BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2365c
Length=113
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609502|ref|NP_216881.1| hypothetical protein Rv2365c [Mycob... 207 5e-52
gi|148823568|ref|YP_001288322.1| hypothetical protein TBFG_12391... 204 3e-51
gi|15841877|ref|NP_336914.1| hypothetical protein MT2434 [Mycoba... 165 2e-39
gi|120404787|ref|YP_954616.1| hypothetical protein Mvan_3829 [My... 136 8e-31
gi|118471437|ref|YP_888766.1| hypothetical protein MSMEG_4494 [M... 127 4e-28
gi|15827259|ref|NP_301522.1| hypothetical protein ML0630 [Mycoba... 124 6e-27
gi|169628761|ref|YP_001702410.1| hypothetical protein MAB_1671 [... 124 7e-27
gi|145223296|ref|YP_001133974.1| hypothetical protein Mflv_2709 ... 122 1e-26
gi|343924052|ref|ZP_08763615.1| hypothetical protein GOALK_002_0... 119 2e-25
gi|240172992|ref|ZP_04751650.1| hypothetical protein MkanA1_2700... 108 2e-22
gi|54023402|ref|YP_117644.1| hypothetical protein nfa14350 [Noca... 107 6e-22
gi|262203046|ref|YP_003274254.1| cytidine deaminase [Gordonia br... 97.8 4e-19
gi|226360375|ref|YP_002778153.1| hypothetical protein ROP_09610 ... 95.1 3e-18
gi|108800419|ref|YP_640616.1| hypothetical protein Mmcs_3453 [My... 89.7 1e-16
gi|331698253|ref|YP_004334492.1| cytidine deaminase [Pseudonocar... 89.7 1e-16
gi|119716147|ref|YP_923112.1| hypothetical protein Noca_1915 [No... 82.4 2e-14
gi|145595962|ref|YP_001160259.1| hypothetical protein Strop_3450... 82.4 2e-14
gi|269127451|ref|YP_003300821.1| hypothetical protein Tcur_3244 ... 81.3 4e-14
gi|257055403|ref|YP_003133235.1| hypothetical protein Svir_13610... 80.5 7e-14
gi|291302082|ref|YP_003513360.1| hypothetical protein Snas_4624 ... 79.3 2e-13
gi|345015089|ref|YP_004817443.1| hypothetical protein Strvi_7833... 79.3 2e-13
gi|296140453|ref|YP_003647696.1| hypothetical protein Tpau_2759 ... 79.0 2e-13
gi|134098072|ref|YP_001103733.1| hypothetical protein SACE_1486 ... 77.0 8e-13
gi|302528835|ref|ZP_07281177.1| predicted protein [Streptomyces ... 75.5 2e-12
gi|271963830|ref|YP_003338026.1| hypothetical protein Sros_2302 ... 75.5 2e-12
gi|302545483|ref|ZP_07297825.1| putative cytidine deaminase [Str... 75.5 3e-12
gi|326333968|ref|ZP_08200198.1| putative cytidine deaminase (Cyt... 74.7 4e-12
gi|302869291|ref|YP_003837928.1| hypothetical protein Micau_4843... 74.7 4e-12
gi|238060556|ref|ZP_04605265.1| hypothetical protein MCAG_01522 ... 73.6 8e-12
gi|302560728|ref|ZP_07313070.1| cytidine deaminase [Streptomyces... 73.2 1e-11
gi|337765592|emb|CCB74301.1| conserved protein of unknown functi... 72.0 3e-11
gi|289771725|ref|ZP_06531103.1| conserved hypothetical protein [... 72.0 3e-11
gi|302551320|ref|ZP_07303662.1| conserved hypothetical protein [... 71.6 4e-11
gi|21220997|ref|NP_626776.1| hypothetical protein SCO2538 [Strep... 71.2 4e-11
gi|256396153|ref|YP_003117717.1| hypothetical protein Caci_7046 ... 71.2 4e-11
gi|297199573|ref|ZP_06916970.1| conserved hypothetical protein [... 71.2 4e-11
gi|291439746|ref|ZP_06579136.1| conserved hypothetical protein [... 71.2 5e-11
gi|111018249|ref|YP_701221.1| hypothetical protein RHA1_ro01239 ... 70.9 6e-11
gi|29832132|ref|NP_826766.1| hypothetical protein SAV_5589 [Stre... 70.5 7e-11
gi|297194460|ref|ZP_06911858.1| conserved hypothetical protein [... 70.5 7e-11
gi|294629271|ref|ZP_06707831.1| cytidine deaminase [Streptomyces... 69.3 2e-10
gi|297160578|gb|ADI10290.1| hypothetical protein SBI_07170 [Stre... 68.9 2e-10
gi|329934649|ref|ZP_08284690.1| hypothetical protein SGM_0402 [S... 68.9 2e-10
gi|239987516|ref|ZP_04708180.1| hypothetical protein SrosN1_0944... 68.9 3e-10
gi|159039360|ref|YP_001538613.1| hypothetical protein Sare_3829 ... 68.6 3e-10
gi|256375390|ref|YP_003099050.1| cytidine deaminase [Actinosynne... 67.8 5e-10
gi|291451236|ref|ZP_06590626.1| conserved hypothetical protein [... 67.4 7e-10
gi|302534332|ref|ZP_07286674.1| conserved hypothetical protein [... 67.0 8e-10
gi|330469593|ref|YP_004407336.1| hypothetical protein VAB18032_2... 67.0 9e-10
gi|328882364|emb|CCA55603.1| hypothetical protein SVEN_2317 [Str... 66.6 1e-09
>gi|15609502|ref|NP_216881.1| hypothetical protein Rv2365c [Mycobacterium tuberculosis H37Rv]
gi|31793542|ref|NP_856035.1| hypothetical protein Mb2386c [Mycobacterium bovis AF2122/97]
gi|121638244|ref|YP_978468.1| hypothetical protein BCG_2379c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
36 more sequence titles
Length=113
Score = 207 bits (526), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 113/113 (100%), Positives = 113/113 (100%), Gaps = 0/113 (0%)
Query 1 MMRRPITLAEQLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTG 60
MMRRPITLAEQLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTG
Sbjct 1 MMRRPITLAEQLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTG 60
Query 61 LQAAVAAAVSSGATGLQAAVLVAGSVDDPGIAAVRELAPTAAIIVTDRAGNPL 113
LQAAVAAAVSSGATGLQAAVLVAGSVDDPGIAAVRELAPTAAIIVTDRAGNPL
Sbjct 61 LQAAVAAAVSSGATGLQAAVLVAGSVDDPGIAAVRELAPTAAIIVTDRAGNPL 113
>gi|148823568|ref|YP_001288322.1| hypothetical protein TBFG_12391 [Mycobacterium tuberculosis F11]
gi|167968757|ref|ZP_02551034.1| hypothetical protein MtubH3_12250 [Mycobacterium tuberculosis
H37Ra]
gi|254365142|ref|ZP_04981188.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
37 more sequence titles
Length=112
Score = 204 bits (520), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 112/112 (100%), Positives = 112/112 (100%), Gaps = 0/112 (0%)
Query 2 MRRPITLAEQLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGL 61
MRRPITLAEQLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGL
Sbjct 1 MRRPITLAEQLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGL 60
Query 62 QAAVAAAVSSGATGLQAAVLVAGSVDDPGIAAVRELAPTAAIIVTDRAGNPL 113
QAAVAAAVSSGATGLQAAVLVAGSVDDPGIAAVRELAPTAAIIVTDRAGNPL
Sbjct 61 QAAVAAAVSSGATGLQAAVLVAGSVDDPGIAAVRELAPTAAIIVTDRAGNPL 112
>gi|15841877|ref|NP_336914.1| hypothetical protein MT2434 [Mycobacterium tuberculosis CDC1551]
gi|13882144|gb|AAK46728.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
Length=93
Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/93 (99%), Positives = 93/93 (100%), Gaps = 0/93 (0%)
Query 21 VLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVSSGATGLQAAV 80
+LARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVSSGATGLQAAV
Sbjct 1 MLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVSSGATGLQAAV 60
Query 81 LVAGSVDDPGIAAVRELAPTAAIIVTDRAGNPL 113
LVAGSVDDPGIAAVRELAPTAAIIVTDRAGNPL
Sbjct 61 LVAGSVDDPGIAAVRELAPTAAIIVTDRAGNPL 93
>gi|120404787|ref|YP_954616.1| hypothetical protein Mvan_3829 [Mycobacterium vanbaalenii PYR-1]
gi|119957605|gb|ABM14610.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=105
Score = 136 bits (343), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 82/102 (81%), Positives = 89/102 (88%), Gaps = 0/102 (0%)
Query 12 LDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVSS 71
LD EDAKLVVLAR AM+RAEAG GAAVRD DGRTYA APV L AL LT LQAA+AAAVSS
Sbjct 4 LDPEDAKLVVLARGAMSRAEAGDGAAVRDADGRTYAGAPVTLDALTLTALQAAIAAAVSS 63
Query 72 GATGLQAAVLVAGSVDDPGIAAVRELAPTAAIIVTDRAGNPL 113
GAT L+AAVLV GS DDPGIAAVREL+P AA+IVTDR+G+PL
Sbjct 64 GATLLEAAVLVGGSADDPGIAAVRELSPAAAVIVTDRSGHPL 105
>gi|118471437|ref|YP_888766.1| hypothetical protein MSMEG_4494 [Mycobacterium smegmatis str.
MC2 155]
gi|118172724|gb|ABK73620.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=105
Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 79/103 (77%), Positives = 91/103 (89%), Gaps = 0/103 (0%)
Query 11 QLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVS 70
+LDAEDAKLVVLAR AMARAEAG+GAAVRD DGRTYA APV L+AL+LT LQ+AVAAAVS
Sbjct 3 ELDAEDAKLVVLARGAMARAEAGSGAAVRDQDGRTYAGAPVTLAALQLTALQSAVAAAVS 62
Query 71 SGATGLQAAVLVAGSVDDPGIAAVRELAPTAAIIVTDRAGNPL 113
SGATG++AAVLV GS DD G+AAV+EL+ A +IVTDRAG P+
Sbjct 63 SGATGIEAAVLVGGSGDDAGVAAVKELSADATVIVTDRAGAPV 105
>gi|15827259|ref|NP_301522.1| hypothetical protein ML0630 [Mycobacterium leprae TN]
gi|221229737|ref|YP_002503153.1| hypothetical protein MLBr_00630 [Mycobacterium leprae Br4923]
gi|466987|gb|AAA17173.1| B1937_F3_101 [Mycobacterium leprae]
gi|13092808|emb|CAC30138.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219932844|emb|CAR70723.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=108
Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/106 (69%), Positives = 82/106 (78%), Gaps = 2/106 (1%)
Query 8 LAEQLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQ--AAV 65
+AE L+ EDAKLVVL RAAMAR EAG+GA VRD DGRTYAAAPV LS LEL GLQ AA
Sbjct 1 MAELLNTEDAKLVVLVRAAMARTEAGSGAVVRDFDGRTYAAAPVTLSTLELIGLQEEAAA 60
Query 66 AAAVSSGATGLQAAVLVAGSVDDPGIAAVRELAPTAAIIVTDRAGN 111
A + SS +GL+ VLVAGSVD+P IA VRELA TA +I+ DR GN
Sbjct 61 AFSASSVVSGLEVGVLVAGSVDEPDIAMVRELASTAVVILIDRNGN 106
>gi|169628761|ref|YP_001702410.1| hypothetical protein MAB_1671 [Mycobacterium abscessus ATCC 19977]
gi|169240728|emb|CAM61756.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=123
Score = 124 bits (310), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 77/101 (77%), Positives = 86/101 (86%), Gaps = 0/101 (0%)
Query 12 LDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVSS 71
LDAED KLVVLAR AM RAEA +GAAVRD DGRTYA APV+LS L LT LQAAVAAAVSS
Sbjct 19 LDAEDNKLVVLARGAMGRAEAKSGAAVRDGDGRTYAGAPVSLSQLSLTALQAAVAAAVSS 78
Query 72 GATGLQAAVLVAGSVDDPGIAAVRELAPTAAIIVTDRAGNP 112
GA+ ++AAVLV GS +DPGIAAVREL+P+A +IVTDR G P
Sbjct 79 GASVIEAAVLVGGSHEDPGIAAVRELSPSATVIVTDRTGVP 119
>gi|145223296|ref|YP_001133974.1| hypothetical protein Mflv_2709 [Mycobacterium gilvum PYR-GCK]
gi|315443756|ref|YP_004076635.1| hypothetical protein Mspyr1_21460 [Mycobacterium sp. Spyr1]
gi|145215782|gb|ABP45186.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
gi|315262059|gb|ADT98800.1| hypothetical protein Mspyr1_21460 [Mycobacterium sp. Spyr1]
Length=108
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/108 (75%), Positives = 91/108 (85%), Gaps = 0/108 (0%)
Query 6 ITLAEQLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAV 65
+T ++ L EDAKLVVLAR AMARA+AG+GAAVRD+DGRTYA APV L AL LT LQAAV
Sbjct 1 MTQSDALTDEDAKLVVLARGAMARADAGSGAAVRDLDGRTYAGAPVGLDALTLTALQAAV 60
Query 66 AAAVSSGATGLQAAVLVAGSVDDPGIAAVRELAPTAAIIVTDRAGNPL 113
AAAVSSGA GL+AAVLV GS DD G+AAVREL+ AA+IVTDRAG PL
Sbjct 61 AAAVSSGAAGLEAAVLVGGSADDAGVAAVRELSDGAAVIVTDRAGRPL 108
>gi|343924052|ref|ZP_08763615.1| hypothetical protein GOALK_002_00060 [Gordonia alkanivorans NBRC
16433]
gi|343765857|dbj|GAA10541.1| hypothetical protein GOALK_002_00060 [Gordonia alkanivorans NBRC
16433]
Length=114
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/105 (63%), Positives = 76/105 (73%), Gaps = 0/105 (0%)
Query 8 LAEQLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAA 67
+ E L ED KLVVLAR A+ARAEA +GAAVRD DGRTYA A V L L+GLQ AVA+
Sbjct 1 MTETLADEDQKLVVLARGALARAEARSGAAVRDGDGRTYAGAEVRTKTLTLSGLQVAVAS 60
Query 68 AVSSGATGLQAAVLVAGSVDDPGIAAVRELAPTAAIIVTDRAGNP 112
A+SSGAT +AAVLV G DDPG+A + EL+P A VTD AG P
Sbjct 61 AISSGATAFEAAVLVNGDSDDPGLATLHELSPQAYTYVTDAAGRP 105
>gi|240172992|ref|ZP_04751650.1| hypothetical protein MkanA1_27006 [Mycobacterium kansasii ATCC
12478]
Length=106
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/106 (75%), Positives = 88/106 (84%), Gaps = 0/106 (0%)
Query 8 LAEQLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAA 67
+AE D EDAKLV+LARAAMARA A +GAAVRD +GRTY A PV L AL LTGLQAAVAA
Sbjct 1 MAEPADPEDAKLVMLARAAMARAGADSGAAVRDHEGRTYVAVPVNLPALRLTGLQAAVAA 60
Query 68 AVSSGATGLQAAVLVAGSVDDPGIAAVRELAPTAAIIVTDRAGNPL 113
AVSSGA GL+AA LVAGSVDDPGIAA+REL+P A ++VTD G PL
Sbjct 61 AVSSGAIGLEAAALVAGSVDDPGIAALRELSPMAVVVVTDSTGTPL 106
>gi|54023402|ref|YP_117644.1| hypothetical protein nfa14350 [Nocardia farcinica IFM 10152]
gi|54014910|dbj|BAD56280.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=119
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/100 (66%), Positives = 76/100 (76%), Gaps = 0/100 (0%)
Query 11 QLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVS 70
+LDAED KLVVLAR A+ R AGAAVRD DGRTYAA V L+AL LT LQAAVAAA+S
Sbjct 3 ELDAEDTKLVVLARGALGRTGGTAGAAVRDTDGRTYAAGEVDLAALRLTALQAAVAAAIS 62
Query 71 SGATGLQAAVLVAGSVDDPGIAAVRELAPTAAIIVTDRAG 110
SGA G +AAV+V G DPG+ AVRE++ A II TD+AG
Sbjct 63 SGAEGFEAAVVVGGKFSDPGVTAVREVSGAARIIFTDKAG 102
>gi|262203046|ref|YP_003274254.1| cytidine deaminase [Gordonia bronchialis DSM 43247]
gi|262086393|gb|ACY22361.1| cytidine deaminase [Gordonia bronchialis DSM 43247]
Length=113
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/102 (64%), Positives = 75/102 (74%), Gaps = 0/102 (0%)
Query 11 QLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVS 70
L ED KLVVLAR A+ARAEA AGAAVRD DGRTYA A V ++L L+ LQ AVA A+S
Sbjct 4 DLGDEDRKLVVLARGALARAEAPAGAAVRDADGRTYAGADVRTASLTLSALQVAVATALS 63
Query 71 SGATGLQAAVLVAGSVDDPGIAAVRELAPTAAIIVTDRAGNP 112
SGATG +AAVLV GS DDPG+A E++P A +TD AG P
Sbjct 64 SGATGFEAAVLVNGSADDPGLATFAEISPDAPAYLTDAAGTP 105
>gi|226360375|ref|YP_002778153.1| hypothetical protein ROP_09610 [Rhodococcus opacus B4]
gi|226238860|dbj|BAH49208.1| hypothetical protein [Rhodococcus opacus B4]
Length=110
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/93 (65%), Positives = 74/93 (80%), Gaps = 0/93 (0%)
Query 13 DAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVSSG 72
DAEDAKL+VLAR A R +G GAAVRD+DGRTY+A VAL++L LT LQAAVAAAVSSG
Sbjct 5 DAEDAKLIVLARGAFGRTGSGQGAAVRDLDGRTYSAGAVALTSLSLTALQAAVAAAVSSG 64
Query 73 ATGLQAAVLVAGSVDDPGIAAVRELAPTAAIIV 105
A G +AA ++ GS DDPGIAA+ E++ AA++
Sbjct 65 AEGFEAAAVIGGSPDDPGIAALHEVSAQAAVVF 97
>gi|108800419|ref|YP_640616.1| hypothetical protein Mmcs_3453 [Mycobacterium sp. MCS]
gi|119869548|ref|YP_939500.1| hypothetical protein Mkms_3516 [Mycobacterium sp. KMS]
gi|126436042|ref|YP_001071733.1| hypothetical protein Mjls_3464 [Mycobacterium sp. JLS]
gi|108770838|gb|ABG09560.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119695637|gb|ABL92710.1| conserved hypothetical protein [Mycobacterium sp. KMS]
gi|126235842|gb|ABN99242.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=106
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/103 (76%), Positives = 86/103 (84%), Gaps = 0/103 (0%)
Query 11 QLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVS 70
+LD ED KLVVLAR AMARAEA GAAVRD+DGRTYA APVAL+AL LT LQAAVAAAVS
Sbjct 3 ELDPEDDKLVVLARGAMARAEAAGGAAVRDLDGRTYAGAPVALNALPLTALQAAVAAAVS 62
Query 71 SGATGLQAAVLVAGSVDDPGIAAVRELAPTAAIIVTDRAGNPL 113
SGA G +AAVLV GS DD G+AAVREL+ AA+IVTDR+G L
Sbjct 63 SGAAGFEAAVLVGGSADDAGVAAVRELSADAAVIVTDRSGKVL 105
>gi|331698253|ref|YP_004334492.1| cytidine deaminase [Pseudonocardia dioxanivorans CB1190]
gi|326952942|gb|AEA26639.1| cytidine deaminase [Pseudonocardia dioxanivorans CB1190]
Length=122
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/102 (64%), Positives = 78/102 (77%), Gaps = 2/102 (1%)
Query 11 QLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVS 70
LD EDAK+V LAR++ AR A GAAVRD DGRTYAAA V L +L+LT LQAAVAAAVS
Sbjct 3 DLDPEDAKIVTLARSSRARTGAAEGAAVRDTDGRTYAAATVGLPSLQLTALQAAVAAAVS 62
Query 71 SGATGLQAAVLVAGS--VDDPGIAAVRELAPTAAIIVTDRAG 110
SGA GL+AA +V+ S VDD +AAVR+LAP A +I+ D +G
Sbjct 63 SGAPGLEAAAVVSTSDAVDDASVAAVRDLAPAAPVILADASG 104
>gi|119716147|ref|YP_923112.1| hypothetical protein Noca_1915 [Nocardioides sp. JS614]
gi|119536808|gb|ABL81425.1| conserved hypothetical protein [Nocardioides sp. JS614]
Length=116
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/103 (53%), Positives = 69/103 (67%), Gaps = 5/103 (4%)
Query 12 LDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVSS 71
L AEDAKLV LARA AR A GAAVRD DGRTYAAA V L +L+++ L VA AV+S
Sbjct 7 LTAEDAKLVTLARATRARTGAAEGAAVRDADGRTYAAATVDLPSLQVSALGVCVAMAVAS 66
Query 72 GATGLQAAVLV--AGSVDDPGIAAVRELAPTAAIIVTDRAGNP 112
GA GL+AAV++ A + DP + A+R+L T ++ G+P
Sbjct 67 GAKGLEAAVVLTDAAGLADPDLGALRDLGGTGVVV---HRGDP 106
>gi|145595962|ref|YP_001160259.1| hypothetical protein Strop_3450 [Salinispora tropica CNB-440]
gi|145305299|gb|ABP55881.1| hypothetical protein Strop_3450 [Salinispora tropica CNB-440]
Length=125
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/105 (58%), Positives = 72/105 (69%), Gaps = 4/105 (3%)
Query 5 PITLAE--QLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQ 62
PIT + +L AEDAKLVVLAR A R A GAAVRD DGRTYAAA V+L +L LT LQ
Sbjct 8 PITGSTPVELTAEDAKLVVLARGARGRVGAVEGAAVRDQDGRTYAAASVSLPSLALTALQ 67
Query 63 AAVAAAVSSGATGLQAAVLV--AGSVDDPGIAAVRELAPTAAIIV 105
AV +A ++G T L+AA +V A ++D G AAVR+LA A I V
Sbjct 68 LAVGSAAAAGCTRLEAAAVVTEASTLDGAGHAAVRDLAADAPIHV 112
>gi|269127451|ref|YP_003300821.1| hypothetical protein Tcur_3244 [Thermomonospora curvata DSM 43183]
gi|268312409|gb|ACY98783.1| hypothetical protein Tcur_3244 [Thermomonospora curvata DSM 43183]
Length=112
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/97 (55%), Positives = 66/97 (69%), Gaps = 2/97 (2%)
Query 11 QLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVS 70
++ AEDAK++ LARA+ AR A GAAVRD GRTYAA V L +L+L+ LQ AVA AVS
Sbjct 3 EISAEDAKIITLARASRARTGAAEGAAVRDETGRTYAATSVDLPSLKLSALQVAVAMAVS 62
Query 71 SGATGLQAAVLVAG--SVDDPGIAAVRELAPTAAIIV 105
SGA L+AA LV V D +AAVR+L A I++
Sbjct 63 SGAEDLEAAALVTADEQVRDADVAAVRDLGRKAPILL 99
>gi|257055403|ref|YP_003133235.1| hypothetical protein Svir_13610 [Saccharomonospora viridis DSM
43017]
gi|256585275|gb|ACU96408.1| hypothetical protein Svir_13610 [Saccharomonospora viridis DSM
43017]
Length=111
Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/102 (56%), Positives = 69/102 (68%), Gaps = 2/102 (1%)
Query 12 LDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVSS 71
LD ED KL+ LAR+A AR +A GAAVRD DGRTY A V L +L+LT LQAAVAAAVSS
Sbjct 4 LDPEDEKLITLARSARARTQAAEGAAVRDTDGRTYVATTVELPSLKLTALQAAVAAAVSS 63
Query 72 GATGLQAAVLVA--GSVDDPGIAAVRELAPTAAIIVTDRAGN 111
G L AAV+V +V + + AVR+LA A I+ D +G
Sbjct 64 GVESLDAAVVVTEENTVQEASVRAVRDLAAQAPILRADSSGT 105
>gi|291302082|ref|YP_003513360.1| hypothetical protein Snas_4624 [Stackebrandtia nassauensis DSM
44728]
gi|290571302|gb|ADD44267.1| hypothetical protein Snas_4624 [Stackebrandtia nassauensis DSM
44728]
Length=108
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/96 (56%), Positives = 69/96 (72%), Gaps = 1/96 (1%)
Query 12 LDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVSS 71
LDAED KLV LARAA +R A + AVRD DGR+Y AA ++L +L+LTGLQ AVA A ++
Sbjct 5 LDAEDQKLVTLARAAASRIGASSAGAVRDDDGRSYVAASISLPSLQLTGLQLAVAQAAAA 64
Query 72 GATGLQAAVLVAGSVDDPGIAAVRELAPTAAIIVTD 107
GA L+AA+ + G+ D PG AAVR+L+ +A I D
Sbjct 65 GAETLEAAIFL-GTTDAPGTAAVRDLSRSAPIYAVD 99
>gi|345015089|ref|YP_004817443.1| hypothetical protein Strvi_7833 [Streptomyces violaceusniger
Tu 4113]
gi|344041438|gb|AEM87163.1| hypothetical protein Strvi_7833 [Streptomyces violaceusniger
Tu 4113]
Length=120
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/91 (58%), Positives = 63/91 (70%), Gaps = 2/91 (2%)
Query 9 AEQLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAA 68
A QLD ED K++ LAR+A AR GAAVRD GRTY A VAL +L+L+ L+ AVA A
Sbjct 8 AAQLDPEDRKIITLARSARARNSVVEGAAVRDETGRTYVAGTVALDSLKLSALRTAVAMA 67
Query 69 VSSGATGLQAAVLV--AGSVDDPGIAAVREL 97
V+SGAT L+AA +V A SV D AAVR+L
Sbjct 68 VASGATSLEAAAVVTEAESVSDEDRAAVRDL 98
>gi|296140453|ref|YP_003647696.1| hypothetical protein Tpau_2759 [Tsukamurella paurometabola DSM
20162]
gi|296028587|gb|ADG79357.1| conserved hypothetical protein [Tsukamurella paurometabola DSM
20162]
Length=107
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/103 (62%), Positives = 77/103 (75%), Gaps = 3/103 (2%)
Query 11 QLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVS 70
++ ED KL+ LAR AMARA A GAAVRD+DGR+YA APVAL+AL LT LQ AVA AVS
Sbjct 3 EIGEEDRKLMTLARGAMARAGADHGAAVRDLDGRSYAGAPVALAALSLTALQVAVATAVS 62
Query 71 SGATGLQAAVLVAGSVD--DPGIAAVRELAPTAAIIVTDRAGN 111
SGA G +AAVL+ G VD DPG+AA+RE+ A +++ D AG
Sbjct 63 SGAQGFEAAVLI-GEVDGADPGVAALREVTHEAHVLLVDAAGE 104
>gi|134098072|ref|YP_001103733.1| hypothetical protein SACE_1486 [Saccharopolyspora erythraea NRRL
2338]
gi|291007469|ref|ZP_06565442.1| hypothetical protein SeryN2_23338 [Saccharopolyspora erythraea
NRRL 2338]
gi|133910695|emb|CAM00808.1| hypothetical protein SACE_1486 [Saccharopolyspora erythraea NRRL
2338]
Length=121
Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/104 (51%), Positives = 68/104 (66%), Gaps = 2/104 (1%)
Query 10 EQLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAV 69
+ +D EDAK+V LAR+A AR A GAAVRD DGRTYAA V L +L LT LQ AVA AV
Sbjct 11 QDIDPEDAKIVTLARSARARTGAAEGAAVRDTDGRTYAACTVELPSLRLTALQVAVAMAV 70
Query 70 SSGATGLQAAVLVAGSVDD--PGIAAVRELAPTAAIIVTDRAGN 111
+SGA GL+AA +V + +AAVR++ A ++ D G+
Sbjct 71 ASGAEGLEAAAVVTDADAVGAESVAAVRDVGAKAPVLRADARGD 114
>gi|302528835|ref|ZP_07281177.1| predicted protein [Streptomyces sp. AA4]
gi|302437730|gb|EFL09546.1| predicted protein [Streptomyces sp. AA4]
Length=112
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/101 (56%), Positives = 68/101 (68%), Gaps = 2/101 (1%)
Query 12 LDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVSS 71
LDAED KLV LAR+A AR A GAAVRD DGRTYAA V +LT +QAAVAAA+SS
Sbjct 4 LDAEDQKLVTLARSARARTGADEGAAVRDTDGRTYAATTVDQPTFKLTAVQAAVAAALSS 63
Query 72 GATGLQAAVLVAGS--VDDPGIAAVRELAPTAAIIVTDRAG 110
GA GL+AA +V V + + AVR+++ A II D +G
Sbjct 64 GAEGLEAAAVVTADALVAEASVHAVRDVSKAAPIIFADPSG 104
>gi|271963830|ref|YP_003338026.1| hypothetical protein Sros_2302 [Streptosporangium roseum DSM
43021]
gi|270507005|gb|ACZ85283.1| hypothetical protein Sros_2302 [Streptosporangium roseum DSM
43021]
Length=130
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/89 (59%), Positives = 60/89 (68%), Gaps = 4/89 (4%)
Query 12 LDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVSS 71
LD ED K++VLAR+A AR A GAAVRD GRTY+A VAL +L L+ LQ AVA AVSS
Sbjct 26 LDPEDNKIIVLARSARARNGAAEGAAVRDETGRTYSATNVALPSLTLSALQVAVAMAVSS 85
Query 72 GATGLQAAVLVAGSVDDPGIA---AVREL 97
GA L+AA LV D P A AVRE+
Sbjct 86 GAESLEAAALVTAG-DGPADADARAVREM 113
>gi|302545483|ref|ZP_07297825.1| putative cytidine deaminase [Streptomyces hygroscopicus ATCC
53653]
gi|302463101|gb|EFL26194.1| putative cytidine deaminase [Streptomyces himastatinicus ATCC
53653]
Length=124
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/102 (51%), Positives = 66/102 (65%), Gaps = 6/102 (5%)
Query 2 MRRPITL----AEQLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALE 57
M RP+ + A QLD ED K++ LAR+A AR GAAVRD GRTY A VAL +L+
Sbjct 1 MARPMLIRMSDAAQLDPEDRKIITLARSARARNGVAEGAAVRDETGRTYVAGTVALDSLQ 60
Query 58 LTGLQAAVAAAVSSGATGLQAAVLV--AGSVDDPGIAAVREL 97
L+ ++ AVA AV+SGA L+AA LV A + D AAVR+L
Sbjct 61 LSAVRTAVAMAVASGAKSLEAAALVTDAETATDEDRAAVRDL 102
>gi|326333968|ref|ZP_08200198.1| putative cytidine deaminase (Cytidine aminohydrolase) (CDA) [Nocardioidaceae
bacterium Broad-1]
gi|325948247|gb|EGD40357.1| putative cytidine deaminase (Cytidine aminohydrolase) (CDA) [Nocardioidaceae
bacterium Broad-1]
Length=125
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/91 (54%), Positives = 63/91 (70%), Gaps = 4/91 (4%)
Query 11 QLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVS 70
+L AED KLV LARA AR A GAAVRD+DGRTYAAA V L +L+++ + VA AV+
Sbjct 6 ELSAEDRKLVTLARATRARTGAAEGAAVRDLDGRTYAAATVDLPSLQVSAVGVCVAMAVA 65
Query 71 SGATGLQAAVLVAGSVDDPG---IAAVRELA 98
SG+ GL+ AV+V G + P +AAV+E A
Sbjct 66 SGSKGLE-AVVVLGEAEAPAANDLAAVKEFA 95
>gi|302869291|ref|YP_003837928.1| hypothetical protein Micau_4843 [Micromonospora aurantiaca ATCC
27029]
gi|315504234|ref|YP_004083121.1| hypothetical protein ML5_3456 [Micromonospora sp. L5]
gi|302572150|gb|ADL48352.1| hypothetical protein Micau_4843 [Micromonospora aurantiaca ATCC
27029]
gi|315410853|gb|ADU08970.1| hypothetical protein ML5_3456 [Micromonospora sp. L5]
Length=128
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/97 (61%), Positives = 73/97 (76%), Gaps = 2/97 (2%)
Query 11 QLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVS 70
+L AEDAKLVVLAR A +R A GAAVRD DGRTYAAA VAL +L LT LQ AVA+AV+
Sbjct 19 ELSAEDAKLVVLARGARSRVAAVEGAAVRDQDGRTYAAASVALPSLTLTALQLAVASAVA 78
Query 71 SGATGLQAAVLV--AGSVDDPGIAAVRELAPTAAIIV 105
+GA+ L+AAV+V A ++D G AAVR+L+ A + V
Sbjct 79 AGASRLEAAVVVTEASTLDGAGHAAVRDLSADAPVHV 115
>gi|238060556|ref|ZP_04605265.1| hypothetical protein MCAG_01522 [Micromonospora sp. ATCC 39149]
gi|237882367|gb|EEP71195.1| hypothetical protein MCAG_01522 [Micromonospora sp. ATCC 39149]
Length=128
Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/97 (59%), Positives = 70/97 (73%), Gaps = 2/97 (2%)
Query 11 QLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVS 70
+L AED KLV+LAR A R A GA+VRD DGRTYAAA V+L +L LT LQ AVA+AV+
Sbjct 19 ELSAEDGKLVILARGARGRVGAVEGASVRDQDGRTYAAASVSLPSLTLTALQLAVASAVA 78
Query 71 SGATGLQAAVLV--AGSVDDPGIAAVRELAPTAAIIV 105
+GAT L+AAV+V A ++D G AAVR+L A I V
Sbjct 79 AGATRLEAAVVVTEASTLDGAGHAAVRDLTADAPIHV 115
>gi|302560728|ref|ZP_07313070.1| cytidine deaminase [Streptomyces griseoflavus Tu4000]
gi|302478346|gb|EFL41439.1| cytidine deaminase [Streptomyces griseoflavus Tu4000]
Length=117
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/88 (57%), Positives = 60/88 (69%), Gaps = 2/88 (2%)
Query 12 LDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVSS 71
LD ED K+V LAR+ AR GAAVRD GRTYAA VAL +L L+ L+ AVA AV+S
Sbjct 7 LDPEDRKIVTLARSVRARNGVPEGAAVRDETGRTYAAGTVALDSLRLSALRTAVAMAVAS 66
Query 72 GATGLQAAVLV--AGSVDDPGIAAVREL 97
GAT L+AA +V A SV +AAVR+L
Sbjct 67 GATSLEAAAVVTEAESVPAEDLAAVRDL 94
>gi|337765592|emb|CCB74301.1| conserved protein of unknown function [Streptomyces cattleya
NRRL 8057]
Length=122
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/108 (50%), Positives = 68/108 (63%), Gaps = 5/108 (4%)
Query 9 AEQLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAA 68
A +D ED K++ LAR+A AR GAAVRD GRTY A VAL++LEL+ L+ AVA A
Sbjct 8 AASVDPEDRKIITLARSARARNGVPEGAAVRDETGRTYVAGTVALASLELSALRTAVAMA 67
Query 69 VSSGATGLQAAVLV-AGSVDDPG---IAAVREL-APTAAIIVTDRAGN 111
V+SGA L+AA +V A D P +AAVR+L P + + D AG
Sbjct 68 VASGAMSLEAAAVVSAPGPDAPAEADLAAVRDLGGPGTPVFLADPAGE 115
>gi|289771725|ref|ZP_06531103.1| conserved hypothetical protein [Streptomyces lividans TK24]
gi|289701924|gb|EFD69353.1| conserved hypothetical protein [Streptomyces lividans TK24]
Length=118
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/88 (56%), Positives = 59/88 (68%), Gaps = 2/88 (2%)
Query 12 LDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVSS 71
LD ED K+V LAR+A AR GAAVRD GRTY A VAL +L+L+ L+ AVA AV+S
Sbjct 8 LDPEDRKIVTLARSARARNGVPEGAAVRDETGRTYVAGTVALDSLKLSALRTAVAMAVAS 67
Query 72 GATGLQAAVLV--AGSVDDPGIAAVREL 97
GA L+AA +V A S D AAVR+L
Sbjct 68 GAKSLEAAAVVTEAESASDEDRAAVRDL 95
>gi|302551320|ref|ZP_07303662.1| conserved hypothetical protein [Streptomyces viridochromogenes
DSM 40736]
gi|302468938|gb|EFL32031.1| conserved hypothetical protein [Streptomyces viridochromogenes
DSM 40736]
Length=125
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/98 (54%), Positives = 63/98 (65%), Gaps = 6/98 (6%)
Query 4 RPITLAEQLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQA 63
R +T + LD ED K+V LAR+A AR GAAVRD GRTY A VAL +L+L+ LQ
Sbjct 7 RIMTDSSALDPEDRKIVTLARSARARNGVPEGAAVRDETGRTYVAVTVALDSLKLSALQT 66
Query 64 AVAAAVSSGATGLQAAVLV----AGSVDDPGIAAVREL 97
AVA AV+SGA L+AA LV S +D AAVR+L
Sbjct 67 AVAMAVASGAGSLEAAALVTEAETASAEDR--AAVRDL 102
>gi|21220997|ref|NP_626776.1| hypothetical protein SCO2538 [Streptomyces coelicolor A3(2)]
gi|6714752|emb|CAB66216.1| hypothetical protein SCC77.05 [Streptomyces coelicolor A3(2)]
Length=132
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/88 (56%), Positives = 59/88 (68%), Gaps = 2/88 (2%)
Query 12 LDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVSS 71
LD ED K+V LAR+A AR GAAVRD GRTY A VAL +L+L+ L+ AVA AV+S
Sbjct 22 LDPEDRKIVTLARSARARNGVPEGAAVRDETGRTYVAGTVALDSLKLSALRTAVAMAVAS 81
Query 72 GATGLQAAVLV--AGSVDDPGIAAVREL 97
GA L+AA +V A S D AAVR+L
Sbjct 82 GAKSLEAAAVVTEAESASDEDRAAVRDL 109
>gi|256396153|ref|YP_003117717.1| hypothetical protein Caci_7046 [Catenulispora acidiphila DSM
44928]
gi|256362379|gb|ACU75876.1| conserved hypothetical protein [Catenulispora acidiphila DSM
44928]
Length=109
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/72 (62%), Positives = 50/72 (70%), Gaps = 0/72 (0%)
Query 11 QLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVS 70
QLD E+AKL LA+A AR A GAA+RD GRTY A V L AL+L+ LQ AVA AV
Sbjct 5 QLDPENAKLHTLAKAQRARNGAAEGAALRDETGRTYVATTVELPALKLSALQTAVAMAVV 64
Query 71 SGATGLQAAVLV 82
SGA L+AAVLV
Sbjct 65 SGARALEAAVLV 76
>gi|297199573|ref|ZP_06916970.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
gi|197713499|gb|EDY57533.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
Length=117
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/97 (52%), Positives = 63/97 (65%), Gaps = 3/97 (3%)
Query 12 LDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVSS 71
LD ED K+V LAR+A AR GAAVRD GRTY A V L++L+L+ LQ AVA AV+S
Sbjct 7 LDPEDRKIVTLARSARARNGVPEGAAVRDETGRTYVAGTVELASLKLSALQTAVAMAVAS 66
Query 72 GATGLQAAVLV--AGSVDDPGIAAVREL-APTAAIIV 105
GA L+AA +V A S + AAVR+L P ++V
Sbjct 67 GAKSLEAAAVVTEAESASEQDRAAVRDLGGPQTPVLV 103
>gi|291439746|ref|ZP_06579136.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC
14672]
gi|291342641|gb|EFE69597.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC
14672]
Length=116
Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/88 (56%), Positives = 59/88 (68%), Gaps = 2/88 (2%)
Query 12 LDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVSS 71
LD ED K+V LAR+ AR GAAVRD +GRTYAA VAL +L+L+ LQ AVA AV+S
Sbjct 6 LDPEDRKIVTLARSVRARNGVPEGAAVRDENGRTYAAGTVALDSLKLSALQTAVAMAVAS 65
Query 72 GATGLQAAVLV--AGSVDDPGIAAVREL 97
GA L+AA +V A S AAVR+L
Sbjct 66 GAKSLEAAAVVTEAESASAEDRAAVRDL 93
>gi|111018249|ref|YP_701221.1| hypothetical protein RHA1_ro01239 [Rhodococcus jostii RHA1]
gi|110817779|gb|ABG93063.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=110
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/95 (63%), Positives = 74/95 (78%), Gaps = 0/95 (0%)
Query 11 QLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVS 70
+L ED KLVVLAR A R +G GAAVRD+DGRTY+A VAL+AL LT LQAAVAAAVS
Sbjct 3 ELGDEDTKLVVLARGAFGRTGSGQGAAVRDLDGRTYSAGAVALAALSLTALQAAVAAAVS 62
Query 71 SGATGLQAAVLVAGSVDDPGIAAVRELAPTAAIIV 105
SGA G +AAV++ G+ +DPGIAA+ E++ AA++
Sbjct 63 SGAEGFEAAVVIGGAPEDPGIAALHEVSAQAAVVF 97
>gi|29832132|ref|NP_826766.1| hypothetical protein SAV_5589 [Streptomyces avermitilis MA-4680]
gi|29609250|dbj|BAC73301.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length=117
Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/82 (54%), Positives = 55/82 (68%), Gaps = 0/82 (0%)
Query 6 ITLAEQLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAV 65
+T + LD ED K+V LAR+A AR GAAVRD GRTY A VAL +L+L+ LQ AV
Sbjct 1 MTESSALDPEDRKIVTLARSARARNGVPEGAAVRDETGRTYVAGTVALDSLKLSALQTAV 60
Query 66 AAAVSSGATGLQAAVLVAGSVD 87
A AV+SGA L+AA +V S +
Sbjct 61 AMAVASGAKSLEAAAVVTESAE 82
>gi|297194460|ref|ZP_06911858.1| conserved hypothetical protein [Streptomyces pristinaespiralis
ATCC 25486]
gi|297152274|gb|EDY62638.2| conserved hypothetical protein [Streptomyces pristinaespiralis
ATCC 25486]
Length=117
Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/94 (53%), Positives = 62/94 (66%), Gaps = 2/94 (2%)
Query 6 ITLAEQLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAV 65
+T + L ED K++ LAR+A AR GAAVRD GRTY A VAL +L+L+ LQ AV
Sbjct 1 MTQSSDLGPEDRKIITLARSARARNGVPEGAAVRDGTGRTYVAGTVALDSLKLSALQTAV 60
Query 66 AAAVSSGATGLQAAVLV--AGSVDDPGIAAVREL 97
A AV+SGAT L+AA +V A + D AAVR+L
Sbjct 61 AMAVASGATTLEAAAVVSDAEAASDEDRAAVRDL 94
>gi|294629271|ref|ZP_06707831.1| cytidine deaminase [Streptomyces sp. e14]
gi|292832604|gb|EFF90953.1| cytidine deaminase [Streptomyces sp. e14]
Length=117
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/94 (52%), Positives = 63/94 (68%), Gaps = 2/94 (2%)
Query 6 ITLAEQLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAV 65
+T + LD ED K+V LAR+ AR GAAVRD GRTYAA V L++L+L+ L+ AV
Sbjct 1 MTDSNGLDPEDRKIVTLARSVRARNGVPEGAAVRDETGRTYAAGSVDLASLQLSALRTAV 60
Query 66 AAAVSSGATGLQAAVLV--AGSVDDPGIAAVREL 97
A AV+SGAT L+AA +V A + +AAVR+L
Sbjct 61 AMAVASGATSLEAAAVVGEAEGLAPEDLAAVRDL 94
>gi|297160578|gb|ADI10290.1| hypothetical protein SBI_07170 [Streptomyces bingchenggensis
BCW-1]
Length=120
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/88 (54%), Positives = 58/88 (66%), Gaps = 2/88 (2%)
Query 12 LDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVSS 71
LD ED K++ LAR+A AR GAAVRD GRTY A VAL +L L+ L+ AVA AV+S
Sbjct 11 LDPEDRKIITLARSARARNGVPEGAAVRDETGRTYVAGTVALPSLPLSALRTAVAMAVAS 70
Query 72 GATGLQAAVLVAGSVDDP--GIAAVREL 97
GA L+AA +V + D P AAVR+L
Sbjct 71 GAKSLEAAAVVTEAEDLPEEDRAAVRDL 98
>gi|329934649|ref|ZP_08284690.1| hypothetical protein SGM_0402 [Streptomyces griseoaurantiacus
M045]
gi|329305471|gb|EGG49327.1| hypothetical protein SGM_0402 [Streptomyces griseoaurantiacus
M045]
Length=117
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/96 (52%), Positives = 63/96 (66%), Gaps = 6/96 (6%)
Query 6 ITLAEQLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAV 65
+T + LDAED K+V LAR+A AR GAAVRD GRTY A V L +L L+ L+ AV
Sbjct 1 MTDSNALDAEDRKIVTLARSARARNGVPEGAAVRDETGRTYVAGSVELPSLRLSALRTAV 60
Query 66 AAAVSSGATGLQAAVLVAG----SVDDPGIAAVREL 97
A AV+SGA L+AA +V+ S +D +AAVR+L
Sbjct 61 AMAVASGAKSLEAAAVVSEAEGLSAED--LAAVRDL 94
>gi|239987516|ref|ZP_04708180.1| hypothetical protein SrosN1_09444 [Streptomyces roseosporus NRRL
11379]
gi|291444477|ref|ZP_06583867.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291347424|gb|EFE74328.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length=120
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/65 (64%), Positives = 47/65 (73%), Gaps = 0/65 (0%)
Query 12 LDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVSS 71
LDAED K+V LAR+A AR GAAVRD GRTY A VAL +L+L+ LQ AVA AV+S
Sbjct 10 LDAEDRKIVTLARSARARNGVPEGAAVRDETGRTYVAGTVALESLKLSALQTAVAMAVAS 69
Query 72 GATGL 76
GAT L
Sbjct 70 GATSL 74
>gi|159039360|ref|YP_001538613.1| hypothetical protein Sare_3829 [Salinispora arenicola CNS-205]
gi|157918195|gb|ABV99622.1| conserved hypothetical protein [Salinispora arenicola CNS-205]
Length=125
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/97 (60%), Positives = 69/97 (72%), Gaps = 2/97 (2%)
Query 11 QLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVS 70
+L AEDAKLVVLAR A R A GAAVRD DGRTYAAA V+L +L LT LQ AVA+A +
Sbjct 16 ELTAEDAKLVVLARGARGRVGAVEGAAVRDQDGRTYAAASVSLPSLTLTALQLAVASAAA 75
Query 71 SGATGLQAAVLV--AGSVDDPGIAAVRELAPTAAIIV 105
+GAT L+AA +V A ++D G AVR+LA A I V
Sbjct 76 AGATRLEAAAVVTEASTLDGAGHMAVRDLAADAPIHV 112
>gi|256375390|ref|YP_003099050.1| cytidine deaminase [Actinosynnema mirum DSM 43827]
gi|255919693|gb|ACU35204.1| cytidine deaminase [Actinosynnema mirum DSM 43827]
Length=110
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/102 (57%), Positives = 72/102 (71%), Gaps = 2/102 (1%)
Query 11 QLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVS 70
+L ED K+V LAR+A AR A GAAVRD DGRTYAA VAL +L LT LQAAVAAAV+
Sbjct 3 ELGPEDLKIVTLARSARARTGAAEGAAVRDTDGRTYAATTVALPSLALTALQAAVAAAVA 62
Query 71 SGATGLQAAVLVAG--SVDDPGIAAVRELAPTAAIIVTDRAG 110
SGA GL+AA +V G ++D +AAVR+L +A + D +G
Sbjct 63 SGAEGLEAAAVVTGADALDAASVAAVRDLGASAPVFRADGSG 104
>gi|291451236|ref|ZP_06590626.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291354185|gb|EFE81087.1| conserved hypothetical protein [Streptomyces albus J1074]
Length=121
Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/77 (52%), Positives = 52/77 (68%), Gaps = 0/77 (0%)
Query 6 ITLAEQLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAV 65
+T + +L ED K+V LAR+A AR GAAVRD GRTY A V L +L+L+ L+ AV
Sbjct 5 MTESTELHPEDRKIVTLARSARARNGVPEGAAVRDETGRTYVAGTVTLDSLQLSALRTAV 64
Query 66 AAAVSSGATGLQAAVLV 82
A AV+SGA L+AA +V
Sbjct 65 AMAVASGARSLEAAAVV 81
>gi|302534332|ref|ZP_07286674.1| conserved hypothetical protein [Streptomyces sp. C]
gi|302443227|gb|EFL15043.1| conserved hypothetical protein [Streptomyces sp. C]
Length=125
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/71 (53%), Positives = 48/71 (68%), Gaps = 0/71 (0%)
Query 7 TLAEQLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVA 66
T+ +D ED+K++ LAR+A AR GAAVRD GRTY A V L +L+L+ LQ AVA
Sbjct 9 TVGNGIDPEDSKIITLARSARARNGVPEGAAVRDETGRTYVAGTVELDSLKLSALQTAVA 68
Query 67 AAVSSGATGLQ 77
AV+SGA L+
Sbjct 69 MAVASGANSLE 79
>gi|330469593|ref|YP_004407336.1| hypothetical protein VAB18032_28326 [Verrucosispora maris AB-18-032]
gi|328812564|gb|AEB46736.1| hypothetical protein VAB18032_28326 [Verrucosispora maris AB-18-032]
Length=125
Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/97 (56%), Positives = 69/97 (72%), Gaps = 2/97 (2%)
Query 11 QLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVS 70
+L AED KLV+LAR A R A GAAVRD DGRTYAAA V+L +L +T LQ AVA+A +
Sbjct 16 ELSAEDGKLVILARGARGRVGAVEGAAVRDQDGRTYAAASVSLPSLTITALQLAVASAAA 75
Query 71 SGATGLQAAVLV--AGSVDDPGIAAVRELAPTAAIIV 105
+GAT L+AA +V A ++D G AAVR+L+ A + V
Sbjct 76 AGATRLEAAAVVTEASTLDGAGYAAVRDLSADAPVHV 112
>gi|328882364|emb|CCA55603.1| hypothetical protein SVEN_2317 [Streptomyces venezuelae ATCC
10712]
Length=120
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/89 (51%), Positives = 58/89 (66%), Gaps = 2/89 (2%)
Query 11 QLDAEDAKLVVLARAAMARAEAGAGAAVRDVDGRTYAAAPVALSALELTGLQAAVAAAVS 70
L AED K++ LAR+A AR GAAVRD GRTY A V L +L+L+ L+ AVA AV+
Sbjct 9 DLGAEDLKIITLARSARARNGVPEGAAVRDETGRTYVAGTVELESLKLSALRTAVAMAVA 68
Query 71 SGATGLQAAVLVAG--SVDDPGIAAVREL 97
SGA L+AA +V+ + D AAVR+L
Sbjct 69 SGAQSLEAAAVVSNAEAASDEDRAAVRDL 97
Lambda K H
0.316 0.127 0.333
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 127560148160
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40