BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2372c Length=262 Score E Sequences producing significant alignments: (Bits) Value gi|15609509|ref|NP_216888.1| 16S ribosomal RNA methyltransferase... 503 9e-141 gi|339295271|gb|AEJ47382.1| 16S ribosomal RNA methyltransferase ... 501 3e-140 gi|289575065|ref|ZP_06455292.1| conserved hypothetical protein [... 501 5e-140 gi|340627383|ref|YP_004745835.1| hypothetical protein MCAN_24041... 500 6e-140 gi|308375866|ref|ZP_07445358.2| hypothetical protein TMGG_00932 ... 498 5e-139 gi|289750971|ref|ZP_06510349.1| conserved hypothetical protein [... 450 1e-124 gi|183983662|ref|YP_001851953.1| hypothetical protein MMAR_3682 ... 365 4e-99 gi|118618898|ref|YP_907230.1| 16S ribosomal RNA methyltransferas... 364 6e-99 gi|254819390|ref|ZP_05224391.1| 16S ribosomal RNA methyltransfer... 361 6e-98 gi|296170596|ref|ZP_06852179.1| RsmE family RNA methyltransferas... 360 1e-97 gi|254774749|ref|ZP_05216265.1| 16S ribosomal RNA methyltransfer... 357 1e-96 gi|240169914|ref|ZP_04748573.1| 16S rRNA m3U1498 methyltransfera... 357 1e-96 gi|118466945|ref|YP_881243.1| 16S ribosomal RNA methyltransferas... 354 8e-96 gi|41408259|ref|NP_961095.1| hypothetical protein MAP2161c [Myco... 351 7e-95 gi|342857498|ref|ZP_08714154.1| 16S ribosomal RNA methyltransfer... 348 5e-94 gi|15827256|ref|NP_301519.1| 16S ribosomal RNA methyltransferase... 323 1e-86 gi|108800424|ref|YP_640621.1| 16S ribosomal RNA methyltransferas... 317 1e-84 gi|126436047|ref|YP_001071738.1| 16S ribosomal RNA methyltransfe... 316 3e-84 gi|118468490|ref|YP_888775.1| 16S ribosomal RNA methyltransferas... 298 6e-79 gi|120404793|ref|YP_954622.1| 16S ribosomal RNA methyltransferas... 293 1e-77 gi|145223290|ref|YP_001133968.1| 16S ribosomal RNA methyltransfe... 275 5e-72 gi|333990191|ref|YP_004522805.1| 16S ribosomal RNA methyltransfe... 254 7e-66 gi|226360380|ref|YP_002778158.1| 16S ribosomal RNA methyltransfe... 251 5e-65 gi|111018255|ref|YP_701227.1| 16S ribosomal RNA methyltransferas... 245 6e-63 gi|229493162|ref|ZP_04386954.1| ribosomal RNA small subunit meth... 234 8e-60 gi|333918866|ref|YP_004492447.1| hypothetical protein AS9A_1195 ... 233 1e-59 gi|296140458|ref|YP_003647701.1| hypothetical protein Tpau_2764 ... 233 3e-59 gi|331698261|ref|YP_004334500.1| ribosomal RNA small subunit met... 232 3e-59 gi|256375381|ref|YP_003099041.1| hypothetical protein Amir_1243 ... 232 3e-59 gi|226307226|ref|YP_002767186.1| hypothetical protein RER_37390 ... 232 5e-59 gi|325677133|ref|ZP_08156802.1| 16S rRNA m3U1498 methyltransfera... 226 2e-57 gi|312140293|ref|YP_004007629.1| RNA methyltransferase [Rhodococ... 225 4e-57 gi|54023394|ref|YP_117636.1| 16S ribosomal RNA methyltransferase... 224 8e-57 gi|169628757|ref|YP_001702406.1| hypothetical protein MAB_1667 [... 223 3e-56 gi|262203051|ref|YP_003274259.1| hypothetical protein Gbro_3161 ... 216 2e-54 gi|258651801|ref|YP_003200957.1| hypothetical protein Namu_1573 ... 213 2e-53 gi|227833632|ref|YP_002835339.1| hypothetical protein cauri_1808... 209 3e-52 gi|319947872|ref|ZP_08022059.1| 16S ribosomal RNA methyltransfer... 206 3e-51 gi|296269135|ref|YP_003651767.1| hypothetical protein Tbis_1152 ... 199 4e-49 gi|302528840|ref|ZP_07281182.1| conserved hypothetical protein [... 196 2e-48 gi|343926582|ref|ZP_08766084.1| hypothetical protein GOALK_063_0... 196 3e-48 gi|300858951|ref|YP_003783934.1| hypothetical protein cpfrc_0153... 196 3e-48 gi|255323732|ref|ZP_05364860.1| ribosomal RNA small subunit meth... 194 8e-48 gi|269127458|ref|YP_003300828.1| hypothetical protein Tcur_3251 ... 192 3e-47 gi|311741359|ref|ZP_07715183.1| RsmE family RNA methyltransferas... 192 4e-47 gi|145296244|ref|YP_001139065.1| 16S ribosomal RNA methyltransfe... 189 3e-46 gi|334697346|gb|AEG82143.1| hypothetical protein CULC809_01611 [... 189 5e-46 gi|344044712|gb|EGV40388.1| 16S ribosomal RNA methyltransferase ... 188 5e-46 gi|19553487|ref|NP_601489.1| 16S ribosomal RNA methyltransferase... 188 6e-46 gi|237785905|ref|YP_002906610.1| hypothetical protein ckrop_1323... 188 7e-46 >gi|15609509|ref|NP_216888.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium tuberculosis H37Rv] gi|15841884|ref|NP_336921.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium tuberculosis CDC1551] gi|31793549|ref|NP_856042.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium bovis AF2122/97] 69 more sequence titles Length=262 Score = 503 bits (1296), Expect = 9e-141, Method: Compositional matrix adjust. Identities = 262/262 (100%), Positives = 262/262 (100%), Gaps = 0/262 (0%) Query 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG 60 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG Sbjct 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG 60 Query 61 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG 120 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG Sbjct 61 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG 120 Query 121 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT 180 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT Sbjct 121 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT 180 Query 181 ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAV 240 ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAV Sbjct 181 ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAV 240 Query 241 GVLTSRWDASASDCEYCDVTRR 262 GVLTSRWDASASDCEYCDVTRR Sbjct 241 GVLTSRWDASASDCEYCDVTRR 262 >gi|339295271|gb|AEJ47382.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium tuberculosis CCDC5079] Length=262 Score = 501 bits (1291), Expect = 3e-140, Method: Compositional matrix adjust. Identities = 261/262 (99%), Positives = 261/262 (99%), Gaps = 0/262 (0%) Query 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG 60 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG Sbjct 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG 60 Query 61 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG 120 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG Sbjct 61 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG 120 Query 121 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT 180 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT Sbjct 121 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT 180 Query 181 ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAV 240 ERIVDIAAA AGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAV Sbjct 181 ERIVDIAAAHAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAV 240 Query 241 GVLTSRWDASASDCEYCDVTRR 262 GVLTSRWDASASDCEYCDVTRR Sbjct 241 GVLTSRWDASASDCEYCDVTRR 262 >gi|289575065|ref|ZP_06455292.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289539496|gb|EFD44074.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] Length=262 Score = 501 bits (1290), Expect = 5e-140, Method: Compositional matrix adjust. Identities = 261/262 (99%), Positives = 261/262 (99%), Gaps = 0/262 (0%) Query 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG 60 MVAMLFYVD LPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG Sbjct 1 MVAMLFYVDILPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG 60 Query 61 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG 120 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG Sbjct 61 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG 120 Query 121 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT 180 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT Sbjct 121 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT 180 Query 181 ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAV 240 ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAV Sbjct 181 ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAV 240 Query 241 GVLTSRWDASASDCEYCDVTRR 262 GVLTSRWDASASDCEYCDVTRR Sbjct 241 GVLTSRWDASASDCEYCDVTRR 262 >gi|340627383|ref|YP_004745835.1| hypothetical protein MCAN_24041 [Mycobacterium canettii CIPT 140010059] gi|340005573|emb|CCC44735.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059] Length=262 Score = 500 bits (1288), Expect = 6e-140, Method: Compositional matrix adjust. Identities = 261/262 (99%), Positives = 261/262 (99%), Gaps = 0/262 (0%) Query 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG 60 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVG LARCVVEQAGRG Sbjct 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGGLARCVVEQAGRG 60 Query 61 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG 120 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG Sbjct 61 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG 120 Query 121 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT 180 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT Sbjct 121 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT 180 Query 181 ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAV 240 ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAV Sbjct 181 ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAV 240 Query 241 GVLTSRWDASASDCEYCDVTRR 262 GVLTSRWDASASDCEYCDVTRR Sbjct 241 GVLTSRWDASASDCEYCDVTRR 262 >gi|308375866|ref|ZP_07445358.2| hypothetical protein TMGG_00932 [Mycobacterium tuberculosis SUMu007] gi|308377996|ref|ZP_07481181.2| hypothetical protein TMIG_01048 [Mycobacterium tuberculosis SUMu009] gi|308344953|gb|EFP33804.1| hypothetical protein TMGG_00932 [Mycobacterium tuberculosis SUMu007] gi|308353884|gb|EFP42735.1| hypothetical protein TMIG_01048 [Mycobacterium tuberculosis SUMu009] Length=259 Score = 498 bits (1281), Expect = 5e-139, Method: Compositional matrix adjust. Identities = 259/259 (100%), Positives = 259/259 (100%), Gaps = 0/259 (0%) Query 4 MLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGGLR 63 MLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGGLR Sbjct 1 MLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGGLR 60 Query 64 ARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARV 123 ARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARV Sbjct 61 ARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARV 120 Query 124 DKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEATERI 183 DKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEATERI Sbjct 121 DKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEATERI 180 Query 184 VDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAVGVL 243 VDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAVGVL Sbjct 181 VDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAVGVL 240 Query 244 TSRWDASASDCEYCDVTRR 262 TSRWDASASDCEYCDVTRR Sbjct 241 TSRWDASASDCEYCDVTRR 259 >gi|289750971|ref|ZP_06510349.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289691558|gb|EFD58987.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] Length=236 Score = 450 bits (1157), Expect = 1e-124, Method: Compositional matrix adjust. Identities = 236/236 (100%), Positives = 236/236 (100%), Gaps = 0/236 (0%) Query 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG 60 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG Sbjct 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG 60 Query 61 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG 120 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG Sbjct 61 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG 120 Query 121 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT 180 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT Sbjct 121 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT 180 Query 181 ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVA 236 ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVA Sbjct 181 ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVA 236 >gi|183983662|ref|YP_001851953.1| hypothetical protein MMAR_3682 [Mycobacterium marinum M] gi|183176988|gb|ACC42098.1| conserved hypothetical protein [Mycobacterium marinum M] Length=253 Score = 365 bits (937), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 199/252 (79%), Positives = 219/252 (87%), Gaps = 0/252 (0%) Query 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG 60 MVA LFYVDT+P+ G +A +DGDEGFHAATVRRIRPGEQLVLGDG G LARCVVE A R Sbjct 1 MVATLFYVDTVPEAGELAALDGDEGFHAATVRRIRPGEQLVLGDGAGELARCVVEHAARD 60 Query 61 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG 120 GL ARVL+RWSV PVRP VTVVQALPKSERSELA+ELATEAGADAFLAWQAARCVANW G Sbjct 61 GLTARVLQRWSVAPVRPAVTVVQALPKSERSELAVELATEAGADAFLAWQAARCVANWGG 120 Query 121 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT 180 AR DKGLRRWR+ RSAARQSRRA IPPV+GVLST L++R+ E AGA VL LHE AT Sbjct 121 ARADKGLRRWRSAARSAARQSRRAHIPPVEGVLSTAALIRRITAEAQAGAMVLALHESAT 180 Query 181 ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAV 240 +R+VD A AQA SL+LVVGPEGGIAP+E+ AL AGAV+VRLGPTVLRTSTAAAVALGA+ Sbjct 181 DRLVDTAVAQAKSLVLVVGPEGGIAPEEMDALAGAGAVSVRLGPTVLRTSTAAAVALGAL 240 Query 241 GVLTSRWDASAS 252 GVLT RWD++AS Sbjct 241 GVLTERWDSAAS 252 >gi|118618898|ref|YP_907230.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium ulcerans Agy99] gi|118571008|gb|ABL05759.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length=253 Score = 364 bits (935), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 199/252 (79%), Positives = 220/252 (88%), Gaps = 0/252 (0%) Query 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG 60 MVA LFYVDT+P+ G +A +DGDEGFHAATVRRIRPGEQLVLGDG G LARCVVE A R Sbjct 1 MVATLFYVDTVPEAGELAALDGDEGFHAATVRRIRPGEQLVLGDGAGELARCVVEHAARD 60 Query 61 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG 120 GL ARVL+RWSV PVRP VTVVQALPKSERSELA+ELATEAGADAFLAWQAARCVANW G Sbjct 61 GLTARVLQRWSVAPVRPAVTVVQALPKSERSELAVELATEAGADAFLAWQAARCVANWGG 120 Query 121 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT 180 AR DKGLRRWR+ VRSAARQSRRA IPPV+GVLST L++R+ E AGA VL LHE AT Sbjct 121 ARADKGLRRWRSAVRSAARQSRRAHIPPVEGVLSTAALIRRITAEAQAGAMVLALHESAT 180 Query 181 ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAV 240 +R+V+ A AQA SL+LVVGPEGGIAP+E+ AL AGAV+VRLGPTVLRTSTAAAVALGA+ Sbjct 181 DRLVETAVAQAKSLVLVVGPEGGIAPEEMDALAGAGAVSVRLGPTVLRTSTAAAVALGAL 240 Query 241 GVLTSRWDASAS 252 GVLT RWD++AS Sbjct 241 GVLTGRWDSAAS 252 >gi|254819390|ref|ZP_05224391.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium intracellulare ATCC 13950] Length=253 Score = 361 bits (926), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 200/252 (80%), Positives = 215/252 (86%), Gaps = 0/252 (0%) Query 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG 60 MVA LFY D LP+TGA+AV+ GDEGFHAA+VRRIRPGEQLVLGDG G LARC VE AGR Sbjct 1 MVATLFYADALPETGALAVLGGDEGFHAASVRRIRPGEQLVLGDGAGGLARCEVEHAGRD 60 Query 61 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG 120 GLRARVL+RWSV P PPVTVVQALPKSERSELAIELATEAGAD FLAW+AARCVANW G Sbjct 61 GLRARVLKRWSVAPGTPPVTVVQALPKSERSELAIELATEAGADGFLAWRAARCVANWQG 120 Query 121 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT 180 ARV+KGLRRWRAV RSAARQSRRA IPPVDGVLSTP L R+R+EVA GA VL LHE AT Sbjct 121 ARVEKGLRRWRAVARSAARQSRRAHIPPVDGVLSTPALTSRIRDEVAGGATVLALHESAT 180 Query 181 ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAV 240 ER+ A A S+ LVVGPEGGIA DE+AAL+DAGA AVRLGP VLRTSTAAAVALGA+ Sbjct 181 ERLAHADLAGATSVFLVVGPEGGIADDEMAALSDAGATAVRLGPQVLRTSTAAAVALGAL 240 Query 241 GVLTSRWDASAS 252 GVLT RWD +S Sbjct 241 GVLTPRWDHPSS 252 >gi|296170596|ref|ZP_06852179.1| RsmE family RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894760|gb|EFG74486.1| RsmE family RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] Length=240 Score = 360 bits (924), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 191/240 (80%), Positives = 205/240 (86%), Gaps = 0/240 (0%) Query 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG 60 MVA LFYVD LPD GA+A VDGDEGFHAATVRRIRPGE+LVLGDG G LARC VE AGR Sbjct 1 MVATLFYVDALPDIGALAAVDGDEGFHAATVRRIRPGERLVLGDGAGGLARCEVEHAGRD 60 Query 61 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG 120 GLRARVL RW+V P RPPVTVVQALPKSERSELA+ELATEAGADAFLAWQ+ARCVA+W G Sbjct 61 GLRARVLERWTVAPARPPVTVVQALPKSERSELAVELATEAGADAFLAWQSARCVASWQG 120 Query 121 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT 180 RVDKGLRRWRAV RSAARQSRRA IP VDGVLST L RVR AAG+ VL LHE A+ Sbjct 121 PRVDKGLRRWRAVARSAARQSRRAHIPAVDGVLSTAELTGRVRAASAAGSVVLALHESAS 180 Query 181 ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAV 240 +R+ D AQA S+ LVVGPEGGIAP+E+AALTDAGAVAV LGP VLRTSTAAAVALGA+ Sbjct 181 DRLADSHVAQADSVWLVVGPEGGIAPEEIAALTDAGAVAVGLGPQVLRTSTAAAVALGAL 240 >gi|254774749|ref|ZP_05216265.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium avium subsp. avium ATCC 25291] Length=253 Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 199/252 (79%), Positives = 213/252 (85%), Gaps = 0/252 (0%) Query 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG 60 MVA LFY D LP+TGA+AV+ GDEGFHAA+VRRIRPGEQLVLGDG G LA C VE AGR Sbjct 1 MVATLFYADALPETGALAVLGGDEGFHAASVRRIRPGEQLVLGDGAGGLAHCEVEHAGRD 60 Query 61 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG 120 GLRARVL+RWSV P PPVTVVQALPKS RSELAIELATEAGAD FLAWQAARCVANW G Sbjct 61 GLRARVLKRWSVAPGTPPVTVVQALPKSARSELAIELATEAGADGFLAWQAARCVANWHG 120 Query 121 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT 180 ARV+KGLRRWRAV RSAARQSRRA IP VDGVLSTP L R+R+EVA GA VL LHE AT Sbjct 121 ARVEKGLRRWRAVARSAARQSRRAHIPLVDGVLSTPALTSRIRDEVAGGATVLALHESAT 180 Query 181 ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAV 240 ER+ D A A S++LVVGPEGGIA DE+AAL+DAGA AVRLGP VLRTSTAAAVALGA+ Sbjct 181 ERLADADLAGATSVLLVVGPEGGIADDEMAALSDAGATAVRLGPQVLRTSTAAAVALGAL 240 Query 241 GVLTSRWDASAS 252 GVLT RWD S Sbjct 241 GVLTPRWDHPPS 252 >gi|240169914|ref|ZP_04748573.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium kansasii ATCC 12478] Length=248 Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 199/248 (81%), Positives = 216/248 (88%), Gaps = 0/248 (0%) Query 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG 60 MVA LFYVD LPD G +AVVDGDEGFHAATVRRIRPGE++VLGDG G LARC VE+AGR Sbjct 1 MVATLFYVDALPDPGTLAVVDGDEGFHAATVRRIRPGEEVVLGDGEGDLARCRVERAGRD 60 Query 61 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG 120 GL ARVL RWS P RP VTVVQALPKSERSELAIELATEAGADAF+AWQAARCVA+W+G Sbjct 61 GLAARVLERWSTVPARPAVTVVQALPKSERSELAIELATEAGADAFVAWQAARCVASWNG 120 Query 121 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT 180 +RVDKGLRRWR+V RSAARQSRRA IPPVDG LST L RVR+EVA GA VL LHE AT Sbjct 121 SRVDKGLRRWRSVARSAARQSRRAYIPPVDGPLSTAALTVRVRDEVARGAMVLALHESAT 180 Query 181 ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAV 240 R+ ++A AQA SLMLV+GPEGGIAP+E+ ALT AGAVAVRLGPTVLRTSTAAAVALGA+ Sbjct 181 ARLAEVALAQANSLMLVIGPEGGIAPEEIDALTGAGAVAVRLGPTVLRTSTAAAVALGAL 240 Query 241 GVLTSRWD 248 GVLT RWD Sbjct 241 GVLTPRWD 248 >gi|118466945|ref|YP_881243.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium avium 104] gi|118168232|gb|ABK69129.1| conserved hypothetical protein [Mycobacterium avium 104] gi|336458180|gb|EGO37163.1| RNA methyltransferase, RsmE family [Mycobacterium avium subsp. paratuberculosis S397] Length=253 Score = 354 bits (908), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 195/252 (78%), Positives = 213/252 (85%), Gaps = 0/252 (0%) Query 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG 60 MVA LFY D LPD G++AV+ GDEGFHAATVRRIRPGE+LVLGDG G LARC VE AGR Sbjct 1 MVATLFYTDELPDAGSLAVLGGDEGFHAATVRRIRPGERLVLGDGAGGLARCEVEHAGRD 60 Query 61 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG 120 GLRARVL RW+V P PPVTVVQALPKSERSELA+ELATEAGAD FLAWQAARCVANW G Sbjct 61 GLRARVLERWTVAPPNPPVTVVQALPKSERSELAVELATEAGADGFLAWQAARCVANWHG 120 Query 121 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT 180 RVDKGLRRWRAV ++AARQSRR IP VDGVLST L R+R+EVAAGA VL LHE AT Sbjct 121 PRVDKGLRRWRAVAKAAARQSRRPHIPTVDGVLSTASLTSRIRDEVAAGAVVLALHESAT 180 Query 181 ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAV 240 +R+ D+ AQA SL LV+GPEGGIA DELAAL AGA++VRLGP VLRTSTAAAVALGA+ Sbjct 181 DRLTDVPVAQAKSLFLVIGPEGGIADDELAALRQAGALSVRLGPQVLRTSTAAAVALGAL 240 Query 241 GVLTSRWDASAS 252 GVLT RWD +AS Sbjct 241 GVLTPRWDDAAS 252 >gi|41408259|ref|NP_961095.1| hypothetical protein MAP2161c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396614|gb|AAS04478.1| hypothetical protein MAP_2161c [Mycobacterium avium subsp. paratuberculosis K-10] Length=253 Score = 351 bits (900), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 194/252 (77%), Positives = 212/252 (85%), Gaps = 0/252 (0%) Query 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG 60 MVA LFY D LPD G++AV+ GDEGFHAATVRRIRPGE+LVLGD G LARC VE AGR Sbjct 1 MVATLFYTDELPDAGSLAVLGGDEGFHAATVRRIRPGERLVLGDRAGGLARCEVEHAGRD 60 Query 61 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG 120 GLRARVL RW+V P PPVTVVQALPKSERSELA+ELATEAGAD FLAWQAARCVANW G Sbjct 61 GLRARVLERWTVAPPNPPVTVVQALPKSERSELAVELATEAGADGFLAWQAARCVANWHG 120 Query 121 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT 180 RVDKGLRRWRAV ++AARQSRR IP VDGVLST L R+R+EVAAGA VL LHE AT Sbjct 121 PRVDKGLRRWRAVAKAAARQSRRPHIPTVDGVLSTASLTSRIRDEVAAGAVVLALHESAT 180 Query 181 ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAV 240 +R+ D+ AQA SL LV+GPEGGIA DELAAL AGA++VRLGP VLRTSTAAAVALGA+ Sbjct 181 DRLTDVPVAQAKSLFLVIGPEGGIADDELAALRQAGALSVRLGPQVLRTSTAAAVALGAL 240 Query 241 GVLTSRWDASAS 252 GVLT RWD +AS Sbjct 241 GVLTPRWDDAAS 252 >gi|342857498|ref|ZP_08714154.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium colombiense CECT 3035] gi|342134831|gb|EGT87997.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium colombiense CECT 3035] Length=282 Score = 348 bits (893), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 200/248 (81%), Positives = 216/248 (88%), Gaps = 0/248 (0%) Query 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG 60 MVA LFY+D LP G++AV+ GDEGFHAATVRR+RPGEQLVLGDG G LA C VE AGR Sbjct 1 MVATLFYLDDLPQPGSLAVLGGDEGFHAATVRRLRPGEQLVLGDGAGALAHCEVEHAGRD 60 Query 61 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG 120 GLRARVL+RW+VPP P VTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANW G Sbjct 61 GLRARVLQRWNVPPGSPAVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWQG 120 Query 121 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT 180 RVDKGLRRWRAVVRSAARQSRRA IPPVDGVLST L +R+R+EVAAGA L LHE AT Sbjct 121 NRVDKGLRRWRAVVRSAARQSRRAHIPPVDGVLSTAELTRRIRDEVAAGATALALHESAT 180 Query 181 ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAV 240 +R+ DI AQA SL+LVVGPEGGIA DE+AAL+DAGA AVRLGP VLRTSTAAAVALGA+ Sbjct 181 DRLADIGLAQAKSLLLVVGPEGGIADDEMAALSDAGAAAVRLGPQVLRTSTAAAVALGAL 240 Query 241 GVLTSRWD 248 GVLT RWD Sbjct 241 GVLTPRWD 248 >gi|15827256|ref|NP_301519.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium leprae TN] gi|221229734|ref|YP_002503150.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium leprae Br4923] gi|13092805|emb|CAC30134.1| conserved hypothetical protein [Mycobacterium leprae] gi|219932841|emb|CAR70719.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length=257 Score = 323 bits (829), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 197/255 (78%), Positives = 222/255 (88%), Gaps = 4/255 (1%) Query 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG 60 MV+ LFYVD LPDTG VAVV GDEGFHA TVRRIRPGE+LVLGDGVG LA C+VE+AGR Sbjct 1 MVSTLFYVDALPDTGTVAVVGGDEGFHAVTVRRIRPGEELVLGDGVGGLAHCLVERAGRD 60 Query 61 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG 120 GL ARVL W+V P PP TVVQALPK+ERSELAIE+ATEAGADAF+AWQ+ RCVA+W G Sbjct 61 GLYARVLGHWTVAPGLPPATVVQALPKAERSELAIEMATEAGADAFVAWQSDRCVASWYG 120 Query 121 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT 180 RVDKGLRRWRAV R+AARQSRRA IP VDGVL+T L+QR+R+EVAAGA VL LHE AT Sbjct 121 VRVDKGLRRWRAVARAAARQSRRAHIPSVDGVLTTAALLQRIRDEVAAGATVLALHESAT 180 Query 181 ERI----VDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVA 236 +R+ DI+ AQA SL+L+VGPEGGIAPDE+AALT+AGAVAVRLGPTVLR+STAAAVA Sbjct 181 DRLSDVFADISVAQANSLVLLVGPEGGIAPDEIAALTEAGAVAVRLGPTVLRSSTAAAVA 240 Query 237 LGAVGVLTSRWDASA 251 LGA+GVLTSRWDAS+ Sbjct 241 LGALGVLTSRWDASS 255 >gi|108800424|ref|YP_640621.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium sp. MCS] gi|119869553|ref|YP_939505.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium sp. KMS] gi|108770843|gb|ABG09565.1| protein of unknown function DUF558 [Mycobacterium sp. MCS] gi|119695642|gb|ABL92715.1| protein of unknown function DUF558 [Mycobacterium sp. KMS] Length=248 Score = 317 bits (812), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 175/244 (72%), Positives = 194/244 (80%), Gaps = 1/244 (0%) Query 5 LFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGGLRA 64 LFYVD LP G +AVVDGD GFHA VRR R GE L LGDG G +A CVVE G+G L A Sbjct 4 LFYVDALPGLGELAVVDGDAGFHATNVRRTRAGEHLDLGDGDGTVAHCVVEDVGKGRLTA 63 Query 65 RVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGA-RV 123 RVL R +V P P VTVVQA+PKS+R+ELA+E ATEAGADA LAWQAARCVA WDGA +V Sbjct 64 RVLERRTVTPPAPAVTVVQAIPKSDRAELAVESATEAGADAVLAWQAARCVARWDGAGKV 123 Query 124 DKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEATERI 183 DKGLRRWRAVVRSAARQSRRA IPPVDGV++T LV+RV EVA GA VLVLHE AT + Sbjct 124 DKGLRRWRAVVRSAARQSRRAHIPPVDGVVTTAELVRRVTAEVADGATVLVLHESATGPL 183 Query 184 VDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAVGVL 243 + QA ++ L+VGPEGGIA +EL ALT AGAVAVRLGPTVLRTSTAAAV LGA+GVL Sbjct 184 TGVDLTQARAVTLIVGPEGGIADEELDALTAAGAVAVRLGPTVLRTSTAAAVGLGALGVL 243 Query 244 TSRW 247 T RW Sbjct 244 TPRW 247 >gi|126436047|ref|YP_001071738.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium sp. JLS] gi|126235847|gb|ABN99247.1| protein of unknown function DUF558 [Mycobacterium sp. JLS] Length=248 Score = 316 bits (809), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 175/244 (72%), Positives = 193/244 (80%), Gaps = 1/244 (0%) Query 5 LFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGGLRA 64 LFYVD LP G +AVVDGD GFHA VRR R GE L LGDG G +A CVVE G+G L A Sbjct 4 LFYVDALPGLGELAVVDGDAGFHATNVRRTRAGEHLDLGDGDGTVAHCVVEDVGKGRLTA 63 Query 65 RVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGA-RV 123 RVL R +V P P VTVVQA+PKS+R+ELA+E ATEAGADA LAWQAARCVA WDGA +V Sbjct 64 RVLERRTVTPPAPAVTVVQAIPKSDRAELAVESATEAGADAVLAWQAARCVARWDGAAKV 123 Query 124 DKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEATERI 183 DKGLRRWRAVVRSAARQSRRA IPPVDGV++T LV RV EVA GA VLVLHE AT + Sbjct 124 DKGLRRWRAVVRSAARQSRRAHIPPVDGVVTTAELVCRVTAEVADGATVLVLHESATGPL 183 Query 184 VDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAVGVL 243 + QA ++ L+VGPEGGIA +EL ALT AGAVAVRLGPTVLRTSTAAAV LGA+GVL Sbjct 184 TGVDLTQARAVTLIVGPEGGIADEELDALTAAGAVAVRLGPTVLRTSTAAAVGLGALGVL 243 Query 244 TSRW 247 T RW Sbjct 244 TPRW 247 >gi|118468490|ref|YP_888775.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium smegmatis str. MC2 155] gi|118169777|gb|ABK70673.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=246 Score = 298 bits (763), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 167/248 (68%), Positives = 194/248 (79%), Gaps = 3/248 (1%) Query 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG 60 M A LFYVD LP G +AVVDGDEG HAA VRRIR GE++ L DG G LA CVVE +G Sbjct 1 MSAALFYVDVLPGAGELAVVDGDEGHHAANVRRIRVGERIDLSDGAGTLAHCVVENTAKG 60 Query 61 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG 120 + AR+ + ++PP RP VTVVQALPKS+RSELAIELATEAGADAF+AWQ+ARCVA WDG Sbjct 61 SVSARITEQVTLPPARPSVTVVQALPKSDRSELAIELATEAGADAFVAWQSARCVARWDG 120 Query 121 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT 180 + DKGLRRW AV RSAARQSRRA IP V GV ST L++R+ + + VL LHE AT Sbjct 121 PKADKGLRRWSAVARSAARQSRRAYIPTVTGVESTRDLLRRI---ASTDSVVLALHESAT 177 Query 181 ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAV 240 +I AQ+ S++L++GPEGGIA DE+AALTDAGA AVRLGPTVLRTSTAAAVALGA+ Sbjct 178 APFAEIPVAQSDSVILIIGPEGGIADDEIAALTDAGAHAVRLGPTVLRTSTAAAVALGAL 237 Query 241 GVLTSRWD 248 G LTSRW+ Sbjct 238 GALTSRWN 245 >gi|120404793|ref|YP_954622.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium vanbaalenii PYR-1] gi|119957611|gb|ABM14616.1| protein of unknown function DUF558 [Mycobacterium vanbaalenii PYR-1] Length=246 Score = 293 bits (751), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 176/244 (73%), Positives = 192/244 (79%), Gaps = 3/244 (1%) Query 5 LFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGGLRA 64 LFYVD +P G +AVVDG+EG HAATV R RPGE+L L DG G +A CVVE +G L A Sbjct 4 LFYVDVVPAPGDLAVVDGEEGHHAATVCRTRPGEELDLADGAGTVAHCVVEDVAKGRLTA 63 Query 65 RVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG-ARV 123 RV R V P RP VTVVQALPKSERSELA+ELATEAGADAF+AWQA+RCVA WDG A+V Sbjct 64 RVQDRHLVAPPRPTVTVVQALPKSERSELAVELATEAGADAFIAWQASRCVARWDGAAKV 123 Query 124 DKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEATERI 183 DKGLRRWRAV RSAARQSRR IP VDGV+ST LV+ R A VLVLHE AT + Sbjct 124 DKGLRRWRAVARSAARQSRRPYIPDVDGVVSTRDLVESTR--CAEPGTVLVLHESATRPL 181 Query 184 VDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAVGVL 243 D AA Q L L+VGPEGG+A DELAALTDAGAVAVRLGPTVLRTSTAAAVALGA+GVL Sbjct 182 ADAAAGQNDPLTLIVGPEGGVADDELAALTDAGAVAVRLGPTVLRTSTAAAVALGALGVL 241 Query 244 TSRW 247 TSRW Sbjct 242 TSRW 245 >gi|145223290|ref|YP_001133968.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium gilvum PYR-GCK] gi|315443750|ref|YP_004076629.1| hypothetical protein Mspyr1_21400 [Mycobacterium sp. Spyr1] gi|145215776|gb|ABP45180.1| protein of unknown function DUF558 [Mycobacterium gilvum PYR-GCK] gi|315262053|gb|ADT98794.1| conserved hypothetical protein TIGR00046 [Mycobacterium sp. Spyr1] Length=251 Score = 275 bits (703), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 174/244 (72%), Positives = 187/244 (77%), Gaps = 4/244 (1%) Query 5 LFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGGLRA 64 LFYVD+LP G +AVVDGDEG HAATV R R GE L L DG G +A CVVE +G L A Sbjct 4 LFYVDSLPGPGELAVVDGDEGHHAATVCRTRVGEHLDLSDGAGAVAHCVVEDVAKGRLSA 63 Query 65 RVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG-ARV 123 RV R VP P VTVVQALPKS+RSELAIELATEAGADAFL WQAARCVA WDG A+V Sbjct 64 RVQDRILVPVPTPAVTVVQALPKSDRSELAIELATEAGADAFLGWQAARCVARWDGAAKV 123 Query 124 DKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEATERI 183 DKGLRRWRAV RSAARQSRR IP V G +ST LV R+ A A VLVLHE AT + Sbjct 124 DKGLRRWRAVARSAARQSRRPHIPEVRGPVSTQDLVGFTRD--AGPATVLVLHESATRPL 181 Query 184 VDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAVGVL 243 D A A SL LVVGPEGG+A +ELAALTDAGA+AVRLGPTVLRTSTAAAVALGA+GVL Sbjct 182 TD-ADLTARSLTLVVGPEGGVADEELAALTDAGAMAVRLGPTVLRTSTAAAVALGALGVL 240 Query 244 TSRW 247 T RW Sbjct 241 TGRW 244 >gi|333990191|ref|YP_004522805.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium sp. JDM601] gi|333486159|gb|AEF35551.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium sp. JDM601] Length=245 Score = 254 bits (650), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 177/246 (72%), Positives = 192/246 (79%), Gaps = 2/246 (0%) Query 2 VAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGG 61 +A LFYV+ LP+ GA+A +DGD GFHAATVRRIRPGEQL LGDGVG LA C VE R G Sbjct 1 MAGLFYVEALPEVGALADIDGDAGFHAATVRRIRPGEQLTLGDGVGVLAECRVEHTDRAG 60 Query 62 LRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGA 121 LR RV+ R V PPVTVVQALPKSERSELAIELATEAGAD F+AWQA RCVA WDGA Sbjct 61 LRVRVVERKVVDAPAPPVTVVQALPKSERSELAIELATEAGADGFVAWQADRCVARWDGA 120 Query 122 RVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEATE 181 R DKGLRRWRAV R+AA QSRRA IPPV+GVL T LV VRE VA G VL LH+ A Sbjct 121 RADKGLRRWRAVARAAAGQSRRAHIPPVEGVLGTAELVSWVRERVAGGTTVLALHDGAGA 180 Query 182 RIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAVG 241 + +AAA +L L+VGPEGGI ELAALTDAGAV RLGPTVLRTSTAAAVALGA+G Sbjct 181 GLPAVAAAS--ALALIVGPEGGITDTELAALTDAGAVVTRLGPTVLRTSTAAAVALGALG 238 Query 242 VLTSRW 247 VLT RW Sbjct 239 VLTPRW 244 >gi|226360380|ref|YP_002778158.1| 16S ribosomal RNA methyltransferase RsmE [Rhodococcus opacus B4] gi|226238865|dbj|BAH49213.1| hypothetical protein [Rhodococcus opacus B4] Length=253 Score = 251 bits (642), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 141/250 (57%), Positives = 177/250 (71%), Gaps = 0/250 (0%) Query 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG 60 M A +F++D LP+ G+ AV+DG EG HAATVRRI GE++VL DG G LA V AG+ Sbjct 1 MAATVFFLDPLPEVGSTAVLDGPEGRHAATVRRIGVGERIVLADGRGGLADTEVTAAGKD 60 Query 61 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG 120 L V R V P VTVVQALPK+ERSELA+ELATEAG DA + WQ++RCVA W+G Sbjct 61 RLELTVHDRRQVSAPSPSVTVVQALPKAERSELAVELATEAGVDAIVPWQSSRCVARWEG 120 Query 121 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT 180 +V KG+ RWR+ +AA+QSRRA +P V + T ++ VRE + G V VLHE AT Sbjct 121 PKVAKGVARWRSAALAAAKQSRRAIVPAVSELHRTAGMLAVVREVIGRGGVVAVLHEAAT 180 Query 181 ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAV 240 + + ++ A ++LVVGPEGGI+ DE+ ALT+AGAV V LGP VLRTSTAAAVALGA+ Sbjct 181 QGLAELPLRSAAEIVLVVGPEGGISEDEITALTEAGAVPVLLGPHVLRTSTAAAVALGAI 240 Query 241 GVLTSRWDAS 250 GVLT RW A+ Sbjct 241 GVLTDRWGAA 250 >gi|111018255|ref|YP_701227.1| 16S ribosomal RNA methyltransferase RsmE [Rhodococcus jostii RHA1] gi|110817785|gb|ABG93069.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=253 Score = 245 bits (625), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 142/250 (57%), Positives = 179/250 (72%), Gaps = 0/250 (0%) Query 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG 60 M A +F++D LP+ G+ AV+DG EG HAATVRRI GE++VL DG G LA V A + Sbjct 1 MAATVFFLDPLPEVGSTAVLDGPEGRHAATVRRIGVGERIVLADGRGGLADTEVTAAAKD 60 Query 61 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG 120 L V +R VP P VTVVQALPK+ERSELA+ELATEAG DA + WQ++RCVA W+G Sbjct 61 RLELTVHKRRQVPAPSPSVTVVQALPKAERSELAVELATEAGVDAIVPWQSSRCVARWEG 120 Query 121 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT 180 +V+KG+ RWR+ +AA+QSRRA +P V + T ++ VRE V G V VLHE AT Sbjct 121 PKVEKGVARWRSAALAAAKQSRRAIVPEVSELHRTAEMLAVVREVVGRGGVVAVLHEAAT 180 Query 181 ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAV 240 + + ++ A ++LVVGPEGGI+ +E+ ALTDAGAV V LGP VLRTSTAAAVALGA+ Sbjct 181 QGLAELPLRSAAEIVLVVGPEGGISEEEITALTDAGAVPVLLGPHVLRTSTAAAVALGAI 240 Query 241 GVLTSRWDAS 250 GVLT RW A+ Sbjct 241 GVLTDRWGAA 250 >gi|229493162|ref|ZP_04386954.1| ribosomal RNA small subunit methyltransferase E [Rhodococcus erythropolis SK121] gi|229319893|gb|EEN85722.1| ribosomal RNA small subunit methyltransferase E [Rhodococcus erythropolis SK121] Length=253 Score = 234 bits (598), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 135/247 (55%), Positives = 172/247 (70%), Gaps = 0/247 (0%) Query 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG 60 M A +F++D +P G +AV+DG EG HAATVRRI GE+LVL DG GR+A V G+ Sbjct 1 MAATVFFLDPVPGVGEIAVLDGQEGRHAATVRRIGVGERLVLADGRGRVADAEVTSVGKD 60 Query 61 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG 120 L V + +P VT+VQALPK+ERSELA+ELATEAG DA + WQ+ RCVA W+G Sbjct 61 RLELLVSDVQVLEQPKPLVTLVQALPKAERSELAVELATEAGIDAVIPWQSLRCVAKWEG 120 Query 121 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT 180 ++ KG+ RWR+ SAA+QSRRA +P + + TP ++ VR+ VA GA V VLHE AT Sbjct 121 PKLAKGVARWRSAAVSAAKQSRRAFVPEIAELHKTPAVIALVRDAVARGAVVAVLHESAT 180 Query 181 ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAV 240 + + A A + LVVGPEGG+ E++AL++AGA V LGPTVLRTSTA AVALGA+ Sbjct 181 TPLAGLPLASADEVFLVVGPEGGLDDSEISALSEAGATPVLLGPTVLRTSTAGAVALGAI 240 Query 241 GVLTSRW 247 GVLT RW Sbjct 241 GVLTDRW 247 >gi|333918866|ref|YP_004492447.1| hypothetical protein AS9A_1195 [Amycolicicoccus subflavus DQS3-9A1] gi|333481087|gb|AEF39647.1| hypothetical protein AS9A_1195 [Amycolicicoccus subflavus DQS3-9A1] Length=257 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 138/251 (55%), Positives = 173/251 (69%), Gaps = 3/251 (1%) Query 1 MVAMLFYVDTLPDT-GAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGR 59 M A +FY+D LP + G +AV+DG EG HAATVRRIR GEQ+VL DG G +A V G+ Sbjct 1 MAATVFYLDPLPPSAGDLAVLDGPEGRHAATVRRIRTGEQVVLADGQGGVAWGTVVTVGK 60 Query 60 GGLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWD 119 L RV RR S+ P V VVQALPKS+RSELA+EL TEAGAD + W+AARCVA W Sbjct 61 DTLEVRVERRESIAKPVPRVVVVQALPKSDRSELAVELMTEAGADEIIPWEAARCVARWQ 120 Query 120 GARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEA 179 G + K + RW+ V SAA+QSRRA +P V + ++ + + VAA A +VLHE+A Sbjct 121 GPKAHKNVERWQRVAASAAKQSRRAHVPLVHPLAASREVASAIAATVAASGAAVVLHEDA 180 Query 180 TERIVDI--AAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVAL 237 TE + + A S++L+VGPEGG++PDE T AGA VRLGPT+LRTSTAAAV L Sbjct 181 TEALAPVVHAVGDVRSILLIVGPEGGVSPDEAEQFTQAGAHPVRLGPTILRTSTAAAVTL 240 Query 238 GAVGVLTSRWD 248 GA+GVLT+RWD Sbjct 241 GALGVLTARWD 251 >gi|296140458|ref|YP_003647701.1| hypothetical protein Tpau_2764 [Tsukamurella paurometabola DSM 20162] gi|296028592|gb|ADG79362.1| protein of unknown function DUF558 [Tsukamurella paurometabola DSM 20162] Length=252 Score = 233 bits (593), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 134/249 (54%), Positives = 172/249 (70%), Gaps = 5/249 (2%) Query 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG 60 M A +F + LP G ++DGDEG HAA VRRIR GE+LVL DG G ARC E G+ Sbjct 1 MAATVFLAEVLPAPGEEYLLDGDEGRHAAAVRRIRVGEELVLSDGAGGFARCAAEAVGKS 60 Query 61 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG 120 + R + W+VP P V VVQALPKS+R+ELA+ELATEAGAD + WQAARCVA WDG Sbjct 61 DVTVRCAQTWTVPAPSPRVIVVQALPKSDRAELAVELATEAGADEIVPWQAARCVARWDG 120 Query 121 A--RVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEE 178 A + +KG+ RWRAV RSAA+Q+RRA +P V +++ L+ + + A V+VLHE Sbjct 121 AKSKAEKGVARWRAVARSAAKQARRAYVPRVHDLVTGRELIPLL---TSMDANVVVLHEG 177 Query 179 ATERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALG 238 + + ++ + ++++VVGPEGGI+P+EL AL GA LGPTVLRTSTAAAVALG Sbjct 178 SAVPLGEVDFSVTTTVVIVVGPEGGISPEELDALVAMGAQPALLGPTVLRTSTAAAVALG 237 Query 239 AVGVLTSRW 247 A+GVLT RW Sbjct 238 AIGVLTDRW 246 >gi|331698261|ref|YP_004334500.1| ribosomal RNA small subunit methyltransferase E [Pseudonocardia dioxanivorans CB1190] gi|326952950|gb|AEA26647.1| Ribosomal RNA small subunit methyltransferase E [Pseudonocardia dioxanivorans CB1190] Length=248 Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 145/247 (59%), Positives = 167/247 (68%), Gaps = 6/247 (2%) Query 2 VAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGG 61 A LF VD LP G AV+DG EG HAATVRR+RPGE++ L DG G LAR VV+ GR Sbjct 3 TAPLFLVDELP-AGPDAVLDGPEGRHAATVRRLRPGEEITLADGRGGLARAVVDTVGRDR 61 Query 62 LRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANW-DG 120 L RVL R + P P VT+ QAL K ER ELA+ELATEAG DA L W+AARCV W DG Sbjct 62 LDVRVLDRAELEPPTPRVTLAQALVKGERGELAVELATEAGVDAILPWRAARCVVRWEDG 121 Query 121 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT 180 AR D+ L RWRA VRSAA+Q+RRA +P V +ST L A LVLHE AT Sbjct 122 ARGDRALARWRATVRSAAKQARRAWVPEVGAPVSTRELAALCPTFDRA----LVLHESAT 177 Query 181 ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAV 240 E + + ++LVVGPEGG+A +E+A LT AGA AVRLGP VLR STAAAVALGA+ Sbjct 178 EGLASGLSGAPAEVLLVVGPEGGVADEEIAMLTAAGARAVRLGPEVLRASTAAAVALGAI 237 Query 241 GVLTSRW 247 G LTSRW Sbjct 238 GALTSRW 244 >gi|256375381|ref|YP_003099041.1| hypothetical protein Amir_1243 [Actinosynnema mirum DSM 43827] gi|255919684|gb|ACU35195.1| protein of unknown function DUF558 [Actinosynnema mirum DSM 43827] Length=244 Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 141/248 (57%), Positives = 172/248 (70%), Gaps = 6/248 (2%) Query 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG 60 M +F V++LP TG+ AV+DG EG HAATVRR+R GE+LVL DG G RC + +A + Sbjct 1 MTLPVFLVESLP-TGSDAVLDGPEGRHAATVRRLRAGEELVLSDGSGDQVRCEITEALKD 59 Query 61 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANW-D 119 LR RV+ RW+VP V +VQAL K ER ELA+ELATEAG DA L W+AARCVA W D Sbjct 60 SLRLRVVERWTVPEPGVRVVLVQALVKGERGELAVELATEAGVDAVLPWKAARCVAKWED 119 Query 120 GARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEA 179 G R K L RWRA R AA+Q+RRAR+P V P+ +++ + AAVLVLHE A Sbjct 120 GPRGAKALGRWRATAREAAKQARRARVPEV----GEPVTTKQLAALASRAAAVLVLHESA 175 Query 180 TERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGA 239 I +A +G ++LVVGPEGGIA EL+AL +AGA VRLGP+VLR STA AVALGA Sbjct 176 EVGIGSVALPPSGEVLLVVGPEGGIAEQELSALVEAGAHVVRLGPSVLRASTAGAVALGA 235 Query 240 VGVLTSRW 247 +GVLT RW Sbjct 236 LGVLTDRW 243 >gi|226307226|ref|YP_002767186.1| hypothetical protein RER_37390 [Rhodococcus erythropolis PR4] gi|226186343|dbj|BAH34447.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length=253 Score = 232 bits (591), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 132/247 (54%), Positives = 171/247 (70%), Gaps = 0/247 (0%) Query 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG 60 M A +F++D +P G +AV+DG EG HAATVRRI GE+LVL DG GR+A V G+ Sbjct 1 MAATVFFLDPVPGVGEIAVLDGQEGRHAATVRRIGVGERLVLADGRGRVADAEVTSVGKD 60 Query 61 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG 120 L V + +P VT++QALPK+ERSELA+ELATEAG DA + WQ+ RCVA W+G Sbjct 61 RLELLVSDVQVLEQPKPLVTLIQALPKAERSELAVELATEAGIDAVIPWQSLRCVAKWEG 120 Query 121 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT 180 ++ KG+ RWR+ SAA+QSRRA +P + + T ++ +R+ VA GA V VLHE AT Sbjct 121 PKLAKGVARWRSAAVSAAKQSRRAFVPEISDLHKTAAVIALIRDAVARGAVVAVLHESAT 180 Query 181 ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAV 240 + + A A + LVVGPEGG+ E++AL++AGA V LGPTVLRTSTA AVALGA+ Sbjct 181 TPLAGLPLASADEVFLVVGPEGGLDDSEISALSEAGATPVLLGPTVLRTSTAGAVALGAI 240 Query 241 GVLTSRW 247 GVLT RW Sbjct 241 GVLTDRW 247 >gi|325677133|ref|ZP_08156802.1| 16S rRNA m3U1498 methyltransferase [Rhodococcus equi ATCC 33707] gi|325552118|gb|EGD21811.1| 16S rRNA m3U1498 methyltransferase [Rhodococcus equi ATCC 33707] Length=253 Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 144/253 (57%), Positives = 178/253 (71%), Gaps = 0/253 (0%) Query 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG 60 M A +FY+D LPD G AV+DG EG HAATVRRI+PGE+L+L DG G LA VV AG+ Sbjct 1 MAATVFYLDPLPDVGRPAVLDGPEGRHAATVRRIKPGERLLLADGRGGLADAVVTAAGKD 60 Query 61 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG 120 L V R P P VT+VQALPK+ERSELA+ELATEAG D + WQ++RCVA W+G Sbjct 61 RLDLEVTARLDQQPPTPQVTLVQALPKAERSELAVELATEAGIDVVVPWQSSRCVARWEG 120 Query 121 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT 180 A++ KG+ RWR +AA+Q+RR+ +P V + T +++RVRE V G V VLHE A Sbjct 121 AKIHKGVTRWRNAAIAAAKQARRSFVPEVADLHHTQQVLERVREVVGRGGVVAVLHESAK 180 Query 181 ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAV 240 + A +MLVVGPEGG++ DE+AALT AGA AV LGPTVLRTSTAAAVALGA+ Sbjct 181 SPFASLPLRDAPEVMLVVGPEGGLSDDEIAALTGAGATAVLLGPTVLRTSTAAAVALGAI 240 Query 241 GVLTSRWDASASD 253 GVLT RW ++ D Sbjct 241 GVLTDRWSSAPID 253 >gi|312140293|ref|YP_004007629.1| RNA methyltransferase [Rhodococcus equi 103S] gi|311889632|emb|CBH48949.1| putative RNA methyltransferase [Rhodococcus equi 103S] Length=253 Score = 225 bits (574), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 143/253 (57%), Positives = 177/253 (70%), Gaps = 0/253 (0%) Query 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG 60 M A +FY+D LPD G V+DG EG HAATVRRI+PGE+L+L DG G LA VV AG+ Sbjct 1 MAATVFYLDPLPDVGRPTVLDGPEGRHAATVRRIKPGERLLLADGRGGLADAVVTAAGKD 60 Query 61 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG 120 L V R P P VT+VQALPK+ERSELA+ELATEAG D + WQ++RCVA W+G Sbjct 61 RLDLEVTARLDQQPPTPQVTLVQALPKAERSELAVELATEAGIDVVVPWQSSRCVARWEG 120 Query 121 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT 180 A++ KG+ RWR +AA+Q+RR+ +P V + T +++RVRE V G V VLHE A Sbjct 121 AKIHKGVTRWRNAAIAAAKQARRSFVPEVADLHHTQQVLERVREVVGRGGVVAVLHESAK 180 Query 181 ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAV 240 + A +MLVVGPEGG++ DE+AALT AGA AV LGPTVLRTSTAAAVALGA+ Sbjct 181 SPFASLPLRDAPEVMLVVGPEGGLSDDEIAALTGAGATAVLLGPTVLRTSTAAAVALGAI 240 Query 241 GVLTSRWDASASD 253 GVLT RW ++ D Sbjct 241 GVLTDRWSSAPID 253 >gi|54023394|ref|YP_117636.1| 16S ribosomal RNA methyltransferase RsmE [Nocardia farcinica IFM 10152] gi|54014902|dbj|BAD56272.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=246 Score = 224 bits (572), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 142/247 (58%), Positives = 170/247 (69%), Gaps = 1/247 (0%) Query 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG 60 M A +FY+D +P+ G VAV+DG EG HAATVRR R GE + L DG G LA V A R Sbjct 1 MAATVFYLDDIPEPGRVAVLDGPEGRHAATVRRTRVGEPITLSDGRGLLAASEVVAAQRD 60 Query 61 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG 120 L RVL R P P VTVVQALPKS+RSELA++L TEAGADA + WQAARCVANW+G Sbjct 61 RLELRVLERTVAPRPAPEVTVVQALPKSDRSELAVDLMTEAGADAIVPWQAARCVANWEG 120 Query 121 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT 180 + KG+ +WR+ RSAARQSRRA IP V + T +++ VR A GA V LHE T Sbjct 121 -KAAKGVEKWRSAARSAARQSRRAYIPEVADLHRTRDVLELVRGARAEGAVVAALHESGT 179 Query 181 ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAV 240 + +++ A A ++L+VGPEGG+ EL AL AGA LGPTVLRTSTAAAVALGA+ Sbjct 180 AKFTELSFAGASRVVLIVGPEGGLDDGELVALAAAGAQVTLLGPTVLRTSTAAAVALGAL 239 Query 241 GVLTSRW 247 G LTSRW Sbjct 240 GALTSRW 246 >gi|169628757|ref|YP_001702406.1| hypothetical protein MAB_1667 [Mycobacterium abscessus ATCC 19977] gi|169240724|emb|CAM61752.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=258 Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 137/249 (56%), Positives = 170/249 (69%), Gaps = 2/249 (0%) Query 3 AMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGGL 62 A +FYV +P G ++DGDEG HAA V R+R GE +++ DG G + VV R GL Sbjct 4 ATIFYVPRVPSAGEQVLLDGDEGHHAARVLRMRVGEPVMVCDGAGEVGDGVVASVDRTGL 63 Query 63 RARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGAR 122 V RWSV V P VTVVQALPKS+RS+LA++LA EAGAD + WQA RCV+ WD + Sbjct 64 AIEVTGRWSVAAVNPKVTVVQALPKSDRSDLAVDLAVEAGADEVIPWQAQRCVSRWDAHK 123 Query 123 VDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEATER 182 +KG RRW AV ++A+RQSRRA +P V + ST L + V A GA VLVLHE A Sbjct 124 AEKGRRRWEAVAQAASRQSRRAHVPSVPELHSTAQLAELVGARAAGGAVVLVLHESAESG 183 Query 183 IVDIAA--AQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAV 240 + + A + A S++L+VGPEGG+A +EL L DAGA VRLGPTVLRTS+AAAVALGA+ Sbjct 184 LGALGARLSSASSVVLIVGPEGGVADEELRILADAGAAPVRLGPTVLRTSSAAAVALGAL 243 Query 241 GVLTSRWDA 249 GVLT RW A Sbjct 244 GVLTDRWAA 252 >gi|262203051|ref|YP_003274259.1| hypothetical protein Gbro_3161 [Gordonia bronchialis DSM 43247] gi|262086398|gb|ACY22366.1| protein of unknown function DUF558 [Gordonia bronchialis DSM 43247] Length=249 Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 131/248 (53%), Positives = 165/248 (67%), Gaps = 2/248 (0%) Query 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQA-GR 59 M LF+ T+P+ G AV+ G EG HA TV R+ GE++V+GDG G A C V+ + Sbjct 1 MSPPLFWAQTVPEPGTDAVLSGPEGRHAVTVTRVAVGERIVIGDGAGSTAVCEVQAVESK 60 Query 60 GGLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWD 119 L ARV V P P VTVVQALPKSERSELA++LATEAGAD + WQAARCVA W Sbjct 61 DTLIARVREFAYVAPPDPQVTVVQALPKSERSELAVDLATEAGADVIVPWQAARCVARWA 120 Query 120 GARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEA 179 G + DKG+ +WRA SAA+QSRRA IP + + +T + + +A G V +LHEEA Sbjct 121 G-KADKGVAKWRAAASSAAKQSRRAWIPEITDLATTTDVRALCADTIATGGLVAILHEEA 179 Query 180 TERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGA 239 T + ++ AQA ++LV+GPEGG+ E+ LT GA V LGP +LRTSTAAAVALGA Sbjct 180 TGGLRELPLAQANRIVLVIGPEGGLDDGEVDDLTALGAEPVLLGPEILRTSTAAAVALGA 239 Query 240 VGVLTSRW 247 +GVLT RW Sbjct 240 IGVLTERW 247 >gi|258651801|ref|YP_003200957.1| hypothetical protein Namu_1573 [Nakamurella multipartita DSM 44233] gi|258555026|gb|ACV77968.1| protein of unknown function DUF558 [Nakamurella multipartita DSM 44233] Length=259 Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 130/244 (54%), Positives = 153/244 (63%), Gaps = 7/244 (2%) Query 5 LFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGGLRA 64 F V LP G V+DG EG HAA VRR+R GE LVL DG GRLA VV AGR L Sbjct 21 FFLVHELPAAGPF-VLDGPEGRHAAAVRRLRVGEALVLTDGAGRLAAAVVTAAGRAELTL 79 Query 65 RVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGA-RV 123 V PP VT+VQALPK ER ELA+ELATEAG DA + W A RC+A W +V Sbjct 80 DVQPAHRQPPPDVRVTLVQALPKGERGELAVELATEAGVDAIVPWTAQRCMARWRTPDQV 139 Query 124 DKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEATERI 183 DKG+RRWRA R +A+Q+RRA +PPV +T + R+ GA LVLHE + + Sbjct 140 DKGVRRWRATARESAKQARRAFVPPVHEPATTAEVGARL-----TGATALVLHESSVTPL 194 Query 184 VDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAVGVL 243 AG ++L+VGPEGG+ +EL AGA VRLGP VLRTSTA AVALGA+GVL Sbjct 195 AAAGLPPAGDVVLIVGPEGGLTEEELTVFGSAGATVVRLGPQVLRTSTAGAVALGALGVL 254 Query 244 TSRW 247 T RW Sbjct 255 TGRW 258 >gi|227833632|ref|YP_002835339.1| hypothetical protein cauri_1808 [Corynebacterium aurimucosum ATCC 700975] gi|262184635|ref|ZP_06044056.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium aurimucosum ATCC 700975] gi|227454648|gb|ACP33401.1| hypothetical protein cauri_1808 [Corynebacterium aurimucosum ATCC 700975] Length=246 Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 120/240 (50%), Positives = 159/240 (67%), Gaps = 7/240 (2%) Query 10 TLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLAR-CVVEQAGRGGLRARVLR 68 +L + G +DG EG HA TV+R+ PGE LVL DG GR A + + G+ L A V Sbjct 12 SLAEVGQPVGLDGAEGRHAVTVKRMGPGEHLVLIDGSGRRATATITDTQGKDTLAALVDD 71 Query 69 RWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARVDKGLR 128 +P P V VVQA+PKSER+ELA++LAT+AGAD +AWQA RCV+ WD + K L Sbjct 72 LVILPEPSPRVVVVQAIPKSERAELAVDLATQAGADEIIAWQADRCVSKWDAKKAPKALS 131 Query 129 RWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEATERIVDIAA 188 +W + +AA+QSRRAR+P V G L+T L Q + +GA LVLHEEA R+ D+ Sbjct 132 KWESAAVAAAKQSRRARVPAVRGPLTTRQLCQEI-----SGARALVLHEEAEVRLKDLTD 186 Query 189 AQAG-SLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAVGVLTSRW 247 A ++ L+VGPEGGI +ELA L DAGA A++LGP VLRT++A+ VAL ++G LT+RW Sbjct 187 LDAAETIYLLVGPEGGIGAEELARLQDAGAAAIKLGPEVLRTASASMVALASIGTLTARW 246 >gi|319947872|ref|ZP_08022059.1| 16S ribosomal RNA methyltransferase RsmE [Dietzia cinnamea P4] gi|319438478|gb|EFV93411.1| 16S ribosomal RNA methyltransferase RsmE [Dietzia cinnamea P4] Length=261 Score = 206 bits (524), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 133/250 (54%), Positives = 163/250 (66%), Gaps = 2/250 (0%) Query 5 LFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGGLRA 64 +F DT+P G V+DG EG HA + R+RPGE + +GDG G +A CVV G + A Sbjct 1 MFRADTVPAVGETVVLDGPEGRHAGSALRVRPGEAIRVGDGRGAVADCVVTTTSSGRVEA 60 Query 65 RVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARVD 124 V+ R VP P VTVVQALPKSERSELA+ELATEAGAD + WQA RCV+ W G +VD Sbjct 61 EVVTRVDVPRPTPEVTVVQALPKSERSELAVELATEAGADRIVPWQADRCVSRWTGPKVD 120 Query 125 KGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEATERIV 184 KG +W R+AA+QSRRA P + ++ + L V EV GA+ LVLHEE Sbjct 121 KGRTKWTNAARAAAKQSRRAWEPEIGDLVDSTALAALVAAEVEGGASALVLHEEGAAGFA 180 Query 185 D-IAAAQAGS-LMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAVGV 242 D + A G +++VVGPEGG++ EL ALT AGA V LGP VLRTSTAA VAL A+GV Sbjct 181 DAVTAGPTGERVLVVVGPEGGVSDAELDALTAAGARPVVLGPEVLRTSTAATVALAALGV 240 Query 243 LTSRWDASAS 252 LT RW A+ S Sbjct 241 LTPRWAAARS 250 >gi|296269135|ref|YP_003651767.1| hypothetical protein Tbis_1152 [Thermobispora bispora DSM 43833] gi|296091922|gb|ADG87874.1| protein of unknown function DUF558 [Thermobispora bispora DSM 43833] Length=246 Score = 199 bits (505), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 118/250 (48%), Positives = 149/250 (60%), Gaps = 7/250 (2%) Query 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRG 60 M +F D V+ G EG HAATVRR+RPGE++ + DG GR+A CVV + G+ Sbjct 1 MSVPVFLSDAAGSAEDHIVLSGPEGHHAATVRRLRPGERVDITDGAGRVAECVVAETGKD 60 Query 61 GLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDG 120 L ARVLRR+ P RP + VVQAL K +R ELA+E+ TEAG D + W A+RCV W G Sbjct 61 VLTARVLRRFHAEPPRPRLIVVQALAKGDRGELAVEMMTEAGVDVIVPWAASRCVVQWKG 120 Query 121 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT 180 R K L RWR+ R AA+QSRR +P V ST +V E ++ +VLHEEA Sbjct 121 DRAAKALARWRSTAREAAKQSRRFHLPEVTEQAST----AQVAELISGAELAVVLHEEAE 176 Query 181 ERIVDIA---AAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVAL 237 + I AG +++VVGPEGGI +ELA L++AGAV LGPTVLRTSTA A Sbjct 177 RPLSGITPPRGPSAGDIVVVVGPEGGITEEELARLSEAGAVPALLGPTVLRTSTAGVAAA 236 Query 238 GAVGVLTSRW 247 + RW Sbjct 237 AVLFARCGRW 246 >gi|302528840|ref|ZP_07281182.1| conserved hypothetical protein [Streptomyces sp. AA4] gi|302437735|gb|EFL09551.1| conserved hypothetical protein [Streptomyces sp. AA4] Length=245 Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 133/247 (54%), Positives = 165/247 (67%), Gaps = 9/247 (3%) Query 5 LFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVE--QAGRG-G 61 +F +P G A++DG+E HAATVRR+R GEQLVL DG G +ARC V+ +AGR Sbjct 3 VFLAPAVPAEGR-ALLDGEEARHAATVRRLRVGEQLVLSDGAGAMARCAVDAVEAGRAAS 61 Query 62 LRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWD-G 120 + VL RW P V V QAL K +R ELA+ELATEAGADA + W+AAR VA WD G Sbjct 62 VTLTVLERWQEEPPALRVHVAQALAKGDRGELAVELATEAGADAIVPWRAARSVARWDDG 121 Query 121 ARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEAT 180 R +K L RWRA RSAA+Q+RRA +P V + P+ + + + A +A LVL Sbjct 122 PRGEKALARWRATARSAAKQARRAHVPAV----AEPVGTRELAQLAATMSATLVLESGVA 177 Query 181 ERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAV 240 ++ D+A G L+LVVGPEGGI +ELA L ++GA VRLGPTVLRTSTAAAVALGA+ Sbjct 178 SKLADLALPDGGDLLLVVGPEGGITDEELALLEESGATTVRLGPTVLRTSTAAAVALGAL 237 Query 241 GVLTSRW 247 GVLT RW Sbjct 238 GVLTGRW 244 >gi|343926582|ref|ZP_08766084.1| hypothetical protein GOALK_063_00030 [Gordonia alkanivorans NBRC 16433] gi|343763503|dbj|GAA13010.1| hypothetical protein GOALK_063_00030 [Gordonia alkanivorans NBRC 16433] Length=249 Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 130/249 (53%), Positives = 166/249 (67%), Gaps = 4/249 (1%) Query 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVV-EQAGR 59 M LF+ D++P GA ++ G EG HA TV R+ GE++++GDG G +A C + E G+ Sbjct 1 MSPPLFWADSVPAPGADLILSGPEGRHAVTVARLGVGERILVGDGAGSVAGCEIREITGK 60 Query 60 GGLRARVLRRWSVPP-VRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANW 118 L A V R +S P VT+VQALPKSERSELA++LATEAG D + WQA RCVA W Sbjct 61 DTLVASV-REFSFQARPAPQVTLVQALPKSERSELAVDLATEAGIDVIVPWQAMRCVARW 119 Query 119 DGARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEE 178 G + DKG+ +WRA +AA+QSRR IP V + +T + R + VAAG V VLHEE Sbjct 120 TG-KADKGVAKWRAAASAAAKQSRRPWIPEVTDLATTIDVRARCADAVAAGGVVAVLHEE 178 Query 179 ATERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALG 238 A + ++ A A ++LVVGPEGG+ E+A LT GA +V LGP VLRTSTAAAVALG Sbjct 179 AARPLAELPLADASEIVLVVGPEGGLDDAEVADLTALGAHSVVLGPEVLRTSTAAAVALG 238 Query 239 AVGVLTSRW 247 A+GVLT RW Sbjct 239 AIGVLTGRW 247 >gi|300858951|ref|YP_003783934.1| hypothetical protein cpfrc_01534 [Corynebacterium pseudotuberculosis FRC41] gi|300686405|gb|ADK29327.1| hypothetical protein cpfrc_01534 [Corynebacterium pseudotuberculosis FRC41] gi|302206652|gb|ADL10994.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium pseudotuberculosis C231] gi|302331201|gb|ADL21395.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium pseudotuberculosis 1002] gi|308276895|gb|ADO26794.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium pseudotuberculosis I19] gi|341825338|gb|AEK92859.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium pseudotuberculosis PAT10] Length=256 Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 112/238 (48%), Positives = 155/238 (66%), Gaps = 3/238 (1%) Query 11 LPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVV-EQAGRGGLRARVLRR 69 LP+ G +A +DG EG HA +V+RI GE++ L D G A +V E +G+ L ARV Sbjct 21 LPEVGEIARLDGAEGRHAVSVKRIVAGERIKLIDAHGAYAEALVTETSGKDRLAARVEIS 80 Query 70 WSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARVDKGLRR 129 + PV P VTV QA+PKSERSELA++L T+ G DA + W+A RCVA W G + +K +++ Sbjct 81 ETQSPVGPSVTVFQAIPKSERSELAVDLLTQGGVDAIVPWEAQRCVAKWSGTKREKSVQK 140 Query 130 WRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEATERIVDIAAA 189 WRA +AA+QSRR+ IP + ++T L R++ E VL+LHE+A + + Sbjct 141 WRAAAVAAAKQSRRSAIPTIGSPINTSELALRLKTE--GFDLVLMLHEDAQQAFAALPLQ 198 Query 190 QAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAVGVLTSRW 247 QA S+ L++GPEGGI +E + L AGA +LGP VLRT++A VAL A+GVLTSRW Sbjct 199 QASSIALIIGPEGGIGQEESSELQAAGARLAKLGPEVLRTASAGIVALAAIGVLTSRW 256 >gi|255323732|ref|ZP_05364860.1| ribosomal RNA small subunit methyltransferase E [Corynebacterium tuberculostearicum SK141] gi|255299222|gb|EET78511.1| ribosomal RNA small subunit methyltransferase E [Corynebacterium tuberculostearicum SK141] Length=252 Score = 194 bits (494), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 121/239 (51%), Positives = 156/239 (66%), Gaps = 7/239 (2%) Query 14 TGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVG-RLARCVVEQAGRGGLRARVLRRWSV 72 TG G E HA TV+R+ GE+L L DG G RL + +G+ L V + Sbjct 16 TGEAFSFSGPEARHAVTVKRMGEGERLELIDGTGTRLTLTITATSGKDSLEGTVDSIDTA 75 Query 73 PPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARVDKGLRRWRA 132 P P VTVVQA+PKSER+ELA++LAT+AGAD +AWQA RCVA WDG + K + +W+A Sbjct 76 PEPTPRVTVVQAIPKSERAELAVDLATQAGADEIIAWQADRCVAKWDGKKAPKAVAKWQA 135 Query 133 VVRSAARQSRRARIPPVDGVLSTPMLVQRV---REEVAAGA-AVLVLHEEATERIVDIAA 188 SAA+QSRRARIP V G L+TP LVQ + R+ ++ A VLVLHEEAT I D+ Sbjct 136 AADSAAKQSRRARIPQVRGPLTTPQLVQELTGRRDGASSNAPTVLVLHEEATASIKDVPL 195 Query 189 AQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAVGVLTSRW 247 + ++L+VGPEGGI EL L +AGA ++LGP VLRT++AA VAL A+G+ T RW Sbjct 196 TE--DVVLLVGPEGGIGDAELDRLKEAGATPIKLGPEVLRTASAAMVALAAIGMRTERW 252 >gi|269127458|ref|YP_003300828.1| hypothetical protein Tcur_3251 [Thermomonospora curvata DSM 43183] gi|268312416|gb|ACY98790.1| protein of unknown function DUF558 [Thermomonospora curvata DSM 43183] Length=244 Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 120/248 (49%), Positives = 150/248 (61%), Gaps = 5/248 (2%) Query 1 MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQ-AGR 59 M +F +D+ V++G EG HA TVRR+RPGE++ L DG G LA CVV AG+ Sbjct 1 MSPPVFLIDSTALREDRVVLEGPEGRHAVTVRRLRPGERVDLTDGDGLLAECVVAAVAGK 60 Query 60 GGLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWD 119 L VL R P P + VVQALPK ER ELA+E TEAG D + WQAARCV W Sbjct 61 DRLVLEVLARHRHQPPSPRLVVVQALPKGERGELAVETMTEAGVDEIVPWQAARCVTRWR 120 Query 120 GARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEA 179 R+DK L RWR R AA+QSRR+R+P + + +T ++V +A A +VLHE A Sbjct 121 PDRMDKALGRWRTTAREAAKQSRRSRLPQIPPLATT----EQVAARLAGAARAIVLHEAA 176 Query 180 TERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGA 239 T + + G ++ VVGPEGGI +ELA +AGAVAVRLGPTVLRTSTA A Sbjct 177 TVPLRAVDLPSEGEIIAVVGPEGGITDEELACFAEAGAVAVRLGPTVLRTSTAGVAAAAI 236 Query 240 VGVLTSRW 247 + T RW Sbjct 237 LLSATGRW 244 >gi|311741359|ref|ZP_07715183.1| RsmE family RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] gi|311303529|gb|EFQ79608.1| RsmE family RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] Length=252 Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 121/239 (51%), Positives = 156/239 (66%), Gaps = 7/239 (2%) Query 14 TGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVG-RLARCVVEQAGRGGLRARVLRRWSV 72 TG G E HA TV+R+ GE+L L DG G RL + +G+ L V + Sbjct 16 TGEAFSFSGPEARHAVTVKRMGEGERLELIDGTGTRLTLTITATSGKDSLEGTVDSIDTA 75 Query 73 PPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARVDKGLRRWRA 132 P P V+VVQA+PKSER+ELA++LAT+AGAD +AWQA RCVA WDG + K + +W+A Sbjct 76 PVPTPRVSVVQAIPKSERAELAVDLATQAGADEIIAWQADRCVAKWDGKKAPKAVAKWQA 135 Query 133 VVRSAARQSRRARIPPVDGVLSTPMLVQRV---REEVAAGA-AVLVLHEEATERIVDIAA 188 SAA+QSRRARIP V G L+TP LVQ + R+ ++ A VLVLHEEAT I D+ Sbjct 136 AADSAAKQSRRARIPQVRGPLTTPQLVQELTGGRDGASSNAPTVLVLHEEATVSIKDVPL 195 Query 189 AQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAVGVLTSRW 247 A ++L+VGPEGGI EL L +AGA ++LGP VLRT++AA VAL A+G+ T RW Sbjct 196 AD--DVVLLVGPEGGIGDAELDRLKEAGATPIKLGPEVLRTASAAMVALAAIGMRTERW 252 >gi|145296244|ref|YP_001139065.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium glutamicum R] gi|140846164|dbj|BAF55163.1| hypothetical protein [Corynebacterium glutamicum R] Length=241 Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 110/244 (46%), Positives = 154/244 (64%), Gaps = 8/244 (3%) Query 5 LFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQ-AGRGGLR 63 +F D+ G + G EG HA TV+RI+ GE++ L DG G C V G+ L Sbjct 5 VFISDSAAGPGETIELAGPEGRHAVTVKRIQVGEKISLIDGRGTARTCTVTALQGKDHLN 64 Query 64 ARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARV 123 A V +P P VT+VQA+PKSERSEL I+L T+AGAD +AWQA+RCVA W G + Sbjct 65 AVVDLVEEIPAPNPQVTIVQAIPKSERSELTIDLLTQAGADRIVAWQASRCVAKW-GGKE 123 Query 124 DKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEATERI 183 K L +W+ +AA+QSRRA IP + GV+ + + + E A ++LHEEAT I Sbjct 124 AKSLAKWQVAAEAAAKQSRRATIPEILGVVGEEGVEKLIDESDLA----IILHEEATAAI 179 Query 184 VDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAVGVL 243 ++ +G++++++GPEGG+AP E++ DAGA V+LGP VLRT++A VAL A+GVL Sbjct 180 RELEF--SGNVVVIIGPEGGVAPSEISRFVDAGAHTVKLGPEVLRTASAGMVALAAIGVL 237 Query 244 TSRW 247 + RW Sbjct 238 SDRW 241 >gi|334697346|gb|AEG82143.1| hypothetical protein CULC809_01611 [Corynebacterium ulcerans 809] Length=256 Score = 189 bits (479), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 110/238 (47%), Positives = 151/238 (64%), Gaps = 3/238 (1%) Query 11 LPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVG-RLARCVVEQAGRGGLRARVLRR 69 LP GA +DG EG HA +V+RI GE++ L D G + V E +G+ L ARV Sbjct 21 LPHVGAAVRLDGAEGRHAVSVKRIVVGERIKLIDAHGAHVEALVTETSGKDKLTARVESS 80 Query 70 WSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARVDKGLRR 129 P VTV QA+PKSERSELA++L T+ GADA + W+A RCVA W GA+ +K + + Sbjct 81 GVQEVAIPSVTVFQAIPKSERSELAVDLLTQGGADAIVPWEAQRCVAKWTGAKREKSVHK 140 Query 130 WRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEATERIVDIAAA 189 WRA +AA+QSRR+ IP +D ++T L +R+ E V++LHE+A + + Sbjct 141 WRAAAVAAAKQSRRSAIPTIDSPVTTSELARRLATE--NFDMVVMLHEDAQQSFAALPLR 198 Query 190 QAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAVGVLTSRW 247 +A S+ L++GPEGGI +E A L AGA+ +LGP VLRT++A VAL A+G LTSRW Sbjct 199 EAASIALIIGPEGGIGQEEAAELQAAGALLTKLGPEVLRTASAGIVALAAIGALTSRW 256 >gi|344044712|gb|EGV40388.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium glutamicum S9114] Length=241 Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 110/244 (46%), Positives = 154/244 (64%), Gaps = 8/244 (3%) Query 5 LFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQ-AGRGGLR 63 +F D+ G + G EG HA TV+RI+ GE++ L DG G C V G+ L Sbjct 5 VFISDSAAGPGETIELAGPEGRHAVTVKRIQVGEEISLIDGRGTARTCTVTALQGKDRLN 64 Query 64 ARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARV 123 A V +P P VT+VQA+PKSERSEL I+L T+AGAD +AWQA+RCVA W G + Sbjct 65 AVVDLVEEIPAPNPQVTIVQAIPKSERSELTIDLLTQAGADRIVAWQASRCVAKW-GGKE 123 Query 124 DKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEATERI 183 K L +W+ +AA+QSRRA IP + GV+ + + + E A ++LHEEAT I Sbjct 124 AKSLAKWQVAAEAAAKQSRRATIPEILGVVGEEGVEKLIDESDLA----IILHEEATAAI 179 Query 184 VDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAVGVL 243 ++ +G++++++GPEGG+AP E++ DAGA V+LGP VLRT++A VAL A+GVL Sbjct 180 RELEF--SGNVVVIIGPEGGVAPSEISRFVDAGAHTVKLGPEVLRTASAGMVALAAIGVL 237 Query 244 TSRW 247 + RW Sbjct 238 SDRW 241 >gi|19553487|ref|NP_601489.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium glutamicum ATCC 13032] gi|62391130|ref|YP_226532.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium glutamicum ATCC 13032] gi|21325060|dbj|BAB99682.1| Uncharacterized BCR [Corynebacterium glutamicum ATCC 13032] gi|41326469|emb|CAF20631.1| conserved hypothetical protein [Corynebacterium glutamicum ATCC 13032] Length=241 Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 110/244 (46%), Positives = 154/244 (64%), Gaps = 8/244 (3%) Query 5 LFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQ-AGRGGLR 63 +F D+ G + G EG HA TV+RI+ GE++ L DG G C V G+ L Sbjct 5 VFISDSAAGPGETIELAGPEGRHAVTVKRIQVGEKISLIDGRGTARTCTVTALQGKDRLN 64 Query 64 ARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARV 123 A V +P P VT+VQA+PKSERSEL I+L T+AGAD +AWQA+RCVA W G + Sbjct 65 AVVDLVEEIPAPNPQVTIVQAIPKSERSELTIDLLTQAGADRIVAWQASRCVAKW-GGKE 123 Query 124 DKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEATERI 183 K L +W+ +AA+QSRRA IP + GV+ + + + E A ++LHEEAT I Sbjct 124 AKSLAKWQVAAEAAAKQSRRATIPEILGVVGEEGVEKLIDESDLA----IILHEEATAAI 179 Query 184 VDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAVGVL 243 ++ +G++++++GPEGG+AP E++ DAGA V+LGP VLRT++A VAL A+GVL Sbjct 180 RELEF--SGNVVVIIGPEGGVAPSEISRFVDAGAHTVKLGPEVLRTASAGMVALAAIGVL 237 Query 244 TSRW 247 + RW Sbjct 238 SDRW 241 >gi|237785905|ref|YP_002906610.1| hypothetical protein ckrop_1323 [Corynebacterium kroppenstedtii DSM 44385] gi|237758817|gb|ACR18067.1| conserved hypothetical protein [Corynebacterium kroppenstedtii DSM 44385] Length=299 Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 113/241 (47%), Positives = 149/241 (62%), Gaps = 4/241 (1%) Query 10 TLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQA-GRGGLRARVLR 68 T D G ++ G EG HA TV+R+ G+ LVL +G G RC VE + LRA VL Sbjct 56 TQYDVGDAVLLTGSEGRHAVTVKRLVAGDSLVLVNGEGDWLRCTVESTPSKTRLRATVLE 115 Query 69 RWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARVDKGLR 128 P PP+TVVQALPKS+RSELA++LA +AGADA + W A+R +A W G Sbjct 116 AGHTPMSTPPITVVQALPKSDRSELAVDLACQAGADAIVPWSASRSIARWKGKEKKA-GG 174 Query 129 RWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEATERIVDIAA 188 +W ++++QSRRAR+P + + +T +V + + +G LVL E + R+ +A Sbjct 175 KWADTAVASSKQSRRARLPRIAALSTTDDVVNAIEQVTQSGGLALVLEESESVRVTSLAE 234 Query 189 A--QAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAVGVLTSR 246 QA +ML+VGPEGGIAPDE A AGA +V LGP VLRT+TAA+VALGAV VL R Sbjct 235 NLRQASQIMLIVGPEGGIAPDEHDAFVRAGATSVVLGPEVLRTATAASVALGAVNVLCGR 294 Query 247 W 247 W Sbjct 295 W 295 Lambda K H 0.321 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 391676602750 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40