BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2341
Length=139
Score E
Sequences producing significant alignments: (Bits) Value
gi|148823542|ref|YP_001288296.1| lipoprotein lppQ [Mycobacterium... 284 3e-75
gi|15609478|ref|NP_216857.1| lipoprotein LppQ [Mycobacterium tub... 283 6e-75
gi|289745633|ref|ZP_06505011.1| lipoprotein lppQ [Mycobacterium ... 281 3e-74
gi|340627352|ref|YP_004745804.1| putative lipoprotein LPPQ [Myco... 280 4e-74
gi|339631295|ref|YP_004722937.1| hypothetical protein MAF_12470 ... 42.0 0.030
gi|15608368|ref|NP_215744.1| lipoprotein LpqX [Mycobacterium tub... 42.0 0.032
gi|289569231|ref|ZP_06449458.1| lipoprotein lpqX [Mycobacterium ... 41.6 0.036
gi|340626241|ref|YP_004744693.1| putative lipoprotein LPQX [Myco... 40.4 0.093
gi|84489890|ref|YP_448122.1| putative phosphoserine phosphatase ... 38.9 0.29
gi|338973131|ref|ZP_08628500.1| putative glutathione S-transfera... 36.2 1.8
gi|336424787|ref|ZP_08604821.1| hypothetical protein HMPREF0994_... 35.8 2.1
gi|225420394|ref|ZP_03762697.1| hypothetical protein CLOSTASPAR_... 35.4 2.5
gi|319945031|ref|ZP_08019293.1| hypothetical protein HMPREF0551_... 35.4 2.5
gi|16182494|gb|AAL13505.1| GH02863p [Drosophila melanogaster] 35.4 3.0
gi|195331891|ref|XP_002032632.1| GM20893 [Drosophila sechellia] ... 35.0 3.8
gi|344344916|ref|ZP_08775775.1| diguanylate cyclase [Marichromat... 34.7 4.5
gi|218189511|gb|EEC71938.1| hypothetical protein OsI_04750 [Oryz... 34.3 7.1
gi|253827056|ref|ZP_04869941.1| ABC transporter, periplasmic bin... 33.9 7.4
gi|222619657|gb|EEE55789.1| hypothetical protein OsJ_04371 [Oryz... 33.9 7.5
>gi|148823542|ref|YP_001288296.1| lipoprotein lppQ [Mycobacterium tuberculosis F11]
gi|167969897|ref|ZP_02552174.1| lipoprotein lppQ [Mycobacterium tuberculosis H37Ra]
gi|253798585|ref|YP_003031586.1| lipoprotein lppQ [Mycobacterium tuberculosis KZN 1435]
7 more sequence titles
Length=144
Score = 284 bits (726), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 139/139 (100%), Positives = 139/139 (100%), Gaps = 0/139 (0%)
Query 1 MPVGGRQHVFEKLASILGLVAAPLMLLGLSACGRSAGKTSEPTCPTEPIDAADSSTTPDP 60
MPVGGRQHVFEKLASILGLVAAPLMLLGLSACGRSAGKTSEPTCPTEPIDAADSSTTPDP
Sbjct 6 MPVGGRQHVFEKLASILGLVAAPLMLLGLSACGRSAGKTSEPTCPTEPIDAADSSTTPDP 65
Query 61 SCVVRATEINGNGSRIQTWTGSYDAAATQSGGVCGGTCNFHATVRFTVDEGQISGSVDQV 120
SCVVRATEINGNGSRIQTWTGSYDAAATQSGGVCGGTCNFHATVRFTVDEGQISGSVDQV
Sbjct 66 SCVVRATEINGNGSRIQTWTGSYDAAATQSGGVCGGTCNFHATVRFTVDEGQISGSVDQV 125
Query 121 YQAAMVAIATRPTSPSLAP 139
YQAAMVAIATRPTSPSLAP
Sbjct 126 YQAAMVAIATRPTSPSLAP 144
>gi|15609478|ref|NP_216857.1| lipoprotein LppQ [Mycobacterium tuberculosis H37Rv]
gi|15841848|ref|NP_336885.1| putative lipoprotein [Mycobacterium tuberculosis CDC1551]
gi|31793526|ref|NP_856019.1| lipoprotein LppQ [Mycobacterium bovis AF2122/97]
66 more sequence titles
Length=139
Score = 283 bits (724), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 139/139 (100%), Positives = 139/139 (100%), Gaps = 0/139 (0%)
Query 1 MPVGGRQHVFEKLASILGLVAAPLMLLGLSACGRSAGKTSEPTCPTEPIDAADSSTTPDP 60
MPVGGRQHVFEKLASILGLVAAPLMLLGLSACGRSAGKTSEPTCPTEPIDAADSSTTPDP
Sbjct 1 MPVGGRQHVFEKLASILGLVAAPLMLLGLSACGRSAGKTSEPTCPTEPIDAADSSTTPDP 60
Query 61 SCVVRATEINGNGSRIQTWTGSYDAAATQSGGVCGGTCNFHATVRFTVDEGQISGSVDQV 120
SCVVRATEINGNGSRIQTWTGSYDAAATQSGGVCGGTCNFHATVRFTVDEGQISGSVDQV
Sbjct 61 SCVVRATEINGNGSRIQTWTGSYDAAATQSGGVCGGTCNFHATVRFTVDEGQISGSVDQV 120
Query 121 YQAAMVAIATRPTSPSLAP 139
YQAAMVAIATRPTSPSLAP
Sbjct 121 YQAAMVAIATRPTSPSLAP 139
>gi|289745633|ref|ZP_06505011.1| lipoprotein lppQ [Mycobacterium tuberculosis 02_1987]
gi|289686161|gb|EFD53649.1| lipoprotein lppQ [Mycobacterium tuberculosis 02_1987]
Length=139
Score = 281 bits (718), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 138/139 (99%), Positives = 138/139 (99%), Gaps = 0/139 (0%)
Query 1 MPVGGRQHVFEKLASILGLVAAPLMLLGLSACGRSAGKTSEPTCPTEPIDAADSSTTPDP 60
MPVGGRQHVFEKLASILGLVAAPLMLLGLSACGRSAGKTSEPTCPTEPIDAADSSTTPDP
Sbjct 1 MPVGGRQHVFEKLASILGLVAAPLMLLGLSACGRSAGKTSEPTCPTEPIDAADSSTTPDP 60
Query 61 SCVVRATEINGNGSRIQTWTGSYDAAATQSGGVCGGTCNFHATVRFTVDEGQISGSVDQV 120
SCVVRAT INGNGSRIQTWTGSYDAAATQSGGVCGGTCNFHATVRFTVDEGQISGSVDQV
Sbjct 61 SCVVRATAINGNGSRIQTWTGSYDAAATQSGGVCGGTCNFHATVRFTVDEGQISGSVDQV 120
Query 121 YQAAMVAIATRPTSPSLAP 139
YQAAMVAIATRPTSPSLAP
Sbjct 121 YQAAMVAIATRPTSPSLAP 139
>gi|340627352|ref|YP_004745804.1| putative lipoprotein LPPQ [Mycobacterium canettii CIPT 140010059]
gi|340005542|emb|CCC44704.1| putative conserved lipoprotein LPPQ [Mycobacterium canettii CIPT
140010059]
Length=139
Score = 280 bits (717), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 138/139 (99%), Positives = 138/139 (99%), Gaps = 0/139 (0%)
Query 1 MPVGGRQHVFEKLASILGLVAAPLMLLGLSACGRSAGKTSEPTCPTEPIDAADSSTTPDP 60
MPVGGRQHVFEKLASILGLVAAPLMLLGLSACGRSA KTSEPTCPTEPIDAADSSTTPDP
Sbjct 1 MPVGGRQHVFEKLASILGLVAAPLMLLGLSACGRSADKTSEPTCPTEPIDAADSSTTPDP 60
Query 61 SCVVRATEINGNGSRIQTWTGSYDAAATQSGGVCGGTCNFHATVRFTVDEGQISGSVDQV 120
SCVVRATEINGNGSRIQTWTGSYDAAATQSGGVCGGTCNFHATVRFTVDEGQISGSVDQV
Sbjct 61 SCVVRATEINGNGSRIQTWTGSYDAAATQSGGVCGGTCNFHATVRFTVDEGQISGSVDQV 120
Query 121 YQAAMVAIATRPTSPSLAP 139
YQAAMVAIATRPTSPSLAP
Sbjct 121 YQAAMVAIATRPTSPSLAP 139
>gi|339631295|ref|YP_004722937.1| hypothetical protein MAF_12470 [Mycobacterium africanum GM041182]
gi|339330651|emb|CCC26319.1| putative lipoprotein LPQX [Mycobacterium africanum GM041182]
Length=185
Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/116 (32%), Positives = 55/116 (48%), Gaps = 19/116 (16%)
Query 20 VAAPLMLLGLSACGRSAGKTSEPTCPTEPI--DAADSSTTPDPSCVVRATEI-NGNGSRI 76
+AA L+L+ +AC R T EP CPT+ A +TT DP C+VRAT +G
Sbjct 8 LAATLLLITTAACSRPG--TEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTADGDAA 65
Query 77 QTWTGSYDAAATQSGGVCGGTCNFHATVRFTVDEGQIS--GSVDQVYQAAMVAIAT 130
WTG+ A F+A++ V +G +S G + +A ++ + T
Sbjct 66 SRWTGTVRIAG------------FYASICNAVWDGNVSLAGKDELTGKATLILVET 109
>gi|15608368|ref|NP_215744.1| lipoprotein LpqX [Mycobacterium tuberculosis H37Rv]
gi|15840672|ref|NP_335709.1| hypothetical protein MT1265 [Mycobacterium tuberculosis CDC1551]
gi|31792421|ref|NP_854914.1| putative lipoprotein LPQX [Mycobacterium bovis AF2122/97]
70 more sequence titles
Length=185
Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/116 (32%), Positives = 55/116 (48%), Gaps = 19/116 (16%)
Query 20 VAAPLMLLGLSACGRSAGKTSEPTCPTEPI--DAADSSTTPDPSCVVRATEI-NGNGSRI 76
+AA L+L+ +AC R T EP CPT+ A +TT DP C+VRAT +G
Sbjct 8 LAATLLLITTAACSRPG--TEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTADGDAA 65
Query 77 QTWTGSYDAAATQSGGVCGGTCNFHATVRFTVDEGQIS--GSVDQVYQAAMVAIAT 130
WTG+ A F+A++ V +G +S G + +A ++ + T
Sbjct 66 SRWTGTVRIAG------------FYASICNAVWDGNVSLAGKDELTGKATLILVET 109
>gi|289569231|ref|ZP_06449458.1| lipoprotein lpqX [Mycobacterium tuberculosis T17]
gi|289542985|gb|EFD46633.1| lipoprotein lpqX [Mycobacterium tuberculosis T17]
Length=157
Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 36/117 (31%), Positives = 55/117 (48%), Gaps = 19/117 (16%)
Query 19 LVAAPLMLLGLSACGRSAGKTSEPTCPTEPI--DAADSSTTPDPSCVVRATEI-NGNGSR 75
+AA L+L+ +AC R T EP CPT+ A +TT DP C+VRAT +G
Sbjct 7 WLAATLLLITTAACSRPG--TEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTADGDA 64
Query 76 IQTWTGSYDAAATQSGGVCGGTCNFHATVRFTVDEGQIS--GSVDQVYQAAMVAIAT 130
WTG+ A F+A++ V +G +S G + +A ++ + T
Sbjct 65 ASRWTGTVRIAG------------FYASICNAVWDGNVSLAGKDELTGKATLILVET 109
>gi|340626241|ref|YP_004744693.1| putative lipoprotein LPQX [Mycobacterium canettii CIPT 140010059]
gi|340004431|emb|CCC43574.1| putative lipoprotein LPQX [Mycobacterium canettii CIPT 140010059]
Length=185
Score = 40.4 bits (93), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 31/83 (38%), Positives = 41/83 (50%), Gaps = 10/83 (12%)
Query 20 VAAPLMLLGLSACGRSAGKTSEPTCPTEPI--DAADSSTTPDPSCVVRATEI-NGNGSRI 76
+AA L+L+ +AC R T EP CPT+ A +TT DP C+VRAT +G
Sbjct 8 LAATLLLITTAACSRPG--TEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTADGDAA 65
Query 77 QTWTGSYDAAATQSGGVCGGTCN 99
WTG+ A G+ CN
Sbjct 66 SRWTGTVRIA-----GLYASICN 83
>gi|84489890|ref|YP_448122.1| putative phosphoserine phosphatase [Methanosphaera stadtmanae
DSM 3091]
gi|84373209|gb|ABC57479.1| putative phosphoserine phosphatase [Methanosphaera stadtmanae
DSM 3091]
Length=533
Score = 38.9 bits (89), Expect = 0.29, Method: Composition-based stats.
Identities = 23/72 (32%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query 46 TEPIDAADSSTTPDPSCVVRATEINGNGSRIQTWTGSYDAAATQSGGVCGGTCNFHATVR 105
T ID A + +P V ATE+ G +I TGS+D A + + F+ T+
Sbjct 62 TSDIDEAMDKISLNPGAVETATELKKQGYKIAIITGSFDVIALKVKELINADYAFYNTLE 121
Query 106 FTVDEGQISGSV 117
VD+G+++G V
Sbjct 122 --VDDGKLTGEV 131
>gi|338973131|ref|ZP_08628500.1| putative glutathione S-transferase-related transmembrane protein
[Bradyrhizobiaceae bacterium SG-6C]
gi|338233703|gb|EGP08824.1| putative glutathione S-transferase-related transmembrane protein
[Bradyrhizobiaceae bacterium SG-6C]
Length=176
Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/80 (28%), Positives = 35/80 (44%), Gaps = 4/80 (5%)
Query 30 SACGRSAGKTSEPTCPTEPIDAADSSTTPDP----SCVVRATEINGNGSRIQTWTGSYDA 85
S + AG T P PT PI+ ++T D V R +NG+ T+ G++D+
Sbjct 96 SFSDKDAGLTRHPMAPTWPIEMLGTATFIDQGGKTKLVNRVVALNGSSEERATFEGNFDS 155
Query 86 AATQSGGVCGGTCNFHATVR 105
GG + AT++
Sbjct 156 MTQGWGGTWDQLAAYLATLQ 175
>gi|336424787|ref|ZP_08604821.1| hypothetical protein HMPREF0994_00827 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336013660|gb|EGN43536.1| hypothetical protein HMPREF0994_00827 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length=522
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 15/42 (36%), Positives = 26/42 (62%), Gaps = 0/42 (0%)
Query 16 ILGLVAAPLMLLGLSACGRSAGKTSEPTCPTEPIDAADSSTT 57
+L + A +M +GL+ACG S+ T P+ + +AADS ++
Sbjct 5 VLAFMLAAMMTVGLTACGSSSAGTDSPSAASGQSEAADSGSS 46
>gi|225420394|ref|ZP_03762697.1| hypothetical protein CLOSTASPAR_06739 [Clostridium asparagiforme
DSM 15981]
gi|225040971|gb|EEG51217.1| hypothetical protein CLOSTASPAR_06739 [Clostridium asparagiforme
DSM 15981]
Length=466
Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 17/44 (39%), Positives = 25/44 (57%), Gaps = 0/44 (0%)
Query 18 GLVAAPLMLLGLSACGRSAGKTSEPTCPTEPIDAADSSTTPDPS 61
L+ A M +GLSAC G ++ T+ D+ADS TT +P+
Sbjct 10 ALLIAAAMAVGLSACSSGGGGEAKAPSGTQTADSADSGTTAEPA 53
>gi|319945031|ref|ZP_08019293.1| hypothetical protein HMPREF0551_2141 [Lautropia mirabilis ATCC
51599]
gi|319741601|gb|EFV94026.1| hypothetical protein HMPREF0551_2141 [Lautropia mirabilis ATCC
51599]
Length=226
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/56 (34%), Positives = 29/56 (52%), Gaps = 3/56 (5%)
Query 77 QTWTGSYDAAATQSGGVCGGTCNFHATVRFTVDEGQISGSVDQVYQAAMVAIATRP 132
T+ G+ DA G CGG+C + + V GQ + +D++YQ MV+ RP
Sbjct 94 HTYRGTPDAPGVVLGLDCGGSCE---GIVYRVRRGQEADIMDRIYQREMVSEVYRP 146
>gi|16182494|gb|AAL13505.1| GH02863p [Drosophila melanogaster]
Length=399
Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/71 (33%), Positives = 29/71 (41%), Gaps = 3/71 (4%)
Query 26 LLGLSACGRSAGKTSEPTCPTEPIDAADSSTTPDPSCVVRATEINGNGSRIQ-TWTGSYD 84
L G CGRS + EP C T +D T P+ R +IQ +W G YD
Sbjct 268 LCGNFLCGRSPNEDEEPECETLDVDHGYFETDVWPTLANRVPAF--ESVKIQSSWAGFYD 325
Query 85 AAATQSGGVCG 95
+ GV G
Sbjct 326 HNTFDANGVIG 336
>gi|195331891|ref|XP_002032632.1| GM20893 [Drosophila sechellia]
gi|194124602|gb|EDW46645.1| GM20893 [Drosophila sechellia]
Length=440
Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/71 (31%), Positives = 29/71 (41%), Gaps = 3/71 (4%)
Query 26 LLGLSACGRSAGKTSEPTCPTEPIDAADSSTTPDPSCVVRATEINGNGSRIQ-TWTGSYD 84
L G CGRS + EP C T +D T P+ R +IQ +W G YD
Sbjct 309 LCGNFLCGRSPNEDEEPECETLDVDHGYFETDVWPTLAKRVPAF--ESVKIQSSWAGFYD 366
Query 85 AAATQSGGVCG 95
+ G+ G
Sbjct 367 HNTFDANGIIG 377
>gi|344344916|ref|ZP_08775775.1| diguanylate cyclase [Marichromatium purpuratum 984]
gi|343803610|gb|EGV21517.1| diguanylate cyclase [Marichromatium purpuratum 984]
Length=549
Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/61 (37%), Positives = 30/61 (50%), Gaps = 2/61 (3%)
Query 20 VAAPLMLLGLSACGRSAGKTSEPTCPTEPIDAADSSTTPDPSCVVRATEINGNGSRI-QT 78
VA L+ L +SACG A PTEPI D+ P P + R + G+G R+ +
Sbjct 291 VADELLTLFMSACGSEAVALQLDDGPTEPIRRGDAPAEPTPD-LPRLEIVGGDGGRVGEV 349
Query 79 W 79
W
Sbjct 350 W 350
>gi|218189511|gb|EEC71938.1| hypothetical protein OsI_04750 [Oryza sativa Indica Group]
Length=426
Score = 34.3 bits (77), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/106 (28%), Positives = 44/106 (42%), Gaps = 28/106 (26%)
Query 17 LGLVAAPLMLLGLSACGRSAGK---------TSEPTCPTEPIDAADSSTTPDPSCVVRAT 67
+GL AP +GL + G++ GK S T PTE +D + + DPS ++R+
Sbjct 157 IGLENAPAAFVGLFS-GKNVGKQVAFPSVSLASMETAPTEDLDTSVKRSLIDPSGILRS- 214
Query 68 EINGNGSRIQTWTGSYDAAATQSGGVCGGTCNFHATVRFTVDEGQI 113
+W S D G CNF + + DE +I
Sbjct 215 ----------SWKFSQD-------GTTNSICNFMGVICWNPDENRI 243
>gi|253827056|ref|ZP_04869941.1| ABC transporter, periplasmic binding protein [Helicobacter canadensis
MIT 98-5491]
gi|313141250|ref|ZP_07803443.1| abc-transport periplasmic protein [Helicobacter canadensis MIT
98-5491]
gi|253510462|gb|EES89121.1| ABC transporter, periplasmic binding protein [Helicobacter canadensis
MIT 98-5491]
gi|313130281|gb|EFR47898.1| abc-transport periplasmic protein [Helicobacter canadensis MIT
98-5491]
Length=270
Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/56 (40%), Positives = 30/56 (54%), Gaps = 8/56 (14%)
Query 9 VFEKLASILGLVAAPLMLLGLSACGRSAGKTSEPTCPTEPIDAADSSTTPDPSCVV 64
+F+K+ SI GLV +L S CG S KT+ T T+ I A TP+P V+
Sbjct 1 MFKKVLSIFGLVG----ILAFSGCGDSKEKTATQTTETKLIVGA----TPEPHAVI 48
>gi|222619657|gb|EEE55789.1| hypothetical protein OsJ_04371 [Oryza sativa Japonica Group]
Length=426
Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 29/106 (28%), Positives = 44/106 (42%), Gaps = 28/106 (26%)
Query 17 LGLVAAPLMLLGLSACGRSAGK---------TSEPTCPTEPIDAADSSTTPDPSCVVRAT 67
+GL AP +GL + G++ GK S T PTE +D + + DPS ++R+
Sbjct 157 IGLENAPAAFVGLFS-GKNVGKQVAFPSVSLASMETAPTEDLDTSVKRSLIDPSGILRS- 214
Query 68 EINGNGSRIQTWTGSYDAAATQSGGVCGGTCNFHATVRFTVDEGQI 113
+W S D G CNF + + DE +I
Sbjct 215 ----------SWKFSQD-------GTTNSICNFMGVICWNPDENRI 243
Lambda K H
0.315 0.129 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131443546824
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40