BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2389c
Length=154
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609526|ref|NP_216905.1| resuscitation-promoting factor RpfD... 311 2e-83
gi|167968732|ref|ZP_02551009.1| resuscitation-promoting factor r... 260 4e-68
gi|240169939|ref|ZP_04748598.1| putative resuscitation-promoting... 165 2e-39
gi|296393005|ref|YP_003657889.1| transglycosylase [Segniliparus ... 133 8e-30
gi|169631158|ref|YP_001704807.1| hypothetical protein MAB_4080c ... 124 3e-27
gi|183982778|ref|YP_001851069.1| resuscitation-promoting factor-... 124 4e-27
gi|333990161|ref|YP_004522775.1| resuscitation-promoting factor-... 123 7e-27
gi|118618374|ref|YP_906706.1| resuscitation-promoting factor-lik... 123 8e-27
gi|262203254|ref|YP_003274462.1| transglycosylase [Gordonia bron... 120 6e-26
gi|240170530|ref|ZP_04749189.1| resuscitation-promoting factor-l... 120 6e-26
gi|120404915|ref|YP_954744.1| transglycosylase domain-containing... 120 7e-26
gi|118469017|ref|YP_888904.1| hypothetical protein MSMEG_4640 [M... 118 3e-25
gi|145223207|ref|YP_001133885.1| transglycosylase domain-contain... 116 1e-24
gi|15828097|ref|NP_302360.1| hypothetical protein ML2030 [Mycoba... 115 3e-24
gi|226305719|ref|YP_002765679.1| resuscitation-promoting factor ... 114 6e-24
gi|229490962|ref|ZP_04384795.1| secreted protein [Rhodococcus er... 114 7e-24
gi|111023353|ref|YP_706325.1| hypothetical protein RHA1_ro06390 ... 112 1e-23
gi|120404916|ref|YP_954745.1| transglycosylase domain-containing... 112 2e-23
gi|296164903|ref|ZP_06847459.1| transglycosylase domain protein ... 111 3e-23
gi|302530572|ref|ZP_07282914.1| predicted protein [Streptomyces ... 110 6e-23
gi|41407705|ref|NP_960541.1| hypothetical protein MAP1607c [Myco... 110 6e-23
gi|54023902|ref|YP_118144.1| hypothetical protein nfa19340 [Noca... 110 8e-23
gi|226365861|ref|YP_002783644.1| resuscitation-promoting factor ... 110 9e-23
gi|253799072|ref|YP_003032073.1| resuscitation-promoting factor ... 110 9e-23
gi|15609021|ref|NP_216400.1| resuscitation-promoting factor RpfC... 110 9e-23
gi|15841354|ref|NP_336391.1| hypothetical protein MT1932 [Mycoba... 110 9e-23
gi|340626892|ref|YP_004745344.1| putative resuscitation-promotin... 110 9e-23
gi|333990096|ref|YP_004522710.1| resuscitation-promoting factor-... 110 1e-22
gi|289554342|ref|ZP_06443552.1| resuscitation-promoting factor r... 110 1e-22
gi|336457545|gb|EGO36551.1| transglycosylase-like protein [Mycob... 109 1e-22
gi|256379283|ref|YP_003102943.1| transglycosylase domain-contain... 109 1e-22
gi|343924791|ref|ZP_08764330.1| putative resuscitation-promoting... 109 1e-22
gi|323719626|gb|EGB28749.1| resuscitation-promoting factor rpfC ... 109 1e-22
gi|308231968|ref|ZP_07414442.2| resuscitation-promoting factor r... 109 2e-22
gi|326383331|ref|ZP_08205019.1| transglycosylase domain-containi... 108 2e-22
gi|118470954|ref|YP_888906.1| resuscitation-promoting factor [My... 108 3e-22
gi|312140603|ref|YP_004007939.1| resuscitation-promoting factor ... 108 3e-22
gi|111023354|ref|YP_706326.1| hypothetical protein RHA1_ro06391 ... 108 3e-22
gi|54026495|ref|YP_120737.1| hypothetical protein nfa45220 [Noca... 108 3e-22
gi|315443664|ref|YP_004076543.1| transglycosylase-like protein [... 108 3e-22
gi|108800529|ref|YP_640726.1| transglycosylase-like protein [Myc... 107 4e-22
gi|226359722|ref|YP_002777500.1| resuscitation-promoting factor ... 107 4e-22
gi|145223206|ref|YP_001133884.1| transglycosylase domain-contain... 107 5e-22
gi|342859533|ref|ZP_08716186.1| hypothetical protein MCOL_11658 ... 107 6e-22
gi|226365860|ref|YP_002783643.1| resuscitation-promoting factor ... 107 9e-22
gi|108800530|ref|YP_640727.1| transglycosylase-like protein [Myc... 106 1e-21
gi|108799874|ref|YP_640071.1| transglycosylase-like protein [Myc... 106 1e-21
gi|315441569|ref|YP_004074446.1| transglycosylase-like protein [... 105 2e-21
gi|119868984|ref|YP_938936.1| transglycosylase domain-containing... 105 2e-21
gi|256374622|ref|YP_003098282.1| transglycosylase domain-contain... 104 5e-21
>gi|15609526|ref|NP_216905.1| resuscitation-promoting factor RpfD [Mycobacterium tuberculosis
H37Rv]
gi|15841902|ref|NP_336939.1| hypothetical protein MT2458 [Mycobacterium tuberculosis CDC1551]
gi|31793566|ref|NP_856059.1| resuscitation-promoting factor RpfD [Mycobacterium bovis AF2122/97]
49 more sequence titles
Length=154
Score = 311 bits (797), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 154/154 (100%), Positives = 154/154 (100%), Gaps = 0/154 (0%)
Query 1 MTPGLLTTAGAGRPRDRCARIVCTVFIETAVVATMFVALLGLSTISSKADDIDWDAIAQC 60
MTPGLLTTAGAGRPRDRCARIVCTVFIETAVVATMFVALLGLSTISSKADDIDWDAIAQC
Sbjct 1 MTPGLLTTAGAGRPRDRCARIVCTVFIETAVVATMFVALLGLSTISSKADDIDWDAIAQC 60
Query 61 ESGGNWAANTGNGLYGGLQISQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPK 120
ESGGNWAANTGNGLYGGLQISQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPK
Sbjct 61 ESGGNWAANTGNGLYGGLQISQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPK 120
Query 121 CSSCSQGDAPLGSLTHILTFLAAETGGCSGSRDD 154
CSSCSQGDAPLGSLTHILTFLAAETGGCSGSRDD
Sbjct 121 CSSCSQGDAPLGSLTHILTFLAAETGGCSGSRDD 154
>gi|167968732|ref|ZP_02551009.1| resuscitation-promoting factor rpfD [Mycobacterium tuberculosis
H37Ra]
gi|254551437|ref|ZP_05141884.1| resuscitation-promoting factor rpfD [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|308232117|ref|ZP_07664005.1| resuscitation-promoting factor rpfD [Mycobacterium tuberculosis
SUMu001]
26 more sequence titles
Length=130
Score = 260 bits (665), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 129/130 (99%), Positives = 130/130 (100%), Gaps = 0/130 (0%)
Query 25 VFIETAVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQAT 84
+FIETAVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQAT
Sbjct 1 MFIETAVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQAT 60
Query 85 WDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCSQGDAPLGSLTHILTFLAAE 144
WDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCSQGDAPLGSLTHILTFLAAE
Sbjct 61 WDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCSQGDAPLGSLTHILTFLAAE 120
Query 145 TGGCSGSRDD 154
TGGCSGSRDD
Sbjct 121 TGGCSGSRDD 130
>gi|240169939|ref|ZP_04748598.1| putative resuscitation-promoting factor [Mycobacterium kansasii
ATCC 12478]
Length=150
Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 82/130 (64%), Positives = 97/130 (75%), Gaps = 0/130 (0%)
Query 25 VFIETAVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQAT 84
VF A ++ +S SS AD ++W+AIAQCESGGNWAA+TGNG YGGLQISQ T
Sbjct 21 VFAVAAAAGAAWMLGPAVSPGSSHADSVNWEAIAQCESGGNWAADTGNGFYGGLQISQPT 80
Query 85 WDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCSQGDAPLGSLTHILTFLAAE 144
W NGG G P+AASP QI+V + IM TQGPGAWP+CSSCS+GD P+GSLTHILT L A
Sbjct 81 WQGNGGSGLPSAASPDGQIDVGERIMTTQGPGAWPRCSSCSRGDGPVGSLTHILTALMAA 140
Query 145 TGGCSGSRDD 154
GGC+G+ DD
Sbjct 141 NGGCTGNTDD 150
>gi|296393005|ref|YP_003657889.1| transglycosylase [Segniliparus rotundus DSM 44985]
gi|296180152|gb|ADG97058.1| Transglycosylase domain protein [Segniliparus rotundus DSM 44985]
Length=142
Score = 133 bits (335), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 66/90 (74%), Positives = 76/90 (85%), Gaps = 1/90 (1%)
Query 52 IDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNGGVGSPAAASPQQQIEVADNIMK 111
+DWDAIAQCESGGNWAA+TGNG YGGLQIS +TW +NGGVGSPAAASPQ+QI VAD IM
Sbjct 38 VDWDAIAQCESGGNWAADTGNGFYGGLQISASTWRANGGVGSPAAASPQEQIAVADRIMA 97
Query 112 TQGPGAWPKCSSCSQGDAPLGSLTHILTFL 141
QGP AWPKC + S G+A +GS+ +ILT L
Sbjct 98 AQGPSAWPKC-AMSTGNAAVGSIPNILTQL 126
>gi|169631158|ref|YP_001704807.1| hypothetical protein MAB_4080c [Mycobacterium abscessus ATCC
19977]
gi|169243125|emb|CAM64153.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=146
Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/132 (48%), Positives = 87/132 (66%), Gaps = 14/132 (10%)
Query 15 RDRCARIVCTVFIETAVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGL 74
RDR R VC +F +F+ L ++ + AD ++WDA+A+CESGGNW+ANTGNG
Sbjct 8 RDR--RAVCLIF------TVLFMMSLSMTASVASADSMNWDAVAECESGGNWSANTGNGF 59
Query 75 YGGLQISQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCSQGD------ 128
YGGLQ +TW ++GGVG+PA AS ++QI VA+++++TQGPGAWPKC G
Sbjct 60 YGGLQFKPSTWAAHGGVGNPAEASREEQIAVAEDVLRTQGPGAWPKCGGGGIGGGAGCQF 119
Query 129 APLGSLTHILTF 140
P GS+ I+ F
Sbjct 120 VPGGSIFGIVNF 131
>gi|183982778|ref|YP_001851069.1| resuscitation-promoting factor-like protein [Mycobacterium marinum
M]
gi|183176104|gb|ACC41214.1| resuscitation-promoting factor-like protein [Mycobacterium marinum
M]
Length=137
Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/102 (56%), Positives = 76/102 (75%), Gaps = 0/102 (0%)
Query 22 VCTVFIETAVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQIS 81
+ ++A+ VA + LST ++AD ++W+A+AQCESGGNW+ANTGNG YGGLQ
Sbjct 4 IAKPLTKSALAGGFVVASMSLSTGVAQADLMNWEAVAQCESGGNWSANTGNGAYGGLQFK 63
Query 82 QATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSS 123
QATW+ GGVG+PA+AS QQQI +A+ ++ QGP AWPKCSS
Sbjct 64 QATWEEYGGVGNPASASKQQQIAIANRVLAGQGPAAWPKCSS 105
>gi|333990161|ref|YP_004522775.1| resuscitation-promoting factor-like protein [Mycobacterium sp.
JDM601]
gi|333486129|gb|AEF35521.1| resuscitation-promoting factor-like protein [Mycobacterium sp.
JDM601]
Length=135
Score = 123 bits (309), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 65/110 (60%), Positives = 82/110 (75%), Gaps = 6/110 (5%)
Query 44 TISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNGGVGSPAAASPQQQI 103
T ++ A+ I+W+AIA CESGG+WAA++GNG YGGLQIS ATWD+NGGVG P+ AS QQQI
Sbjct 20 TAAAHAEPINWEAIANCESGGDWAADSGNGGYGGLQISAATWDANGGVGLPSDASRQQQI 79
Query 104 EVADNIMKTQGPGAWPKCSS------CSQGDAPLGSLTHILTFLAAETGG 147
VA IM ++GPGAWP C+S G AP+GSLTH L+ L ++GG
Sbjct 80 AVAKRIMASEGPGAWPACASRGAAATTGAGAAPVGSLTHYLSALFEDSGG 129
>gi|118618374|ref|YP_906706.1| resuscitation-promoting factor-like protein [Mycobacterium ulcerans
Agy99]
gi|118570484|gb|ABL05235.1| resuscitation-promoting factor-like protein [Mycobacterium ulcerans
Agy99]
Length=146
Score = 123 bits (309), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 56/103 (55%), Positives = 75/103 (73%), Gaps = 0/103 (0%)
Query 22 VCTVFIETAVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQIS 81
+ ++A+ VA + LST ++AD ++W+A+AQCESGGNW+ NTGNG YGGLQ
Sbjct 13 IAKPLTKSALAGGFVVASMSLSTGVAQADLMNWEAVAQCESGGNWSVNTGNGAYGGLQFK 72
Query 82 QATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSC 124
QATW+ GGVG+PA+AS QQQI +A+ ++ QGP AWPKCSS
Sbjct 73 QATWEEYGGVGNPASASKQQQIAIANRVLAGQGPAAWPKCSSA 115
>gi|262203254|ref|YP_003274462.1| transglycosylase [Gordonia bronchialis DSM 43247]
gi|262086601|gb|ACY22569.1| Transglycosylase domain protein [Gordonia bronchialis DSM 43247]
Length=106
Score = 120 bits (301), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 55/92 (60%), Positives = 70/92 (77%), Gaps = 0/92 (0%)
Query 30 AVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNG 89
AVV + A GL ++ AD +WDA+AQCESGGNWA NTGNG YGGLQ +Q+TW++NG
Sbjct 11 AVVGALTAAPFGLLATTASADTHNWDAVAQCESGGNWAINTGNGYYGGLQFTQSTWEANG 70
Query 90 GVGSPAAASPQQQIEVADNIMKTQGPGAWPKC 121
G GS + AS ++QI VA+N++ TQGPGAWP C
Sbjct 71 GSGSASNASREEQIRVAENVLATQGPGAWPVC 102
>gi|240170530|ref|ZP_04749189.1| resuscitation-promoting factor-like protein [Mycobacterium kansasii
ATCC 12478]
Length=141
Score = 120 bits (301), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 56/84 (67%), Positives = 66/84 (79%), Gaps = 0/84 (0%)
Query 40 LGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNGGVGSPAAASP 99
+ LST + AD ++WDA+AQCESGGNW ANTGNG YGGLQ QATWD GGVG+PA AS
Sbjct 25 MSLSTGIAHADVMNWDAVAQCESGGNWTANTGNGAYGGLQFKQATWDEYGGVGNPATASK 84
Query 100 QQQIEVADNIMKTQGPGAWPKCSS 123
QQQI VA+ ++ QGP AWPKC+S
Sbjct 85 QQQIAVANRVLAGQGPAAWPKCAS 108
>gi|120404915|ref|YP_954744.1| transglycosylase domain-containing protein [Mycobacterium vanbaalenii
PYR-1]
gi|119957733|gb|ABM14738.1| Transglycosylase domain protein [Mycobacterium vanbaalenii PYR-1]
Length=170
Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 55/104 (53%), Positives = 75/104 (73%), Gaps = 2/104 (1%)
Query 20 RIVCTVFIETAVVATMFVALLGL--STISSKADDIDWDAIAQCESGGNWAANTGNGLYGG 77
++V + A+ + V + + +T ++ AD ++WDAIAQCESGGNWA NTGNG +GG
Sbjct 5 KVVSKGLMAAAISGALAVVPMAMDGTTATAHADSVNWDAIAQCESGGNWAINTGNGHFGG 64
Query 78 LQISQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKC 121
LQ QATW +NGGVG+PAAA +QI VA+N+++TQG AWPKC
Sbjct 65 LQFKQATWSANGGVGNPAAAPRHEQIRVAENVLRTQGLKAWPKC 108
>gi|118469017|ref|YP_888904.1| hypothetical protein MSMEG_4640 [Mycobacterium smegmatis str.
MC2 155]
gi|118170304|gb|ABK71200.1| secreted protein [Mycobacterium smegmatis str. MC2 155]
Length=153
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/96 (58%), Positives = 72/96 (75%), Gaps = 0/96 (0%)
Query 26 FIETAVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATW 85
F TA+ + + + LS ++ AD ++WDAIA CESGGNW+ NTGNG YGGLQ Q+TW
Sbjct 5 FGLTALAGALAMGPMVLSPATAAADSVNWDAIAACESGGNWSTNTGNGHYGGLQFKQSTW 64
Query 86 DSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKC 121
++GGVGSPA AS +QQI VA+N+++TQG AWPKC
Sbjct 65 AAHGGVGSPATASREQQIAVAENVLRTQGLAAWPKC 100
>gi|145223207|ref|YP_001133885.1| transglycosylase domain-containing protein [Mycobacterium gilvum
PYR-GCK]
gi|315443665|ref|YP_004076544.1| transglycosylase-like protein [Mycobacterium sp. Spyr1]
gi|145215693|gb|ABP45097.1| Transglycosylase domain protein [Mycobacterium gilvum PYR-GCK]
gi|315261968|gb|ADT98709.1| transglycosylase-like protein [Mycobacterium sp. Spyr1]
Length=170
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/98 (56%), Positives = 70/98 (72%), Gaps = 2/98 (2%)
Query 26 FIETAVVATMFVALLGLS--TISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQA 83
+ A+ + V + L T ++ AD ++WDAIAQCESGGNWA NTGNG +GGLQ QA
Sbjct 11 LMAAAISGALAVVPMALDGGTATAHADSVNWDAIAQCESGGNWAINTGNGHFGGLQFKQA 70
Query 84 TWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKC 121
TW +NGGVG+PA A +QI VA+N+++TQG AWPKC
Sbjct 71 TWSANGGVGNPARAPRHEQIRVAENVLRTQGIKAWPKC 108
>gi|15828097|ref|NP_302360.1| hypothetical protein ML2030 [Mycobacterium leprae TN]
gi|221230574|ref|YP_002503990.1| hypothetical protein MLBr_02030 [Mycobacterium leprae Br4923]
gi|13093651|emb|CAC30985.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219933681|emb|CAR72127.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=157
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/121 (48%), Positives = 79/121 (66%), Gaps = 6/121 (4%)
Query 20 RIVCTVFIETAVVATMFVALLGLSTISSKADDI----DWDAIAQCESGGNWAANTGNGLY 75
R +C +F+++AVV+ + A + LST + A+ + +WDA+AQCESG NW ANTGNG Y
Sbjct 11 RKLCKLFVKSAVVSGIVTASMALSTSTGMANAVPREPNWDAVAQCESGRNWRANTGNGFY 70
Query 76 GGLQISQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCSQGDAPLGSLT 135
GGLQ W GGVG+PA AS +QQI VA+ ++ QG AWPKC + S D P+ +
Sbjct 71 GGLQFKPTIWARYGGVGNPAGASREQQITVANRVLADQGLDAWPKCGAAS--DLPITLWS 128
Query 136 H 136
H
Sbjct 129 H 129
>gi|226305719|ref|YP_002765679.1| resuscitation-promoting factor [Rhodococcus erythropolis PR4]
gi|226184836|dbj|BAH32940.1| putative resuscitation-promoting factor [Rhodococcus erythropolis
PR4]
Length=184
Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 54/101 (54%), Positives = 69/101 (69%), Gaps = 0/101 (0%)
Query 21 IVCTVFIETAVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQI 80
I F AV + L +ST ++ A +WD +AQCESGG+W NTGNG YGGLQ
Sbjct 6 ISKRAFGTLAVAGALVAVPLTMSTGTASAATHNWDGVAQCESGGDWNINTGNGYYGGLQF 65
Query 81 SQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKC 121
SQ+TW +NGG GSPA AS ++QI VA+N +++QGPGAWP C
Sbjct 66 SQSTWTANGGTGSPANASKEEQIRVAENTLQSQGPGAWPVC 106
>gi|229490962|ref|ZP_04384795.1| secreted protein [Rhodococcus erythropolis SK121]
gi|229322078|gb|EEN87866.1| secreted protein [Rhodococcus erythropolis SK121]
Length=184
Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 54/101 (54%), Positives = 69/101 (69%), Gaps = 0/101 (0%)
Query 21 IVCTVFIETAVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQI 80
I F AV + L +ST ++ A +WD +AQCESGG+W NTGNG YGGLQ
Sbjct 6 ISKRAFGTLAVAGALVAVPLTMSTGTASAATHNWDGVAQCESGGDWNINTGNGYYGGLQF 65
Query 81 SQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKC 121
SQ+TW +NGG GSPA AS ++QI VA+N +++QGPGAWP C
Sbjct 66 SQSTWTANGGTGSPANASKEEQIRVAENTLQSQGPGAWPVC 106
>gi|111023353|ref|YP_706325.1| hypothetical protein RHA1_ro06390 [Rhodococcus jostii RHA1]
gi|110822883|gb|ABG98167.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=184
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/92 (57%), Positives = 67/92 (73%), Gaps = 0/92 (0%)
Query 30 AVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNG 89
AV + LGLST ++ A +WD +AQCESGGNW NTGNG YGGLQ SQ+TW++NG
Sbjct 15 AVTGAVVAVPLGLSTGTASAASHNWDGVAQCESGGNWGINTGNGYYGGLQFSQSTWEANG 74
Query 90 GVGSPAAASPQQQIEVADNIMKTQGPGAWPKC 121
G GS ++AS +Q+ VA+N++ TQG GAWP C
Sbjct 75 GTGSASSASKAEQVRVAENVLATQGQGAWPVC 106
>gi|120404916|ref|YP_954745.1| transglycosylase domain-containing protein [Mycobacterium vanbaalenii
PYR-1]
gi|119957734|gb|ABM14739.1| Transglycosylase domain protein [Mycobacterium vanbaalenii PYR-1]
Length=111
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/90 (58%), Positives = 68/90 (76%), Gaps = 1/90 (1%)
Query 32 VATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNGGV 91
VA M V + G++ ++ AD ++WDA+A CESGGNW+ NTGNG YGGLQ + TW SNGG
Sbjct 19 VAPMAV-VTGVAAGTANADSVNWDAVAACESGGNWSINTGNGYYGGLQFTMGTWQSNGGS 77
Query 92 GSPAAASPQQQIEVADNIMKTQGPGAWPKC 121
GSP AS ++QI VA+N+++TQG GAWP C
Sbjct 78 GSPHHASREEQIRVANNVLQTQGIGAWPSC 107
>gi|296164903|ref|ZP_06847459.1| transglycosylase domain protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899745|gb|EFG79195.1| transglycosylase domain protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=149
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 74/118 (63%), Gaps = 3/118 (2%)
Query 20 RIVCTVFIETAVVATMFVALLGLST-ISSKADDIDWDAIAQCESGGNWAANTGNGLYGGL 78
+I+C +++ V A + ST + S A +WDAIAQCESGGNW ANTGNG YGGL
Sbjct 15 KILCKPLVKSLAVGGFVAASIASSTSVVSAAPTPNWDAIAQCESGGNWHANTGNGNYGGL 74
Query 79 QISQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCSQGDAPLGSLTH 136
Q TW GGVG+PAAAS +QQI VA+ + QG AWPKC + S P+G +H
Sbjct 75 QFKPGTWQRYGGVGNPAAASREQQIAVANRVFADQGVEAWPKCGAAS--GLPIGWYSH 130
>gi|302530572|ref|ZP_07282914.1| predicted protein [Streptomyces sp. AA4]
gi|302439467|gb|EFL11283.1| predicted protein [Streptomyces sp. AA4]
Length=208
Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 50/82 (61%), Positives = 61/82 (75%), Gaps = 0/82 (0%)
Query 42 LSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNGGVGSPAAASPQQ 101
L+ ++ A +WDAIAQCESGGNW NTGNG YGGLQ +Q+TW + GG GSP AS +Q
Sbjct 31 LAIAATPASATNWDAIAQCESGGNWNTNTGNGYYGGLQFTQSTWKAYGGTGSPQGASREQ 90
Query 102 QIEVADNIMKTQGPGAWPKCSS 123
QI VA+ +M+ QGPGAWP CS
Sbjct 91 QIAVAERVMQGQGPGAWPVCSK 112
>gi|41407705|ref|NP_960541.1| hypothetical protein MAP1607c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41396058|gb|AAS03924.1| hypothetical protein MAP_1607c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=170
Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 57/116 (50%), Positives = 73/116 (63%), Gaps = 3/116 (2%)
Query 22 VCTVFIETAVVATMFVALLGLST-ISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQI 80
+C + +++ VV A + ST + S +WDAIAQCESGGNW ANTGNG YGGLQ
Sbjct 38 LCKLLVKSVVVGGFVAASMASSTGVVSAEPTPNWDAIAQCESGGNWHANTGNGEYGGLQF 97
Query 81 SQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCSQGDAPLGSLTH 136
ATW GGVG+PAAAS +QQI VA+ + +G WPKC +Q P+G +H
Sbjct 98 KPATWARYGGVGNPAAASREQQIAVANRVFAEEGVEPWPKCG--AQSGLPIGWYSH 151
>gi|54023902|ref|YP_118144.1| hypothetical protein nfa19340 [Nocardia farcinica IFM 10152]
gi|54015410|dbj|BAD56780.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=111
Score = 110 bits (274), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/87 (59%), Positives = 64/87 (74%), Gaps = 1/87 (1%)
Query 36 FVAL-LGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNGGVGSP 94
FVA+ +S+ ++ A DWDA+AQCESGGNW NTGNG YGGLQ S +TW +NGG G
Sbjct 21 FVAVPFAVSSATASAYGHDWDAVAQCESGGNWGINTGNGYYGGLQFSHSTWVANGGSGYA 80
Query 95 AAASPQQQIEVADNIMKTQGPGAWPKC 121
AS ++QI VA+N++ TQGPGAWP C
Sbjct 81 HNASREEQIRVAENVLATQGPGAWPTC 107
>gi|226365861|ref|YP_002783644.1| resuscitation-promoting factor [Rhodococcus opacus B4]
gi|226244351|dbj|BAH54699.1| putative resuscitation-promoting factor [Rhodococcus opacus B4]
Length=110
Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 52/82 (64%), Positives = 64/82 (79%), Gaps = 0/82 (0%)
Query 40 LGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNGGVGSPAAASP 99
LGLST ++ A DWDA+A CES GNWAA+TGNG GGLQ + +TW +NGG GSPA AS
Sbjct 25 LGLSTGTASAASGDWDAVAACESSGNWAADTGNGFSGGLQFTDSTWAANGGSGSPANASR 84
Query 100 QQQIEVADNIMKTQGPGAWPKC 121
++QI VA+N++ TQGPGAWP C
Sbjct 85 EEQIRVAENVLATQGPGAWPVC 106
>gi|253799072|ref|YP_003032073.1| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis
KZN 1435]
gi|254550896|ref|ZP_05141343.1| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|289762035|ref|ZP_06521413.1| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis
GM 1503]
7 more sequence titles
Length=176
Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/105 (53%), Positives = 72/105 (69%), Gaps = 1/105 (0%)
Query 22 VCTVFIETAVVATMFVALLGLST-ISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQI 80
+ I++A+ A + A + LST ++ +WDA+AQCESGGNWAANTGNG YGGLQ
Sbjct 40 IAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQF 99
Query 81 SQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCS 125
ATW + GGVG+PAAAS +QQI VA+ ++ QG AWP C + S
Sbjct 100 KPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAAS 144
>gi|15609021|ref|NP_216400.1| resuscitation-promoting factor RpfC [Mycobacterium tuberculosis
H37Rv]
gi|31793075|ref|NP_855568.1| resuscitation-promoting factor RpfC [Mycobacterium bovis AF2122/97]
gi|121637788|ref|YP_978011.1| putative resuscitation-promoting factor rpfC [Mycobacterium bovis
BCG str. Pasteur 1173P2]
35 more sequence titles
Length=176
Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/105 (53%), Positives = 72/105 (69%), Gaps = 1/105 (0%)
Query 22 VCTVFIETAVVATMFVALLGLST-ISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQI 80
+ I++A+ A + A + LST ++ +WDA+AQCESGGNWAANTGNG YGGLQ
Sbjct 40 IAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQF 99
Query 81 SQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCS 125
ATW + GGVG+PAAAS +QQI VA+ ++ QG AWP C + S
Sbjct 100 KPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAAS 144
>gi|15841354|ref|NP_336391.1| hypothetical protein MT1932 [Mycobacterium tuberculosis CDC1551]
gi|254232061|ref|ZP_04925388.1| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis
C]
gi|13881587|gb|AAK46205.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
gi|124601120|gb|EAY60130.1| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis
C]
Length=188
Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/105 (53%), Positives = 72/105 (69%), Gaps = 1/105 (0%)
Query 22 VCTVFIETAVVATMFVALLGLST-ISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQI 80
+ I++A+ A + A + LST ++ +WDA+AQCESGGNWAANTGNG YGGLQ
Sbjct 52 IAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQF 111
Query 81 SQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCS 125
ATW + GGVG+PAAAS +QQI VA+ ++ QG AWP C + S
Sbjct 112 KPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAAS 156
>gi|340626892|ref|YP_004745344.1| putative resuscitation-promoting factor RPFC [Mycobacterium canettii
CIPT 140010059]
gi|340005082|emb|CCC44231.1| putative resuscitation-promoting factor RPFC [Mycobacterium canettii
CIPT 140010059]
Length=176
Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/105 (53%), Positives = 72/105 (69%), Gaps = 1/105 (0%)
Query 22 VCTVFIETAVVATMFVALLGLST-ISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQI 80
+ I++A+ A + A + LST ++ +WDA+AQCESGGNWAANTGNG YGGLQ
Sbjct 40 IAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQF 99
Query 81 SQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCS 125
ATW + GGVG+PAAAS +QQI VA+ ++ QG AWP C + S
Sbjct 100 KPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAAS 144
>gi|333990096|ref|YP_004522710.1| resuscitation-promoting factor-like protein [Mycobacterium sp.
JDM601]
gi|333486064|gb|AEF35456.1| resuscitation-promoting factor-like protein [Mycobacterium sp.
JDM601]
Length=108
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/92 (53%), Positives = 65/92 (71%), Gaps = 0/92 (0%)
Query 30 AVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNG 89
A+ + + LS +++AD ++WDAIA CESGGNW+ NTGNG YGGLQ + TW +NG
Sbjct 13 AIAGALITGAVALSDATARADSVNWDAIAACESGGNWSINTGNGYYGGLQFNAGTWRANG 72
Query 90 GVGSPAAASPQQQIEVADNIMKTQGPGAWPKC 121
G G P AS +QI VA+N++++QG GAWP C
Sbjct 73 GSGMPHNASRSEQIRVAENVLRSQGIGAWPVC 104
>gi|289554342|ref|ZP_06443552.1| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis
KZN 605]
gi|289438974|gb|EFD21467.1| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis
KZN 605]
Length=181
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/105 (53%), Positives = 72/105 (69%), Gaps = 1/105 (0%)
Query 22 VCTVFIETAVVATMFVALLGLST-ISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQI 80
+ I++A+ A + A + LST ++ +WDA+AQCESGGNWAANTGNG YGGLQ
Sbjct 45 IAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQF 104
Query 81 SQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCS 125
ATW + GGVG+PAAAS +QQI VA+ ++ QG AWP C + S
Sbjct 105 KPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAAS 149
>gi|336457545|gb|EGO36551.1| transglycosylase-like protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=136
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/116 (50%), Positives = 73/116 (63%), Gaps = 3/116 (2%)
Query 22 VCTVFIETAVVATMFVALLGLST-ISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQI 80
+C + +++ VV A + ST + S +WDAIAQCESGGNW ANTGNG YGGLQ
Sbjct 4 LCKLLVKSVVVGGFVAASMASSTGVVSAEPTPNWDAIAQCESGGNWHANTGNGEYGGLQF 63
Query 81 SQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCSQGDAPLGSLTH 136
ATW GGVG+PAAAS +QQI VA+ + +G WPKC +Q P+G +H
Sbjct 64 KPATWARYGGVGNPAAASREQQIAVANRVFAEEGVEPWPKCG--AQSGLPIGWYSH 117
>gi|256379283|ref|YP_003102943.1| transglycosylase domain-containing protein [Actinosynnema mirum
DSM 43827]
gi|255923586|gb|ACU39097.1| Transglycosylase domain protein [Actinosynnema mirum DSM 43827]
Length=205
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/108 (53%), Positives = 73/108 (68%), Gaps = 2/108 (1%)
Query 15 RDRCARIVCTVFIETAVVATMFVAL-LGLSTISSKADDIDWDAIAQCESGGNWAANTGNG 73
RD V T + AV+ + AL LG +T +S A DWDAIA+CESGGNW+ NTGNG
Sbjct 5 RDERRSRVLTRLVACAVMGLISGALALGTATTAS-AQGADWDAIARCESGGNWSINTGNG 63
Query 74 LYGGLQISQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKC 121
YGGLQ + TW +NGG G P AS ++QI VA+N++++QG GAWP C
Sbjct 64 YYGGLQFNPGTWAANGGSGMPHQASREEQIRVAENVLRSQGIGAWPHC 111
>gi|343924791|ref|ZP_08764330.1| putative resuscitation-promoting factor [Gordonia alkanivorans
NBRC 16433]
gi|343765298|dbj|GAA11256.1| putative resuscitation-promoting factor [Gordonia alkanivorans
NBRC 16433]
Length=84
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/69 (69%), Positives = 60/69 (87%), Gaps = 0/69 (0%)
Query 53 DWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNGGVGSPAAASPQQQIEVADNIMKT 112
+WDA+AQCESGG+W+ NTGNG YGGLQ SQ+TW++NGG G+PA AS ++QI VA+N++ T
Sbjct 12 NWDAVAQCESGGDWSINTGNGYYGGLQFSQSTWEANGGSGNPANASREEQIRVAENVLAT 71
Query 113 QGPGAWPKC 121
QGPGAWP C
Sbjct 72 QGPGAWPTC 80
>gi|323719626|gb|EGB28749.1| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis
CDC1551A]
Length=143
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/105 (53%), Positives = 72/105 (69%), Gaps = 1/105 (0%)
Query 22 VCTVFIETAVVATMFVALLGLST-ISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQI 80
+ I++A+ A + A + LST ++ +WDA+AQCESGGNWAANTGNG YGGLQ
Sbjct 7 IAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQF 66
Query 81 SQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCS 125
ATW + GGVG+PAAAS +QQI VA+ ++ QG AWP C + S
Sbjct 67 KPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAAS 111
>gi|308231968|ref|ZP_07414442.2| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis
SUMu001]
gi|308369549|ref|ZP_07418224.2| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis
SUMu002]
gi|308370848|ref|ZP_07422950.2| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis
SUMu003]
23 more sequence titles
Length=140
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/105 (53%), Positives = 72/105 (69%), Gaps = 1/105 (0%)
Query 22 VCTVFIETAVVATMFVALLGLST-ISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQI 80
+ I++A+ A + A + LST ++ +WDA+AQCESGGNWAANTGNG YGGLQ
Sbjct 4 IAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQF 63
Query 81 SQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCS 125
ATW + GGVG+PAAAS +QQI VA+ ++ QG AWP C + S
Sbjct 64 KPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAAS 108
>gi|326383331|ref|ZP_08205019.1| transglycosylase domain-containing protein [Gordonia neofelifaecis
NRRL B-59395]
gi|326198081|gb|EGD55267.1| transglycosylase domain-containing protein [Gordonia neofelifaecis
NRRL B-59395]
Length=107
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/93 (56%), Positives = 69/93 (75%), Gaps = 1/93 (1%)
Query 30 AVVATMFVALLGLSTISSKADD-IDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSN 88
A+ + +A L L+ + AD +WDA+AQCESGG+W+ NTGNG YGGLQ SQ+TW++N
Sbjct 11 AIAGALTIAPLTLAAGVASADTGHNWDAVAQCESGGDWSINTGNGYYGGLQFSQSTWEAN 70
Query 89 GGVGSPAAASPQQQIEVADNIMKTQGPGAWPKC 121
GG GS AS ++QI VA+N++ TQGPGAWP C
Sbjct 71 GGSGSANNASREEQIRVAENVLATQGPGAWPVC 103
>gi|118470954|ref|YP_888906.1| resuscitation-promoting factor [Mycobacterium smegmatis str.
MC2 155]
gi|118172241|gb|ABK73137.1| resuscitation-promoting factor [Mycobacterium smegmatis str.
MC2 155]
Length=107
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/91 (55%), Positives = 64/91 (71%), Gaps = 0/91 (0%)
Query 31 VVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNGG 90
V + VA + L ++ AD ++WDAIA CESGGNW+ NTGNG YGGLQ + TW S+GG
Sbjct 13 VAGALAVAPVALGAGTANADSVNWDAIASCESGGNWSINTGNGYYGGLQFNLGTWRSHGG 72
Query 91 VGSPAAASPQQQIEVADNIMKTQGPGAWPKC 121
G P AS +QI VA+N+++TQG GAWP C
Sbjct 73 AGMPHQASRSEQIRVAENVLRTQGIGAWPVC 103
>gi|312140603|ref|YP_004007939.1| resuscitation-promoting factor rpfd [Rhodococcus equi 103S]
gi|325675770|ref|ZP_08155454.1| transglycosylase family protein [Rhodococcus equi ATCC 33707]
gi|311889942|emb|CBH49259.1| putative resuscitation-promoting factor rpfD [Rhodococcus equi
103S]
gi|325553741|gb|EGD23419.1| transglycosylase family protein [Rhodococcus equi ATCC 33707]
Length=183
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 46/69 (67%), Positives = 55/69 (80%), Gaps = 0/69 (0%)
Query 53 DWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNGGVGSPAAASPQQQIEVADNIMKT 112
+WD +AQCESGGNW NTGNG YGGLQ SQ+TW +NGG GSP AS ++QI VA+N + +
Sbjct 38 NWDGVAQCESGGNWGINTGNGYYGGLQFSQSTWTANGGTGSPHTASKEEQIRVAENTLAS 97
Query 113 QGPGAWPKC 121
QGPGAWP C
Sbjct 98 QGPGAWPTC 106
>gi|111023354|ref|YP_706326.1| hypothetical protein RHA1_ro06391 [Rhodococcus jostii RHA1]
gi|110822884|gb|ABG98168.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=110
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/101 (54%), Positives = 68/101 (68%), Gaps = 0/101 (0%)
Query 21 IVCTVFIETAVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQI 80
IV A+ + LGLST ++ A DWDA+A CES GNW A+TGNG GGLQ
Sbjct 6 IVKRTMGAIALTGAVIGVPLGLSTGTASAASGDWDAVAACESSGNWGADTGNGFSGGLQF 65
Query 81 SQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKC 121
+ +TW +NGG GSPA AS ++QI VA+N++ TQGPGAWP C
Sbjct 66 TDSTWAANGGSGSPANASREEQIRVAENVLATQGPGAWPVC 106
>gi|54026495|ref|YP_120737.1| hypothetical protein nfa45220 [Nocardia farcinica IFM 10152]
gi|54018003|dbj|BAD59373.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=183
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/107 (52%), Positives = 69/107 (65%), Gaps = 4/107 (3%)
Query 15 RDRCARIVCTVFIETAVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGL 74
R R + V A+VA F GLST ++ A +WD +AQCESGGNW NTGNG
Sbjct 5 RKISTRALGFVAATGALVAIPF----GLSTATASAATHNWDGVAQCESGGNWGINTGNGY 60
Query 75 YGGLQISQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKC 121
YGGLQ S +TW +NGG G AS ++QI VA+N+++TQG GAWP C
Sbjct 61 YGGLQFSHSTWVANGGTGYAHQASKEEQIRVAENVLQTQGVGAWPVC 107
>gi|315443664|ref|YP_004076543.1| transglycosylase-like protein [Mycobacterium sp. Spyr1]
gi|315261967|gb|ADT98708.1| transglycosylase-like protein [Mycobacterium sp. Spyr1]
Length=125
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/76 (62%), Positives = 60/76 (79%), Gaps = 0/76 (0%)
Query 46 SSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNGGVGSPAAASPQQQIEV 105
++ AD ++WDA+A CESGGNW+ NTGNG YGGLQ + TW SNGG GSP AS ++QI V
Sbjct 46 TANADGVNWDAVAACESGGNWSINTGNGYYGGLQFTMGTWQSNGGSGSPHHASREEQIRV 105
Query 106 ADNIMKTQGPGAWPKC 121
A+N+++TQG GAWP C
Sbjct 106 ANNVLQTQGIGAWPTC 121
>gi|108800529|ref|YP_640726.1| transglycosylase-like protein [Mycobacterium sp. MCS]
gi|119869668|ref|YP_939620.1| transglycosylase domain-containing protein [Mycobacterium sp.
KMS]
gi|126436145|ref|YP_001071836.1| transglycosylase domain-containing protein [Mycobacterium sp.
JLS]
gi|108770948|gb|ABG09670.1| Transglycosylase-like protein [Mycobacterium sp. MCS]
gi|119695757|gb|ABL92830.1| Transglycosylase domain protein [Mycobacterium sp. KMS]
gi|126235945|gb|ABN99345.1| Transglycosylase domain protein [Mycobacterium sp. JLS]
Length=171
Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/92 (56%), Positives = 66/92 (72%), Gaps = 6/92 (6%)
Query 30 AVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNG 89
A+V T F S+ ++ AD ++WDAIAQCESGGNW+ NTGNG +GGLQ TW S+G
Sbjct 22 ALVPTFF------SSATASADSVNWDAIAQCESGGNWSTNTGNGYFGGLQFKPTTWSSHG 75
Query 90 GVGSPAAASPQQQIEVADNIMKTQGPGAWPKC 121
G G+PA AS +QI+VA+ ++ TQG AWPKC
Sbjct 76 GRGNPANASRSEQIQVAERVLATQGLKAWPKC 107
>gi|226359722|ref|YP_002777500.1| resuscitation-promoting factor [Rhodococcus opacus B4]
gi|226238207|dbj|BAH48555.1| putative resuscitation-promoting factor [Rhodococcus opacus B4]
Length=236
Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/92 (53%), Positives = 63/92 (69%), Gaps = 0/92 (0%)
Query 30 AVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNG 89
A++ LLGL ++ DWD +A+CESGG+W +TGNG YGGLQ + TW +NG
Sbjct 27 ALIGAAATVLLGLGAGTALGAPHDWDEVAECESGGDWTTDTGNGFYGGLQFTPETWKANG 86
Query 90 GVGSPAAASPQQQIEVADNIMKTQGPGAWPKC 121
G G P+ AS +QI VA+N++KTQGPGAWP C
Sbjct 87 GKGDPSEASEAEQIRVAENVLKTQGPGAWPVC 118
>gi|145223206|ref|YP_001133884.1| transglycosylase domain-containing protein [Mycobacterium gilvum
PYR-GCK]
gi|145215692|gb|ABP45096.1| Transglycosylase domain protein [Mycobacterium gilvum PYR-GCK]
Length=171
Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 47/76 (62%), Positives = 60/76 (79%), Gaps = 0/76 (0%)
Query 46 SSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNGGVGSPAAASPQQQIEV 105
++ AD ++WDA+A CESGGNW+ NTGNG YGGLQ + TW SNGG GSP AS ++QI V
Sbjct 92 TANADGVNWDAVAACESGGNWSINTGNGYYGGLQFTMGTWQSNGGSGSPHHASREEQIRV 151
Query 106 ADNIMKTQGPGAWPKC 121
A+N+++TQG GAWP C
Sbjct 152 ANNVLQTQGIGAWPTC 167
>gi|342859533|ref|ZP_08716186.1| hypothetical protein MCOL_11658 [Mycobacterium colombiense CECT
3035]
gi|342132665|gb|EGT85885.1| hypothetical protein MCOL_11658 [Mycobacterium colombiense CECT
3035]
Length=145
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/118 (47%), Positives = 73/118 (62%), Gaps = 3/118 (2%)
Query 20 RIVCTVFIETAVVATMFVALLGLST-ISSKADDIDWDAIAQCESGGNWAANTGNGLYGGL 78
+ +C + +++ V A + S + S +WDAIAQCESGGNW ANTGNG YGGL
Sbjct 11 KYLCKLLVKSVAVGGFIAASMASSAGVVSAEPTPNWDAIAQCESGGNWHANTGNGEYGGL 70
Query 79 QISQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCSQGDAPLGSLTH 136
Q +TW GGVG+PAAAS +QQI VA+ + +G AWPKC + S P+G +H
Sbjct 71 QFKPSTWARYGGVGNPAAASREQQIAVANRVFAEEGVEAWPKCGANS--GLPIGWYSH 126
>gi|226365860|ref|YP_002783643.1| resuscitation-promoting factor [Rhodococcus opacus B4]
gi|226244350|dbj|BAH54698.1| putative resuscitation-promoting factor [Rhodococcus opacus B4]
Length=184
Score = 107 bits (266), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 50/92 (55%), Positives = 64/92 (70%), Gaps = 0/92 (0%)
Query 30 AVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNG 89
AV + LGLS ++ A +WD +A CESGGNW NTGNG YGGLQ SQ+TW++NG
Sbjct 15 AVTGAVVAVPLGLSAGTASAASHNWDGVAACESGGNWGINTGNGYYGGLQFSQSTWEANG 74
Query 90 GVGSPAAASPQQQIEVADNIMKTQGPGAWPKC 121
G GS + AS +Q+ VA+N++ TQG GAWP C
Sbjct 75 GSGSASNASKAEQVRVAENVLATQGQGAWPVC 106
>gi|108800530|ref|YP_640727.1| transglycosylase-like protein [Mycobacterium sp. MCS]
gi|119869669|ref|YP_939621.1| transglycosylase domain-containing protein [Mycobacterium sp.
KMS]
gi|126436146|ref|YP_001071837.1| transglycosylase domain-containing protein [Mycobacterium sp.
JLS]
gi|108770949|gb|ABG09671.1| Transglycosylase-like protein [Mycobacterium sp. MCS]
gi|119695758|gb|ABL92831.1| Transglycosylase domain protein [Mycobacterium sp. KMS]
gi|126235946|gb|ABN99346.1| Transglycosylase domain protein [Mycobacterium sp. JLS]
Length=118
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/114 (49%), Positives = 74/114 (65%), Gaps = 2/114 (1%)
Query 9 AGAGRPRDRCARIVCTVFIETAVVATMFVALLGLSTISSKADD-IDWDAIAQCESGGNWA 67
A A R + I T+ + T + VA + L ++ AD ++WDA+A CESGGNW+
Sbjct 2 ARAWRKEEVLKNIRKTLGLAT-FAGALAVAPMALGAGTANADSGVNWDAVAACESGGNWS 60
Query 68 ANTGNGLYGGLQISQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKC 121
NTGNG YGGLQ + TW SNGG GSP AS ++QI VA+N++++QG GAWP C
Sbjct 61 INTGNGYYGGLQFTMGTWQSNGGSGSPHNASREEQIRVAENVLQSQGIGAWPTC 114
>gi|108799874|ref|YP_640071.1| transglycosylase-like protein [Mycobacterium sp. MCS]
gi|108770293|gb|ABG09015.1| Transglycosylase-like protein [Mycobacterium sp. MCS]
Length=181
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/94 (55%), Positives = 64/94 (69%), Gaps = 4/94 (4%)
Query 32 VATMFVAL----LGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDS 87
VA VAL + ++T + A ++WDAIAQCES GNWA NTGNG YGGLQ ATW
Sbjct 36 VALTAVALSTTSIAVATPKANASTVNWDAIAQCESSGNWAINTGNGFYGGLQFLPATWRE 95
Query 88 NGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKC 121
+GGVGSP A + QI +A+ +++TQG GAWP C
Sbjct 96 HGGVGSPDKAPREYQIAIAERVLRTQGIGAWPVC 129
>gi|315441569|ref|YP_004074446.1| transglycosylase-like protein [Mycobacterium sp. Spyr1]
gi|315265224|gb|ADU01965.1| transglycosylase-like protein [Mycobacterium sp. Spyr1]
Length=153
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 67/102 (66%), Gaps = 0/102 (0%)
Query 20 RIVCTVFIETAVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQ 79
R VC AV + V + IS+ A+ IDWDAIAQCESGG+W+ +TGNG +GGLQ
Sbjct 2 RAVCRFLTAIAVSGALAVTAHAVDPISAYANAIDWDAIAQCESGGDWSISTGNGYFGGLQ 61
Query 80 ISQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKC 121
+TW +GG G+PA A+ +QI VA+ ++ TQG GAWP C
Sbjct 62 FQPSTWAEHGGRGNPANAARTEQIRVAERVIGTQGLGAWPVC 103
>gi|119868984|ref|YP_938936.1| transglycosylase domain-containing protein [Mycobacterium sp.
KMS]
gi|126435517|ref|YP_001071208.1| transglycosylase domain-containing protein [Mycobacterium sp.
JLS]
gi|119695073|gb|ABL92146.1| Transglycosylase domain protein [Mycobacterium sp. KMS]
gi|126235317|gb|ABN98717.1| Transglycosylase domain protein [Mycobacterium sp. JLS]
Length=152
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/94 (55%), Positives = 64/94 (69%), Gaps = 4/94 (4%)
Query 32 VATMFVAL----LGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDS 87
VA VAL + ++T + A ++WDAIAQCES GNWA NTGNG YGGLQ ATW
Sbjct 7 VALTAVALSTTSIAVATPKANASTVNWDAIAQCESSGNWAINTGNGFYGGLQFLPATWRE 66
Query 88 NGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKC 121
+GGVGSP A + QI +A+ +++TQG GAWP C
Sbjct 67 HGGVGSPDKAPREYQIAIAERVLRTQGIGAWPVC 100
>gi|256374622|ref|YP_003098282.1| transglycosylase domain-containing protein [Actinosynnema mirum
DSM 43827]
gi|255918925|gb|ACU34436.1| Transglycosylase domain protein [Actinosynnema mirum DSM 43827]
Length=224
Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/113 (49%), Positives = 72/113 (64%), Gaps = 3/113 (2%)
Query 12 GRPRDRCARIVCTV--FIETAVVATMFVALLGLS-TISSKADDIDWDAIAQCESGGNWAA 68
G+ R + R V + AV + A L ++ T S++ ++WDA+A CESGGNW+
Sbjct 6 GKHRFQSLRANAAVRGIAKVAVAGVIVGAPLAMAGTASAQGSGVNWDAVAACESGGNWSI 65
Query 69 NTGNGLYGGLQISQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKC 121
NTGNG YGGLQ S +TW S+GG G AS +QI VA+N+MKTQG GAWP C
Sbjct 66 NTGNGYYGGLQFSPSTWSSHGGSGMANQASRAEQIRVAENVMKTQGIGAWPVC 118
Lambda K H
0.315 0.131 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131222683000
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40