGK 165
+G T +P + V A DTV VQY+W G + TG+ +++H D K
Sbjct 114 HDGGFVG--TADPCAFGPTEVKSARGDTVVVQYRWPRGQETVTTMTGLANIKYHWIGD-K 170
Query 166 LEALGSIPH 174
+ + IP
Sbjct 171 VVRVNQIPQ 179
>gi|227834151|ref|YP_002835858.1| putative secreted protein [Corynebacterium aurimucosum ATCC 700975]
gi|262183361|ref|ZP_06042782.1| putative secreted protein [Corynebacterium aurimucosum ATCC 700975]
gi|227455167|gb|ACP33920.1| putative secreted protein [Corynebacterium aurimucosum ATCC 700975]
Length=162
Score = 40.8 bits (94), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/91 (27%), Positives = 35/91 (39%), Gaps = 2/91 (2%)
Query 70 GSKWVEITRGHTRNCR-LHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNPKPYI-TVL 127
G +W + H C L W I A+ S+P ++ F LG+ T P + V
Sbjct 54 GHEWALVDSSHFDPCAALSWQTISIEGATASSPHHIMLFHYGEYLGTATAEPYGFFPDVE 113
Query 128 PAGDDTVTVQYQWQIGSDQECCPTGIGTVRF 158
+ ++V Y W D PTG F
Sbjct 114 QVNGNEISVTYHWPQEGDANAAPTGTSKANF 144
>gi|336178328|ref|YP_004583703.1| hypothetical protein FsymDg_2398 [Frankia symbiont of Datisca
glomerata]
gi|334859308|gb|AEH09782.1| hypothetical protein FsymDg_2398 [Frankia symbiont of Datisca
glomerata]
Length=198
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/67 (36%), Positives = 31/67 (47%), Gaps = 1/67 (1%)
Query 94 TIASQSTPQQLLFFDRNIPLGSPTRNPKPYITVLPAGDDTVTVQYQWQIGSDQECCPT-G 152
T A PQQ F +G+ T+ P + L + DD V + YQ D CCPT G
Sbjct 96 TAAVDGHPQQAFLFHHGRLVGTDTQLPSATVEWLWSTDDVVALSYQLYRPDDPLCCPTGG 155
Query 153 IGTVRFH 159
TVR+
Sbjct 156 AATVRYQ 162
>gi|86741470|ref|YP_481870.1| hypothetical protein Francci3_2782 [Frankia sp. CcI3]
gi|86568332|gb|ABD12141.1| hypothetical protein Francci3_2782 [Frankia sp. CcI3]
Length=181
Score = 40.0 bits (92), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/82 (31%), Positives = 38/82 (47%), Gaps = 1/82 (1%)
Query 79 GHTRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNPKPYITVLPAGDDTVTVQY 138
G+ R+ L + + + + PQ+ FF R +G + P I + + D V +QY
Sbjct 76 GYDRSNDLSVIVGLLSTSGDGHPQRAFFFHRGRFIGYDSPQPSATIRWIWSTDRVVALQY 135
Query 139 QWQIGSDQECCPT-GIGTVRFH 159
SD CCPT G TVR+
Sbjct 136 DLYRPSDPMCCPTAGGATVRYQ 157
>gi|296394463|ref|YP_003659347.1| hypothetical protein Srot_2060 [Segniliparus rotundus DSM 44985]
gi|296181610|gb|ADG98516.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985]
Length=152
Score = 39.7 bits (91), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (50%), Gaps = 1/75 (1%)
Query 101 PQQLLFFDRNIPLGSPTRNPKPYITVLPAGDDTVTVQYQWQIGSDQECCPTGIGTVRFHI 160
P+Q+LFF + +G+ +V A DTV VQY+W G + +G +++
Sbjct 70 PRQVLFFHKGAFVGTADSCAFGRASVKSARGDTVLVQYRWPRGQESATTMSGSANIKYRW 129
Query 161 GSDGKLEALGSIPHQ 175
D ++E + IP +
Sbjct 130 SGD-RVERIDQIPQE 143
>gi|184200420|ref|YP_001854627.1| hypothetical protein KRH_07740 [Kocuria rhizophila DC2201]
gi|183580650|dbj|BAG29121.1| hypothetical protein [Kocuria rhizophila DC2201]
Length=214
Score = 38.9 bits (89), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/94 (26%), Positives = 41/94 (44%), Gaps = 6/94 (6%)
Query 86 LHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNP---KPYITVLPAGDDTVTVQYQWQI 142
L W+ + A+ S+P+ ++ F I LG+ + P +P + L D + V Y++ +
Sbjct 123 LSWISVSTNGATASSPETIMLFSHGIFLGTASTTPFGFEPKVERL--DDANLRVTYRYPL 180
Query 143 GSDQECCPTGIGTVRFHIGSD-GKLEALGSIPHQ 175
D P G F+ D G + G P Q
Sbjct 181 EGDANAAPRGRAVSEFYYDEDSGSVVHTGEFPPQ 214
>gi|326384008|ref|ZP_08205691.1| hypothetical protein SCNU_13784 [Gordonia neofelifaecis NRRL
B-59395]
gi|326197168|gb|EGD54359.1| hypothetical protein SCNU_13784 [Gordonia neofelifaecis NRRL
B-59395]
Length=229
Score = 38.5 bits (88), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/75 (35%), Positives = 37/75 (50%), Gaps = 5/75 (6%)
Query 81 TRNCRLHWVQIIPTIASQST-PQQLLFFDRNIPLGSPTRNPKPYITVLPAGD--DTVTVQ 137
+ C L W+Q+ + + +T ++L F LG T P Y AGD D+VTV+
Sbjct 133 SDGCGLDWMQVNGSGFNDATYTSRVLLFAAGEFLG--TVEPHEYSYTSIAGDTLDSVTVR 190
Query 138 YQWQIGSDQECCPTG 152
Y+W D CCP G
Sbjct 191 YRWLRPDDPFCCPQG 205
>gi|312196278|ref|YP_004016339.1| serine/threonine protein kinase [Frankia sp. EuI1c]
gi|311227614|gb|ADP80469.1| serine/threonine protein kinase [Frankia sp. EuI1c]
Length=594
Score = 37.0 bits (84), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/58 (33%), Positives = 25/58 (44%), Gaps = 0/58 (0%)
Query 102 QQLLFFDRNIPLGSPTRNPKPYITVLPAGDDTVTVQYQWQIGSDQECCPTGIGTVRFH 159
Q+ F LG T P I V+ V ++Y D +CCPTG VRF+
Sbjct 511 QRAFVFTDTEFLGYDTSQPSRQIKVIATTKSYVVLEYGTFAADDPDCCPTGTARVRFN 568
>gi|255325577|ref|ZP_05366677.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
SK141]
gi|255297365|gb|EET76682.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
SK141]
Length=181
Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/122 (28%), Positives = 48/122 (40%), Gaps = 21/122 (17%)
Query 37 TTRPSPPNTCKDSD--GPTADTVRQAIAA---------VPIVVPGSKWVEI------TRG 79
TTRP PPN D + P ADT AA + V P W I + G
Sbjct 26 TTRPVPPNVVMDDEQPSPEADTTSSCGAADAQTAFSEGISQVAP---WGTIGWELFDSSG 82
Query 80 HTRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNPKPYI-TVLPAGDDTVTVQY 138
+ L W ++ + S+P ++ F+ LG+ T P + T+ D + V Y
Sbjct 83 YDPCASLSWETLMIEGGTSSSPFHIMLFNHGEYLGTATAKPYGFAPTIERVSDSEIAVTY 142
Query 139 QW 140
W
Sbjct 143 HW 144
>gi|239991502|ref|ZP_04712166.1| hypothetical protein SrosN1_29632 [Streptomyces roseosporus NRRL
11379]
Length=220
Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/99 (29%), Positives = 42/99 (43%), Gaps = 19/99 (19%)
Query 77 TRGHTRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNPKPYITVLPAGDDT--- 133
T G T + RL W ++ A + +L+ T +P+ Y +G D
Sbjct 127 TGGQTGSGRLAWAYVV--FAGEQGRLRLVG----------TVSPRKYEGGHASGFDDIVL 174
Query 134 ----VTVQYQWQIGSDQECCPTGIGTVRFHIGSDGKLEA 168
VTV+ W G D CCP+G + +G+DG L A
Sbjct 175 ASGRVTVEETWHRGMDPSCCPSGKAVTVWRVGADGLLTA 213
>gi|227505859|ref|ZP_03935908.1| conserved hypothetical protein [Corynebacterium striatum ATCC
6940]
gi|227197557|gb|EEI77605.1| conserved hypothetical protein [Corynebacterium striatum ATCC
6940]
Length=163
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/119 (25%), Positives = 45/119 (38%), Gaps = 5/119 (4%)
Query 36 PTTRPSPPNTCKDSDGPTADTVRQAIAAVPIVVPGSKWVEITRGHTRNC-RLHWVQIIPT 94
P + P C+ + A IA +P G W + H C L W I
Sbjct 23 PEEAQASPVVCEAGNAQAA--FNDNIAQIP-QWNGHNWKVVDSSHFDPCAELSWQTISVE 79
Query 95 IASQSTPQQLLFFDRNIPLGSPTRNPKPYI-TVLPAGDDTVTVQYQWQIGSDQECCPTG 152
+ S+P+ ++ F LG+ T P + +V + ++V Y W D PTG
Sbjct 80 GGTASSPRHIMLFHYGQYLGTATAEPYGFFPSVERINGNEISVTYHWPQEGDANAAPTG 138
>gi|227834152|ref|YP_002835859.1| putative secreted protein [Corynebacterium aurimucosum ATCC 700975]
gi|262183360|ref|ZP_06042781.1| putative secreted protein [Corynebacterium aurimucosum ATCC 700975]
gi|227455168|gb|ACP33921.1| putative secreted protein [Corynebacterium aurimucosum ATCC 700975]
Length=203
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/111 (25%), Positives = 47/111 (43%), Gaps = 9/111 (8%)
Query 34 KPPTTRPSPPNTCKDSDGPTADTVRQAIAAVPIVVP--GSKWVEITRGHTRNC-RLHWVQ 90
+ P ++ P +C+D D A+ Q+ + + P G W + C L W+
Sbjct 62 QSPASKTEEPESCEDID---AEEAYQS--GIGTIAPWNGFGWGRPSSSEFDPCADLSWLI 116
Query 91 IIPTIASQSTPQQLLFFDRNIPLGSPTRNPKPYI-TVLPAGDDTVTVQYQW 140
I A+ S+P ++ F + LG+ T P + T+ D + V Y W
Sbjct 117 IAIEGATASSPHHIMLFHKGEYLGTATAEPYGFFPTIERVNDAEIAVTYHW 167
>gi|330819062|ref|XP_003291584.1| cystathionine beta-synthase [Dictyostelium purpureum]
gi|325078220|gb|EGC31883.1| cystathionine beta-synthase [Dictyostelium purpureum]
Length=493
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/41 (44%), Positives = 21/41 (52%), Gaps = 0/41 (0%)
Query 27 GASGCAWKPPTTRPSPPNTCKDSDGPTADTVRQAIAAVPIV 67
G S C WKP TT PSP T K+ D + Q I P+V
Sbjct 3 GPSKCTWKPNTTEPSPHTTRKNVKPLIMDNILQNIGNTPLV 43
>gi|291448497|ref|ZP_06587887.1| predicted protein [Streptomyces roseosporus NRRL 15998]
gi|291351444|gb|EFE78348.1| predicted protein [Streptomyces roseosporus NRRL 15998]
Length=225
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/99 (29%), Positives = 42/99 (43%), Gaps = 19/99 (19%)
Query 77 TRGHTRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNPKPYITVLPAGDDT--- 133
T G T + RL W ++ A + +L+ T +P+ Y +G D
Sbjct 132 TGGQTGSGRLAWAYVV--FAGEQGRLRLVG----------TVSPRKYEGGHASGFDDIVL 179
Query 134 ----VTVQYQWQIGSDQECCPTGIGTVRFHIGSDGKLEA 168
VTV+ W G D CCP+G + +G+DG L A
Sbjct 180 ASGRVTVEETWHRGMDPSCCPSGKAVTVWRVGADGLLTA 218
>gi|262384599|ref|ZP_06077733.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262293892|gb|EEY81826.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length=338
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/114 (30%), Positives = 52/114 (46%), Gaps = 12/114 (10%)
Query 14 LALLALLALIVGLGASGCAWKPPTTRPSPPNTCKDSD-GPTADTVRQAIAAVPIVVPGSK 72
L L+ L AL++ + P T +P P N D+D GP D V A+ + S
Sbjct 5 LFLMGLFALLISCKGNVSKNIPQTDKPQPVNLILDTDLGPDYDDV--GAMALMHALADSG 62
Query 73 WVEITRGHTRNCRLHWVQIIPTIASQSTPQQLLFFDR-NIPLGSPTRNPKPYIT 125
V I + N H ++IP I +T +F+R +IP+G+P P +T
Sbjct 63 QVNILAALSSN---HDERVIPCIEVLNT-----YFNRPDIPVGAPKSEPGASLT 108
>gi|111223676|ref|YP_714470.1| hypothetical protein FRAAL4277 [Frankia alni ACN14a]
gi|111151208|emb|CAJ62919.1| hypothetical protein FRAAL4277 [Frankia alni ACN14a]
Length=125
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/82 (29%), Positives = 36/82 (44%), Gaps = 1/82 (1%)
Query 79 GHTRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPTRNPKPYITVLPAGDDTVTVQY 138
G +N L + + + ++ PQ+ FF R +G + I + + D V +QY
Sbjct 20 GFDQNSDLSVIVGLLSTSADGHPQRAFFFHRGTFIGYDSPQSSATIRWIWSTDRVVALQY 79
Query 139 QWQIGSDQECCPT-GIGTVRFH 159
D CCPT G TVR+
Sbjct 80 DLYKPGDPMCCPTAGGATVRYQ 101
>gi|298375136|ref|ZP_06985093.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
gi|298267636|gb|EFI09292.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
Length=338
Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/114 (30%), Positives = 52/114 (46%), Gaps = 12/114 (10%)
Query 14 LALLALLALIVGLGASGCAWKPPTTRPSPPNTCKDSD-GPTADTVRQAIAAVPIVVPGSK 72
L L+ L AL++ + P T +P P N D+D GP D V A+ + S
Sbjct 5 LFLMGLFALLISCKGNVSKNIPQTDKPQPVNLILDTDLGPDYDDV--GAMALMHALADSG 62
Query 73 WVEITRGHTRNCRLHWVQIIPTIASQSTPQQLLFFDR-NIPLGSPTRNPKPYIT 125
V I + N H ++IP I +T +F+R +IP+G+P P +T
Sbjct 63 QVNILATLSSN---HDERVIPCIEVLNT-----YFNRPDIPVGAPKSEPGASLT 108
>gi|325293020|ref|YP_004278884.1| Potassium efflux system kefA [Agrobacterium sp. H13-3]
gi|325060873|gb|ADY64564.1| Potassium efflux system kefA [Agrobacterium sp. H13-3]
Length=884
Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 21/81 (26%), Positives = 44/81 (55%), Gaps = 3/81 (3%)
Query 66 IVVPGSKWVEITRGH-TRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPT--RNPKP 122
I+VP S+++ + G+ T R+ +I ++A +S PQQ++ + P RNP+P
Sbjct 704 IIVPNSEFINSSVGNWTHRNRIMRAEIPVSVAYESDPQQVMDILLELVRTQPPVLRNPEP 763
Query 123 YITVLPAGDDTVTVQYQWQIG 143
++ L GD ++ + ++ +
Sbjct 764 HVEFLRFGDFSLDFELRFHLA 784
>gi|121997614|ref|YP_001002401.1| electron transport protein SCO1/SenC [Halorhodospira halophila
SL1]
gi|121589019|gb|ABM61599.1| electron transport protein SCO1/SenC [Halorhodospira halophila
SL1]
Length=234
Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/94 (32%), Positives = 44/94 (47%), Gaps = 6/94 (6%)
Query 2 RRQRSAVPIL-ALLALLALLALIVGLGASGCAWKPPTTRPSPPNTCKDSDGPTADTVRQ- 59
R QR+ P+ ALLA+ ++LA ++G+G + A +P P T + P AD Q
Sbjct 5 RPQRTTRPLFGALLAIASVLAAVIGVGLAVTALRPDPGIPDIQGTYLEDGRPIADFALQD 64
Query 60 --AIAAVPIVVPGSKWVEITRGHTRNCRLHWVQI 91
P + G KW +T GHT C W +
Sbjct 65 QDGKRFTPTELHG-KWTVLTFGHT-ECPTTWENL 96
>gi|168702849|ref|ZP_02735126.1| efflux transporter, RND family, MFP subunit [Gemmata obscuriglobus
UQM 2246]
Length=413
Score = 35.0 bits (79), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/64 (41%), Positives = 33/64 (52%), Gaps = 13/64 (20%)
Query 14 LALLALLALIVGLGASGCAWKPPTTRPSPPNTCKDSDGPTADTVRQAIAAVPIVVPGSKW 73
+ LL L AL+VGL A GC KPP KD GP TV A P+V P +++
Sbjct 1 MRLLPLFALVVGLSALGCNKKPPA-------QSKDV-GPPKVTV-----AAPLVRPVTEF 47
Query 74 VEIT 77
E+T
Sbjct 48 TELT 51
>gi|288921347|ref|ZP_06415628.1| hypothetical protein FrEUN1fDRAFT_5326 [Frankia sp. EUN1f]
gi|288347258|gb|EFC81554.1| hypothetical protein FrEUN1fDRAFT_5326 [Frankia sp. EUN1f]
Length=178
Score = 35.0 bits (79), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/74 (34%), Positives = 36/74 (49%), Gaps = 3/74 (4%)
Query 101 PQQLLFFDRNIPLGSPTRNPKPYITVLPAGDDTVTVQYQWQIGSDQECCPT-GIGTVRFH 159
PQQ FF++ +G+ T + + + DTV +QY D CCP+ G TVRF
Sbjct 96 PQQAFFFNQGRFVGTDT-VASANVRWVWSTSDTVALQYDLYRPDDPMCCPSAGAATVRFR 154
Query 160 IGSDGKLEALGSIP 173
++AL IP
Sbjct 155 WNGTA-VQALDPIP 167
>gi|159184847|ref|NP_354626.2| potassium efflux system KEFA [Agrobacterium tumefaciens str.
C58]
gi|159140131|gb|AAK87411.2| potassium efflux system KEFA [Agrobacterium tumefaciens str.
C58]
Length=835
Score = 35.0 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 21/81 (26%), Positives = 43/81 (54%), Gaps = 3/81 (3%)
Query 66 IVVPGSKWVEITRGH-TRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPT--RNPKP 122
I+VP S+++ + G+ T R+ +I ++A S PQQ++ + P RNP+P
Sbjct 654 IIVPNSEFINSSVGNWTHRNRIMRAEIPVSVAYDSDPQQVMDILLELVRAQPPVLRNPEP 713
Query 123 YITVLPAGDDTVTVQYQWQIG 143
++ L GD ++ + ++ +
Sbjct 714 HVEFLRFGDFSLDFELRFHLA 734
>gi|335037262|ref|ZP_08530571.1| potassium efflux system KEFA [Agrobacterium sp. ATCC 31749]
gi|333791286|gb|EGL62674.1| potassium efflux system KEFA [Agrobacterium sp. ATCC 31749]
Length=881
Score = 35.0 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 21/81 (26%), Positives = 43/81 (54%), Gaps = 3/81 (3%)
Query 66 IVVPGSKWVEITRGH-TRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPT--RNPKP 122
I+VP S+++ + G+ T R+ +I ++A S PQQ++ + P RNP+P
Sbjct 700 IIVPNSEFINSSVGNWTHRNRIMRAEIPVSVAYDSDPQQVMDILLELVRAQPPVLRNPEP 759
Query 123 YITVLPAGDDTVTVQYQWQIG 143
++ L GD ++ + ++ +
Sbjct 760 HVEFLRFGDFSLDFELRFHLA 780
>gi|338823015|gb|EGP56983.1| potassium efflux system KEFA [Agrobacterium tumefaciens F2]
Length=846
Score = 35.0 bits (79), Expect = 4.6, Method: Composition-based stats.
Identities = 21/81 (26%), Positives = 43/81 (54%), Gaps = 3/81 (3%)
Query 66 IVVPGSKWVEITRGH-TRNCRLHWVQIIPTIASQSTPQQLLFFDRNIPLGSPT--RNPKP 122
I+VP S+++ + G+ T R+ +I ++A S PQQ++ + P RNP+P
Sbjct 667 IIVPNSEFINSSVGNWTHRNRIMRAEIPVSVAYDSDPQQVMDILLELVRAQPPVLRNPEP 726
Query 123 YITVLPAGDDTVTVQYQWQIG 143
++ L GD ++ + ++ +
Sbjct 727 HVEFLRFGDFSLDFELRFHLA 747
>gi|86356958|ref|YP_468850.1| hypothetical protein RHE_CH01318 [Rhizobium etli CFN 42]
gi|86281060|gb|ABC90123.1| hypothetical conserved membrane protein [Rhizobium etli CFN 42]
Length=499
Score = 34.7 bits (78), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/78 (34%), Positives = 36/78 (47%), Gaps = 9/78 (11%)
Query 1 VRRQRSAVPILALLALLALLALIVGLGASGCAWKP---------PTTRPSPPNTCKDSDG 51
+RR RS VP+L L+AL +VG G G +P TR + P SD
Sbjct 342 LRRLRSVVPVLMACVLIALGFRVVGAGLIGTYSRPNVPMADLAREMTRQAEPALVIASDP 401
Query 52 PTADTVRQAIAAVPIVVP 69
A +R + VP+V+P
Sbjct 402 YVAGNMRLQLPHVPVVIP 419
>gi|340515481|gb|EGR45735.1| predicted protein [Trichoderma reesei QM6a]
Length=228
Score = 34.3 bits (77), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 29/84 (35%), Positives = 40/84 (48%), Gaps = 20/84 (23%)
Query 57 VRQAIAAVPIVVP---------GSK-----WVEITRGHTRNCRLHWVQIIPTIASQSTPQ 102
VR AIA+VP+V+P SK W +IT T + WV I+ T A T
Sbjct 123 VRLAIASVPLVLPFRFYLEWPLASKLVLMWWAKITLAET----ISWVNILSTCAVLGTFF 178
Query 103 QLLFFDRNIPLGSPTRNPKPYITV 126
+LL + + P + P+PYI V
Sbjct 179 ELL--GQRLEEMEPPKQPRPYILV 200
Lambda K H
0.320 0.137 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 145800812160
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40