BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2370c
Length=437
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609507|ref|NP_216886.1| hypothetical protein Rv2370c [Mycob... 873 0.0
gi|289758492|ref|ZP_06517870.1| conserved hypothetical protein [... 712 0.0
gi|15840913|ref|NP_335950.1| hypothetical protein MT1500 [Mycoba... 582 4e-164
gi|298524960|ref|ZP_07012369.1| transcriptional activator protei... 582 5e-164
gi|31792647|ref|NP_855140.1| transcriptional activator protein [... 581 8e-164
gi|340626467|ref|YP_004744919.1| putative transcriptional activa... 580 2e-163
gi|57116867|ref|NP_215969.2| transcriptional activator protein [... 578 6e-163
gi|289443891|ref|ZP_06433635.1| conserved hypothetical protein [... 575 6e-162
gi|183982271|ref|YP_001850562.1| transcriptional activator prote... 548 5e-154
gi|289757561|ref|ZP_06516939.1| transcriptional activator protei... 538 5e-151
gi|340626208|ref|YP_004744660.1| hypothetical protein MCAN_12051... 535 6e-150
gi|254364095|ref|ZP_04980141.1| conserved hypothetical protein [... 535 8e-150
gi|15608334|ref|NP_215710.1| hypothetical protein Rv1194c [Mycob... 534 1e-149
gi|289744939|ref|ZP_06504317.1| conserved hypothetical protein [... 531 1e-148
gi|15827510|ref|NP_301773.1| hypothetical protein ML1052 [Mycoba... 514 7e-144
gi|118616706|ref|YP_905038.1| transcriptional regulatory protein... 513 2e-143
gi|183984214|ref|YP_001852505.1| transcriptional regulatory prot... 513 3e-143
gi|699188|gb|AAA62953.1| trx [Mycobacterium leprae] 512 5e-143
gi|289745203|ref|ZP_06504581.1| transcriptional activator protei... 510 1e-142
gi|118618591|ref|YP_906923.1| transcriptional regulator [Mycobac... 505 5e-141
gi|183982113|ref|YP_001850404.1| transcriptional regulator [Myco... 501 9e-140
gi|289570513|ref|ZP_06450740.1| conserved hypothetical protein [... 497 1e-138
gi|240169039|ref|ZP_04747698.1| transcriptional regulatory prote... 494 9e-138
gi|183981147|ref|YP_001849438.1| hypothetical protein MMAR_1127 ... 462 5e-128
gi|240167827|ref|ZP_04746486.1| hypothetical protein MkanA1_0082... 461 9e-128
gi|240172052|ref|ZP_04750711.1| transcriptional regulatory prote... 453 3e-125
gi|118617459|ref|YP_905791.1| transcriptional activator protein ... 447 2e-123
gi|294633995|ref|ZP_06712551.1| regulatory protein [Streptomyces... 410 3e-112
gi|29827930|ref|NP_822564.1| hypothetical protein SAV_1389 [Stre... 365 9e-99
gi|288916819|ref|ZP_06411192.1| putative transcriptional regulat... 357 3e-96
gi|296393206|ref|YP_003658090.1| PucR family transcriptional reg... 346 4e-93
gi|284990852|ref|YP_003409406.1| putative PucR family transcript... 316 5e-84
gi|289705749|ref|ZP_06502133.1| conserved hypothetical protein [... 313 5e-83
gi|296141540|ref|YP_003648783.1| PucR family transcriptional reg... 312 6e-83
gi|78059959|ref|YP_366534.1| putative regulator of polyketide sy... 297 3e-78
gi|26989534|ref|NP_744959.1| hypothetical protein PP_2815 [Pseud... 266 4e-69
gi|254240668|ref|ZP_04933990.1| conserved hypothetical protein [... 263 5e-68
gi|296140575|ref|YP_003647818.1| PucR family transcriptional reg... 259 8e-67
gi|107101671|ref|ZP_01365589.1| hypothetical protein PaerPA_0100... 254 2e-65
gi|313110892|ref|ZP_07796735.1| hypothetical protein PA39016_002... 254 2e-65
gi|218891802|ref|YP_002440669.1| hypothetical protein PLES_30801... 253 4e-65
gi|326381991|ref|ZP_08203684.1| putative transcriptional regulat... 239 1e-60
gi|54023238|ref|YP_117480.1| hypothetical protein nfa12710 [Noca... 236 8e-60
gi|169629742|ref|YP_001703391.1| hypothetical protein MAB_2657c ... 216 6e-54
gi|240170335|ref|ZP_04748994.1| hypothetical protein MkanA1_1356... 213 6e-53
gi|111020760|ref|YP_703732.1| hypothetical protein RHA1_ro03774 ... 202 1e-49
gi|226359516|ref|YP_002777294.1| CdaR family transcriptional reg... 201 2e-49
gi|328886832|emb|CCA60071.1| hypothetical protein SVEN_6785 [Str... 196 7e-48
gi|304319834|ref|YP_003853477.1| hypothetical protein PB2503_012... 186 9e-45
gi|297197571|ref|ZP_06914968.1| conserved hypothetical protein [... 166 6e-39
>gi|15609507|ref|NP_216886.1| hypothetical protein Rv2370c [Mycobacterium tuberculosis H37Rv]
gi|15841882|ref|NP_336919.1| hypothetical protein MT2439 [Mycobacterium tuberculosis CDC1551]
gi|31793547|ref|NP_856040.1| hypothetical protein Mb2391c [Mycobacterium bovis AF2122/97]
74 more sequence titles
Length=437
Score = 873 bits (2256), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/437 (99%), Positives = 437/437 (100%), Gaps = 0/437 (0%)
Query 1 VVLPKPTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSH 60
+VLPKPTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSH
Sbjct 1 MVLPKPTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSH 60
Query 61 LIHFATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAF 120
LIHFATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAF
Sbjct 61 LIHFATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAF 120
Query 121 GLTTDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDG 180
GLTTDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDG
Sbjct 121 GLTTDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDG 180
Query 181 APISRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASA 240
APISRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASA
Sbjct 181 APISRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASA 240
Query 241 ATRWVWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLR 300
ATRWVWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLR
Sbjct 241 ATRWVWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLR 300
Query 301 SQQRLAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAA 360
SQQRLAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAA
Sbjct 301 SQQRLAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAA 360
Query 361 HVLHTHRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQWRGSQTSDPVETPVEGITSP 420
HVLHTHRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQWRGSQTSDPVETPVEGITSP
Sbjct 361 HVLHTHRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQWRGSQTSDPVETPVEGITSP 420
Query 421 PPESLGRRRSRLAQLER 437
PPESLGRRRSRLAQLER
Sbjct 421 PPESLGRRRSRLAQLER 437
>gi|289758492|ref|ZP_06517870.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|289714056|gb|EFD78068.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length=504
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/356 (99%), Positives = 356/356 (100%), Gaps = 0/356 (0%)
Query 1 VVLPKPTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSH 60
+VLPKPTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSH
Sbjct 1 MVLPKPTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSH 60
Query 61 LIHFATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAF 120
LIHFATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAF
Sbjct 61 LIHFATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAF 120
Query 121 GLTTDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDG 180
GLTTDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDG
Sbjct 121 GLTTDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDG 180
Query 181 APISRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASA 240
APISRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASA
Sbjct 181 APISRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASA 240
Query 241 ATRWVWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLR 300
ATRWVWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLR
Sbjct 241 ATRWVWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLR 300
Query 301 SQQRLAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNA 356
SQQRLAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNA
Sbjct 301 SQQRLAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNA 356
>gi|15840913|ref|NP_335950.1| hypothetical protein MT1500 [Mycobacterium tuberculosis CDC1551]
gi|148822672|ref|YP_001287426.1| transcriptional activator protein [Mycobacterium tuberculosis
F11]
gi|253799498|ref|YP_003032499.1| transcriptional activator [Mycobacterium tuberculosis KZN 1435]
13 more sequence titles
Length=432
Score = 582 bits (1500), Expect = 4e-164, Method: Compositional matrix adjust.
Identities = 286/409 (70%), Positives = 334/409 (82%), Gaps = 0/409 (0%)
Query 1 VVLPKPTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSH 60
V L + +PR ELIR+AA++AL+PT EWLDE DRA LAA+PSIAADPALATVV R+NR+H
Sbjct 12 VALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH 71
Query 61 LIHFATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAF 120
LIHFA ANLR PG PVPANLGP+PLRMARDLVR GLDA ALD+YR+GQNVAW+RWT+IAF
Sbjct 72 LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF 131
Query 121 GLTTDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDG 180
GLT+DP ELHELL +PFR+A+EF+D TLAG+ +MQLE D+LTRDV AE R+IV+L++DG
Sbjct 132 GLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG 191
Query 181 APISRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASA 240
APISR+ AEA+LGYPLDRSHTAA+IW D + +HLD A AFG A GCP PL+ VA A
Sbjct 192 APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA 251
Query 241 ATRWVWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLR 300
ATRWVWV DA D D IH+VL P ARIA+G TA GI+GFRRSHRDAL T RM+ RL
Sbjct 252 ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE 311
Query 301 SQQRLAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAA 360
S R+AFF D+ M+A+LTEN + A DFI TLG+LESASP L TT+LT+IN+QCNASRAA
Sbjct 312 SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA 371
Query 361 HVLHTHRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQWRGSQTSDP 409
+L THRNTL+ RLETAQRLLPRPL T I VAVA+ A QWR QTSDP
Sbjct 372 RLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKQTSDP 420
>gi|298524960|ref|ZP_07012369.1| transcriptional activator protein [Mycobacterium tuberculosis
94_M4241A]
gi|298494754|gb|EFI30048.1| transcriptional activator protein [Mycobacterium tuberculosis
94_M4241A]
gi|339294429|gb|AEJ46540.1| transcriptional activator protein [Mycobacterium tuberculosis
CCDC5079]
gi|339298067|gb|AEJ50177.1| transcriptional activator protein [Mycobacterium tuberculosis
CCDC5180]
Length=432
Score = 582 bits (1499), Expect = 5e-164, Method: Compositional matrix adjust.
Identities = 286/409 (70%), Positives = 334/409 (82%), Gaps = 0/409 (0%)
Query 1 VVLPKPTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSH 60
V L + +PR ELIR+AA++AL+PT EWLDE DRA LAA+PSIAADPALATVV R+NR+H
Sbjct 12 VALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH 71
Query 61 LIHFATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAF 120
LIHFA ANLR PG PVPANLGP+PLRMARDLVR GLDA ALD+YR+GQNVAW+RWT+IAF
Sbjct 72 LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF 131
Query 121 GLTTDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDG 180
GLT+DP ELHELL +PFR+A+EF+D TLAG+ +MQLE D+LTRDV AE R+IV+L++DG
Sbjct 132 GLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG 191
Query 181 APISRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASA 240
APISR+ AEA+LGYPLDRSHTAA+IW D + +HLD A AFG A GCP PL+ VA A
Sbjct 192 APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA 251
Query 241 ATRWVWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLR 300
ATRWVWV DA D D IH+VL P ARIA+G TA GI+GFRRSHRDAL T RM+ RL
Sbjct 252 ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE 311
Query 301 SQQRLAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAA 360
S R+AFF D+ M+A+LTEN + A DFI TLG+LESASP L TT+LT+IN+QCNASRAA
Sbjct 312 SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA 371
Query 361 HVLHTHRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQWRGSQTSDP 409
+L THRNTL+ RLETAQRLLPRPL T I VAVA+ A QWR QTSDP
Sbjct 372 RLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKQTSDP 420
>gi|31792647|ref|NP_855140.1| transcriptional activator protein [Mycobacterium bovis AF2122/97]
gi|121637383|ref|YP_977606.1| putative transcriptional activator protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|224989858|ref|YP_002644545.1| putative transcriptional activator protein [Mycobacterium bovis
BCG str. Tokyo 172]
39 more sequence titles
Length=421
Score = 581 bits (1498), Expect = 8e-164, Method: Compositional matrix adjust.
Identities = 285/409 (70%), Positives = 334/409 (82%), Gaps = 0/409 (0%)
Query 1 VVLPKPTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSH 60
+ L + +PR ELIR+AA++AL+PT EWLDE DRA LAA+PSIAADPALATVV R+NR+H
Sbjct 1 MALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH 60
Query 61 LIHFATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAF 120
LIHFA ANLR PG PVPANLGP+PLRMARDLVR GLDA ALD+YR+GQNVAW+RWT+IAF
Sbjct 61 LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF 120
Query 121 GLTTDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDG 180
GLT+DP ELHELL +PFR+A+EF+D TLAG+ +MQLE D+LTRDV AE R+IV+L++DG
Sbjct 121 GLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG 180
Query 181 APISRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASA 240
APISR+ AEA+LGYPLDRSHTAA+IW D + +HLD A AFG A GCP PL+ VA A
Sbjct 181 APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA 240
Query 241 ATRWVWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLR 300
ATRWVWV DA D D IH+VL P ARIA+G TA GI+GFRRSHRDAL T RM+ RL
Sbjct 241 ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE 300
Query 301 SQQRLAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAA 360
S R+AFF D+ M+A+LTEN + A DFI TLG+LESASP L TT+LT+IN+QCNASRAA
Sbjct 301 SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA 360
Query 361 HVLHTHRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQWRGSQTSDP 409
+L THRNTL+ RLETAQRLLPRPL T I VAVA+ A QWR QTSDP
Sbjct 361 RLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKQTSDP 409
>gi|340626467|ref|YP_004744919.1| putative transcriptional activator protein [Mycobacterium canettii
CIPT 140010059]
gi|340004657|emb|CCC43801.1| putative transcriptional activator protein [Mycobacterium canettii
CIPT 140010059]
Length=421
Score = 580 bits (1495), Expect = 2e-163, Method: Compositional matrix adjust.
Identities = 284/409 (70%), Positives = 334/409 (82%), Gaps = 0/409 (0%)
Query 1 VVLPKPTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSH 60
+ L + +PR ELIR+AA++AL+PT EWLDE DRA LAA+PSIAADPALATVV R+NR+H
Sbjct 1 MALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH 60
Query 61 LIHFATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAF 120
LIHFA ANLR PG PVPANLGP+PLRMARDLVR GLDA ALD+YR+GQNVAW+RWT+IAF
Sbjct 61 LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF 120
Query 121 GLTTDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDG 180
GLT++P ELHELL +PFR+A+EF+D TLAG+ +MQLE D+LTRDV AE R+IV+L++DG
Sbjct 121 GLTSNPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG 180
Query 181 APISRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASA 240
APISR+ AEA+LGYPLDRSHTAA+IW D + +HLD A AFG A GCP PL+ VA A
Sbjct 181 APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA 240
Query 241 ATRWVWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLR 300
ATRWVWV DA D D IH+VL P ARIA+G TA GI+GFRRSHRDAL T RM+ RL
Sbjct 241 ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE 300
Query 301 SQQRLAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAA 360
S R+AFF D+ M+A+LTEN + A DFI TLG+LESASP L TT+LT+IN+QCNASRAA
Sbjct 301 SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA 360
Query 361 HVLHTHRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQWRGSQTSDP 409
+L THRNTL+ RLETAQRLLPRPL T I VAVA+ A QWR QTSDP
Sbjct 361 RLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKQTSDP 409
>gi|57116867|ref|NP_215969.2| transcriptional activator protein [Mycobacterium tuberculosis
H37Rv]
gi|148661245|ref|YP_001282768.1| hypothetical protein MRA_1462 [Mycobacterium tuberculosis H37Ra]
gi|308231843|ref|ZP_07413977.2| transcriptional activator [Mycobacterium tuberculosis SUMu001]
9 more sequence titles
Length=421
Score = 578 bits (1490), Expect = 6e-163, Method: Compositional matrix adjust.
Identities = 284/409 (70%), Positives = 333/409 (82%), Gaps = 0/409 (0%)
Query 1 VVLPKPTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSH 60
+ L + +PR ELIR+AA++AL+PT EWLDE DRA LAA+PSIAADPALATVV R+NR+H
Sbjct 1 MALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH 60
Query 61 LIHFATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAF 120
LIHFA ANLR PG PVPANLGP+PLRMARDLVR GLDA ALD+YR+GQNVAW+RWT+IAF
Sbjct 61 LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF 120
Query 121 GLTTDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDG 180
GLT+DP ELHELL +PFR+A+EF+D TLAG+ +MQLE D+LTRDV AE R+IV+L++DG
Sbjct 121 GLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG 180
Query 181 APISRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASA 240
APISR+ AEA+LGYPLDRSHTAA+IW D + +HLD A AFG A GCP PL+ VA A
Sbjct 181 APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA 240
Query 241 ATRWVWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLR 300
ATRWVWV DA D D IH+VL P ARIA+G TA GI+GFRRSHRDAL T RM+ RL
Sbjct 241 ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE 300
Query 301 SQQRLAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAA 360
S R+AFF D+ M+A+LTEN + A DFI TLG+LESASP L TT+LT+IN+QCNASRAA
Sbjct 301 SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA 360
Query 361 HVLHTHRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQWRGSQTSDP 409
+L THRNTL+ RLETAQRLLPRPL T I VAVA+ A QWR TSDP
Sbjct 361 RLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKPTSDP 409
>gi|289443891|ref|ZP_06433635.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289416810|gb|EFD14050.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
Length=311
Score = 575 bits (1482), Expect = 6e-162, Method: Compositional matrix adjust.
Identities = 285/286 (99%), Positives = 286/286 (100%), Gaps = 0/286 (0%)
Query 1 VVLPKPTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSH 60
+VLPKPTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSH
Sbjct 1 MVLPKPTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSH 60
Query 61 LIHFATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAF 120
LIHFATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAF
Sbjct 61 LIHFATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAF 120
Query 121 GLTTDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDG 180
GLTTDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDG
Sbjct 121 GLTTDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDG 180
Query 181 APISRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASA 240
APISRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASA
Sbjct 181 APISRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASA 240
Query 241 ATRWVWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSH 286
ATRWVWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSH
Sbjct 241 ATRWVWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSH 286
>gi|183982271|ref|YP_001850562.1| transcriptional activator protein [Mycobacterium marinum M]
gi|183175597|gb|ACC40707.1| transcriptional activator protein [Mycobacterium marinum M]
Length=427
Score = 548 bits (1413), Expect = 5e-154, Method: Compositional matrix adjust.
Identities = 272/421 (65%), Positives = 327/421 (78%), Gaps = 7/421 (1%)
Query 7 TPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSHLIHFAT 66
+PR R+LIR+AA+VAL+P+ +WL+E DRATLAA P IA +P LATV+SRANR++L HFA
Sbjct 7 SPRVRDLIREAARVALNPSQQWLEEFDRATLAAAPPIAENPDLATVISRANRANLRHFAA 66
Query 67 ANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFGLTTDP 126
+NLR PG PVPANLG +PLRMARDLVR GLD ALDVYRVGQNVAWQRWT+I FGLTTDP
Sbjct 67 SNLRNPGDPVPANLGAEPLRMARDLVRLGLDTLALDVYRVGQNVAWQRWTDIVFGLTTDP 126
Query 127 QELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGAPISRQ 186
QEL ELL +PFRSA+ FID TLAG+AAQM+LE+ EL+R++ AE RRIVEL+L+GAPISR
Sbjct 127 QELRELLDVPFRSAAAFIDTTLAGIAAQMELEHHELSRNICAERRRIVELLLNGAPISRD 186
Query 187 SAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATRWVW 246
SAE++LGYPLDRSHTAAIIW D D + LD AF A+GC L +++A TRWVW
Sbjct 187 SAESRLGYPLDRSHTAAIIWSDRSDGDHRDLDRAVDAFCNAVGCASSLAIMSAATTRWVW 246
Query 247 VSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQRLA 306
V D D RI QV+ PH RIA+GTT G+DGFRRSHRDAL RML RLRS Q++A
Sbjct 247 VRDVDVFDCSRIRQVMRELPHVRIAIGTTEPGVDGFRRSHRDALTAARMLIRLRSPQQVA 306
Query 307 FFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAHVLHTH 366
FF D+ MIA+LTENPD A +FI +TLGD E ASP L T+LT+I++QCNASRAA +L+TH
Sbjct 307 FFGDVEMIALLTENPDGADEFIKNTLGDFEEASPALQHTLLTFISQQCNASRAARLLYTH 366
Query 367 RNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQWRGSQTSDPVETPVEGITSP----PP 422
RNTL+ RLETAQRLLP+PL+ T ++VAVA+ LQWR Q +P + G P PP
Sbjct 367 RNTLMHRLETAQRLLPKPLEDTTVRVAVALEVLQWRSKQPGNPAAS---GAGKPDDRTPP 423
Query 423 E 423
E
Sbjct 424 E 424
>gi|289757561|ref|ZP_06516939.1| transcriptional activator protein [Mycobacterium tuberculosis
T85]
gi|289713125|gb|EFD77137.1| transcriptional activator protein [Mycobacterium tuberculosis
T85]
Length=385
Score = 538 bits (1387), Expect = 5e-151, Method: Compositional matrix adjust.
Identities = 263/373 (71%), Positives = 306/373 (83%), Gaps = 0/373 (0%)
Query 37 LAAHPSIAADPALATVVSRANRSHLIHFATANLRKPGQPVPANLGPDPLRMARDLVRRGL 96
+AA+PSIAADPALATVV R+NR+HLIHFA ANLR PG PVPANLGP+PLRMARDLVR GL
Sbjct 1 MAANPSIAADPALATVVKRSNRAHLIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGL 60
Query 97 DASALDVYRVGQNVAWQRWTEIAFGLTTDPQELHELLTLPFRSASEFIDATLAGLAAQMQ 156
DA ALD+YR+GQNVAW+RWT+IAFGLT+DP ELHELL +PFR+A+EF+D TLAG+ +MQ
Sbjct 61 DALALDIYRIGQNVAWRRWTDIAFGLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQ 120
Query 157 LEYDELTRDVHAEHRRIVELILDGAPISRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNH 216
LE D+LTRDV AE R+IV+L++DGAPISR+ AEA+LGYPLDRSHTAA+IW D + +H
Sbjct 121 LERDKLTRDVPAERRKIVQLLIDGAPISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSH 180
Query 217 LDHTARAFGRALGCPQPLIAVASAATRWVWVSDAATLDTDRIHQVLDHAPHARIAVGTTA 276
LD A AFG A GCP PL+ VA AATRWVWV DA D D IH+VL P ARIA+G TA
Sbjct 181 LDRVADAFGHAGGCPHPLVVVAGAATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATA 240
Query 277 RGIDGFRRSHRDALATQRMLARLRSQQRLAFFADIHMIAVLTENPDSAADFITSTLGDLE 336
GI+GFRRSHRDAL T RM+ RL S R+AFF D+ M+A+LTEN + A DFI TLG+LE
Sbjct 241 PGIEGFRRSHRDALTTARMIIRLESPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLE 300
Query 337 SASPQLLTTVLTYINEQCNASRAAHVLHTHRNTLLRRLETAQRLLPRPLDHTIIQVAVAI 396
SASP L TT+LT+IN+QCNASRAA +L THRNTL+ RLETAQRLLPRPL T I VAVA+
Sbjct 301 SASPALKTTLLTFINQQCNASRAARLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVAL 360
Query 397 SALQWRGSQTSDP 409
A QWR QTSDP
Sbjct 361 EAQQWREKQTSDP 373
>gi|340626208|ref|YP_004744660.1| hypothetical protein MCAN_12051 [Mycobacterium canettii CIPT
140010059]
gi|340004398|emb|CCC43541.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=421
Score = 535 bits (1378), Expect = 6e-150, Method: Compositional matrix adjust.
Identities = 257/401 (65%), Positives = 326/401 (82%), Gaps = 0/401 (0%)
Query 5 KPTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSHLIHF 64
+P+PR RELIR+ A++AL+P+PEW++ELDRAT+AA+P+IA DP LA VV ANR++L+++
Sbjct 5 QPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRANLVYW 64
Query 65 ATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFGLTT 124
A ANLR PG VPANLG +PLRMARDLVRRGLD A ++YR G+++ W+ W IAF LT+
Sbjct 65 AAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAFELTS 124
Query 125 DPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGAPIS 184
DPQEL ELL + RS ++FI+ATL G+AAQ+Q E+DELTR HAE +V LILDGAPIS
Sbjct 125 DPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDGAPIS 184
Query 185 RQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATRW 244
+ AEAKLGYPL+R+HTAAIIW D+ D + ++LD A F A+G +PL VA AA+RW
Sbjct 185 PERAEAKLGYPLNRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGAASRW 244
Query 245 VWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQR 304
WV+DA LD D + +D+AP ARIA+GTTA G++GFRRSH +AL TQR L+RLRS QR
Sbjct 245 AWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLRSTQR 304
Query 305 LAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAHVLH 364
+AFFAD+ M+A++++NPD+A++FITSTLGDLESASP L T +LT+INEQCNASRAA LH
Sbjct 305 VAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAAKRLH 364
Query 365 THRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQWRGSQ 405
THRNT LRRLE+AQRLLPRPLDHT + VAVA+ ALQWRG++
Sbjct 365 THRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNK 405
>gi|254364095|ref|ZP_04980141.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|134149609|gb|EBA41654.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
Length=421
Score = 535 bits (1377), Expect = 8e-150, Method: Compositional matrix adjust.
Identities = 257/401 (65%), Positives = 325/401 (82%), Gaps = 0/401 (0%)
Query 5 KPTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSHLIHF 64
+P+PR RELIR+ A++AL+P+PEW++ELDRAT+AA+P+IA DP LA VV ANR++L+++
Sbjct 5 QPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRANLVYW 64
Query 65 ATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFGLTT 124
A ANLR PG VPANLG +PLRMARDLVRRGLD A ++YR G+++ W+ W IAF LT+
Sbjct 65 AAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRLWMGIAFELTS 124
Query 125 DPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGAPIS 184
DPQEL ELL + RS ++FI+ATL G+AAQ+Q E+DELTR HAE +V LILDGAPIS
Sbjct 125 DPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDGAPIS 184
Query 185 RQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATRW 244
+ AEAKLGYPL R+HTAAIIW D+ D + ++LD A F A+G +PL VA AA+RW
Sbjct 185 PERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGAASRW 244
Query 245 VWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQR 304
WV+DA LD D + +D+AP ARIA+GTTA G++GFRRSH +AL TQR L+RLRS QR
Sbjct 245 AWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLRSTQR 304
Query 305 LAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAHVLH 364
+AFFAD+ M+A++++NPD+A++FITSTLGDLESASP L T +LT+INEQCNASRAA LH
Sbjct 305 VAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAAKRLH 364
Query 365 THRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQWRGSQ 405
THRNT LRRLE+AQRLLPRPLDHT + VAVA+ ALQWRG++
Sbjct 365 THRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNK 405
>gi|15608334|ref|NP_215710.1| hypothetical protein Rv1194c [Mycobacterium tuberculosis H37Rv]
gi|15840637|ref|NP_335674.1| hypothetical protein MT1231 [Mycobacterium tuberculosis CDC1551]
gi|31792387|ref|NP_854880.1| hypothetical protein Mb1226c [Mycobacterium bovis AF2122/97]
72 more sequence titles
Length=421
Score = 534 bits (1376), Expect = 1e-149, Method: Compositional matrix adjust.
Identities = 257/401 (65%), Positives = 325/401 (82%), Gaps = 0/401 (0%)
Query 5 KPTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSHLIHF 64
+P+PR RELIR+ A++AL+P+PEW++ELDRAT+AA+P+IA DP LA VV ANR++L+++
Sbjct 5 QPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRANLVYW 64
Query 65 ATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFGLTT 124
A ANLR PG VPANLG +PLRMARDLVRRGLD A ++YR G+++ W+ W IAF LT+
Sbjct 65 AAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAFELTS 124
Query 125 DPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGAPIS 184
DPQEL ELL + RS ++FI+ATL G+AAQ+Q E+DELTR HAE +V LILDGAPIS
Sbjct 125 DPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDGAPIS 184
Query 185 RQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATRW 244
+ AEAKLGYPL R+HTAAIIW D+ D + ++LD A F A+G +PL VA AA+RW
Sbjct 185 PERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGAASRW 244
Query 245 VWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQR 304
WV+DA LD D + +D+AP ARIA+GTTA G++GFRRSH +AL TQR L+RLRS QR
Sbjct 245 AWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLRSTQR 304
Query 305 LAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAHVLH 364
+AFFAD+ M+A++++NPD+A++FITSTLGDLESASP L T +LT+INEQCNASRAA LH
Sbjct 305 VAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAAKRLH 364
Query 365 THRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQWRGSQ 405
THRNT LRRLE+AQRLLPRPLDHT + VAVA+ ALQWRG++
Sbjct 365 THRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNK 405
>gi|289744939|ref|ZP_06504317.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289685467|gb|EFD52955.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=421
Score = 531 bits (1367), Expect = 1e-148, Method: Compositional matrix adjust.
Identities = 256/401 (64%), Positives = 324/401 (81%), Gaps = 0/401 (0%)
Query 5 KPTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSHLIHF 64
+P+PR RELIR+ A++AL+P+PEW++ELDRAT+AA+P+IA DP LA VV ANR++L+++
Sbjct 5 QPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRANLVYW 64
Query 65 ATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFGLTT 124
A ANLR PG VPANLG +PLRMARDLVRRGLD A ++YR G+++ W+ W IAF LT+
Sbjct 65 AAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAFELTS 124
Query 125 DPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGAPIS 184
DPQEL ELL + RS ++FI+ATL G+AAQ+Q E+DELTR HAE +V LILDGAPIS
Sbjct 125 DPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDGAPIS 184
Query 185 RQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATRW 244
+ AEAKLGYPL R+HTAAIIW D+ D + ++LD A F A+G +PL VA AA+RW
Sbjct 185 PERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGAASRW 244
Query 245 VWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQR 304
WV+DA LD D + +D+AP ARIA+GTTA G++GFRRSH +AL TQR L+RLRS QR
Sbjct 245 AWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLRSTQR 304
Query 305 LAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAHVLH 364
+A FAD+ M+A++++NPD+A++FITSTLGDLESASP L T +LT+INEQCNASRAA LH
Sbjct 305 VASFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAAKRLH 364
Query 365 THRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQWRGSQ 405
THRNT LRRLE+AQRLLPRPLDHT + VAVA+ ALQWRG++
Sbjct 365 THRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNK 405
>gi|15827510|ref|NP_301773.1| hypothetical protein ML1052 [Mycobacterium leprae TN]
gi|221229987|ref|YP_002503403.1| hypothetical protein MLBr_01052 [Mycobacterium leprae Br4923]
gi|13093060|emb|CAC31433.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219933094|emb|CAR71147.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=421
Score = 514 bits (1325), Expect = 7e-144, Method: Compositional matrix adjust.
Identities = 246/402 (62%), Positives = 317/402 (79%), Gaps = 0/402 (0%)
Query 6 PTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSHLIHFA 65
P+PR RELIR+ A++AL+PT EW+D+LDRAT AA+P+IA DP LA VV RA+R+HL+H+A
Sbjct 6 PSPRVRELIREGARIALNPTQEWIDQLDRATFAANPAIANDPVLAKVVRRASRAHLVHWA 65
Query 66 TANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFGLTTD 125
TANLR PG PVPA+LGP+PL MARDLVRRG D ALD+YRVGQ AW+RW EIAF LT+D
Sbjct 66 TANLRDPGAPVPAHLGPEPLTMARDLVRRGRDVLALDIYRVGQYTAWRRWMEIAFTLTSD 125
Query 126 PQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGAPISR 185
PQEL E+L + +S +E++ ATL +A MQLE DELTR HAE +V+LIL+GAP+++
Sbjct 126 PQELREILNVSAQSINEYVAATLEAIATHMQLERDELTRSTHAERLEVVDLILEGAPVTQ 185
Query 186 QSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATRWV 245
+ AEA+LGY L +HTAA+IW DD D + +LD A AF + Q LI VASAATRWV
Sbjct 186 ERAEARLGYRLGLTHTAAVIWSDDLDGDHGYLDQAAEAFSHVVESTQQLIVVASAATRWV 245
Query 246 WVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQRL 305
W++DA LD + + L + AR+A+GT++ GI+GFRRSH +AL QR LARL+S Q++
Sbjct 246 WLADALALDVPEVQKALLNLSKARVAIGTSSAGIEGFRRSHLEALTAQRTLARLKSHQQV 305
Query 306 AFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAHVLHT 365
AFFAD+ +++++T+NP+ A +FITSTLGD ESASP L T+LT+INEQCNASRAA L T
Sbjct 306 AFFADVQLVSLITQNPEDAKEFITSTLGDFESASPALQQTLLTFINEQCNASRAAKRLFT 365
Query 366 HRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQWRGSQTS 407
HRNTLLRR+E+A++LLPRPLDHT + +AVA+ ALQWRG QT+
Sbjct 366 HRNTLLRRIESAEKLLPRPLDHTSVHIAVALEALQWRGDQTN 407
>gi|118616706|ref|YP_905038.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
gi|118568816|gb|ABL03567.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
Length=421
Score = 513 bits (1322), Expect = 2e-143, Method: Compositional matrix adjust.
Identities = 249/403 (62%), Positives = 320/403 (80%), Gaps = 0/403 (0%)
Query 5 KPTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSHLIHF 64
+P+ R RELIR+ A+ AL+ PEW++ELDR T++A+P+IA DP LA VV R NR++L+H+
Sbjct 5 RPSSRIRELIREGARRALNAGPEWIEELDRETVSANPTIANDPVLAKVVKRVNRANLVHW 64
Query 65 ATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFGLTT 124
A AN+R PG PVPANLG +PLRMARDLVRRGL+A LD+YR+GQ +AW+ W IAF LT+
Sbjct 65 AAANVRHPGAPVPANLGGEPLRMARDLVRRGLEALTLDIYRIGQYIAWRLWINIAFDLTS 124
Query 125 DPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGAPIS 184
DPQELHELL + +S +EFI+ATLAG+AAQ+QLE+DELTR HA+ +V +L+GAPIS
Sbjct 125 DPQELHELLDVSAKSVNEFIEATLAGIAAQVQLEHDELTRGNHADRLEVVGHLLEGAPIS 184
Query 185 RQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATRW 244
R+ AE +LGY L R+HTAAIIW DD D + ++LD A AF A+G Q L VA+AATRW
Sbjct 185 RERAETRLGYSLIRAHTAAIIWSDDFDGDHSNLDRAADAFCHAVGSSQDLTVVANAATRW 244
Query 245 VWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQR 304
VW+++A LD D I Q +D+A ARIA+GT A GI+GFRRSH +AL TQR LARL+S QR
Sbjct 245 VWLAEATNLDIDTIEQAVDNASDARIAIGTKASGIEGFRRSHLEALTTQRTLARLKSDQR 304
Query 305 LAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAHVLH 364
+AFF+D+ ++A++T+N +A +FITSTLG+LESA+P+L T+L +INEQCNASRAA L+
Sbjct 305 VAFFSDVQIVALITQNTQAANEFITSTLGELESAAPELQATLLMFINEQCNASRAAKRLY 364
Query 365 THRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQWRGSQTS 407
THRNTLLRR+E AQRLLPRPL HT + VAVA+ ALQWRG +
Sbjct 365 THRNTLLRRIEAAQRLLPRPLAHTSVHVAVALEALQWRGDNIA 407
>gi|183984214|ref|YP_001852505.1| transcriptional regulatory protein [Mycobacterium marinum M]
gi|183177540|gb|ACC42650.1| transcriptional regulatory protein [Mycobacterium marinum M]
Length=421
Score = 513 bits (1320), Expect = 3e-143, Method: Compositional matrix adjust.
Identities = 249/403 (62%), Positives = 320/403 (80%), Gaps = 0/403 (0%)
Query 5 KPTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSHLIHF 64
+P+ R RELIR+ A+ AL+ PEW++ELDR T++A+P+IA DP LA VV RANR++L+H+
Sbjct 5 RPSSRIRELIREGARRALNAGPEWIEELDRETVSANPTIANDPVLAKVVKRANRANLVHW 64
Query 65 ATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFGLTT 124
A AN+R PG PVPANLG +PLRMARDLVRRGL+ LD+YR+GQ +AW+ W IAF LT+
Sbjct 65 AAANVRHPGAPVPANLGGEPLRMARDLVRRGLETLTLDIYRIGQYIAWRLWINIAFDLTS 124
Query 125 DPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGAPIS 184
DPQEL ELL + +S +EFI+ATLAG+AAQ+QLE+DELTR HA+ +V +L+GAPIS
Sbjct 125 DPQELRELLDVSAKSVNEFIEATLAGIAAQVQLEHDELTRGNHADRLEVVGHLLEGAPIS 184
Query 185 RQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATRW 244
R+ AE +LGY L R+HTAAIIW DD D + ++LD A AF A+G Q L VA+AATRW
Sbjct 185 RERAETRLGYSLIRAHTAAIIWSDDFDGDHSNLDRAADAFCHAVGSSQDLTVVANAATRW 244
Query 245 VWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQR 304
VW+++A LD D I Q +D+A ARIA+GT A GI+GFRRSH +AL TQR LARL+S QR
Sbjct 245 VWLAEATNLDIDTIEQAVDNASDARIAIGTKASGIEGFRRSHLEALTTQRTLARLKSDQR 304
Query 305 LAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAHVLH 364
+AFF+D+ ++A++T+NP +A +FITSTLG+LESA+P+L T+L +INEQCNASRAA L+
Sbjct 305 VAFFSDVQIVALITQNPQAADEFITSTLGELESAAPELQATLLMFINEQCNASRAAKRLY 364
Query 365 THRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQWRGSQTS 407
THRNTLLRR+E AQRLLPRPL HT + VAVA+ ALQWRG +
Sbjct 365 THRNTLLRRIEAAQRLLPRPLAHTSVHVAVALEALQWRGDNIA 407
>gi|699188|gb|AAA62953.1| trx [Mycobacterium leprae]
Length=517
Score = 512 bits (1318), Expect = 5e-143, Method: Compositional matrix adjust.
Identities = 246/402 (62%), Positives = 317/402 (79%), Gaps = 0/402 (0%)
Query 6 PTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSHLIHFA 65
P+PR RELIR+ A++AL+PT EW+D+LDRAT AA+P+IA DP LA VV RA+R+HL+H+A
Sbjct 102 PSPRVRELIREGARIALNPTQEWIDQLDRATFAANPAIANDPVLAKVVRRASRAHLVHWA 161
Query 66 TANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFGLTTD 125
TANLR PG PVPA+LGP+PL MARDLVRRG D ALD+YRVGQ AW+RW EIAF LT+D
Sbjct 162 TANLRDPGAPVPAHLGPEPLTMARDLVRRGRDVLALDIYRVGQYTAWRRWMEIAFTLTSD 221
Query 126 PQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGAPISR 185
PQEL E+L + +S +E++ ATL +A MQLE DELTR HAE +V+LIL+GAP+++
Sbjct 222 PQELREILNVSAQSINEYVAATLEAIATHMQLERDELTRSTHAERLEVVDLILEGAPVTQ 281
Query 186 QSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATRWV 245
+ AEA+LGY L +HTAA+IW DD D + +LD A AF + Q LI VASAATRWV
Sbjct 282 ERAEARLGYRLGLTHTAAVIWSDDLDGDHGYLDQAAEAFSHVVESTQQLIVVASAATRWV 341
Query 246 WVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQRL 305
W++DA LD + + L + AR+A+GT++ GI+GFRRSH +AL QR LARL+S Q++
Sbjct 342 WLADALALDVPEVQKALLNLSKARVAIGTSSAGIEGFRRSHLEALTAQRTLARLKSHQQV 401
Query 306 AFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAHVLHT 365
AFFAD+ +++++T+NP+ A +FITSTLGD ESASP L T+LT+INEQCNASRAA L T
Sbjct 402 AFFADVQLVSLITQNPEDAKEFITSTLGDFESASPALQQTLLTFINEQCNASRAAKRLFT 461
Query 366 HRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQWRGSQTS 407
HRNTLLRR+E+A++LLPRPLDHT + +AVA+ ALQWRG QT+
Sbjct 462 HRNTLLRRIESAEKLLPRPLDHTSVHIAVALEALQWRGDQTN 503
>gi|289745203|ref|ZP_06504581.1| transcriptional activator protein [Mycobacterium tuberculosis
02_1987]
gi|289685731|gb|EFD53219.1| transcriptional activator protein [Mycobacterium tuberculosis
02_1987]
Length=388
Score = 510 bits (1314), Expect = 1e-142, Method: Compositional matrix adjust.
Identities = 248/357 (70%), Positives = 289/357 (81%), Gaps = 0/357 (0%)
Query 53 VSRANRSHLIHFATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAW 112
V +NR+HLIHFA ANLR PG PVPANLGP+PLRMARDLVR GLDA ALD+YR+GQNVAW
Sbjct 20 VVCSNRAHLIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAW 79
Query 113 QRWTEIAFGLTTDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRR 172
+RWT+IAFGLT+DP ELHELL +PFR+A+EF+D TLAG+ +MQLE D+LTRDV AE R+
Sbjct 80 RRWTDIAFGLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRK 139
Query 173 IVELILDGAPISRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQ 232
IV+L++DGAPISR+ AEA+LGYPLDRSHTAA+IW D + +HLD A AFG A GCP
Sbjct 140 IVQLLIDGAPISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPH 199
Query 233 PLIAVASAATRWVWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALAT 292
PL+ VA AATRWVWV DA D D IH+VL P ARIA+G TA GI+GFRRSHRDAL T
Sbjct 200 PLVVVAGAATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTT 259
Query 293 QRMLARLRSQQRLAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINE 352
RM+ RL S R+AFF D+ M+A+LTEN + A DFI TLG+LESASP L TT+LT+IN+
Sbjct 260 ARMIIRLESPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQ 319
Query 353 QCNASRAAHVLHTHRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQWRGSQTSDP 409
QCNASRAA +L THRNTL+ RLETAQRLLPRPL T I VAVA+ A QWR QTSDP
Sbjct 320 QCNASRAARLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKQTSDP 376
>gi|118618591|ref|YP_906923.1| transcriptional regulator [Mycobacterium ulcerans Agy99]
gi|118570701|gb|ABL05452.1| transcriptional regulator [Mycobacterium ulcerans Agy99]
Length=417
Score = 505 bits (1301), Expect = 5e-141, Method: Compositional matrix adjust.
Identities = 242/405 (60%), Positives = 314/405 (78%), Gaps = 0/405 (0%)
Query 4 PKPTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSHLIH 63
P +PR RELIR A++AL+PT +WLDELDR TLAA+P+++ DPAL ++SRANR++LIH
Sbjct 7 PSLSPRMRELIRHTARIALNPTQQWLDELDRTTLAANPALSDDPALVEIISRANRANLIH 66
Query 64 FATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFGLT 123
FA A LR PG PVPAN GP+PLRMA++L+ RGL+A A D+YR+ NVAW+RWT+IAFGLT
Sbjct 67 FAVAILRDPGGPVPANFGPEPLRMAQELLNRGLEALAADIYRIAHNVAWERWTDIAFGLT 126
Query 124 TDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGAPI 183
++PQEL +LL + FRS+++FIDAT+AG+ AQ+ LEYD LTR+V A+ R++VE IL GAP+
Sbjct 127 SNPQELRDLLDVAFRSSNDFIDATIAGIPAQLPLEYDALTREVSAQRRKVVEQILGGAPV 186
Query 184 SRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATR 243
+R+ AEA+LGY LDR+HTAAI+W D+PD + LD A AF ALGC PLI V ++ATR
Sbjct 187 NRERAEAQLGYLLDRAHTAAIVWSDEPDGDHGQLDQAADAFCTALGCRAPLIVVTNSATR 246
Query 244 WVWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQ 303
WVWV+DAAT DRI QVL +AP R+ VG T RGI+GFRRSHRDA TQRML RL + Q
Sbjct 247 WVWVNDAATPVGDRIQQVLTYAPTVRLVVGNTRRGIEGFRRSHRDAQTTQRMLTRLGAPQ 306
Query 304 RLAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAHVL 363
R A FAD M+ +LT++ + +FI TLG+ +SASP L +LTYIN+QCNA+R A L
Sbjct 307 RTAHFADTQMVELLTQDLEGVDEFIECTLGEFQSASPVLHAILLTYINQQCNAARTAKAL 366
Query 364 HTHRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQWRGSQTSD 408
+ HRNTL+ RLETA RLLP+P++ I+++AVA+ LQWR + D
Sbjct 367 YIHRNTLVHRLETAHRLLPQPVEANIVRIAVALEVLQWRSDRDDD 411
>gi|183982113|ref|YP_001850404.1| transcriptional regulator [Mycobacterium marinum M]
gi|183175439|gb|ACC40549.1| transcriptional regulator [Mycobacterium marinum M]
Length=405
Score = 501 bits (1290), Expect = 9e-140, Method: Compositional matrix adjust.
Identities = 241/400 (61%), Positives = 311/400 (78%), Gaps = 0/400 (0%)
Query 11 RELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSHLIHFATANLR 70
RELIR A++AL+PT +WLDELDR TLAA+P+++ DPAL ++SRANR++LIHFA A LR
Sbjct 2 RELIRHTARIALNPTQQWLDELDRTTLAANPALSDDPALVEIISRANRANLIHFAVAILR 61
Query 71 KPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFGLTTDPQELH 130
PG PVPAN GP+PLRMA++L+ RGL+A A D+YR+ NVAW+RWT+IAFGLT++PQEL
Sbjct 62 DPGGPVPANFGPEPLRMAQELLNRGLEALAADIYRIAHNVAWERWTDIAFGLTSNPQELR 121
Query 131 ELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGAPISRQSAEA 190
+LL + FRS+++FIDAT+AG+ AQ+ LEYD LTR+V A+ R++VE IL GAP++R+ AEA
Sbjct 122 DLLDVAFRSSNDFIDATIAGIPAQLPLEYDALTREVSAQRRKVVEQILGGAPVNRERAEA 181
Query 191 KLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATRWVWVSDA 250
+LGY LDR+HTAAI+W D+PD + LD A AF ALGC PLI V ++ATRWVWV+DA
Sbjct 182 QLGYLLDRAHTAAIVWSDEPDGDHGQLDQAADAFCTALGCRAPLIVVTNSATRWVWVNDA 241
Query 251 ATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQRLAFFAD 310
AT DRI QVL AP R+AVG T RGI+GFRRSHRDA TQRML RL + QR A FAD
Sbjct 242 ATPVGDRIQQVLTDAPTVRLAVGNTRRGIEGFRRSHRDAQTTQRMLTRLGAPQRTAHFAD 301
Query 311 IHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAHVLHTHRNTL 370
M+ +LT++ + +FI TLG+ +SASP L T+LTYIN+QCNA+R A L+ HRNTL
Sbjct 302 TQMVELLTQDLEGVDEFIECTLGEFQSASPVLHATLLTYINQQCNAARTAKALYIHRNTL 361
Query 371 LRRLETAQRLLPRPLDHTIIQVAVAISALQWRGSQTSDPV 410
+ RLETA RLLP+P++ I+ +AVA+ LQWR + D +
Sbjct 362 VHRLETAHRLLPQPVEANIVHIAVALEVLQWRSDRDGDSL 401
>gi|289570513|ref|ZP_06450740.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289544267|gb|EFD47915.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=247
Score = 497 bits (1280), Expect = 1e-138, Method: Compositional matrix adjust.
Identities = 247/247 (100%), Positives = 247/247 (100%), Gaps = 0/247 (0%)
Query 191 KLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATRWVWVSDA 250
KLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATRWVWVSDA
Sbjct 1 KLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATRWVWVSDA 60
Query 251 ATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQRLAFFAD 310
ATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQRLAFFAD
Sbjct 61 ATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQRLAFFAD 120
Query 311 IHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAHVLHTHRNTL 370
IHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAHVLHTHRNTL
Sbjct 121 IHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAHVLHTHRNTL 180
Query 371 LRRLETAQRLLPRPLDHTIIQVAVAISALQWRGSQTSDPVETPVEGITSPPPESLGRRRS 430
LRRLETAQRLLPRPLDHTIIQVAVAISALQWRGSQTSDPVETPVEGITSPPPESLGRRRS
Sbjct 181 LRRLETAQRLLPRPLDHTIIQVAVAISALQWRGSQTSDPVETPVEGITSPPPESLGRRRS 240
Query 431 RLAQLER 437
RLAQLER
Sbjct 241 RLAQLER 247
>gi|240169039|ref|ZP_04747698.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC
12478]
Length=421
Score = 494 bits (1273), Expect = 9e-138, Method: Compositional matrix adjust.
Identities = 253/408 (63%), Positives = 321/408 (79%), Gaps = 0/408 (0%)
Query 1 VVLPKPTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSH 60
+V +P+PR RELIR+ A++AL+P PEW+ ELDRAT+AA+P+IA DP LA VV +ANR++
Sbjct 1 MVRQRPSPRIRELIREGARIALNPGPEWITELDRATVAANPAIADDPVLAKVVQKANRAN 60
Query 61 LIHFATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAF 120
L+H+A AN+R PG PVP NLG +PLRMARDLVRRGLD A DVYR G+ +AW+ W IAF
Sbjct 61 LVHWAAANMRDPGAPVPPNLGAEPLRMARDLVRRGLDTLAHDVYRTGEYIAWRLWLHIAF 120
Query 121 GLTTDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDG 180
LT DP EL ELL + RS ++FI+ATLAG+AAQ+QLE+ EL R HAE +V L+L+G
Sbjct 121 DLTADPAELRELLDVSARSVNDFIEATLAGIAAQIQLEHHELNRGSHAERLEVVGLLLEG 180
Query 181 APISRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASA 240
APISR+ AEA+LGYPL+R+HTAAI+W D+ D N LD A AF A+G Q L VASA
Sbjct 181 APISRERAEARLGYPLNRAHTAAIVWSDEIDGNHGDLDRAADAFSHAVGYAQQLTVVASA 240
Query 241 ATRWVWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLR 300
ATRWVW++DAA LD + + LD ARIA+GTTA G GF+RSH +AL TQR L RL+
Sbjct 241 ATRWVWLADAAGLDIAAVERALDSTAGARIAIGTTATGTGGFQRSHLEALTTQRTLMRLQ 300
Query 301 SQQRLAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAA 360
S QR+AFF+D+ M+A++T+NP +A++FI+STLGDLES SP+L TT+LT+INEQCNASRAA
Sbjct 301 SGQRVAFFSDVQMVALVTQNPQAASEFISSTLGDLESGSPELQTTLLTFINEQCNASRAA 360
Query 361 HVLHTHRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQWRGSQTSD 408
L+THRNTLLRR+E+AQRLLPRPL T ++VAVA+ AL+WRGS +
Sbjct 361 KRLYTHRNTLLRRIESAQRLLPRPLGRTSVEVAVALEALRWRGSDIGN 408
>gi|183981147|ref|YP_001849438.1| hypothetical protein MMAR_1127 [Mycobacterium marinum M]
gi|183174473|gb|ACC39583.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=406
Score = 462 bits (1189), Expect = 5e-128, Method: Compositional matrix adjust.
Identities = 235/401 (59%), Positives = 296/401 (74%), Gaps = 5/401 (1%)
Query 6 PTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSHLIHFA 65
P+PR ELIRQ AK L + +WLDE DR T+AA+P+IA DP LA R+ RS LIH+A
Sbjct 6 PSPRVGELIRQGAKAVLDGSQQWLDEYDRVTMAANPAIADDPVLAEATRRSIRSSLIHWA 65
Query 66 TANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFGLTTD 125
AN+ PG PV NLGP+PL +ARD+VRRGLD +R+ Q V W+ W +AFGLT+D
Sbjct 66 AANVSNPGAPVAPNLGPEPLSIARDMVRRGLDPF---TFRIAQTVGWRLWMGVAFGLTSD 122
Query 126 PQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGAPISR 185
P EL EL + +RS SEF++AT AG+AAQMQ E DEL R HAE R + LILDGAPISR
Sbjct 123 PDELRELFEVTYRSISEFVEATSAGIAAQMQRERDELARGTHAERREVTALILDGAPISR 182
Query 186 QSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATRWV 245
Q AEA+LGY L+R+HTAA+IW D+PD + N LD AFGRA +PL +A AATRWV
Sbjct 183 QRAEARLGYALNRTHTAAVIWSDEPDGDLNRLDRVVDAFGRAADFARPLTVIAGAATRWV 242
Query 246 WVSDAA--TLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQ 303
WV++AA TLD +++ Q + P ARIA+G A GI+GFRRSH +AL TQRM+A L S+Q
Sbjct 243 WVANAANATLDVEQVEQAVRDVPGARIAIGAAATGIEGFRRSHLEALTTQRMVAGLNSRQ 302
Query 304 RLAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAHVL 363
R+A FADI +IA++ +NP++A DFI +TLGD ESA +L TVLT++NEQC+ R VL
Sbjct 303 RVALFADIQLIALIAQNPEAANDFIKNTLGDFESAGAELHKTVLTFVNEQCSIGRTTKVL 362
Query 364 HTHRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQWRGS 404
+THRNTLLRRL+ AQ+LLPRPLDH+ + VAVA+ ALQWRG+
Sbjct 363 YTHRNTLLRRLDRAQQLLPRPLDHSSVHVAVALEALQWRGN 403
>gi|240167827|ref|ZP_04746486.1| hypothetical protein MkanA1_00825 [Mycobacterium kansasii ATCC
12478]
Length=394
Score = 461 bits (1187), Expect = 9e-128, Method: Compositional matrix adjust.
Identities = 225/393 (58%), Positives = 291/393 (75%), Gaps = 4/393 (1%)
Query 12 ELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSHLIHFATANLRK 71
ELIRQ A++ L+ PEW DE DR T+AA+PS+A DP LA R+ RS L+H+A AN+
Sbjct 3 ELIRQGARIVLNAPPEWFDEYDRQTMAANPSVADDPVLAAAARRSIRSSLMHWAAANVSN 62
Query 72 PGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFGLTTDPQELHE 131
PG PVP N+GP+PL +ARD+ RRGL+ +R V W+ W +I F L +DP EL E
Sbjct 63 PGAPVPPNVGPEPLSIARDMARRGLEPF---TFRPALTVGWRLWMDIGFKLASDPDELRE 119
Query 132 LLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGAPISRQSAEAK 191
LL + FRS S FIDAT AG+AAQ+Q E DEL R HAE R + LILDGAPISRQ AEA+
Sbjct 120 LLDVSFRSISNFIDATAAGIAAQVQQERDELARGTHAERREVTALILDGAPISRQRAEAR 179
Query 192 LGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATRWVWVSDAA 251
LGY L+R+H A+IW D+PD + + LD A AFG A G +PL +ASAATRWVWV ++A
Sbjct 180 LGYALNRAHIGAVIWSDEPDGDLSQLDRVADAFGDAAGFARPLTVIASAATRWVWVPESA 239
Query 252 TLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQRLAFFADI 311
LD + + + ++ P ARIA+GT A+GI+GFRRSH +AL TQRM+A L+S+QR+AFFAD+
Sbjct 240 -LDVELVRRAVEGTPGARIAIGTIAKGIEGFRRSHLEALTTQRMVAGLQSRQRVAFFADV 298
Query 312 HMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAHVLHTHRNTLL 371
+IA++T+N ++A +FI +TLGD ESA P+L TVLTYINEQC+ R +L+THRNTLL
Sbjct 299 QLIALITQNREAAEEFIKNTLGDFESAGPELHKTVLTYINEQCSVGRTTKLLYTHRNTLL 358
Query 372 RRLETAQRLLPRPLDHTIIQVAVAISALQWRGS 404
RRLE A++LLPRPL+H+ + VAVA+ ALQWRG
Sbjct 359 RRLERAEQLLPRPLEHSSVHVAVALEALQWRGK 391
>gi|240172052|ref|ZP_04750711.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC
12478]
Length=423
Score = 453 bits (1165), Expect = 3e-125, Method: Compositional matrix adjust.
Identities = 235/402 (59%), Positives = 300/402 (75%), Gaps = 0/402 (0%)
Query 6 PTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSHLIHFA 65
P+ R RELIR A++AL+P EWLD LD+ATL + IA DP LA V RA+R++L+H+A
Sbjct 20 PSARTRELIRAGARIALNPNQEWLDRLDKATLGKNAVIAEDPVLAAAVRRASRANLLHWA 79
Query 66 TANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFGLTTD 125
AN+R PG PV ANLGP+PL +ARDLVRRGLD++ L++YRVGQ+VAW+ W EI FGLT D
Sbjct 80 AANVRDPGAPVAANLGPEPLALARDLVRRGLDSTTLEIYRVGQDVAWRHWIEIVFGLTAD 139
Query 126 PQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGAPISR 185
P EL E+L + S S+FI ATLAG+AAQ++LE +EL HAE R IVELILDGA I +
Sbjct 140 PDELREVLVVSSLSISDFISATLAGIAAQLKLELNELACGTHAERREIVELILDGAAIGQ 199
Query 186 QSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATRWV 245
+ AEA+LGY LD+ HTAAI+W DD + + LD A A ALG + L A+AATRW+
Sbjct 200 ERAEARLGYSLDQPHTAAILWSDDFEGDHIFLDKAADAVSYALGSTRALTVTATAATRWI 259
Query 246 WVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQRL 305
WV DA LD D I + L + P ARIA+G A GI+GFRRSH DALATQRM+ RL+S +R+
Sbjct 260 WVPDAVDLDVDTIEKALTNCPGARIAIGPNASGIEGFRRSHLDALATQRMMTRLQSPRRI 319
Query 306 AFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAHVLHT 365
A FADI ++ ++T++ +A DFI+STLGD SASP+L T+LTYI +QCN SRAA +L++
Sbjct 320 ALFADIQLVNLITQDASAAEDFISSTLGDFASASPELRATLLTYIRQQCNVSRAAKLLYS 379
Query 366 HRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQWRGSQTS 407
HRNTLLRRLE A R+LPRPL + + VAVA+ AL+W G+ TS
Sbjct 380 HRNTLLRRLEAAARMLPRPLPQSYVHVAVALEALEWYGNHTS 421
>gi|118617459|ref|YP_905791.1| transcriptional activator protein [Mycobacterium ulcerans Agy99]
gi|118569569|gb|ABL04320.1| transcriptional activator protein [Mycobacterium ulcerans Agy99]
Length=336
Score = 447 bits (1150), Expect = 2e-123, Method: Compositional matrix adjust.
Identities = 218/330 (67%), Positives = 259/330 (79%), Gaps = 0/330 (0%)
Query 7 TPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSHLIHFAT 66
+PR R+LIR+AA+VAL+P+ +WL+E DRATLA P IA +P LATV+SRANR++L HFA
Sbjct 7 SPRVRDLIREAARVALNPSQQWLEEFDRATLATAPPIAENPDLATVISRANRANLRHFAA 66
Query 67 ANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFGLTTDP 126
+NLR PG PVPANLG +PLRMARDLVR GLD ALDVYRVGQNVAWQRWT+I FGLTTDP
Sbjct 67 SNLRNPGDPVPANLGAEPLRMARDLVRLGLDTLALDVYRVGQNVAWQRWTDIVFGLTTDP 126
Query 127 QELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGAPISRQ 186
QEL ELL +PFRSA FID TLAG+AAQM+LE+ EL+R++ AE RRIVEL+L+GAPISR
Sbjct 127 QELRELLDVPFRSAVAFIDTTLAGIAAQMELEHHELSRNICAERRRIVELLLNGAPISRD 186
Query 187 SAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATRWVW 246
SAE++LGYPLDRSHTAAIIW D P+ + LD AF A+GC L +++A TRWVW
Sbjct 187 SAESRLGYPLDRSHTAAIIWSDRPNGDHRDLDRAVDAFCNAVGCASSLAIMSAATTRWVW 246
Query 247 VSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQRLA 306
V D D I QV+ PH RIA+GTT G+DGFRRS RDAL RML RLRS Q++A
Sbjct 247 VRDVDVFDCSHIRQVMRELPHVRIAIGTTEPGVDGFRRSRRDALTAARMLIRLRSPQQVA 306
Query 307 FFADIHMIAVLTENPDSAADFITSTLGDLE 336
FF D+ MIA+LTENPD A +FI +TLGD E
Sbjct 307 FFGDVEMIALLTENPDGADEFIKNTLGDFE 336
>gi|294633995|ref|ZP_06712551.1| regulatory protein [Streptomyces sp. e14]
gi|292829991|gb|EFF88344.1| regulatory protein [Streptomyces sp. e14]
Length=425
Score = 410 bits (1053), Expect = 3e-112, Method: Compositional matrix adjust.
Identities = 223/400 (56%), Positives = 278/400 (70%), Gaps = 4/400 (1%)
Query 6 PTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPS--IAADPALATVVSRANRSHLIH 63
P+PR RELIR+ A++ALHP EWLDELD ATL IA+DP LA RANRS+L+
Sbjct 26 PSPRVRELIRRGAEIALHPPDEWLDELDAATLTGETKRQIASDPVLAAGTRRANRSNLLF 85
Query 64 FATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFGLT 123
+A AN+R PG+PVPAN PL ARD+VRRGLD SALD YR G++VA + WT+IA LT
Sbjct 86 WAAANVRDPGEPVPANDTETPLATARDIVRRGLDESALDAYRAGESVALRLWTQIACSLT 145
Query 124 TDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGAPI 183
+DP EL ELL + RS S F+D TL+ +A +M+ E DELTR HAE R V L+L+GAPI
Sbjct 146 SDPGELRELLDVSLRSISAFVDDTLSAIATRMRAERDELTRGTHAERRETVSLLLEGAPI 205
Query 184 SRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATR 243
+R+ AE++LGY L +HTAAI+W D D + LD A A A G +PL +A AATR
Sbjct 206 TRERAESRLGYRLGATHTAAIVWTDAADPDLGRLDRAADALAEAAGHTRPLSVLAGAATR 265
Query 244 WVWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQ 303
WVWV DT ++ LD P RIAVG+TA G+DGFRRSH DAL TQ+MLARL S
Sbjct 266 WVWVH--GRPDTGQLRTALDRLPDVRIAVGSTAPGLDGFRRSHLDALTTQQMLARLTSPS 323
Query 304 RLAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAHVL 363
RLA +I ++A+LT +P+SA F+T TLGDLE+A P++ T+ +I EQCNA+RAA L
Sbjct 324 RLASHHEIELVALLTSDPESADRFVTRTLGDLETAPPEVAETLRVFIAEQCNATRAAARL 383
Query 364 HTHRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQWRG 403
THRNTLLRRL A RLLPRPL ++V A+ L+WRG
Sbjct 384 FTHRNTLLRRLARADRLLPRPLAEHPVEVGAALEILRWRG 423
>gi|29827930|ref|NP_822564.1| hypothetical protein SAV_1389 [Streptomyces avermitilis MA-4680]
gi|29605031|dbj|BAC69099.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length=425
Score = 365 bits (937), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 199/400 (50%), Positives = 268/400 (67%), Gaps = 2/400 (0%)
Query 6 PTPRGRELIRQAAKVALHPTPEWLDELDRATLAAH--PSIAADPALATVVSRANRSHLIH 63
P+ R RELI + A VA EWL E++ ATL+A ++A DP L + R +R++++H
Sbjct 24 PSDRIRELIGRGAAVAARAPEEWLREIEDATLSAEYLQALADDPDLTAQIRRTSRANVLH 83
Query 64 FATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFGLT 123
+AT N+R PG PVPAN+GP+ L AR+LVRRGL+ SAL YR GQN AW RW IAF LT
Sbjct 84 WATWNVRSPGAPVPANVGPEALATARELVRRGLNDSALQSYRSGQNAAWLRWMSIAFELT 143
Query 124 TDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGAPI 183
+DP EL ELL + RS S F+DAT+A ++AQ+Q E DELTR +AE R V L+L+GAPI
Sbjct 144 SDPAELRELLDVSTRSISAFVDATIAAVSAQIQAERDELTRGTNAERREAVTLLLNGAPI 203
Query 184 SRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATR 243
A A+LGY ++++HTAAI+W D + + L+ A A +A G + L A AA
Sbjct 204 HPDRASARLGYRVEQTHTAAIVWSDAAESDLGDLERAADALAKAAGVSRFLSVTAGAAML 263
Query 244 WVWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQ 303
WVW+ AA T+R+ + LD P AR A+G+T G++GFRRSH DA+ TQRM+ARL + +
Sbjct 264 WVWLPSAALPATNRLERHLDSHPTARAALGSTGHGVEGFRRSHLDAMTTQRMMARLHTVR 323
Query 304 RLAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAHVL 363
+A F + ++A++T P A F+ TLG L + +P+L V YI+E+CNA+RAA L
Sbjct 324 SVARFETVEIVALVTREPQQADQFVRRTLGGLATGAPELREAVAAYIHEECNATRAAARL 383
Query 364 HTHRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQWRG 403
THRNTLLRRLE AQRLLP PL +++AVA+ L WRG
Sbjct 384 FTHRNTLLRRLERAQRLLPHPLAGNTVRIAVALDVLHWRG 423
>gi|288916819|ref|ZP_06411192.1| putative transcriptional regulator, PucR family [Frankia sp.
EUN1f]
gi|288351704|gb|EFC85908.1| putative transcriptional regulator, PucR family [Frankia sp.
EUN1f]
Length=410
Score = 357 bits (915), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 201/398 (51%), Positives = 264/398 (67%), Gaps = 4/398 (1%)
Query 6 PTPRGRELIRQAAKVALHPTPEWLDELDRATLA--AHPSIAADPALATVVSRANRSHLIH 63
P+ R REL+R+ A++ LHP P+WLDELD ATLA A +A DP LA + R+NR++L +
Sbjct 6 PSSRIRELLRRGAELVLHPNPDWLDELDAATLAGPARQQVAEDPVLAAAIRRSNRANLRY 65
Query 64 FATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFGLT 123
+A AN+R PG+ VPA+LG PL +ARDLVRRGLD + L YR GQ+VA + W EI F LT
Sbjct 66 WAAANIRAPGERVPADLGDVPLAVARDLVRRGLDDAMLGAYRSGQSVALRYWIEIVFTLT 125
Query 124 TDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGAPI 183
+DP+EL LL + RS + +I+ T+ +AAQM E +LT HAE R V L+LDGAP+
Sbjct 126 SDPEELRALLDVSCRSIATYIEDTVDAIAAQMDRERADLTHGTHAERREAVTLLLDGAPL 185
Query 184 SRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATR 243
S Q A+ +LGY L+ +H AA+IW DDPD + LD A F A G P+PL +ASAATR
Sbjct 186 SPQRAQQRLGYRLEGAHWAAVIWSDDPDIDLAALDRAADLFAVAAGDPRPLTVLASAATR 245
Query 244 WVWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQ 303
WVWV D R+H P ARIA+G +DGFRRSH DAL QRMLARL + +
Sbjct 246 WVWVH--GEPDLARLHATAAEIPAARIAIGRRRVDLDGFRRSHHDALTVQRMLARLGAPR 303
Query 304 RLAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAHVL 363
++A +AD+ ++A+LT + + A F+ LGDL +A P+L V T++ CNA+ AA L
Sbjct 304 QIATYADVELVALLTTDRERADQFVAGALGDLATAPPELREAVRTFVAAGCNATAAAGRL 363
Query 364 HTHRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQW 401
+THRNTLLRRL A+RLLP PL +I VA A+ W
Sbjct 364 YTHRNTLLRRLARAERLLPVPLADNLIPVAAALEVQHW 401
>gi|296393206|ref|YP_003658090.1| PucR family transcriptional regulator [Segniliparus rotundus
DSM 44985]
gi|296180353|gb|ADG97259.1| putative transcriptional regulator, PucR family [Segniliparus
rotundus DSM 44985]
Length=410
Score = 346 bits (888), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 187/406 (47%), Positives = 255/406 (63%), Gaps = 3/406 (0%)
Query 4 PKPTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHP--SIAADPALATVVSRANRSHL 61
P P+ R +EL+R+ A +AL P W++EL ATL ++A DP LA V R N ++
Sbjct 6 PVPSERIQELMRRGATIALTPQAHWIEELHTATLGGQRMRAVADDPVLAEAVRRTNLANW 65
Query 62 IHFATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFG 121
+H+A++N +PG+ VP NL P L +RD+VRRGLD +ALD YR GQ+VAW+RW +I FG
Sbjct 66 LHWASSNAARPGERVPPNLSPVVLETSRDMVRRGLDQTALDTYRTGQSVAWRRWMDICFG 125
Query 122 LTTDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGA 181
LT+DP+ELHELL L RS F+D T+ +A++ E D+L R HA+ V LIL+GA
Sbjct 126 LTSDPRELHELLDLSERSIRTFLDDTIDATSARIAEERDQLVRGSHADRLAAVSLILEGA 185
Query 182 PISRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAA 241
PI R AE +LGY L H AA++W + L+ A AF R G + L +AS+A
Sbjct 186 PIPRARAEEQLGYQLTGPHVAAVVW-GSASTPASRLETVAEAFTRDSGAARRLTVLASSA 244
Query 242 TRWVWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRS 301
T W+W+ AA + + P + +G R IDGFRRSH DA+ATQRML RL S
Sbjct 245 TLWLWLPVAAAPACAHVQAHIADVPDVWLGIGRPGRDIDGFRRSHLDAIATQRMLTRLTS 304
Query 302 QQRLAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAH 361
++A + DI ++A+L+ +P A +F+ LG L +A P + TVLTYI EQCN SRAA
Sbjct 305 PHQVAHYDDIALVALLSSDPARADEFVRDALGGLLAAEPDIRDTVLTYIREQCNTSRAAE 364
Query 362 VLHTHRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQWRGSQTS 407
L+THRNT++RRL A LLP PL I+ VA A+ ++WRG T+
Sbjct 365 RLYTHRNTVIRRLARADELLPHPLPRNIVAVAAALEIVRWRGQSTA 410
>gi|284990852|ref|YP_003409406.1| putative PucR family transcriptional regulator [Geodermatophilus
obscurus DSM 43160]
gi|284064097|gb|ADB75035.1| putative transcriptional regulator, PucR family [Geodermatophilus
obscurus DSM 43160]
Length=438
Score = 316 bits (809), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 196/430 (46%), Positives = 253/430 (59%), Gaps = 27/430 (6%)
Query 1 VVLPKPTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPS--IAADPALATVVSRANR 58
V P +PR REL R+ A+VAL P +W++EL A L +A DP LA R N
Sbjct 8 VRWPDTSPRVRELFRRGAEVALDPRADWVEELHAAALGGQRMRPVAEDPVLAAATRRVNL 67
Query 59 SHLIHFATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEI 118
++L+H+A AN++ PG+ VP N GP+ L ARDLVRRGLD S LD YR Q VAW+RW +I
Sbjct 68 ANLLHWAAANVQHPGRRVPPNTGPESLDTARDLVRRGLDESVLDAYRAAQGVAWRRWMQI 127
Query 119 AFGLTTDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELIL 178
F LT DP EL ELL + S + FI+ T+A + +M+ E DELTR HAE R V L+L
Sbjct 128 CFELTADPAELRELLDVSALSIATFIEDTVAATSERMRAERDELTRGAHAERRAAVTLLL 187
Query 179 DGAPISRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVA 238
+GAPISR AEA+LGY L HTAA++W ++ L+ A A RA G L VA
Sbjct 188 EGAPISRARAEAQLGYGLAGPHTAAVVWSGSGTASEQ-LEAAAEAVVRASGAAHRLTVVA 246
Query 239 SAATRWVWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLAR 298
SAA WVW+ A D ++ L P R+AVG R +DGFRRSH DA TQRM+AR
Sbjct 247 SAAALWVWLPVATAPDAGKLAGELAAHPDVRVAVGRPGRDVDGFRRSHLDAATTQRMVAR 306
Query 299 LR--------SQQR----------------LAFFADIHMIAVLTENPDSAADFITSTLGD 334
L+ SQ R +A + D+ ++A+LT P A +F+ TLGD
Sbjct 307 LQKDPAAPHHSQARGGTLQRGHPTRQVPCQVARYEDVQLVALLTAEPTLADEFLADTLGD 366
Query 335 LESASPQLLTTVLTYINEQCNASRAAHVLHTHRNTLLRRLETAQRLLPRPLDHTIIQVAV 394
L A + VLTY+ E + SR A L+THRNT+LRRL A LLPRPL ++ VA
Sbjct 367 LLHAEAETRHAVLTYVRELGSTSRTAERLYTHRNTVLRRLARADELLPRPLAQNVVAVAA 426
Query 395 AISALQWRGS 404
A+ L+WRG+
Sbjct 427 ALEVLRWRGT 436
>gi|289705749|ref|ZP_06502133.1| conserved hypothetical protein [Micrococcus luteus SK58]
gi|289557589|gb|EFD50896.1| conserved hypothetical protein [Micrococcus luteus SK58]
Length=414
Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 181/404 (45%), Positives = 241/404 (60%), Gaps = 3/404 (0%)
Query 4 PKPTPRGRELIRQAAKVALHPTPEWLDELDRATLAA--HPSIAADPALATVVSRANRSHL 61
P P+P R L+RQAA++AL P PEW ++D A LA IAADP LA + R ++L
Sbjct 12 PAPSPPVRRLLRQAAELALRPRPEWTADIDAAALAGTRMEVIAADPVLAEGIRRTTTANL 71
Query 62 IHFATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFG 121
+H+A AN++ PG+ VP NL PD L ARDL RRGL +ALD YR GQ++A +RW I F
Sbjct 72 LHWAAANVKAPGRRVPPNLEPDNLETARDLARRGLGRTALDSYRTGQSLASRRWMAICFE 131
Query 122 LTTDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGA 181
LT D LHELL + S + FID TL + A ++ E D+L R HAE R +V I++GA
Sbjct 132 LTQDLSLLHELLDVSLLSIATFIDDTLDAVFAVLEAERDQLHRGSHAERRAVVARIVEGA 191
Query 182 PISRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAA 241
PISR AE +LG+PL H AA++W D G + L VAS+A
Sbjct 192 PISRARAETQLGHPLTGPHVAAVVWTTLEGDPAALEAAAEALAQAG-GTARRLTVVASSA 250
Query 242 TRWVWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRS 301
+ W+W+ AA D + L P +A+G + GFRRSH DA A QRM+ RL S
Sbjct 251 SHWLWLPLAAAPAVDDVASRLAGHPEVSVAIGRPGHDVVGFRRSHLDAAAAQRMMTRLAS 310
Query 302 QQRLAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAH 361
QR+A + D+ ++ VLT P A ++T LGDL +A+ ++ VLT + E+ N SR A
Sbjct 311 PQRIARYQDVQLVDVLTAEPVRADGYVTDVLGDLATAAQEIHDAVLTLVQERFNTSRTAE 370
Query 362 VLHTHRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQWRGSQ 405
LHTHRNT++RRL A LLPRPL + VA A+ LQWRG++
Sbjct 371 RLHTHRNTVIRRLARADELLPRPLAENPVDVAAALQVLQWRGAR 414
>gi|296141540|ref|YP_003648783.1| PucR family transcriptional regulator [Tsukamurella paurometabola
DSM 20162]
gi|296029674|gb|ADG80444.1| putative transcriptional regulator, PucR family [Tsukamurella
paurometabola DSM 20162]
Length=405
Score = 312 bits (800), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 177/400 (45%), Positives = 251/400 (63%), Gaps = 5/400 (1%)
Query 4 PKPTPRGRELIRQAAKVALHPTPEWLDELDRATLAA--HPSIAADPALATVVSRANRSHL 61
P+P+ + ++LIR+ A++A +P EW+ EL ATLA IAADP LA +V ++N + +
Sbjct 6 PEPSEQVKDLIRRGAEIASNPPKEWVAELHDATLAGAIMQGIAADPTLAELVRQSNMAAM 65
Query 62 IHFATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFG 121
+ +AT NLR PG VP N + L +ARDLVRRGLD +D YR G N AW+RW E+ F
Sbjct 66 LLWATHNLRHPGARVPPNTDDEALAVARDLVRRGLDLHGIDSYRTGLNAAWRRWMELCFT 125
Query 122 LTTDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGA 181
LT DP EL ELL++ + S S +ID T+ +A +M E+++LT +A+ + L+L+GA
Sbjct 126 LTADPDELRELLSITWHSMSTYIDDTITAIAIRMAAEHEQLTTGTNADRLATISLVLEGA 185
Query 182 PISRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAA 241
PISR AE +LGY L HTAA++W + + LD A+A R G P+PL VASA+
Sbjct 186 PISRVRAEQQLGYRLTGPHTAAVVWT---SGDTSDLDAAAQALARHAGTPRPLTVVASAS 242
Query 242 TRWVWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRS 301
WVW+ ++ + + L P R+A+G +DGFRRSH DA + QR+L RL S
Sbjct 243 ALWVWLPGTVVPNSSDLARELADHPEVRVALGRPGDDLDGFRRSHLDAGSAQRLLTRLGS 302
Query 302 QQRLAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAH 361
+R+A + DI +I+++T + A +F+ TLG+L +A TV TY++EQ N SR A
Sbjct 303 PRRVARYDDIALISLITADTGKADEFVRDTLGELLTADQDTRDTVATYVSEQFNTSRTAE 362
Query 362 VLHTHRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQW 401
L+THRNT++RRL A LLPRPL VAVA+ L+W
Sbjct 363 RLYTHRNTVIRRLTRADELLPRPLAENPTGVAVALDVLRW 402
>gi|78059959|ref|YP_366534.1| putative regulator of polyketide synthase expression [Burkholderia
sp. 383]
gi|77964509|gb|ABB05890.1| putative regulator of polyketide synthase expression [Burkholderia
sp. 383]
Length=394
Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 163/392 (42%), Positives = 226/392 (58%), Gaps = 2/392 (0%)
Query 14 IRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSHLIHFATANLRKPG 73
+RQ A++AL+ EWL ELD+ +A P+++ DP LA V R NR+ LIH+ATANL P
Sbjct 1 MRQGAEIALNVQTEWLQELDKENVATSPTMS-DPVLAAAVRRINRNGLIHWATANLENPC 59
Query 74 QPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFGLTTDPQELHELL 133
PV L D L A++LVRRGL R Q+V WQRW ++AF LT DP EL E L
Sbjct 60 APVSRFLSADMLSSAQELVRRGLTDLVFVAARSSQSVVWQRWMDLAFTLTQDPVELREFL 119
Query 134 TLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGAPISRQSAEAKLG 193
+ RS + FID + G+A M+ E + R HA+ R +V I++G I Q A +LG
Sbjct 120 AVSSRSIAAFIDTNMVGMAEFMRAEREARLRGTHADRRELVTQIVEGTTIGAQEASRRLG 179
Query 194 YPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATRWVWVS-DAAT 252
Y L++ H AAI+W ++ D L+ A A + G L+ VA+ AT WVW D
Sbjct 180 YTLEQRHHAAIVWSEEADIELGLLERAADALAQCAGTRNALVVVANTATLWVWTYHDGKP 239
Query 253 LDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQRLAFFADIH 312
LD + + ++ P +AV T G++GFR H DALATQR+L RL + + +
Sbjct 240 LDMPSLQRAINALPGVHMAVATAGSGMEGFRHGHLDALATQRLLGRLHAGVGVVHADSMS 299
Query 313 MIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAHVLHTHRNTLLR 372
+IA++T + +S F+T+TLG+L SA L + ++ E C+ + AA H HRNTLLR
Sbjct 300 LIALMTNHMESLQQFVTNTLGNLASADKSLRDALRAFLAEGCSVTDAAEKTHVHRNTLLR 359
Query 373 RLETAQRLLPRPLDHTIIQVAVAISALQWRGS 404
RLE A+ LLPRPL + VA A+ L W S
Sbjct 360 RLERAESLLPRPLAQQRLHVAAALEVLHWIAS 391
>gi|26989534|ref|NP_744959.1| hypothetical protein PP_2815 [Pseudomonas putida KT2440]
gi|24984409|gb|AAN68423.1|AE016475_2 conserved hypothetical protein [Pseudomonas putida KT2440]
Length=417
Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 148/400 (37%), Positives = 223/400 (56%), Gaps = 2/400 (0%)
Query 4 PKPTPRGRELIRQAAKVALHPTPEWLDELDRATLAA--HPSIAADPALATVVSRANRSHL 61
P+P+ REL+R+ A++A EW++ L+++ ++ + DP + RANR+ L
Sbjct 9 PRPSETVRELMRKGAELAQALPAEWVERLNQSLFSSPEDARLLEDPVILAACRRANRAEL 68
Query 62 IHFATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFG 121
+H+A ANL++PG+PV + D + AR+L RRGL ++V R QN AW W ++AF
Sbjct 69 LHWANANLQRPGEPVEPYVSADMVDTARELARRGLSELLMNVARSTQNAAWDLWMKMAFS 128
Query 122 LTTDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGA 181
LT DP L E L + RS SEFID+ + + + E D + R +V +LDG
Sbjct 129 LTQDPAVLEEFLEVSSRSISEFIDSNMRVVTQIILEEKSAQAHDDPIDKRSLVSRLLDGR 188
Query 182 PISRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAA 241
+ + +LGY L + H A ++W + PD L+ ARA + G PLI A A
Sbjct 189 DVDAEQFGRRLGYSLAQRHHACLVWSETPDAEIRPLEDMARALAQLTGTVAPLIVFAGPA 248
Query 242 TRWVWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRS 301
T W W + A LD + + V P R A+G+ G++GFRRSH +AL TQR++ RL
Sbjct 249 TLWAWSNAAKPLDLNLLQDVARQFPKIRAAIGSAGAGMNGFRRSHLEALTTQRLMGRLAG 308
Query 302 QQRLAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAH 361
+A + M++++T++ +A F+ STLG L + L ++ ++ CN ++ A
Sbjct 309 SPAVATIDQVRMVSLMTQDARAARQFVLSTLGRLATEPTVLQHSLHAFLANGCNITQTAE 368
Query 362 VLHTHRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQW 401
VL THRNTLLRRLE AQ LLP PL IQ+A A+ + W
Sbjct 369 VLGTHRNTLLRRLERAQDLLPIPLADHRIQIAAALELVIW 408
>gi|254240668|ref|ZP_04933990.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|12698406|gb|AAK01520.1| putative transcriptional activator [Pseudomonas aeruginosa]
gi|126194046|gb|EAZ58109.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
Length=417
Score = 263 bits (671), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 145/400 (37%), Positives = 222/400 (56%), Gaps = 2/400 (0%)
Query 4 PKPTPRGRELIRQAAKVALHPTPEWLDELDRATLAA--HPSIAADPALATVVSRANRSHL 61
P+P+ REL+R+ A++A PEW++ L++A ++ + DP + RANR+ L
Sbjct 9 PRPSEAVRELMRKGAELAQTLPPEWVERLNQALFSSPEDAKLLEDPVILAACRRANRAEL 68
Query 62 IHFATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFG 121
+H+A ANL++PG+PV + D + AR+L RRGL ++V R QN AW+ W ++AF
Sbjct 69 LHWANANLQRPGEPVQPYVSADMVDTARELARRGLSELLMNVARSTQNTAWELWMKMAFN 128
Query 122 LTTDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGA 181
LT DP+ L E L + RS SEFID+ + + + E D + R +V +L+G
Sbjct 129 LTQDPRVLEEFLEVSSRSISEFIDSNMRVVTQIILEEKSAQAHDDPIDKRSLVSRLLEGR 188
Query 182 PISRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAA 241
+ + +LGY L + H A ++W + PD L+ AR + G PLI A A
Sbjct 189 DVDTEQFGRRLGYSLFQKHYAGLVWCESPDAEIRLLEDVARTLAQLTGTAAPLIVFAGPA 248
Query 242 TRWVWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRS 301
T WVW A LD + + + R A+G+ G++GFRRSH +AL TQR++ RL
Sbjct 249 TLWVWSHAAKPLDLNLLQGIALRFSGIRAAIGSPGTGVNGFRRSHLEALTTQRLMGRLAG 308
Query 302 QQRLAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAH 361
+A + M++++T++ +A F+ STLG L + L ++ ++ CN ++ A
Sbjct 309 APAVATIDQVRMVSLMTQDDRAARQFVLSTLGRLATEPSVLQRSLHAFLANGCNVTQTAE 368
Query 362 VLHTHRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQW 401
L THRNTLLRRLE AQ LLP L IQ+A A+ + W
Sbjct 369 ALGTHRNTLLRRLERAQDLLPVRLADHRIQIAAALELVIW 408
>gi|296140575|ref|YP_003647818.1| PucR family transcriptional regulator [Tsukamurella paurometabola
DSM 20162]
gi|296028709|gb|ADG79479.1| putative transcriptional regulator, PucR family [Tsukamurella
paurometabola DSM 20162]
Length=406
Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 167/401 (42%), Positives = 228/401 (57%), Gaps = 3/401 (0%)
Query 4 PKPTPRGRELIRQAAKVALHPTPEWLDELDRATLAA--HPSIAADPALATVVSRANRSHL 61
P+P R LIR+ A+ L + +DEL+ A AA + ++ DP L R NR+++
Sbjct 6 PRPERRIAALIREVAERLLASSDAAVDELNAAAHAAADYRAVLEDPQLVAADRRMNRTNM 65
Query 62 IHFATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFG 121
+H+ +ANL+ PG VP + PD L++ARD+VRRGLD L +R Q+ AW W + F
Sbjct 66 LHWLSANLQDPGARVPPSNDPDILQLARDVVRRGLDMHDLGSWRGAQHGAWSAWVDECFA 125
Query 122 LTTDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGA 181
+T D EL EL+ + RS S FID ++A L ++ E EL R AE V+L+L+GA
Sbjct 126 VTDDLDELRELMKISERSMSTFIDDSIAALDEYVEQERAELARGASAERHATVQLLLEGA 185
Query 182 PISRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAA 241
PI R AE++LGY L SH AAI W D D LD A A RA G P+ L ASA+
Sbjct 186 PIGRARAESRLGYALTGSHVAAITW-SDCADAAAGLDAAAEAMMRACGAPRRLTLNASAS 244
Query 242 TRWVWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRS 301
WVW + + + VL +A G +DGFRRSH DA A QR+LAR+ S
Sbjct 245 ALWVWAPAGSVPTVEDMDAVLADRTGIHVAFGRPGEDLDGFRRSHLDATAAQRVLARVGS 304
Query 302 QQRLAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAH 361
+R+ + D+ +I+VLT + A F++ TLGDL +A L T LTY+ E+ NAS AA
Sbjct 305 ARRVVRYEDVALISVLTADMAQADQFVSDTLGDLATADATLRDTALTYVRERFNASAAAD 364
Query 362 VLHTHRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQWR 402
L+THRNT+ RRL +LLP PL V A+ +Q R
Sbjct 365 KLYTHRNTVERRLARVDQLLPAPLADNAASVVAALMLVQLR 405
>gi|107101671|ref|ZP_01365589.1| hypothetical protein PaerPA_01002715 [Pseudomonas aeruginosa
PACS2]
Length=399
Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 141/390 (37%), Positives = 215/390 (56%), Gaps = 2/390 (0%)
Query 14 IRQAAKVALHPTPEWLDELDRATLAA--HPSIAADPALATVVSRANRSHLIHFATANLRK 71
+R+ A++A PEW++ L++A ++ + DP + RANR+ L+H+A ANL++
Sbjct 1 MRKGAELAQALPPEWVERLNQALFSSPEDAKLLEDPVILAACRRANRAELLHWANANLQR 60
Query 72 PGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFGLTTDPQELHE 131
PG+PV + D + AR+L RRGL ++V R QN AW+ W ++AF LT DP+ L E
Sbjct 61 PGEPVQPYVSADMVDTARELARRGLSELLMNVARSTQNTAWELWMKMAFNLTQDPRVLEE 120
Query 132 LLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGAPISRQSAEAK 191
L + RS SEFID+ + + + E D + R +V +LDG + + +
Sbjct 121 FLEVSSRSISEFIDSNMRVVTQIILEEKSAQAHDDPIDKRSLVSRLLDGRDVDTEQFGRR 180
Query 192 LGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATRWVWVSDAA 251
LGY L + H A ++W + PD L+ AR + G PLI A AT WVW A
Sbjct 181 LGYSLFQKHYAGLVWCESPDAEIRLLEDVARTLAQLTGTAAPLIVFAGPATLWVWSHAAK 240
Query 252 TLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQRLAFFADI 311
LD + + + R A+G+ G++GFRRSH +AL TQR++ RL +A +
Sbjct 241 PLDLNLLQGIALRFSGIRAAIGSPGTGVNGFRRSHLEALTTQRLMGRLAGAPAVATIDQV 300
Query 312 HMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAHVLHTHRNTLL 371
M++++T++ +A F+ STLG L + L ++ ++ CN ++ A L THRNTLL
Sbjct 301 RMVSLMTQDDRAARQFVLSTLGRLATEPSVLQRSLHAFLANGCNVTQTAEALGTHRNTLL 360
Query 372 RRLETAQRLLPRPLDHTIIQVAVAISALQW 401
RRLE AQ LLP L IQ+A A+ + W
Sbjct 361 RRLERAQDLLPVRLADHRIQIAAALELVIW 390
>gi|313110892|ref|ZP_07796735.1| hypothetical protein PA39016_002840001 [Pseudomonas aeruginosa
39016]
gi|310883237|gb|EFQ41831.1| hypothetical protein PA39016_002840001 [Pseudomonas aeruginosa
39016]
Length=399
Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 141/390 (37%), Positives = 215/390 (56%), Gaps = 2/390 (0%)
Query 14 IRQAAKVALHPTPEWLDELDRATLAA--HPSIAADPALATVVSRANRSHLIHFATANLRK 71
+R+ A++A PEW++ L++A ++ + DP + RANR+ L+H+A ANL++
Sbjct 1 MRKGAELAQALPPEWVERLNQALFSSPEDAKLLEDPVILAACRRANRAELLHWANANLQR 60
Query 72 PGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFGLTTDPQELHE 131
PG+PV + D + AR+L RRGL ++V R QN AW+ W ++AF LT DP+ L E
Sbjct 61 PGEPVQPYVSADMVDTARELARRGLSELLMNVARSTQNTAWELWMKMAFNLTQDPRVLEE 120
Query 132 LLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGAPISRQSAEAK 191
L + RS SEFID+ + + + E D + R +V +LDG + + +
Sbjct 121 FLEVSSRSISEFIDSNMRVVTQIILEEKSAQAHDDPIDKRSLVSRLLDGRDVDTEQFGRR 180
Query 192 LGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATRWVWVSDAA 251
LGY L + H A ++W + PD L+ AR + G PLI A AT WVW A
Sbjct 181 LGYSLFQKHYAGLVWCESPDAEIRLLEDVARTLAQLTGTAAPLIVFAGPATLWVWSHAAK 240
Query 252 TLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQRLAFFADI 311
LD + + + R A+G+ G++GFRRSH +AL TQR++ RL +A +
Sbjct 241 PLDLNLLQGIALRFSGIRAAIGSPGTGVNGFRRSHLEALTTQRLMGRLAGAPAVATIDQV 300
Query 312 HMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAHVLHTHRNTLL 371
M++++T++ +A F+ STLG L + L ++ ++ CN ++ A L THRNTLL
Sbjct 301 RMVSLMTQDDRAARQFVLSTLGRLATEPSVLQRSLHAFLANGCNVTQTAEALGTHRNTLL 360
Query 372 RRLETAQRLLPRPLDHTIIQVAVAISALQW 401
RRLE AQ LLP L IQ+A A+ + W
Sbjct 361 RRLERAQDLLPVRLADHRIQIAAALELVIW 390
>gi|218891802|ref|YP_002440669.1| hypothetical protein PLES_30801 [Pseudomonas aeruginosa LESB58]
gi|218772028|emb|CAW27807.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
Length=399
Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 140/390 (36%), Positives = 215/390 (56%), Gaps = 2/390 (0%)
Query 14 IRQAAKVALHPTPEWLDELDRATLAA--HPSIAADPALATVVSRANRSHLIHFATANLRK 71
+R+ A++A PEW++ L++A ++ + DP + RANR+ L+H+A ANL++
Sbjct 1 MRKGAELAQTLPPEWVERLNQALFSSPEDAKLLEDPVILAACRRANRAELLHWANANLQR 60
Query 72 PGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFGLTTDPQELHE 131
PG+PV + D + AR+L RRGL ++V R QN AW+ W ++AF LT DP+ L E
Sbjct 61 PGEPVQPYVSADMVDTARELARRGLSELLMNVARSTQNTAWELWMKMAFNLTQDPRVLEE 120
Query 132 LLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGAPISRQSAEAK 191
L + RS SEFID+ + + + E D + R +V +L+G + + +
Sbjct 121 FLEVSSRSISEFIDSNMRVVTQIILEEKSAQAHDDPIDKRSLVSRLLEGRDVDTEQFGRR 180
Query 192 LGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATRWVWVSDAA 251
LGY L + H A ++W + PD L+ AR + G PLI A AT WVW A
Sbjct 181 LGYSLFQKHYAGLVWCESPDAEIRLLEDVARTLAQLTGTAAPLIVFAGPATLWVWSHAAK 240
Query 252 TLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQRLAFFADI 311
LD + + + R A+G+ G++GFRRSH +AL TQR++ RL +A +
Sbjct 241 PLDLNLLQGIALRFSGIRAAIGSPGTGVNGFRRSHLEALTTQRLMGRLAGAPAVATIDQV 300
Query 312 HMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAHVLHTHRNTLL 371
M++++T++ +A F+ STLG L + L ++ ++ CN ++ A L THRNTLL
Sbjct 301 RMVSLMTQDDRAARQFVLSTLGRLATEPSVLQRSLHAFLANGCNVTQTAEALGTHRNTLL 360
Query 372 RRLETAQRLLPRPLDHTIIQVAVAISALQW 401
RRLE AQ LLP L IQ+A A+ + W
Sbjct 361 RRLERAQDLLPVRLADHRIQIAAALELVIW 390
>gi|326381991|ref|ZP_08203684.1| putative transcriptional regulator, PucR family protein [Gordonia
neofelifaecis NRRL B-59395]
gi|326199417|gb|EGD56598.1| putative transcriptional regulator, PucR family protein [Gordonia
neofelifaecis NRRL B-59395]
Length=405
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 165/409 (41%), Positives = 229/409 (56%), Gaps = 21/409 (5%)
Query 3 LPKPTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPS----IAADPALATVVSRANR 58
L +P+ LIR +V L+ W+ +++ A A HP+ + D L V R N+
Sbjct 8 LREPSAAVAALIRAGVEVVLNAPEAWIADMNDA--AMHPAGMERVVVDLDLREVALRINQ 65
Query 59 SHLIHFATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEI 118
+L H+A +NL +PG V NL + + RDLVRRG DA ALD +R QN AW+ W +I
Sbjct 66 GNLNHWAQSNLERPGARVTVNLTEETVGFIRDLVRRGFDAGALDSFRTAQNTAWRLWMQI 125
Query 119 AFGLTTDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELIL 178
FGLT DP+ L ELL + S + FID T+ LA Q+ + EL D HA+ R +V LIL
Sbjct 126 CFGLTHDPEALRELLEVTSVSIATFIDDTVGELARQIDVARAELAGDTHAQRRAVVALIL 185
Query 179 DGAPISRQSAEAKLGYPLDRSHTAAIIWYD---DPDDNQNHLDHTARAFGRALGCPQPLI 235
+GAP++ AE +L Y ++ +A +I D PDD L+ A A G + L
Sbjct 186 EGAPVAPARAELQLRYSVEGPQSAMVISGDAGVAPDD----LEAACEAIMVASGVTRRLT 241
Query 236 AVASAATRWVWVSDAATLDTDR--IHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQ 293
+A A+ WVW L T+R + L PH RIA G+ G +GFRRSH +AL +
Sbjct 242 VLAGASELWVW------LPTERLTVESALADHPHVRIAAGSAGHGREGFRRSHFEALEGK 295
Query 294 RMLARLRSQQRLAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQ 353
++L RL S R A + D+ ++A +T + DFI TLGDL A L ++ + Q
Sbjct 296 QLLNRLGSATRFAAYDDLALLAAMTSDLTRLDDFIAHTLGDLALADRGLHDSMRAWFAAQ 355
Query 354 CNASRAAHVLHTHRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQWR 402
CNAS AA L+THRNT++R + AQ LLPRPLD + VA A+ AL+WR
Sbjct 356 CNASAAAAHLYTHRNTVVRHVARAQELLPRPLDANAVAVAAALEALRWR 404
>gi|54023238|ref|YP_117480.1| hypothetical protein nfa12710 [Nocardia farcinica IFM 10152]
gi|54014746|dbj|BAD56116.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=397
Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 147/396 (38%), Positives = 207/396 (53%), Gaps = 3/396 (0%)
Query 11 RELIRQAAKVALHPTPEWLDELDRATLA--AHPSIAADPALATVVSRANRSHLIHFATAN 68
REL R A+ L E L E++ ATL + +IA DP LA R L + T+N
Sbjct 2 RELFRDVAETMLARHTEILAEMEEATLRDPRYLAIAQDPVLAESSDRVGVFALKKWLTSN 61
Query 69 LRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFGLTTDPQE 128
+ PG VP + AR++V RGL + +R GQ V W+ W F + D E
Sbjct 62 IAAPGARVPPPDSEETRTYARNVVLRGLTTDEVTSWRAGQYVVWRWWLAECFRVARDLDE 121
Query 129 LHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGAPISRQSA 188
L L+ + S + +D +A LA Q+ +E + VEL+L GA I+ A
Sbjct 122 LESLVAVSACSLTTAVDDAIAALAQQVDDVREEFAGGAQLQRYATVELLLQGADIAPARA 181
Query 189 EAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATRWVWVS 248
EA+LGY L SH A++W D D + L+ + RA G L VA A +W+W+
Sbjct 182 EAQLGYALTGSHIGAVVWTDSERD-AHALEAVSEQLMRACGAASRLTVVAGTAAQWLWIP 240
Query 249 DAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQRLAFF 308
+ ++L P AR+A+G A GI+GFRR+H DA A QR+L+RLRS + +
Sbjct 241 AKTVPPAADLEEMLSRHPRARVALGRAASGINGFRRTHLDAAAAQRLLSRLRSNLAVIRY 300
Query 309 ADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAHVLHTHRN 368
D+ MI +++ + F+T LGD E+ASP L TVLTY+ E N S A L+THRN
Sbjct 301 EDVQMIDLMSADVSQLDQFVTDVLGDFEAASPVLHQTVLTYVEEGLNRSSTADRLYTHRN 360
Query 369 TLLRRLETAQRLLPRPLDHTIIQVAVAISALQWRGS 404
T+ RRL LLPRP ++VA A++ L+ RGS
Sbjct 361 TIDRRLARVDELLPRPFADRPVEVATALTVLRIRGS 396
>gi|169629742|ref|YP_001703391.1| hypothetical protein MAB_2657c [Mycobacterium abscessus ATCC
19977]
gi|169241709|emb|CAM62737.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=422
Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 144/397 (37%), Positives = 213/397 (54%), Gaps = 3/397 (0%)
Query 11 RELIRQAAKVALHPTPEWLDELDRATLA--AHPSIAADPALATVVSRANRSHLIHFATAN 68
R LIR+ A+ L + E +L A+L + +IA DP +A V +R S+L H+ T+N
Sbjct 27 RRLIRELAEKMLARSGEVAGDLTAASLEDPRYRTIADDPVIAEVDARLTVSNLKHWLTSN 86
Query 69 LRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFGLTTDPQE 128
+ +PG V G ARD+V RGL + +R Q V W+ W F +T D ++
Sbjct 87 ISEPGHRVRPATGSAMRTYARDVVLRGLTTDDIQSWRAVQRVGWKWWLAACFQVTDDKEQ 146
Query 129 LHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGAPISRQSA 188
L EL+ + S + F+D ++A LA ++ +EL + VEL+L GA I+ A
Sbjct 147 LCELIEVTSNSLTTFVDDSIAELAEHVRRVREELAGGSQLQRYATVELLLQGADIAPARA 206
Query 189 EAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATRWVWVS 248
EA+LGY L SH A++W D + L+ + RA G + L VA W+W+
Sbjct 207 EAQLGYALTGSHIGAVVWVDS-EKEIAALERASEQVMRACGADRRLTVVAGTVALWLWIP 265
Query 249 DAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQRLAFF 308
T + L R+A+G A G+ GFRR+H DA A QR+LARL S + +
Sbjct 266 AKTTPTVAVLMDSLGRRSGVRVALGRAATGMAGFRRTHMDAAAAQRLLARLGSPLSVVRY 325
Query 309 ADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAHVLHTHRN 368
D+H++ +L+ +P SA F+T LG+ +SASP L TVLTY+ E N + A L+THRN
Sbjct 326 EDVHLMDLLSADPASADQFVTDVLGEFQSASPVLHQTVLTYVEEALNRTSTAERLYTHRN 385
Query 369 TLLRRLETAQRLLPRPLDHTIIQVAVAISALQWRGSQ 405
T+ RRL LLP+P I+VA A++ L+ R +
Sbjct 386 TIDRRLARVDELLPKPFARNPIEVAAALTLLRVRAGR 422
>gi|240170335|ref|ZP_04748994.1| hypothetical protein MkanA1_13565 [Mycobacterium kansasii ATCC
12478]
Length=415
Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 140/375 (38%), Positives = 204/375 (55%), Gaps = 5/375 (1%)
Query 12 ELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSHLIHFATANLRK 71
EL+ + A + L+ + E+D A + P + AD A+A +S +NR++ + TA R+
Sbjct 12 ELVGEVADLMLNDIDHLVAEMDAAVVEIAPVMGADAAIAAEMSASNRANAVRLLTALARR 71
Query 72 PGQPVPANLGPDPLRMARDLVRRGLDASAL-DVYRVGQNVAWQRWTEIAFGLTTDPQELH 130
G+ PA++ P+ L + R +VRRG+D + YR GQNVAWQR+ A + EL
Sbjct 72 DGRGAPADVPPEALDVVRTVVRRGIDLDVIFQAYRRGQNVAWQRFMVYAAQVVAPGPELV 131
Query 131 ELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGAPISRQSAEA 190
LL + + ++D + + A Q E +EL A V LILDGAPI R+ A
Sbjct 132 ALLEVTSQLMFSYVDQVIGRVIADAQHEREELLGGAMARRTETVRLILDGAPIDRRRASE 191
Query 191 KLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATRWVWVSDA 250
+LGY LDR HTA ++W + + Q L+ A RA PL + AT W W+
Sbjct 192 RLGYELDRRHTALVLWAEPRGEIQGVLESAATLLARAARARPPLTLPSGTATLWAWLGTN 251
Query 251 ATLDTDRIHQVLDHA-PHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQRLAFFA 309
AT D + + A P R+AVG T GI GFRRSH AL QR+L +R+AF
Sbjct 252 ATPAMDALRDAIRSADPTVRVAVGPTQPGITGFRRSHAAALVIQRLLGGHPGGERIAFHR 311
Query 310 DIHMIAVLTENPDSAADFITSTLGDLESASP---QLLTTVLTYINEQCNASRAAHVLHTH 366
D+ + A+ +N D AA+F+ +TLG L + +P +L T+ +++E NA RA LHTH
Sbjct 312 DLEVTALAAQNQDQAAEFVATTLGPLAADTPGAARLRETLRVFLDEAENAPRAGIRLHTH 371
Query 367 RNTLLRRLETAQRLL 381
RNT+L+R+ A LL
Sbjct 372 RNTVLQRVARATELL 386
>gi|111020760|ref|YP_703732.1| hypothetical protein RHA1_ro03774 [Rhodococcus jostii RHA1]
gi|110820290|gb|ABG95574.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=402
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 135/366 (37%), Positives = 200/366 (55%), Gaps = 11/366 (3%)
Query 27 EWLDELDRATLAAHPSIAADPALATVVSRANRSHLIHFATANLRKPGQPVPANLGPDPLR 86
++++++D + P++ AD A+A +S +NR+++ T R+ G+ P ++ P+ L
Sbjct 14 QFVEDMDAEEVKLAPALGADAAIAAEMSASNRANVARLLTTLARRDGRAAPIDVPPEALD 73
Query 87 MARDLVRRGLDASALDV----YRVGQNVAWQRWTEIAFGLTTDPQELHELLTLPFRSASE 142
+ R +VRRG D LDV YR GQN+ WQ + A + +L ELL + E
Sbjct 74 VVRTVVRRGSD---LDVIFHAYRRGQNLVWQSFIAHAARIVPPGPQLVELLEAFSQHLFE 130
Query 143 FIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGAPISRQSAEAKLGYPLDRSHTA 202
++D + + A Q E +E+ A + LILDGAPI + A +LGY L R HTA
Sbjct 131 YVDHVIGRVIADAQREREEVLGGALARRVETIRLILDGAPIDSRRAGERLGYELARRHTA 190
Query 203 AIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATRWVWVSDAATLDTDRIHQVL 262
++W P + Q L+ A + RA G PL A +T W W + D + L
Sbjct 191 LVLWAQPPGEVQGALESAATSLARAAGARPPLTLPAGTSTLWAWFGTDSDPALDTLRDAL 250
Query 263 DHA-PHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQRLAFFADIHMIAVLTENP 321
A P+ R+AVG T GI GFRRSH AL QR+L+ S RLA + D+ + A+ +NP
Sbjct 251 TRAQPNVRVAVGPTQPGITGFRRSHDAALTIQRLLSGHPSGARLALYRDLEVTALAAQNP 310
Query 322 DSAADFITSTLGDLESASP---QLLTTVLTYINEQCNASRAAHVLHTHRNTLLRRLETAQ 378
D AADF+ +TLG L + +P +L T+ +++E NA RAA LHTHRNT+L+R+ A
Sbjct 311 DRAADFVATTLGPLAADTPSAARLRETLRVFLDEADNAPRAAVRLHTHRNTVLQRVARAT 370
Query 379 RLLPRP 384
LL P
Sbjct 371 ELLGHP 376
>gi|226359516|ref|YP_002777294.1| CdaR family transcriptional regulator [Rhodococcus opacus B4]
gi|226238001|dbj|BAH48349.1| putative CdaR family transcriptional regulator [Rhodococcus opacus
B4]
Length=409
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 142/401 (36%), Positives = 204/401 (51%), Gaps = 3/401 (0%)
Query 4 PKPTPRGRELIRQAAKVALHPTPEWLDELDRATLAA--HPSIAADPALATVVSRANRSHL 61
P P+ R LIR A+ + E +DEL A+LA + IAADP LA +R + ++L
Sbjct 7 PTPSESVRTLIRDIAESLIPRYHEVVDELVAASLADPRYHEIAADPVLAEADARLSVANL 66
Query 62 IHFATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFG 121
H+ T+N+ PG+ VP + + ARD+V R L + +R V W W F
Sbjct 67 KHWLTSNIADPGRRVPTHASQEIKIYARDVVLRELTTDDVASWRATHRVTWHWWLNECFA 126
Query 122 LTTDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGA 181
T D LHEL+ + S + F+D ++A LA +Q +EL + VEL+L G+
Sbjct 127 ATDDTDVLHELVEVSANSLTAFVDDSIAALADYIQAVREELAGGPQLQRYATVELLLHGS 186
Query 182 PISRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAA 241
I AEA+LGY L SH AIIW D +D L+ A RA G L VA A
Sbjct 187 NIEPSRAEAQLGYALTGSHVGAIIWADSEED-VGGLEPAAEQIMRACGAVSRLTVVAGTA 245
Query 242 TRWVWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRS 301
W+W+ + + + H R+A G + + GFRR+H DA A QR+LARL S
Sbjct 246 ALWLWMPSRLVPEVSDVADRIKHIKGIRVAFGRMSASVAGFRRTHMDAAAAQRLLARLNS 305
Query 302 QQRLAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAH 361
+ + + D+ ++ +++ +P AA ++ LG+ A P L TVLT + N S AA
Sbjct 306 RLSIVRYEDVQLVDLMSADPALAAQYVLDVLGEFADADPVLHQTVLTCVQAGFNRSSAAE 365
Query 362 VLHTHRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQWR 402
L+THRNT+ RRL LLP+PL V A++ L R
Sbjct 366 RLYTHRNTIDRRLARIDELLPKPLASDPAGVVAALTLLNIR 406
>gi|328886832|emb|CCA60071.1| hypothetical protein SVEN_6785 [Streptomyces venezuelae ATCC
10712]
Length=426
Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 133/403 (34%), Positives = 200/403 (50%), Gaps = 16/403 (3%)
Query 4 PKPTPRGRELIRQAAKVALHPTPEWLDELDRATLAAH--PSIAADPALATVVSRANRSHL 61
P P+ + IR + L T W+D R +L A P++ AD +L NRS L
Sbjct 21 PPPSREVADAIRSLCQRLLTETDAWVDAFARPSLVAQNDPALLADASLVEEDRALNRSDL 80
Query 62 IHFATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFG 121
+ + TAN+++PG+ V + P DLV RG+ +RV + W+RW +
Sbjct 81 VQWLTANIQQPGRRVEPYVSPRTTAYINDLVSRGIAPDFAGAWRVALGIGWRRWLKECVA 140
Query 122 LTTDPQELHELLTLPFRSASEF-IDATLA----GLAAQMQLEYDELTRDVHAEHRRIVEL 176
DP L +L + +S ++ +D+ A GLAA M + AE +++L
Sbjct 141 DFADPDLLVGVLDVTAQSMVQYALDSVAALRQAGLAAAMG--------NTDAEGIALIQL 192
Query 177 ILDGAPISRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIA 236
I GAP++ AE +L Y + R H ++W DDP LD A + G L+A
Sbjct 193 IASGAPMAEDLAEGRLRYRMARWHVGLVLWVDDPQ-RAGALDEAIAAVRSSAGGRSALVA 251
Query 237 VASAATRWVWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRML 296
ASA +RW+W+S D + + L R AVG RG++GFR SH+DALA Q ++
Sbjct 252 RASATSRWIWLSGETVPDLHHVAKDLAATDEVRAAVGRPGRGLEGFRSSHQDALAAQALV 311
Query 297 ARLRSQQRLAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNA 356
RL S++R +AD+ +I LT++ A F+ STLG L A L +LTY+ +
Sbjct 312 IRLGSERRFTAYADVELIDALTKDRAGARRFVISTLGPLVEADTALRQALLTYVQCGFST 371
Query 357 SRAAHVLHTHRNTLLRRLETAQRLLPRPLDHTIIQVAVAISAL 399
+RAA L+ HRNT+ RR+ A L ++ VA A+ L
Sbjct 372 TRAAADLYAHRNTVERRVSRANELSAVKVEDNPTHVAAALLVL 414
>gi|304319834|ref|YP_003853477.1| hypothetical protein PB2503_01282 [Parvularcula bermudensis HTCC2503]
gi|303298737|gb|ADM08336.1| hypothetical protein PB2503_01282 [Parvularcula bermudensis HTCC2503]
Length=403
Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 125/391 (32%), Positives = 194/391 (50%), Gaps = 7/391 (1%)
Query 13 LIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSHLIHFATANLRKP 72
L+R+AA A + L +D A L A DP L + ANR ++ ++ + P
Sbjct 11 LMREAATRARLNPDKSLKMIDDAVLNAIDQ-TQDPLLVAQIRLANRLNMDYWLNRAFQAP 69
Query 73 GQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFGLTTDPQELHEL 132
+ NL P+ LR + R GL +AL+ +R GQN A+ W E+ F LT DP+EL +
Sbjct 70 EKIPEPNLSPEILRSVHENARVGLGETALEAFRAGQNAAFMIWMEVVFELTDDPEELKAV 129
Query 133 LTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGAPISRQSAEAKL 192
L RS S F++ T + + ++ + A+ R +VE +L+G A +L
Sbjct 130 LDHSLRSISSFVEETARAIRIENAKGLEDAAQGSPAQRRVLVERLLEGETFDAPLAARRL 189
Query 193 GYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATR-WVWVSDAA 251
GY LD+ H A I W D + + + L A L + ++ + +R W+W +D
Sbjct 190 GYRLDQRHQAVIFWIDRMEGDPDILADFATRLT-TLTPGKSILRIDEDKSRLWLWFTD-- 246
Query 252 TLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQRLAFFADI 311
+D+ + + + +A+G G++GFRRSH DA +R++A +R+A + D
Sbjct 247 KIDSKMLASLRPETVY--VAIGPVLSGVEGFRRSHLDARTAERLIAEGPGDRRIATYEDT 304
Query 312 HMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAHVLHTHRNTLL 371
+ A++ N F+ LG L +A P ++ Y N SR A L HRNTL+
Sbjct 305 RLAALMGTNSALRDQFLEEVLGPLSTAPPHFAQSLRAYFLHGENVSRTAEALAIHRNTLM 364
Query 372 RRLETAQRLLPRPLDHTIIQVAVAISALQWR 402
R LE A+ LLPRPL I+VA A+ AL WR
Sbjct 365 RHLEGAEDLLPRPLSEARIEVAAALEALHWR 395
>gi|297197571|ref|ZP_06914968.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
gi|197716669|gb|EDY60703.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
Length=409
Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 110/365 (31%), Positives = 178/365 (49%), Gaps = 5/365 (1%)
Query 43 IAADPALATVVSRANRSHLIHFATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALD 102
+DP+++ + A R++ H+A + P + V L + ++RD R G + +
Sbjct 46 FGSDPSISEAIGEATRAYSHHWARSMYEDPWRDVEPLLTSQIVNISRDGYRWGEEDTFRA 105
Query 103 VYRVGQNVAWQRWTEIAFGLTTDPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDEL 162
Q W IAF L + L L RS S ++D T+ + ++ E L
Sbjct 106 SNYAAQQAMWSILMRIAFSLCDETAVLQPALDRASRSLSLWVDRTVTAVIDILEQERAAL 165
Query 163 TRDVHAEHRRIVELILDGAPISRQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTAR 222
+ D H +V LIL G P+ + LGYPL H I+W ++ L A
Sbjct 166 SGDEHVRRLELVNLILGGTPVPVTGVDQSLGYPLSARHLGVILWAPPQFADRAALVQVAS 225
Query 223 AFGRALGCPQPLIAVASAATRWVWVSDAATLDTDRIHQVLDHAPH--ARIAVGTTARGID 280
A R L+ ASA++ W+W++ + + + L APH R+A+G+ G+D
Sbjct 226 ALSRIAESRSRLLVHASASSLWLWLTPGIPVSAEALETAL--APHRDVRLAIGSLDEGVD 283
Query 281 GFRRSHRDALATQRMLARLRSQQRLAFFADIHMIAVLTENPDSAADFITSTLGDLESASP 340
GFRR+H A+ TQR L + + R+AF+ D+ + +L + +FI +TLG L +
Sbjct 284 GFRRTHDRAVETQR-LVQSNNAHRVAFYDDVAAVILLARDEARLREFIYATLGPLATGPQ 342
Query 341 QLLTTVLTYINEQCNASRAAHVLHTHRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQ 400
L T+ +I+++ NASR A +L THRNT+L+R+ A+ LP LD V +A+ A+
Sbjct 343 DLRDTLRMFIHQRYNASRTAELLFTHRNTILQRIRRAEERLPVTLDRHGTNVGIALDAMH 402
Query 401 WRGSQ 405
W Q
Sbjct 403 WLNLQ 407
Lambda K H
0.320 0.133 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 894358852716
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40