BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2336

Length=322
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|308379173|ref|ZP_07485366.2|  hypothetical protein TMJG_00599 ...   664    0.0   
gi|15609473|ref|NP_216852.1|  hypothetical protein Rv2336 [Mycoba...   662    0.0   
gi|289750942|ref|ZP_06510320.1|  hypothetical protein TBDG_01152 ...   658    0.0   
gi|254365117|ref|ZP_04981163.1|  hypothetical protein TBHG_02275 ...   607    7e-172
gi|298525822|ref|ZP_07013231.1|  conserved hypothetical protein [...   568    3e-160
gi|167969889|ref|ZP_02552166.1|  hypothetical protein MtubH3_1842...   512    2e-143
gi|294994562|ref|ZP_06800253.1|  hypothetical protein Mtub2_08598...   409    3e-112
gi|183983586|ref|YP_001851877.1|  hypothetical protein MMAR_3608 ...  49.3    8e-04 
gi|156101525|ref|XP_001616456.1|  hypothetical protein [Plasmodiu...  37.4    2.9   
gi|333900378|ref|YP_004474251.1|  methyl-accepting chemotaxis sen...  37.0    3.8   
gi|296803701|ref|XP_002842703.1|  conserved hypothetical protein ...  37.0    4.1   
gi|145636058|ref|ZP_01791728.1|  ribonuclease G [Haemophilus infl...  36.2    8.0   


>gi|308379173|ref|ZP_07485366.2| hypothetical protein TMJG_00599 [Mycobacterium tuberculosis SUMu010]
 gi|308357936|gb|EFP46787.1| hypothetical protein TMJG_00599 [Mycobacterium tuberculosis SUMu010]
Length=344

 Score =  664 bits (1712),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 322/322 (100%), Positives = 322/322 (100%), Gaps = 0/322 (0%)

Query  1    MDVPHEQPALSSSKSNRFTSQRQTTGVGTTTVERLEPRLSPASRHITEAKAFGTECHVSS  60
            MDVPHEQPALSSSKSNRFTSQRQTTGVGTTTVERLEPRLSPASRHITEAKAFGTECHVSS
Sbjct  23   MDVPHEQPALSSSKSNRFTSQRQTTGVGTTTVERLEPRLSPASRHITEAKAFGTECHVSS  82

Query  61   FTREQDPDRAVRVEQIHGEAYVAAGHVYESALDELGRLDNSNAEFILDKARGSTRETEVI  120
            FTREQDPDRAVRVEQIHGEAYVAAGHVYESALDELGRLDNSNAEFILDKARGSTRETEVI
Sbjct  83   FTREQDPDRAVRVEQIHGEAYVAAGHVYESALDELGRLDNSNAEFILDKARGSTRETEVI  142

Query  121  YLHAVPAEPLSGSQGEGGLRIVGISAVGSIDDLSAFKAAKPSMGLAHQRKLYDAIEDLGH  180
            YLHAVPAEPLSGSQGEGGLRIVGISAVGSIDDLSAFKAAKPSMGLAHQRKLYDAIEDLGH
Sbjct  143  YLHAVPAEPLSGSQGEGGLRIVGISAVGSIDDLSAFKAAKPSMGLAHQRKLYDAIEDLGH  202

Query  181  GGVKEIAALSVTADAPPTVSYSLIREVLRLYHRTGEKLIITFAMPAYAKMVMNFGRFAMP  240
            GGVKEIAALSVTADAPPTVSYSLIREVLRLYHRTGEKLIITFAMPAYAKMVMNFGRFAMP
Sbjct  203  GGVKEIAALSVTADAPPTVSYSLIREVLRLYHRTGEKLIITFAMPAYAKMVMNFGRFAMP  262

Query  241  QVGEPFYAHRNNDPRTSNDLLLVPSIVEPSNFLENISRGVVTADDGPTARRRFATLCYMT  300
            QVGEPFYAHRNNDPRTSNDLLLVPSIVEPSNFLENISRGVVTADDGPTARRRFATLCYMT
Sbjct  263  QVGEPFYAHRNNDPRTSNDLLLVPSIVEPSNFLENISRGVVTADDGPTARRRFATLCYMT  322

Query  301  DGLDDYFMPLTRQVLSEGIQDI  322
            DGLDDYFMPLTRQVLSEGIQDI
Sbjct  323  DGLDDYFMPLTRQVLSEGIQDI  344


>gi|15609473|ref|NP_216852.1| hypothetical protein Rv2336 [Mycobacterium tuberculosis H37Rv]
 gi|15841840|ref|NP_336877.1| hypothetical protein MT2399 [Mycobacterium tuberculosis CDC1551]
 gi|31793520|ref|NP_856013.1| hypothetical protein Mb2364 [Mycobacterium bovis AF2122/97]
 48 more sequence titles
 
gi|121638223|ref|YP_978447.1| hypothetical protein BCG_2358 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|148662164|ref|YP_001283687.1| hypothetical protein MRA_2356 [Mycobacterium tuberculosis H37Ra]
 gi|148823537|ref|YP_001288291.1| hypothetical protein TBFG_12360 [Mycobacterium tuberculosis F11]
 gi|224990717|ref|YP_002645404.1| hypothetical protein JTY_2352 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253798590|ref|YP_003031591.1| hypothetical protein TBMG_01642 [Mycobacterium tuberculosis KZN 
1435]
 gi|254551383|ref|ZP_05141830.1| hypothetical protein Mtube_13130 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|289443853|ref|ZP_06433597.1| hypothetical protein TBLG_00955 [Mycobacterium tuberculosis T46]
 gi|289447977|ref|ZP_06437721.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289553877|ref|ZP_06443087.1| hypothetical protein TBXG_01627 [Mycobacterium tuberculosis KZN 
605]
 gi|289570470|ref|ZP_06450697.1| hypothetical protein TBJG_00837 [Mycobacterium tuberculosis T17]
 gi|289575028|ref|ZP_06455255.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289745615|ref|ZP_06504993.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289754441|ref|ZP_06513819.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289758461|ref|ZP_06517839.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289762503|ref|ZP_06521881.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|297634934|ref|ZP_06952714.1| hypothetical protein MtubK4_12466 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297731925|ref|ZP_06961043.1| hypothetical protein MtubKR_12588 [Mycobacterium tuberculosis 
KZN R506]
 gi|306793808|ref|ZP_07432110.1| hypothetical protein TMEG_02702 [Mycobacterium tuberculosis SUMu005]
 gi|306804079|ref|ZP_07440747.1| hypothetical protein TMHG_01525 [Mycobacterium tuberculosis SUMu008]
 gi|313659260|ref|ZP_07816140.1| hypothetical protein MtubKV_12603 [Mycobacterium tuberculosis 
KZN V2475]
 gi|339632361|ref|YP_004724003.1| hypothetical protein MAF_23490 [Mycobacterium africanum GM041182]
 gi|340627347|ref|YP_004745799.1| hypothetical protein MCAN_23681 [Mycobacterium canettii CIPT 
140010059]
 gi|1781243|emb|CAB06153.1| HYPOTHETICAL PROTEIN Rv2336 [Mycobacterium tuberculosis H37Rv]
 gi|13882104|gb|AAK46691.1| hypothetical protein MT2399 [Mycobacterium tuberculosis CDC1551]
 gi|31619113|emb|CAD97225.1| HYPOTHETICAL PROTEIN Mb2364 [Mycobacterium bovis AF2122/97]
 gi|121493871|emb|CAL72346.1| Hypothetical protein BCG_2358 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|148506316|gb|ABQ74125.1| hypothetical protein MRA_2356 [Mycobacterium tuberculosis H37Ra]
 gi|148722064|gb|ABR06689.1| hypothetical protein TBFG_12360 [Mycobacterium tuberculosis F11]
 gi|224773830|dbj|BAH26636.1| hypothetical protein JTY_2352 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253320093|gb|ACT24696.1| hypothetical protein TBMG_01642 [Mycobacterium tuberculosis KZN 
1435]
 gi|289416772|gb|EFD14012.1| hypothetical protein TBLG_00955 [Mycobacterium tuberculosis T46]
 gi|289420935|gb|EFD18136.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289438509|gb|EFD21002.1| hypothetical protein TBXG_01627 [Mycobacterium tuberculosis KZN 
605]
 gi|289539459|gb|EFD44037.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289544224|gb|EFD47872.1| hypothetical protein TBJG_00837 [Mycobacterium tuberculosis T17]
 gi|289686143|gb|EFD53631.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289695028|gb|EFD62457.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289710009|gb|EFD74025.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289714025|gb|EFD78037.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|308337963|gb|EFP26814.1| hypothetical protein TMEG_02702 [Mycobacterium tuberculosis SUMu005]
 gi|308349443|gb|EFP38294.1| hypothetical protein TMHG_01525 [Mycobacterium tuberculosis SUMu008]
 gi|323719245|gb|EGB28390.1| hypothetical protein TMMG_01625 [Mycobacterium tuberculosis CDC1551A]
 gi|326903953|gb|EGE50886.1| hypothetical protein TBPG_01840 [Mycobacterium tuberculosis W-148]
 gi|328458357|gb|AEB03780.1| hypothetical protein TBSG_01651 [Mycobacterium tuberculosis KZN 
4207]
 gi|339331717|emb|CCC27419.1| hypothetical protein MAF_23490 [Mycobacterium africanum GM041182]
 gi|340005537|emb|CCC44699.1| hypothetical protein MCAN_23681 [Mycobacterium canettii CIPT 
140010059]
 gi|341602261|emb|CCC64935.1| hypothetical protein BCGM_2342 [Mycobacterium bovis BCG str. 
Moreau RDJ]
 gi|344220163|gb|AEN00794.1| hypothetical protein MTCTRI2_2378 [Mycobacterium tuberculosis 
CTRI-2]
Length=322

 Score =  662 bits (1708),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 322/322 (100%), Positives = 322/322 (100%), Gaps = 0/322 (0%)

Query  1    MDVPHEQPALSSSKSNRFTSQRQTTGVGTTTVERLEPRLSPASRHITEAKAFGTECHVSS  60
            MDVPHEQPALSSSKSNRFTSQRQTTGVGTTTVERLEPRLSPASRHITEAKAFGTECHVSS
Sbjct  1    MDVPHEQPALSSSKSNRFTSQRQTTGVGTTTVERLEPRLSPASRHITEAKAFGTECHVSS  60

Query  61   FTREQDPDRAVRVEQIHGEAYVAAGHVYESALDELGRLDNSNAEFILDKARGSTRETEVI  120
            FTREQDPDRAVRVEQIHGEAYVAAGHVYESALDELGRLDNSNAEFILDKARGSTRETEVI
Sbjct  61   FTREQDPDRAVRVEQIHGEAYVAAGHVYESALDELGRLDNSNAEFILDKARGSTRETEVI  120

Query  121  YLHAVPAEPLSGSQGEGGLRIVGISAVGSIDDLSAFKAAKPSMGLAHQRKLYDAIEDLGH  180
            YLHAVPAEPLSGSQGEGGLRIVGISAVGSIDDLSAFKAAKPSMGLAHQRKLYDAIEDLGH
Sbjct  121  YLHAVPAEPLSGSQGEGGLRIVGISAVGSIDDLSAFKAAKPSMGLAHQRKLYDAIEDLGH  180

Query  181  GGVKEIAALSVTADAPPTVSYSLIREVLRLYHRTGEKLIITFAMPAYAKMVMNFGRFAMP  240
            GGVKEIAALSVTADAPPTVSYSLIREVLRLYHRTGEKLIITFAMPAYAKMVMNFGRFAMP
Sbjct  181  GGVKEIAALSVTADAPPTVSYSLIREVLRLYHRTGEKLIITFAMPAYAKMVMNFGRFAMP  240

Query  241  QVGEPFYAHRNNDPRTSNDLLLVPSIVEPSNFLENISRGVVTADDGPTARRRFATLCYMT  300
            QVGEPFYAHRNNDPRTSNDLLLVPSIVEPSNFLENISRGVVTADDGPTARRRFATLCYMT
Sbjct  241  QVGEPFYAHRNNDPRTSNDLLLVPSIVEPSNFLENISRGVVTADDGPTARRRFATLCYMT  300

Query  301  DGLDDYFMPLTRQVLSEGIQDI  322
            DGLDDYFMPLTRQVLSEGIQDI
Sbjct  301  DGLDDYFMPLTRQVLSEGIQDI  322


>gi|289750942|ref|ZP_06510320.1| hypothetical protein TBDG_01152 [Mycobacterium tuberculosis T92]
 gi|289691529|gb|EFD58958.1| hypothetical protein TBDG_01152 [Mycobacterium tuberculosis T92]
Length=322

 Score =  658 bits (1697),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 321/322 (99%), Positives = 321/322 (99%), Gaps = 0/322 (0%)

Query  1    MDVPHEQPALSSSKSNRFTSQRQTTGVGTTTVERLEPRLSPASRHITEAKAFGTECHVSS  60
            MDVPHEQPALSSSKSNRFTSQRQTTGVGTTTVERLEPRLSPASRHITEAKAFGTECHVSS
Sbjct  1    MDVPHEQPALSSSKSNRFTSQRQTTGVGTTTVERLEPRLSPASRHITEAKAFGTECHVSS  60

Query  61   FTREQDPDRAVRVEQIHGEAYVAAGHVYESALDELGRLDNSNAEFILDKARGSTRETEVI  120
            FTREQDPDRAVRVEQIHGEAYVAAGHVYESALDELGRLDNSNAEFIL KARGSTRETEVI
Sbjct  61   FTREQDPDRAVRVEQIHGEAYVAAGHVYESALDELGRLDNSNAEFILYKARGSTRETEVI  120

Query  121  YLHAVPAEPLSGSQGEGGLRIVGISAVGSIDDLSAFKAAKPSMGLAHQRKLYDAIEDLGH  180
            YLHAVPAEPLSGSQGEGGLRIVGISAVGSIDDLSAFKAAKPSMGLAHQRKLYDAIEDLGH
Sbjct  121  YLHAVPAEPLSGSQGEGGLRIVGISAVGSIDDLSAFKAAKPSMGLAHQRKLYDAIEDLGH  180

Query  181  GGVKEIAALSVTADAPPTVSYSLIREVLRLYHRTGEKLIITFAMPAYAKMVMNFGRFAMP  240
            GGVKEIAALSVTADAPPTVSYSLIREVLRLYHRTGEKLIITFAMPAYAKMVMNFGRFAMP
Sbjct  181  GGVKEIAALSVTADAPPTVSYSLIREVLRLYHRTGEKLIITFAMPAYAKMVMNFGRFAMP  240

Query  241  QVGEPFYAHRNNDPRTSNDLLLVPSIVEPSNFLENISRGVVTADDGPTARRRFATLCYMT  300
            QVGEPFYAHRNNDPRTSNDLLLVPSIVEPSNFLENISRGVVTADDGPTARRRFATLCYMT
Sbjct  241  QVGEPFYAHRNNDPRTSNDLLLVPSIVEPSNFLENISRGVVTADDGPTARRRFATLCYMT  300

Query  301  DGLDDYFMPLTRQVLSEGIQDI  322
            DGLDDYFMPLTRQVLSEGIQDI
Sbjct  301  DGLDDYFMPLTRQVLSEGIQDI  322


>gi|254365117|ref|ZP_04981163.1| hypothetical protein TBHG_02275 [Mycobacterium tuberculosis str. 
Haarlem]
 gi|134150631|gb|EBA42676.1| hypothetical protein TBHG_02275 [Mycobacterium tuberculosis str. 
Haarlem]
Length=296

 Score =  607 bits (1566),  Expect = 7e-172, Method: Compositional matrix adjust.
 Identities = 295/296 (99%), Positives = 296/296 (100%), Gaps = 0/296 (0%)

Query  27   VGTTTVERLEPRLSPASRHITEAKAFGTECHVSSFTREQDPDRAVRVEQIHGEAYVAAGH  86
            +GTTTVERLEPRLSPASRHITEAKAFGTECHVSSFTREQDPDRAVRVEQIHGEAYVAAGH
Sbjct  1    MGTTTVERLEPRLSPASRHITEAKAFGTECHVSSFTREQDPDRAVRVEQIHGEAYVAAGH  60

Query  87   VYESALDELGRLDNSNAEFILDKARGSTRETEVIYLHAVPAEPLSGSQGEGGLRIVGISA  146
            VYESALDELGRLDNSNAEFILDKARGSTRETEVIYLHAVPAEPLSGSQGEGGLRIVGISA
Sbjct  61   VYESALDELGRLDNSNAEFILDKARGSTRETEVIYLHAVPAEPLSGSQGEGGLRIVGISA  120

Query  147  VGSIDDLSAFKAAKPSMGLAHQRKLYDAIEDLGHGGVKEIAALSVTADAPPTVSYSLIRE  206
            VGSIDDLSAFKAAKPSMGLAHQRKLYDAIEDLGHGGVKEIAALSVTADAPPTVSYSLIRE
Sbjct  121  VGSIDDLSAFKAAKPSMGLAHQRKLYDAIEDLGHGGVKEIAALSVTADAPPTVSYSLIRE  180

Query  207  VLRLYHRTGEKLIITFAMPAYAKMVMNFGRFAMPQVGEPFYAHRNNDPRTSNDLLLVPSI  266
            VLRLYHRTGEKLIITFAMPAYAKMVMNFGRFAMPQVGEPFYAHRNNDPRTSNDLLLVPSI
Sbjct  181  VLRLYHRTGEKLIITFAMPAYAKMVMNFGRFAMPQVGEPFYAHRNNDPRTSNDLLLVPSI  240

Query  267  VEPSNFLENISRGVVTADDGPTARRRFATLCYMTDGLDDYFMPLTRQVLSEGIQDI  322
            VEPSNFLENISRGVVTADDGPTARRRFATLCYMTDGLDDYFMPLTRQVLSEGIQDI
Sbjct  241  VEPSNFLENISRGVVTADDGPTARRRFATLCYMTDGLDDYFMPLTRQVLSEGIQDI  296


>gi|298525822|ref|ZP_07013231.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|298495616|gb|EFI30910.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
Length=286

 Score =  568 bits (1465),  Expect = 3e-160, Method: Compositional matrix adjust.
 Identities = 276/277 (99%), Positives = 276/277 (99%), Gaps = 0/277 (0%)

Query  46   ITEAKAFGTECHVSSFTREQDPDRAVRVEQIHGEAYVAAGHVYESALDELGRLDNSNAEF  105
             TEAKAFGTECHVSSFTREQDPDRAVRVEQIHGEAYVAAGHVYESALDELGRLDNSNAEF
Sbjct  10   FTEAKAFGTECHVSSFTREQDPDRAVRVEQIHGEAYVAAGHVYESALDELGRLDNSNAEF  69

Query  106  ILDKARGSTRETEVIYLHAVPAEPLSGSQGEGGLRIVGISAVGSIDDLSAFKAAKPSMGL  165
            ILDKARGSTRETEVIYLHAVPAEPLSGSQGEGGLRIVGISAVGSIDDLSAFKAAKPSMGL
Sbjct  70   ILDKARGSTRETEVIYLHAVPAEPLSGSQGEGGLRIVGISAVGSIDDLSAFKAAKPSMGL  129

Query  166  AHQRKLYDAIEDLGHGGVKEIAALSVTADAPPTVSYSLIREVLRLYHRTGEKLIITFAMP  225
            AHQRKLYDAIEDLGHGGVKEIAALSVTADAPPTVSYSLIREVLRLYHRTGEKLIITFAMP
Sbjct  130  AHQRKLYDAIEDLGHGGVKEIAALSVTADAPPTVSYSLIREVLRLYHRTGEKLIITFAMP  189

Query  226  AYAKMVMNFGRFAMPQVGEPFYAHRNNDPRTSNDLLLVPSIVEPSNFLENISRGVVTADD  285
            AYAKMVMNFGRFAMPQVGEPFYAHRNNDPRTSNDLLLVPSIVEPSNFLENISRGVVTADD
Sbjct  190  AYAKMVMNFGRFAMPQVGEPFYAHRNNDPRTSNDLLLVPSIVEPSNFLENISRGVVTADD  249

Query  286  GPTARRRFATLCYMTDGLDDYFMPLTRQVLSEGIQDI  322
            GPTARRRFATLCYMTDGLDDYFMPLTRQVLSEGIQDI
Sbjct  250  GPTARRRFATLCYMTDGLDDYFMPLTRQVLSEGIQDI  286


>gi|167969889|ref|ZP_02552166.1| hypothetical protein MtubH3_18424 [Mycobacterium tuberculosis 
H37Ra]
 gi|254232480|ref|ZP_04925807.1| hypothetical protein TBCG_02281 [Mycobacterium tuberculosis C]
 gi|308232103|ref|ZP_07414932.2| hypothetical protein TMAG_00525 [Mycobacterium tuberculosis SUMu001]
 20 more sequence titles
 
gi|308369690|ref|ZP_07418711.2| hypothetical protein TMBG_00881 [Mycobacterium tuberculosis SUMu002]
 gi|308370977|ref|ZP_07423441.2| hypothetical protein TMCG_00431 [Mycobacterium tuberculosis SUMu003]
 gi|308372205|ref|ZP_07427806.2| hypothetical protein TMDG_00813 [Mycobacterium tuberculosis SUMu004]
 gi|308374551|ref|ZP_07436503.2| hypothetical protein TMFG_01297 [Mycobacterium tuberculosis SUMu006]
 gi|308375851|ref|ZP_07445320.2| hypothetical protein TMGG_00894 [Mycobacterium tuberculosis SUMu007]
 gi|308377981|ref|ZP_07481140.2| hypothetical protein TMIG_01008 [Mycobacterium tuberculosis SUMu009]
 gi|308380335|ref|ZP_07489585.2| hypothetical protein TMKG_00596 [Mycobacterium tuberculosis SUMu011]
 gi|308404728|ref|ZP_07494119.2| hypothetical protein TMLG_03301 [Mycobacterium tuberculosis SUMu012]
 gi|124601539|gb|EAY60549.1| hypothetical protein TBCG_02281 [Mycobacterium tuberculosis C]
 gi|308215057|gb|EFO74456.1| hypothetical protein TMAG_00525 [Mycobacterium tuberculosis SUMu001]
 gi|308326806|gb|EFP15657.1| hypothetical protein TMBG_00881 [Mycobacterium tuberculosis SUMu002]
 gi|308330325|gb|EFP19176.1| hypothetical protein TMCG_00431 [Mycobacterium tuberculosis SUMu003]
 gi|308334158|gb|EFP23009.1| hypothetical protein TMDG_00813 [Mycobacterium tuberculosis SUMu004]
 gi|308341568|gb|EFP30419.1| hypothetical protein TMFG_01297 [Mycobacterium tuberculosis SUMu006]
 gi|308345140|gb|EFP33991.1| hypothetical protein TMGG_00894 [Mycobacterium tuberculosis SUMu007]
 gi|308353995|gb|EFP42846.1| hypothetical protein TMIG_01008 [Mycobacterium tuberculosis SUMu009]
 gi|308361873|gb|EFP50724.1| hypothetical protein TMKG_00596 [Mycobacterium tuberculosis SUMu011]
 gi|308365457|gb|EFP54308.1| hypothetical protein TMLG_03301 [Mycobacterium tuberculosis SUMu012]
 gi|339295240|gb|AEJ47351.1| hypothetical protein CCDC5079_2161 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339298860|gb|AEJ50970.1| hypothetical protein CCDC5180_2133 [Mycobacterium tuberculosis 
CCDC5180]
Length=250

 Score =  512 bits (1319),  Expect = 2e-143, Method: Compositional matrix adjust.
 Identities = 249/250 (99%), Positives = 250/250 (100%), Gaps = 0/250 (0%)

Query  73   VEQIHGEAYVAAGHVYESALDELGRLDNSNAEFILDKARGSTRETEVIYLHAVPAEPLSG  132
            +EQIHGEAYVAAGHVYESALDELGRLDNSNAEFILDKARGSTRETEVIYLHAVPAEPLSG
Sbjct  1    MEQIHGEAYVAAGHVYESALDELGRLDNSNAEFILDKARGSTRETEVIYLHAVPAEPLSG  60

Query  133  SQGEGGLRIVGISAVGSIDDLSAFKAAKPSMGLAHQRKLYDAIEDLGHGGVKEIAALSVT  192
            SQGEGGLRIVGISAVGSIDDLSAFKAAKPSMGLAHQRKLYDAIEDLGHGGVKEIAALSVT
Sbjct  61   SQGEGGLRIVGISAVGSIDDLSAFKAAKPSMGLAHQRKLYDAIEDLGHGGVKEIAALSVT  120

Query  193  ADAPPTVSYSLIREVLRLYHRTGEKLIITFAMPAYAKMVMNFGRFAMPQVGEPFYAHRNN  252
            ADAPPTVSYSLIREVLRLYHRTGEKLIITFAMPAYAKMVMNFGRFAMPQVGEPFYAHRNN
Sbjct  121  ADAPPTVSYSLIREVLRLYHRTGEKLIITFAMPAYAKMVMNFGRFAMPQVGEPFYAHRNN  180

Query  253  DPRTSNDLLLVPSIVEPSNFLENISRGVVTADDGPTARRRFATLCYMTDGLDDYFMPLTR  312
            DPRTSNDLLLVPSIVEPSNFLENISRGVVTADDGPTARRRFATLCYMTDGLDDYFMPLTR
Sbjct  181  DPRTSNDLLLVPSIVEPSNFLENISRGVVTADDGPTARRRFATLCYMTDGLDDYFMPLTR  240

Query  313  QVLSEGIQDI  322
            QVLSEGIQDI
Sbjct  241  QVLSEGIQDI  250


>gi|294994562|ref|ZP_06800253.1| hypothetical protein Mtub2_08598 [Mycobacterium tuberculosis 
210]
Length=198

 Score =  409 bits (1051),  Expect = 3e-112, Method: Compositional matrix adjust.
 Identities = 198/198 (100%), Positives = 198/198 (100%), Gaps = 0/198 (0%)

Query  125  VPAEPLSGSQGEGGLRIVGISAVGSIDDLSAFKAAKPSMGLAHQRKLYDAIEDLGHGGVK  184
            VPAEPLSGSQGEGGLRIVGISAVGSIDDLSAFKAAKPSMGLAHQRKLYDAIEDLGHGGVK
Sbjct  1    VPAEPLSGSQGEGGLRIVGISAVGSIDDLSAFKAAKPSMGLAHQRKLYDAIEDLGHGGVK  60

Query  185  EIAALSVTADAPPTVSYSLIREVLRLYHRTGEKLIITFAMPAYAKMVMNFGRFAMPQVGE  244
            EIAALSVTADAPPTVSYSLIREVLRLYHRTGEKLIITFAMPAYAKMVMNFGRFAMPQVGE
Sbjct  61   EIAALSVTADAPPTVSYSLIREVLRLYHRTGEKLIITFAMPAYAKMVMNFGRFAMPQVGE  120

Query  245  PFYAHRNNDPRTSNDLLLVPSIVEPSNFLENISRGVVTADDGPTARRRFATLCYMTDGLD  304
            PFYAHRNNDPRTSNDLLLVPSIVEPSNFLENISRGVVTADDGPTARRRFATLCYMTDGLD
Sbjct  121  PFYAHRNNDPRTSNDLLLVPSIVEPSNFLENISRGVVTADDGPTARRRFATLCYMTDGLD  180

Query  305  DYFMPLTRQVLSEGIQDI  322
            DYFMPLTRQVLSEGIQDI
Sbjct  181  DYFMPLTRQVLSEGIQDI  198


>gi|183983586|ref|YP_001851877.1| hypothetical protein MMAR_3608 [Mycobacterium marinum M]
 gi|183176912|gb|ACC42022.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=283

 Score = 49.3 bits (116),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 107/268 (40%), Gaps = 21/268 (7%)

Query  61   FTREQDPDRAVRVEQIHGEAYVAAGHVYESALDELGRLDNSNAEFILDKARGSTRETEVI  120
            FT  Q         +IH ++YVA+  V   +L + G L        LD ARG      + 
Sbjct  16   FTEAQQSGLVHLARRIHAQSYVASQFVTVDSLVD-GALPAE-----LDHARGQHVTYSIA  69

Query  121  YL--HAVPAEPLSGSQGEG-GLRIVGISAVGSIDDLSAFKAAKPSMGLAHQRKL--YDAI  175
            Y+    V  E L  S   G  +    I  +   DD ++  A   + G      L    ++
Sbjct  70   YVADSQVEEESLGSSDPTGHAMATWRIRDIAPDDDFTSLPAYTSTAGALSSDGLDFLRSV  129

Query  176  EDLGHGGVKEIAALSVTADAPPTVSYSLIREVLR--LYHRTGEKLIITFAMPAYAKMVMN  233
            +      ++EI AL+ T   P      +IR+ L   L     E    +     Y   V +
Sbjct  130  DGDPRSILREIGALAKTPMCPAGGVLEIIRDALHRALARDVDEVWFFSIVQSTYETFVKH  189

Query  234  FGRFAMPQVGEPFYAHRNNDPRTSNDLLLVPSIVEPSNFLENISRGVVTADDGPTARRRF  293
             G   +  +G    A R       + + LVP IVEP  FLE + R   T  + P AR + 
Sbjct  190  LGCLTVRPIGN---AVRLRKSGVRSHVRLVPVIVEPRRFLERLYRCATTPAN-PRARTQL  245

Query  294  ATLCYMTDGL-DDYFMPLTRQVLSEGIQ  320
             +  +  +GL +DY   +++QV++  + 
Sbjct  246  TSFEFFAEGLPEDY---VSKQVVAASVN  270


>gi|156101525|ref|XP_001616456.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148805330|gb|EDL46729.1| hypothetical protein, conserved [Plasmodium vivax]
Length=1037

 Score = 37.4 bits (85),  Expect = 2.9, Method: Composition-based stats.
 Identities = 33/109 (31%), Positives = 49/109 (45%), Gaps = 15/109 (13%)

Query  86   HVYESALDELG---RLDNSNAEFILDKARGSTRETEVIYLHAVPAEPLSGSQGEGG----  138
            HV  S L  LG    ++ SN  F   K RG++  TE+ YL   P++   G++  GG    
Sbjct  252  HVLRSFLYSLGGYLNINISNISFRKSKVRGTSTRTELKYLDKGPSK---GARSAGGDDLF  308

Query  139  LRIVGISAVGSIDDLSAFKAAKPSMGLAHQRKLYDAIEDLGHGGVKEIA  187
               VG+      ++++  K + P   L +Q   YD       GG KE A
Sbjct  309  YEYVGVIVKKVTEEIANPKVSLPMRNLLYQYVFYDQA-----GGAKESA  352


>gi|333900378|ref|YP_004474251.1| methyl-accepting chemotaxis sensory transducer [Pseudomonas fulva 
12-X]
 gi|333115643|gb|AEF22157.1| methyl-accepting chemotaxis sensory transducer [Pseudomonas fulva 
12-X]
Length=653

 Score = 37.0 bits (84),  Expect = 3.8, Method: Compositional matrix adjust.
 Identities = 33/135 (25%), Positives = 59/135 (44%), Gaps = 7/135 (5%)

Query  4    PHEQPALSSSKSNRFTSQRQTTGVGTTTVERLEPRLSPASRHITEAKAFGTECHVSSFTR  63
              +  A++   SN    QRQ T    T +  +   +   +R I +A       +VS+   
Sbjct  388  AEQSSAVALQTSNNVAQQRQGTDQVVTAISEMSSTVKDVARSINDAAEMSQRVNVSTVQG  447

Query  64   EQDPDRAVRVEQIHGEAYVAAGHVYESALDEL-GRLDNSNAEFILDKARGSTRETEVIYL  122
            + + ++ + +  I G    A  H     +DEL G  D+ ++  +LD  RG   +T ++ L
Sbjct  448  KAEIEKTIGL--IKGLEVQA--HETSQIIDELKGESDSISS--VLDVIRGVAEQTNLLAL  501

Query  123  HAVPAEPLSGSQGEG  137
            +A      +G QG G
Sbjct  502  NAAIEAARAGEQGRG  516


>gi|296803701|ref|XP_002842703.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
 gi|238846053|gb|EEQ35715.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
Length=410

 Score = 37.0 bits (84),  Expect = 4.1, Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 13/100 (13%)

Query  10   LSSSKSNRFTSQRQTTGVGTTTVERLEPRLSPASRHITEA----KAFGTECHVSSFTREQ  65
            L  S   R+T  R     GT      EP   PA R   ++    +A   +C      R +
Sbjct  98   LHRSAVERYTRSRIEAAEGTANQPTSEPVTPPAKRQRRDSDNRSRAATMKC------RFR  151

Query  66   DPDRAVRVEQIHGEAYVAAGHVYESALDELGRLDNSNAEF  105
            D DR V  + +H    V A H++  +L E  +LDN N  F
Sbjct  152  DGDRCVVTKSLHP---VDAAHIFPYSLQESWKLDNPNNNF  188


>gi|145636058|ref|ZP_01791728.1| ribonuclease G [Haemophilus influenzae PittHH]
 gi|145270580|gb|EDK10513.1| ribonuclease G [Haemophilus influenzae PittHH]
Length=491

 Score = 36.2 bits (82),  Expect = 8.0, Method: Compositional matrix adjust.
 Identities = 13/36 (37%), Positives = 24/36 (67%), Gaps = 0/36 (0%)

Query  198  TVSYSLIREVLRLYHRTGEKLIITFAMPAYAKMVMN  233
            TV Y ++RE++R+YH    +  + +A PA +K ++N
Sbjct  420  TVCYEIMREIIRVYHLFSSEQFVVYASPAVSKYLIN  455



Lambda     K      H
   0.317    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 567840616038


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40