BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2389c

Length=154
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609526|ref|NP_216905.1|  resuscitation-promoting factor RpfD...   311    2e-83
gi|167968732|ref|ZP_02551009.1|  resuscitation-promoting factor r...   260    4e-68
gi|240169939|ref|ZP_04748598.1|  putative resuscitation-promoting...   165    2e-39
gi|296393005|ref|YP_003657889.1|  transglycosylase [Segniliparus ...   133    8e-30
gi|169631158|ref|YP_001704807.1|  hypothetical protein MAB_4080c ...   124    3e-27
gi|183982778|ref|YP_001851069.1|  resuscitation-promoting factor-...   124    4e-27
gi|333990161|ref|YP_004522775.1|  resuscitation-promoting factor-...   123    7e-27
gi|118618374|ref|YP_906706.1|  resuscitation-promoting factor-lik...   123    8e-27
gi|262203254|ref|YP_003274462.1|  transglycosylase [Gordonia bron...   120    6e-26
gi|240170530|ref|ZP_04749189.1|  resuscitation-promoting factor-l...   120    6e-26
gi|120404915|ref|YP_954744.1|  transglycosylase domain-containing...   120    7e-26
gi|118469017|ref|YP_888904.1|  hypothetical protein MSMEG_4640 [M...   118    3e-25
gi|145223207|ref|YP_001133885.1|  transglycosylase domain-contain...   116    1e-24
gi|15828097|ref|NP_302360.1|  hypothetical protein ML2030 [Mycoba...   115    3e-24
gi|226305719|ref|YP_002765679.1|  resuscitation-promoting factor ...   114    6e-24
gi|229490962|ref|ZP_04384795.1|  secreted protein [Rhodococcus er...   114    7e-24
gi|111023353|ref|YP_706325.1|  hypothetical protein RHA1_ro06390 ...   112    1e-23
gi|120404916|ref|YP_954745.1|  transglycosylase domain-containing...   112    2e-23
gi|296164903|ref|ZP_06847459.1|  transglycosylase domain protein ...   111    3e-23
gi|302530572|ref|ZP_07282914.1|  predicted protein [Streptomyces ...   110    6e-23
gi|41407705|ref|NP_960541.1|  hypothetical protein MAP1607c [Myco...   110    6e-23
gi|54023902|ref|YP_118144.1|  hypothetical protein nfa19340 [Noca...   110    8e-23
gi|226365861|ref|YP_002783644.1|  resuscitation-promoting factor ...   110    9e-23
gi|253799072|ref|YP_003032073.1|  resuscitation-promoting factor ...   110    9e-23
gi|15609021|ref|NP_216400.1|  resuscitation-promoting factor RpfC...   110    9e-23
gi|15841354|ref|NP_336391.1|  hypothetical protein MT1932 [Mycoba...   110    9e-23
gi|340626892|ref|YP_004745344.1|  putative resuscitation-promotin...   110    9e-23
gi|333990096|ref|YP_004522710.1|  resuscitation-promoting factor-...   110    1e-22
gi|289554342|ref|ZP_06443552.1|  resuscitation-promoting factor r...   110    1e-22
gi|336457545|gb|EGO36551.1|  transglycosylase-like protein [Mycob...   109    1e-22
gi|256379283|ref|YP_003102943.1|  transglycosylase domain-contain...   109    1e-22
gi|343924791|ref|ZP_08764330.1|  putative resuscitation-promoting...   109    1e-22
gi|323719626|gb|EGB28749.1|  resuscitation-promoting factor rpfC ...   109    1e-22
gi|308231968|ref|ZP_07414442.2|  resuscitation-promoting factor r...   109    2e-22
gi|326383331|ref|ZP_08205019.1|  transglycosylase domain-containi...   108    2e-22
gi|118470954|ref|YP_888906.1|  resuscitation-promoting factor [My...   108    3e-22
gi|312140603|ref|YP_004007939.1|  resuscitation-promoting factor ...   108    3e-22
gi|111023354|ref|YP_706326.1|  hypothetical protein RHA1_ro06391 ...   108    3e-22
gi|54026495|ref|YP_120737.1|  hypothetical protein nfa45220 [Noca...   108    3e-22
gi|315443664|ref|YP_004076543.1|  transglycosylase-like protein [...   108    3e-22
gi|108800529|ref|YP_640726.1|  transglycosylase-like protein [Myc...   107    4e-22
gi|226359722|ref|YP_002777500.1|  resuscitation-promoting factor ...   107    4e-22
gi|145223206|ref|YP_001133884.1|  transglycosylase domain-contain...   107    5e-22
gi|342859533|ref|ZP_08716186.1|  hypothetical protein MCOL_11658 ...   107    6e-22
gi|226365860|ref|YP_002783643.1|  resuscitation-promoting factor ...   107    9e-22
gi|108800530|ref|YP_640727.1|  transglycosylase-like protein [Myc...   106    1e-21
gi|108799874|ref|YP_640071.1|  transglycosylase-like protein [Myc...   106    1e-21
gi|315441569|ref|YP_004074446.1|  transglycosylase-like protein [...   105    2e-21
gi|119868984|ref|YP_938936.1|  transglycosylase domain-containing...   105    2e-21
gi|256374622|ref|YP_003098282.1|  transglycosylase domain-contain...   104    5e-21


>gi|15609526|ref|NP_216905.1| resuscitation-promoting factor RpfD [Mycobacterium tuberculosis 
H37Rv]
 gi|15841902|ref|NP_336939.1| hypothetical protein MT2458 [Mycobacterium tuberculosis CDC1551]
 gi|31793566|ref|NP_856059.1| resuscitation-promoting factor RpfD [Mycobacterium bovis AF2122/97]
 49 more sequence titles
 Length=154

 Score =  311 bits (797),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 154/154 (100%), Positives = 154/154 (100%), Gaps = 0/154 (0%)

Query  1    MTPGLLTTAGAGRPRDRCARIVCTVFIETAVVATMFVALLGLSTISSKADDIDWDAIAQC  60
            MTPGLLTTAGAGRPRDRCARIVCTVFIETAVVATMFVALLGLSTISSKADDIDWDAIAQC
Sbjct  1    MTPGLLTTAGAGRPRDRCARIVCTVFIETAVVATMFVALLGLSTISSKADDIDWDAIAQC  60

Query  61   ESGGNWAANTGNGLYGGLQISQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPK  120
            ESGGNWAANTGNGLYGGLQISQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPK
Sbjct  61   ESGGNWAANTGNGLYGGLQISQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPK  120

Query  121  CSSCSQGDAPLGSLTHILTFLAAETGGCSGSRDD  154
            CSSCSQGDAPLGSLTHILTFLAAETGGCSGSRDD
Sbjct  121  CSSCSQGDAPLGSLTHILTFLAAETGGCSGSRDD  154


>gi|167968732|ref|ZP_02551009.1| resuscitation-promoting factor rpfD [Mycobacterium tuberculosis 
H37Ra]
 gi|254551437|ref|ZP_05141884.1| resuscitation-promoting factor rpfD [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|308232117|ref|ZP_07664005.1| resuscitation-promoting factor rpfD [Mycobacterium tuberculosis 
SUMu001]
 26 more sequence titles
 Length=130

 Score =  260 bits (665),  Expect = 4e-68, Method: Compositional matrix adjust.
 Identities = 129/130 (99%), Positives = 130/130 (100%), Gaps = 0/130 (0%)

Query  25   VFIETAVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQAT  84
            +FIETAVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQAT
Sbjct  1    MFIETAVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQAT  60

Query  85   WDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCSQGDAPLGSLTHILTFLAAE  144
            WDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCSQGDAPLGSLTHILTFLAAE
Sbjct  61   WDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCSQGDAPLGSLTHILTFLAAE  120

Query  145  TGGCSGSRDD  154
            TGGCSGSRDD
Sbjct  121  TGGCSGSRDD  130


>gi|240169939|ref|ZP_04748598.1| putative resuscitation-promoting factor [Mycobacterium kansasii 
ATCC 12478]
Length=150

 Score =  165 bits (418),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 82/130 (64%), Positives = 97/130 (75%), Gaps = 0/130 (0%)

Query  25   VFIETAVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQAT  84
            VF   A     ++    +S  SS AD ++W+AIAQCESGGNWAA+TGNG YGGLQISQ T
Sbjct  21   VFAVAAAAGAAWMLGPAVSPGSSHADSVNWEAIAQCESGGNWAADTGNGFYGGLQISQPT  80

Query  85   WDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCSQGDAPLGSLTHILTFLAAE  144
            W  NGG G P+AASP  QI+V + IM TQGPGAWP+CSSCS+GD P+GSLTHILT L A 
Sbjct  81   WQGNGGSGLPSAASPDGQIDVGERIMTTQGPGAWPRCSSCSRGDGPVGSLTHILTALMAA  140

Query  145  TGGCSGSRDD  154
             GGC+G+ DD
Sbjct  141  NGGCTGNTDD  150


>gi|296393005|ref|YP_003657889.1| transglycosylase [Segniliparus rotundus DSM 44985]
 gi|296180152|gb|ADG97058.1| Transglycosylase domain protein [Segniliparus rotundus DSM 44985]
Length=142

 Score =  133 bits (335),  Expect = 8e-30, Method: Compositional matrix adjust.
 Identities = 66/90 (74%), Positives = 76/90 (85%), Gaps = 1/90 (1%)

Query  52   IDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNGGVGSPAAASPQQQIEVADNIMK  111
            +DWDAIAQCESGGNWAA+TGNG YGGLQIS +TW +NGGVGSPAAASPQ+QI VAD IM 
Sbjct  38   VDWDAIAQCESGGNWAADTGNGFYGGLQISASTWRANGGVGSPAAASPQEQIAVADRIMA  97

Query  112  TQGPGAWPKCSSCSQGDAPLGSLTHILTFL  141
             QGP AWPKC + S G+A +GS+ +ILT L
Sbjct  98   AQGPSAWPKC-AMSTGNAAVGSIPNILTQL  126


>gi|169631158|ref|YP_001704807.1| hypothetical protein MAB_4080c [Mycobacterium abscessus ATCC 
19977]
 gi|169243125|emb|CAM64153.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=146

 Score =  124 bits (312),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 63/132 (48%), Positives = 87/132 (66%), Gaps = 14/132 (10%)

Query  15   RDRCARIVCTVFIETAVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGL  74
            RDR  R VC +F        +F+  L ++   + AD ++WDA+A+CESGGNW+ANTGNG 
Sbjct  8    RDR--RAVCLIF------TVLFMMSLSMTASVASADSMNWDAVAECESGGNWSANTGNGF  59

Query  75   YGGLQISQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCSQGD------  128
            YGGLQ   +TW ++GGVG+PA AS ++QI VA+++++TQGPGAWPKC     G       
Sbjct  60   YGGLQFKPSTWAAHGGVGNPAEASREEQIAVAEDVLRTQGPGAWPKCGGGGIGGGAGCQF  119

Query  129  APLGSLTHILTF  140
             P GS+  I+ F
Sbjct  120  VPGGSIFGIVNF  131


>gi|183982778|ref|YP_001851069.1| resuscitation-promoting factor-like protein [Mycobacterium marinum 
M]
 gi|183176104|gb|ACC41214.1| resuscitation-promoting factor-like protein [Mycobacterium marinum 
M]
Length=137

 Score =  124 bits (312),  Expect = 4e-27, Method: Compositional matrix adjust.
 Identities = 57/102 (56%), Positives = 76/102 (75%), Gaps = 0/102 (0%)

Query  22   VCTVFIETAVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQIS  81
            +     ++A+     VA + LST  ++AD ++W+A+AQCESGGNW+ANTGNG YGGLQ  
Sbjct  4    IAKPLTKSALAGGFVVASMSLSTGVAQADLMNWEAVAQCESGGNWSANTGNGAYGGLQFK  63

Query  82   QATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSS  123
            QATW+  GGVG+PA+AS QQQI +A+ ++  QGP AWPKCSS
Sbjct  64   QATWEEYGGVGNPASASKQQQIAIANRVLAGQGPAAWPKCSS  105


>gi|333990161|ref|YP_004522775.1| resuscitation-promoting factor-like protein [Mycobacterium sp. 
JDM601]
 gi|333486129|gb|AEF35521.1| resuscitation-promoting factor-like protein [Mycobacterium sp. 
JDM601]
Length=135

 Score =  123 bits (309),  Expect = 7e-27, Method: Compositional matrix adjust.
 Identities = 65/110 (60%), Positives = 82/110 (75%), Gaps = 6/110 (5%)

Query  44   TISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNGGVGSPAAASPQQQI  103
            T ++ A+ I+W+AIA CESGG+WAA++GNG YGGLQIS ATWD+NGGVG P+ AS QQQI
Sbjct  20   TAAAHAEPINWEAIANCESGGDWAADSGNGGYGGLQISAATWDANGGVGLPSDASRQQQI  79

Query  104  EVADNIMKTQGPGAWPKCSS------CSQGDAPLGSLTHILTFLAAETGG  147
             VA  IM ++GPGAWP C+S         G AP+GSLTH L+ L  ++GG
Sbjct  80   AVAKRIMASEGPGAWPACASRGAAATTGAGAAPVGSLTHYLSALFEDSGG  129


>gi|118618374|ref|YP_906706.1| resuscitation-promoting factor-like protein [Mycobacterium ulcerans 
Agy99]
 gi|118570484|gb|ABL05235.1| resuscitation-promoting factor-like protein [Mycobacterium ulcerans 
Agy99]
Length=146

 Score =  123 bits (309),  Expect = 8e-27, Method: Compositional matrix adjust.
 Identities = 56/103 (55%), Positives = 75/103 (73%), Gaps = 0/103 (0%)

Query  22   VCTVFIETAVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQIS  81
            +     ++A+     VA + LST  ++AD ++W+A+AQCESGGNW+ NTGNG YGGLQ  
Sbjct  13   IAKPLTKSALAGGFVVASMSLSTGVAQADLMNWEAVAQCESGGNWSVNTGNGAYGGLQFK  72

Query  82   QATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSC  124
            QATW+  GGVG+PA+AS QQQI +A+ ++  QGP AWPKCSS 
Sbjct  73   QATWEEYGGVGNPASASKQQQIAIANRVLAGQGPAAWPKCSSA  115


>gi|262203254|ref|YP_003274462.1| transglycosylase [Gordonia bronchialis DSM 43247]
 gi|262086601|gb|ACY22569.1| Transglycosylase domain protein [Gordonia bronchialis DSM 43247]
Length=106

 Score =  120 bits (301),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 55/92 (60%), Positives = 70/92 (77%), Gaps = 0/92 (0%)

Query  30   AVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNG  89
            AVV  +  A  GL   ++ AD  +WDA+AQCESGGNWA NTGNG YGGLQ +Q+TW++NG
Sbjct  11   AVVGALTAAPFGLLATTASADTHNWDAVAQCESGGNWAINTGNGYYGGLQFTQSTWEANG  70

Query  90   GVGSPAAASPQQQIEVADNIMKTQGPGAWPKC  121
            G GS + AS ++QI VA+N++ TQGPGAWP C
Sbjct  71   GSGSASNASREEQIRVAENVLATQGPGAWPVC  102


>gi|240170530|ref|ZP_04749189.1| resuscitation-promoting factor-like protein [Mycobacterium kansasii 
ATCC 12478]
Length=141

 Score =  120 bits (301),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 56/84 (67%), Positives = 66/84 (79%), Gaps = 0/84 (0%)

Query  40   LGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNGGVGSPAAASP  99
            + LST  + AD ++WDA+AQCESGGNW ANTGNG YGGLQ  QATWD  GGVG+PA AS 
Sbjct  25   MSLSTGIAHADVMNWDAVAQCESGGNWTANTGNGAYGGLQFKQATWDEYGGVGNPATASK  84

Query  100  QQQIEVADNIMKTQGPGAWPKCSS  123
            QQQI VA+ ++  QGP AWPKC+S
Sbjct  85   QQQIAVANRVLAGQGPAAWPKCAS  108


>gi|120404915|ref|YP_954744.1| transglycosylase domain-containing protein [Mycobacterium vanbaalenii 
PYR-1]
 gi|119957733|gb|ABM14738.1| Transglycosylase domain protein [Mycobacterium vanbaalenii PYR-1]
Length=170

 Score =  120 bits (301),  Expect = 7e-26, Method: Compositional matrix adjust.
 Identities = 55/104 (53%), Positives = 75/104 (73%), Gaps = 2/104 (1%)

Query  20   RIVCTVFIETAVVATMFVALLGL--STISSKADDIDWDAIAQCESGGNWAANTGNGLYGG  77
            ++V    +  A+   + V  + +  +T ++ AD ++WDAIAQCESGGNWA NTGNG +GG
Sbjct  5    KVVSKGLMAAAISGALAVVPMAMDGTTATAHADSVNWDAIAQCESGGNWAINTGNGHFGG  64

Query  78   LQISQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKC  121
            LQ  QATW +NGGVG+PAAA   +QI VA+N+++TQG  AWPKC
Sbjct  65   LQFKQATWSANGGVGNPAAAPRHEQIRVAENVLRTQGLKAWPKC  108


>gi|118469017|ref|YP_888904.1| hypothetical protein MSMEG_4640 [Mycobacterium smegmatis str. 
MC2 155]
 gi|118170304|gb|ABK71200.1| secreted protein [Mycobacterium smegmatis str. MC2 155]
Length=153

 Score =  118 bits (296),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 55/96 (58%), Positives = 72/96 (75%), Gaps = 0/96 (0%)

Query  26   FIETAVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATW  85
            F  TA+   + +  + LS  ++ AD ++WDAIA CESGGNW+ NTGNG YGGLQ  Q+TW
Sbjct  5    FGLTALAGALAMGPMVLSPATAAADSVNWDAIAACESGGNWSTNTGNGHYGGLQFKQSTW  64

Query  86   DSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKC  121
             ++GGVGSPA AS +QQI VA+N+++TQG  AWPKC
Sbjct  65   AAHGGVGSPATASREQQIAVAENVLRTQGLAAWPKC  100


>gi|145223207|ref|YP_001133885.1| transglycosylase domain-containing protein [Mycobacterium gilvum 
PYR-GCK]
 gi|315443665|ref|YP_004076544.1| transglycosylase-like protein [Mycobacterium sp. Spyr1]
 gi|145215693|gb|ABP45097.1| Transglycosylase domain protein [Mycobacterium gilvum PYR-GCK]
 gi|315261968|gb|ADT98709.1| transglycosylase-like protein [Mycobacterium sp. Spyr1]
Length=170

 Score =  116 bits (291),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 54/98 (56%), Positives = 70/98 (72%), Gaps = 2/98 (2%)

Query  26   FIETAVVATMFVALLGLS--TISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQA  83
             +  A+   + V  + L   T ++ AD ++WDAIAQCESGGNWA NTGNG +GGLQ  QA
Sbjct  11   LMAAAISGALAVVPMALDGGTATAHADSVNWDAIAQCESGGNWAINTGNGHFGGLQFKQA  70

Query  84   TWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKC  121
            TW +NGGVG+PA A   +QI VA+N+++TQG  AWPKC
Sbjct  71   TWSANGGVGNPARAPRHEQIRVAENVLRTQGIKAWPKC  108


>gi|15828097|ref|NP_302360.1| hypothetical protein ML2030 [Mycobacterium leprae TN]
 gi|221230574|ref|YP_002503990.1| hypothetical protein MLBr_02030 [Mycobacterium leprae Br4923]
 gi|13093651|emb|CAC30985.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219933681|emb|CAR72127.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=157

 Score =  115 bits (287),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 58/121 (48%), Positives = 79/121 (66%), Gaps = 6/121 (4%)

Query  20   RIVCTVFIETAVVATMFVALLGLSTISSKADDI----DWDAIAQCESGGNWAANTGNGLY  75
            R +C +F+++AVV+ +  A + LST +  A+ +    +WDA+AQCESG NW ANTGNG Y
Sbjct  11   RKLCKLFVKSAVVSGIVTASMALSTSTGMANAVPREPNWDAVAQCESGRNWRANTGNGFY  70

Query  76   GGLQISQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCSQGDAPLGSLT  135
            GGLQ     W   GGVG+PA AS +QQI VA+ ++  QG  AWPKC + S  D P+   +
Sbjct  71   GGLQFKPTIWARYGGVGNPAGASREQQITVANRVLADQGLDAWPKCGAAS--DLPITLWS  128

Query  136  H  136
            H
Sbjct  129  H  129


>gi|226305719|ref|YP_002765679.1| resuscitation-promoting factor [Rhodococcus erythropolis PR4]
 gi|226184836|dbj|BAH32940.1| putative resuscitation-promoting factor [Rhodococcus erythropolis 
PR4]
Length=184

 Score =  114 bits (284),  Expect = 6e-24, Method: Compositional matrix adjust.
 Identities = 54/101 (54%), Positives = 69/101 (69%), Gaps = 0/101 (0%)

Query  21   IVCTVFIETAVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQI  80
            I    F   AV   +    L +ST ++ A   +WD +AQCESGG+W  NTGNG YGGLQ 
Sbjct  6    ISKRAFGTLAVAGALVAVPLTMSTGTASAATHNWDGVAQCESGGDWNINTGNGYYGGLQF  65

Query  81   SQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKC  121
            SQ+TW +NGG GSPA AS ++QI VA+N +++QGPGAWP C
Sbjct  66   SQSTWTANGGTGSPANASKEEQIRVAENTLQSQGPGAWPVC  106


>gi|229490962|ref|ZP_04384795.1| secreted protein [Rhodococcus erythropolis SK121]
 gi|229322078|gb|EEN87866.1| secreted protein [Rhodococcus erythropolis SK121]
Length=184

 Score =  114 bits (284),  Expect = 7e-24, Method: Compositional matrix adjust.
 Identities = 54/101 (54%), Positives = 69/101 (69%), Gaps = 0/101 (0%)

Query  21   IVCTVFIETAVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQI  80
            I    F   AV   +    L +ST ++ A   +WD +AQCESGG+W  NTGNG YGGLQ 
Sbjct  6    ISKRAFGTLAVAGALVAVPLTMSTGTASAATHNWDGVAQCESGGDWNINTGNGYYGGLQF  65

Query  81   SQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKC  121
            SQ+TW +NGG GSPA AS ++QI VA+N +++QGPGAWP C
Sbjct  66   SQSTWTANGGTGSPANASKEEQIRVAENTLQSQGPGAWPVC  106


>gi|111023353|ref|YP_706325.1| hypothetical protein RHA1_ro06390 [Rhodococcus jostii RHA1]
 gi|110822883|gb|ABG98167.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=184

 Score =  112 bits (281),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 52/92 (57%), Positives = 67/92 (73%), Gaps = 0/92 (0%)

Query  30   AVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNG  89
            AV   +    LGLST ++ A   +WD +AQCESGGNW  NTGNG YGGLQ SQ+TW++NG
Sbjct  15   AVTGAVVAVPLGLSTGTASAASHNWDGVAQCESGGNWGINTGNGYYGGLQFSQSTWEANG  74

Query  90   GVGSPAAASPQQQIEVADNIMKTQGPGAWPKC  121
            G GS ++AS  +Q+ VA+N++ TQG GAWP C
Sbjct  75   GTGSASSASKAEQVRVAENVLATQGQGAWPVC  106


>gi|120404916|ref|YP_954745.1| transglycosylase domain-containing protein [Mycobacterium vanbaalenii 
PYR-1]
 gi|119957734|gb|ABM14739.1| Transglycosylase domain protein [Mycobacterium vanbaalenii PYR-1]
Length=111

 Score =  112 bits (279),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/90 (58%), Positives = 68/90 (76%), Gaps = 1/90 (1%)

Query  32   VATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNGGV  91
            VA M V + G++  ++ AD ++WDA+A CESGGNW+ NTGNG YGGLQ +  TW SNGG 
Sbjct  19   VAPMAV-VTGVAAGTANADSVNWDAVAACESGGNWSINTGNGYYGGLQFTMGTWQSNGGS  77

Query  92   GSPAAASPQQQIEVADNIMKTQGPGAWPKC  121
            GSP  AS ++QI VA+N+++TQG GAWP C
Sbjct  78   GSPHHASREEQIRVANNVLQTQGIGAWPSC  107


>gi|296164903|ref|ZP_06847459.1| transglycosylase domain protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295899745|gb|EFG79195.1| transglycosylase domain protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=149

 Score =  111 bits (278),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 59/118 (50%), Positives = 74/118 (63%), Gaps = 3/118 (2%)

Query  20   RIVCTVFIETAVVATMFVALLGLST-ISSKADDIDWDAIAQCESGGNWAANTGNGLYGGL  78
            +I+C   +++  V     A +  ST + S A   +WDAIAQCESGGNW ANTGNG YGGL
Sbjct  15   KILCKPLVKSLAVGGFVAASIASSTSVVSAAPTPNWDAIAQCESGGNWHANTGNGNYGGL  74

Query  79   QISQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCSQGDAPLGSLTH  136
            Q    TW   GGVG+PAAAS +QQI VA+ +   QG  AWPKC + S    P+G  +H
Sbjct  75   QFKPGTWQRYGGVGNPAAASREQQIAVANRVFADQGVEAWPKCGAAS--GLPIGWYSH  130


>gi|302530572|ref|ZP_07282914.1| predicted protein [Streptomyces sp. AA4]
 gi|302439467|gb|EFL11283.1| predicted protein [Streptomyces sp. AA4]
Length=208

 Score =  110 bits (276),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 50/82 (61%), Positives = 61/82 (75%), Gaps = 0/82 (0%)

Query  42   LSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNGGVGSPAAASPQQ  101
            L+  ++ A   +WDAIAQCESGGNW  NTGNG YGGLQ +Q+TW + GG GSP  AS +Q
Sbjct  31   LAIAATPASATNWDAIAQCESGGNWNTNTGNGYYGGLQFTQSTWKAYGGTGSPQGASREQ  90

Query  102  QIEVADNIMKTQGPGAWPKCSS  123
            QI VA+ +M+ QGPGAWP CS 
Sbjct  91   QIAVAERVMQGQGPGAWPVCSK  112


>gi|41407705|ref|NP_960541.1| hypothetical protein MAP1607c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41396058|gb|AAS03924.1| hypothetical protein MAP_1607c [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=170

 Score =  110 bits (275),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 57/116 (50%), Positives = 73/116 (63%), Gaps = 3/116 (2%)

Query  22   VCTVFIETAVVATMFVALLGLST-ISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQI  80
            +C + +++ VV     A +  ST + S     +WDAIAQCESGGNW ANTGNG YGGLQ 
Sbjct  38   LCKLLVKSVVVGGFVAASMASSTGVVSAEPTPNWDAIAQCESGGNWHANTGNGEYGGLQF  97

Query  81   SQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCSQGDAPLGSLTH  136
              ATW   GGVG+PAAAS +QQI VA+ +   +G   WPKC   +Q   P+G  +H
Sbjct  98   KPATWARYGGVGNPAAASREQQIAVANRVFAEEGVEPWPKCG--AQSGLPIGWYSH  151


>gi|54023902|ref|YP_118144.1| hypothetical protein nfa19340 [Nocardia farcinica IFM 10152]
 gi|54015410|dbj|BAD56780.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=111

 Score =  110 bits (274),  Expect = 8e-23, Method: Compositional matrix adjust.
 Identities = 51/87 (59%), Positives = 64/87 (74%), Gaps = 1/87 (1%)

Query  36   FVAL-LGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNGGVGSP  94
            FVA+   +S+ ++ A   DWDA+AQCESGGNW  NTGNG YGGLQ S +TW +NGG G  
Sbjct  21   FVAVPFAVSSATASAYGHDWDAVAQCESGGNWGINTGNGYYGGLQFSHSTWVANGGSGYA  80

Query  95   AAASPQQQIEVADNIMKTQGPGAWPKC  121
              AS ++QI VA+N++ TQGPGAWP C
Sbjct  81   HNASREEQIRVAENVLATQGPGAWPTC  107


>gi|226365861|ref|YP_002783644.1| resuscitation-promoting factor [Rhodococcus opacus B4]
 gi|226244351|dbj|BAH54699.1| putative resuscitation-promoting factor [Rhodococcus opacus B4]
Length=110

 Score =  110 bits (274),  Expect = 9e-23, Method: Compositional matrix adjust.
 Identities = 52/82 (64%), Positives = 64/82 (79%), Gaps = 0/82 (0%)

Query  40   LGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNGGVGSPAAASP  99
            LGLST ++ A   DWDA+A CES GNWAA+TGNG  GGLQ + +TW +NGG GSPA AS 
Sbjct  25   LGLSTGTASAASGDWDAVAACESSGNWAADTGNGFSGGLQFTDSTWAANGGSGSPANASR  84

Query  100  QQQIEVADNIMKTQGPGAWPKC  121
            ++QI VA+N++ TQGPGAWP C
Sbjct  85   EEQIRVAENVLATQGPGAWPVC  106


>gi|253799072|ref|YP_003032073.1| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis 
KZN 1435]
 gi|254550896|ref|ZP_05141343.1| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|289762035|ref|ZP_06521413.1| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis 
GM 1503]
 7 more sequence titles
 Length=176

 Score =  110 bits (274),  Expect = 9e-23, Method: Compositional matrix adjust.
 Identities = 55/105 (53%), Positives = 72/105 (69%), Gaps = 1/105 (0%)

Query  22   VCTVFIETAVVATMFVALLGLST-ISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQI  80
            +    I++A+ A +  A + LST ++      +WDA+AQCESGGNWAANTGNG YGGLQ 
Sbjct  40   IAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQF  99

Query  81   SQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCS  125
              ATW + GGVG+PAAAS +QQI VA+ ++  QG  AWP C + S
Sbjct  100  KPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAAS  144


>gi|15609021|ref|NP_216400.1| resuscitation-promoting factor RpfC [Mycobacterium tuberculosis 
H37Rv]
 gi|31793075|ref|NP_855568.1| resuscitation-promoting factor RpfC [Mycobacterium bovis AF2122/97]
 gi|121637788|ref|YP_978011.1| putative resuscitation-promoting factor rpfC [Mycobacterium bovis 
BCG str. Pasteur 1173P2]
 35 more sequence titles
 Length=176

 Score =  110 bits (274),  Expect = 9e-23, Method: Compositional matrix adjust.
 Identities = 55/105 (53%), Positives = 72/105 (69%), Gaps = 1/105 (0%)

Query  22   VCTVFIETAVVATMFVALLGLST-ISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQI  80
            +    I++A+ A +  A + LST ++      +WDA+AQCESGGNWAANTGNG YGGLQ 
Sbjct  40   IAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQF  99

Query  81   SQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCS  125
              ATW + GGVG+PAAAS +QQI VA+ ++  QG  AWP C + S
Sbjct  100  KPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAAS  144


>gi|15841354|ref|NP_336391.1| hypothetical protein MT1932 [Mycobacterium tuberculosis CDC1551]
 gi|254232061|ref|ZP_04925388.1| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis 
C]
 gi|13881587|gb|AAK46205.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
 gi|124601120|gb|EAY60130.1| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis 
C]
Length=188

 Score =  110 bits (274),  Expect = 9e-23, Method: Compositional matrix adjust.
 Identities = 55/105 (53%), Positives = 72/105 (69%), Gaps = 1/105 (0%)

Query  22   VCTVFIETAVVATMFVALLGLST-ISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQI  80
            +    I++A+ A +  A + LST ++      +WDA+AQCESGGNWAANTGNG YGGLQ 
Sbjct  52   IAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQF  111

Query  81   SQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCS  125
              ATW + GGVG+PAAAS +QQI VA+ ++  QG  AWP C + S
Sbjct  112  KPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAAS  156


>gi|340626892|ref|YP_004745344.1| putative resuscitation-promoting factor RPFC [Mycobacterium canettii 
CIPT 140010059]
 gi|340005082|emb|CCC44231.1| putative resuscitation-promoting factor RPFC [Mycobacterium canettii 
CIPT 140010059]
Length=176

 Score =  110 bits (274),  Expect = 9e-23, Method: Compositional matrix adjust.
 Identities = 55/105 (53%), Positives = 72/105 (69%), Gaps = 1/105 (0%)

Query  22   VCTVFIETAVVATMFVALLGLST-ISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQI  80
            +    I++A+ A +  A + LST ++      +WDA+AQCESGGNWAANTGNG YGGLQ 
Sbjct  40   IAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQF  99

Query  81   SQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCS  125
              ATW + GGVG+PAAAS +QQI VA+ ++  QG  AWP C + S
Sbjct  100  KPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAAS  144


>gi|333990096|ref|YP_004522710.1| resuscitation-promoting factor-like protein [Mycobacterium sp. 
JDM601]
 gi|333486064|gb|AEF35456.1| resuscitation-promoting factor-like protein [Mycobacterium sp. 
JDM601]
Length=108

 Score =  110 bits (274),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 48/92 (53%), Positives = 65/92 (71%), Gaps = 0/92 (0%)

Query  30   AVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNG  89
            A+   +    + LS  +++AD ++WDAIA CESGGNW+ NTGNG YGGLQ +  TW +NG
Sbjct  13   AIAGALITGAVALSDATARADSVNWDAIAACESGGNWSINTGNGYYGGLQFNAGTWRANG  72

Query  90   GVGSPAAASPQQQIEVADNIMKTQGPGAWPKC  121
            G G P  AS  +QI VA+N++++QG GAWP C
Sbjct  73   GSGMPHNASRSEQIRVAENVLRSQGIGAWPVC  104


>gi|289554342|ref|ZP_06443552.1| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis 
KZN 605]
 gi|289438974|gb|EFD21467.1| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis 
KZN 605]
Length=181

 Score =  110 bits (274),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 55/105 (53%), Positives = 72/105 (69%), Gaps = 1/105 (0%)

Query  22   VCTVFIETAVVATMFVALLGLST-ISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQI  80
            +    I++A+ A +  A + LST ++      +WDA+AQCESGGNWAANTGNG YGGLQ 
Sbjct  45   IAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQF  104

Query  81   SQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCS  125
              ATW + GGVG+PAAAS +QQI VA+ ++  QG  AWP C + S
Sbjct  105  KPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAAS  149


>gi|336457545|gb|EGO36551.1| transglycosylase-like protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=136

 Score =  109 bits (273),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 57/116 (50%), Positives = 73/116 (63%), Gaps = 3/116 (2%)

Query  22   VCTVFIETAVVATMFVALLGLST-ISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQI  80
            +C + +++ VV     A +  ST + S     +WDAIAQCESGGNW ANTGNG YGGLQ 
Sbjct  4    LCKLLVKSVVVGGFVAASMASSTGVVSAEPTPNWDAIAQCESGGNWHANTGNGEYGGLQF  63

Query  81   SQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCSQGDAPLGSLTH  136
              ATW   GGVG+PAAAS +QQI VA+ +   +G   WPKC   +Q   P+G  +H
Sbjct  64   KPATWARYGGVGNPAAASREQQIAVANRVFAEEGVEPWPKCG--AQSGLPIGWYSH  117


>gi|256379283|ref|YP_003102943.1| transglycosylase domain-containing protein [Actinosynnema mirum 
DSM 43827]
 gi|255923586|gb|ACU39097.1| Transglycosylase domain protein [Actinosynnema mirum DSM 43827]
Length=205

 Score =  109 bits (273),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 57/108 (53%), Positives = 73/108 (68%), Gaps = 2/108 (1%)

Query  15   RDRCARIVCTVFIETAVVATMFVAL-LGLSTISSKADDIDWDAIAQCESGGNWAANTGNG  73
            RD     V T  +  AV+  +  AL LG +T +S A   DWDAIA+CESGGNW+ NTGNG
Sbjct  5    RDERRSRVLTRLVACAVMGLISGALALGTATTAS-AQGADWDAIARCESGGNWSINTGNG  63

Query  74   LYGGLQISQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKC  121
             YGGLQ +  TW +NGG G P  AS ++QI VA+N++++QG GAWP C
Sbjct  64   YYGGLQFNPGTWAANGGSGMPHQASREEQIRVAENVLRSQGIGAWPHC  111


>gi|343924791|ref|ZP_08764330.1| putative resuscitation-promoting factor [Gordonia alkanivorans 
NBRC 16433]
 gi|343765298|dbj|GAA11256.1| putative resuscitation-promoting factor [Gordonia alkanivorans 
NBRC 16433]
Length=84

 Score =  109 bits (273),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 47/69 (69%), Positives = 60/69 (87%), Gaps = 0/69 (0%)

Query  53   DWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNGGVGSPAAASPQQQIEVADNIMKT  112
            +WDA+AQCESGG+W+ NTGNG YGGLQ SQ+TW++NGG G+PA AS ++QI VA+N++ T
Sbjct  12   NWDAVAQCESGGDWSINTGNGYYGGLQFSQSTWEANGGSGNPANASREEQIRVAENVLAT  71

Query  113  QGPGAWPKC  121
            QGPGAWP C
Sbjct  72   QGPGAWPTC  80


>gi|323719626|gb|EGB28749.1| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis 
CDC1551A]
Length=143

 Score =  109 bits (273),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 55/105 (53%), Positives = 72/105 (69%), Gaps = 1/105 (0%)

Query  22   VCTVFIETAVVATMFVALLGLST-ISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQI  80
            +    I++A+ A +  A + LST ++      +WDA+AQCESGGNWAANTGNG YGGLQ 
Sbjct  7    IAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQF  66

Query  81   SQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCS  125
              ATW + GGVG+PAAAS +QQI VA+ ++  QG  AWP C + S
Sbjct  67   KPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAAS  111


>gi|308231968|ref|ZP_07414442.2| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis 
SUMu001]
 gi|308369549|ref|ZP_07418224.2| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis 
SUMu002]
 gi|308370848|ref|ZP_07422950.2| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis 
SUMu003]
 23 more sequence titles
 Length=140

 Score =  109 bits (272),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 55/105 (53%), Positives = 72/105 (69%), Gaps = 1/105 (0%)

Query  22   VCTVFIETAVVATMFVALLGLST-ISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQI  80
            +    I++A+ A +  A + LST ++      +WDA+AQCESGGNWAANTGNG YGGLQ 
Sbjct  4    IAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQF  63

Query  81   SQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCS  125
              ATW + GGVG+PAAAS +QQI VA+ ++  QG  AWP C + S
Sbjct  64   KPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAAS  108


>gi|326383331|ref|ZP_08205019.1| transglycosylase domain-containing protein [Gordonia neofelifaecis 
NRRL B-59395]
 gi|326198081|gb|EGD55267.1| transglycosylase domain-containing protein [Gordonia neofelifaecis 
NRRL B-59395]
Length=107

 Score =  108 bits (271),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 52/93 (56%), Positives = 69/93 (75%), Gaps = 1/93 (1%)

Query  30   AVVATMFVALLGLSTISSKADD-IDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSN  88
            A+   + +A L L+   + AD   +WDA+AQCESGG+W+ NTGNG YGGLQ SQ+TW++N
Sbjct  11   AIAGALTIAPLTLAAGVASADTGHNWDAVAQCESGGDWSINTGNGYYGGLQFSQSTWEAN  70

Query  89   GGVGSPAAASPQQQIEVADNIMKTQGPGAWPKC  121
            GG GS   AS ++QI VA+N++ TQGPGAWP C
Sbjct  71   GGSGSANNASREEQIRVAENVLATQGPGAWPVC  103


>gi|118470954|ref|YP_888906.1| resuscitation-promoting factor [Mycobacterium smegmatis str. 
MC2 155]
 gi|118172241|gb|ABK73137.1| resuscitation-promoting factor [Mycobacterium smegmatis str. 
MC2 155]
Length=107

 Score =  108 bits (270),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 50/91 (55%), Positives = 64/91 (71%), Gaps = 0/91 (0%)

Query  31   VVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNGG  90
            V   + VA + L   ++ AD ++WDAIA CESGGNW+ NTGNG YGGLQ +  TW S+GG
Sbjct  13   VAGALAVAPVALGAGTANADSVNWDAIASCESGGNWSINTGNGYYGGLQFNLGTWRSHGG  72

Query  91   VGSPAAASPQQQIEVADNIMKTQGPGAWPKC  121
             G P  AS  +QI VA+N+++TQG GAWP C
Sbjct  73   AGMPHQASRSEQIRVAENVLRTQGIGAWPVC  103


>gi|312140603|ref|YP_004007939.1| resuscitation-promoting factor rpfd [Rhodococcus equi 103S]
 gi|325675770|ref|ZP_08155454.1| transglycosylase family protein [Rhodococcus equi ATCC 33707]
 gi|311889942|emb|CBH49259.1| putative resuscitation-promoting factor rpfD [Rhodococcus equi 
103S]
 gi|325553741|gb|EGD23419.1| transglycosylase family protein [Rhodococcus equi ATCC 33707]
Length=183

 Score =  108 bits (270),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 46/69 (67%), Positives = 55/69 (80%), Gaps = 0/69 (0%)

Query  53   DWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNGGVGSPAAASPQQQIEVADNIMKT  112
            +WD +AQCESGGNW  NTGNG YGGLQ SQ+TW +NGG GSP  AS ++QI VA+N + +
Sbjct  38   NWDGVAQCESGGNWGINTGNGYYGGLQFSQSTWTANGGTGSPHTASKEEQIRVAENTLAS  97

Query  113  QGPGAWPKC  121
            QGPGAWP C
Sbjct  98   QGPGAWPTC  106


>gi|111023354|ref|YP_706326.1| hypothetical protein RHA1_ro06391 [Rhodococcus jostii RHA1]
 gi|110822884|gb|ABG98168.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=110

 Score =  108 bits (270),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 54/101 (54%), Positives = 68/101 (68%), Gaps = 0/101 (0%)

Query  21   IVCTVFIETAVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQI  80
            IV       A+   +    LGLST ++ A   DWDA+A CES GNW A+TGNG  GGLQ 
Sbjct  6    IVKRTMGAIALTGAVIGVPLGLSTGTASAASGDWDAVAACESSGNWGADTGNGFSGGLQF  65

Query  81   SQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKC  121
            + +TW +NGG GSPA AS ++QI VA+N++ TQGPGAWP C
Sbjct  66   TDSTWAANGGSGSPANASREEQIRVAENVLATQGPGAWPVC  106


>gi|54026495|ref|YP_120737.1| hypothetical protein nfa45220 [Nocardia farcinica IFM 10152]
 gi|54018003|dbj|BAD59373.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=183

 Score =  108 bits (270),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 55/107 (52%), Positives = 69/107 (65%), Gaps = 4/107 (3%)

Query  15   RDRCARIVCTVFIETAVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGL  74
            R    R +  V    A+VA  F    GLST ++ A   +WD +AQCESGGNW  NTGNG 
Sbjct  5    RKISTRALGFVAATGALVAIPF----GLSTATASAATHNWDGVAQCESGGNWGINTGNGY  60

Query  75   YGGLQISQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKC  121
            YGGLQ S +TW +NGG G    AS ++QI VA+N+++TQG GAWP C
Sbjct  61   YGGLQFSHSTWVANGGTGYAHQASKEEQIRVAENVLQTQGVGAWPVC  107


>gi|315443664|ref|YP_004076543.1| transglycosylase-like protein [Mycobacterium sp. Spyr1]
 gi|315261967|gb|ADT98708.1| transglycosylase-like protein [Mycobacterium sp. Spyr1]
Length=125

 Score =  108 bits (269),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 47/76 (62%), Positives = 60/76 (79%), Gaps = 0/76 (0%)

Query  46   SSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNGGVGSPAAASPQQQIEV  105
            ++ AD ++WDA+A CESGGNW+ NTGNG YGGLQ +  TW SNGG GSP  AS ++QI V
Sbjct  46   TANADGVNWDAVAACESGGNWSINTGNGYYGGLQFTMGTWQSNGGSGSPHHASREEQIRV  105

Query  106  ADNIMKTQGPGAWPKC  121
            A+N+++TQG GAWP C
Sbjct  106  ANNVLQTQGIGAWPTC  121


>gi|108800529|ref|YP_640726.1| transglycosylase-like protein [Mycobacterium sp. MCS]
 gi|119869668|ref|YP_939620.1| transglycosylase domain-containing protein [Mycobacterium sp. 
KMS]
 gi|126436145|ref|YP_001071836.1| transglycosylase domain-containing protein [Mycobacterium sp. 
JLS]
 gi|108770948|gb|ABG09670.1| Transglycosylase-like protein [Mycobacterium sp. MCS]
 gi|119695757|gb|ABL92830.1| Transglycosylase domain protein [Mycobacterium sp. KMS]
 gi|126235945|gb|ABN99345.1| Transglycosylase domain protein [Mycobacterium sp. JLS]
Length=171

 Score =  107 bits (268),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 51/92 (56%), Positives = 66/92 (72%), Gaps = 6/92 (6%)

Query  30   AVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNG  89
            A+V T F      S+ ++ AD ++WDAIAQCESGGNW+ NTGNG +GGLQ    TW S+G
Sbjct  22   ALVPTFF------SSATASADSVNWDAIAQCESGGNWSTNTGNGYFGGLQFKPTTWSSHG  75

Query  90   GVGSPAAASPQQQIEVADNIMKTQGPGAWPKC  121
            G G+PA AS  +QI+VA+ ++ TQG  AWPKC
Sbjct  76   GRGNPANASRSEQIQVAERVLATQGLKAWPKC  107


>gi|226359722|ref|YP_002777500.1| resuscitation-promoting factor [Rhodococcus opacus B4]
 gi|226238207|dbj|BAH48555.1| putative resuscitation-promoting factor [Rhodococcus opacus B4]
Length=236

 Score =  107 bits (268),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 48/92 (53%), Positives = 63/92 (69%), Gaps = 0/92 (0%)

Query  30   AVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNG  89
            A++      LLGL   ++     DWD +A+CESGG+W  +TGNG YGGLQ +  TW +NG
Sbjct  27   ALIGAAATVLLGLGAGTALGAPHDWDEVAECESGGDWTTDTGNGFYGGLQFTPETWKANG  86

Query  90   GVGSPAAASPQQQIEVADNIMKTQGPGAWPKC  121
            G G P+ AS  +QI VA+N++KTQGPGAWP C
Sbjct  87   GKGDPSEASEAEQIRVAENVLKTQGPGAWPVC  118


>gi|145223206|ref|YP_001133884.1| transglycosylase domain-containing protein [Mycobacterium gilvum 
PYR-GCK]
 gi|145215692|gb|ABP45096.1| Transglycosylase domain protein [Mycobacterium gilvum PYR-GCK]
Length=171

 Score =  107 bits (268),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 47/76 (62%), Positives = 60/76 (79%), Gaps = 0/76 (0%)

Query  46   SSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNGGVGSPAAASPQQQIEV  105
            ++ AD ++WDA+A CESGGNW+ NTGNG YGGLQ +  TW SNGG GSP  AS ++QI V
Sbjct  92   TANADGVNWDAVAACESGGNWSINTGNGYYGGLQFTMGTWQSNGGSGSPHHASREEQIRV  151

Query  106  ADNIMKTQGPGAWPKC  121
            A+N+++TQG GAWP C
Sbjct  152  ANNVLQTQGIGAWPTC  167


>gi|342859533|ref|ZP_08716186.1| hypothetical protein MCOL_11658 [Mycobacterium colombiense CECT 
3035]
 gi|342132665|gb|EGT85885.1| hypothetical protein MCOL_11658 [Mycobacterium colombiense CECT 
3035]
Length=145

 Score =  107 bits (267),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 55/118 (47%), Positives = 73/118 (62%), Gaps = 3/118 (2%)

Query  20   RIVCTVFIETAVVATMFVALLGLST-ISSKADDIDWDAIAQCESGGNWAANTGNGLYGGL  78
            + +C + +++  V     A +  S  + S     +WDAIAQCESGGNW ANTGNG YGGL
Sbjct  11   KYLCKLLVKSVAVGGFIAASMASSAGVVSAEPTPNWDAIAQCESGGNWHANTGNGEYGGL  70

Query  79   QISQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCSQGDAPLGSLTH  136
            Q   +TW   GGVG+PAAAS +QQI VA+ +   +G  AWPKC + S    P+G  +H
Sbjct  71   QFKPSTWARYGGVGNPAAASREQQIAVANRVFAEEGVEAWPKCGANS--GLPIGWYSH  126


>gi|226365860|ref|YP_002783643.1| resuscitation-promoting factor [Rhodococcus opacus B4]
 gi|226244350|dbj|BAH54698.1| putative resuscitation-promoting factor [Rhodococcus opacus B4]
Length=184

 Score =  107 bits (266),  Expect = 9e-22, Method: Compositional matrix adjust.
 Identities = 50/92 (55%), Positives = 64/92 (70%), Gaps = 0/92 (0%)

Query  30   AVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDSNG  89
            AV   +    LGLS  ++ A   +WD +A CESGGNW  NTGNG YGGLQ SQ+TW++NG
Sbjct  15   AVTGAVVAVPLGLSAGTASAASHNWDGVAACESGGNWGINTGNGYYGGLQFSQSTWEANG  74

Query  90   GVGSPAAASPQQQIEVADNIMKTQGPGAWPKC  121
            G GS + AS  +Q+ VA+N++ TQG GAWP C
Sbjct  75   GSGSASNASKAEQVRVAENVLATQGQGAWPVC  106


>gi|108800530|ref|YP_640727.1| transglycosylase-like protein [Mycobacterium sp. MCS]
 gi|119869669|ref|YP_939621.1| transglycosylase domain-containing protein [Mycobacterium sp. 
KMS]
 gi|126436146|ref|YP_001071837.1| transglycosylase domain-containing protein [Mycobacterium sp. 
JLS]
 gi|108770949|gb|ABG09671.1| Transglycosylase-like protein [Mycobacterium sp. MCS]
 gi|119695758|gb|ABL92831.1| Transglycosylase domain protein [Mycobacterium sp. KMS]
 gi|126235946|gb|ABN99346.1| Transglycosylase domain protein [Mycobacterium sp. JLS]
Length=118

 Score =  106 bits (265),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 55/114 (49%), Positives = 74/114 (65%), Gaps = 2/114 (1%)

Query  9    AGAGRPRDRCARIVCTVFIETAVVATMFVALLGLSTISSKADD-IDWDAIAQCESGGNWA  67
            A A R  +    I  T+ + T     + VA + L   ++ AD  ++WDA+A CESGGNW+
Sbjct  2    ARAWRKEEVLKNIRKTLGLAT-FAGALAVAPMALGAGTANADSGVNWDAVAACESGGNWS  60

Query  68   ANTGNGLYGGLQISQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKC  121
             NTGNG YGGLQ +  TW SNGG GSP  AS ++QI VA+N++++QG GAWP C
Sbjct  61   INTGNGYYGGLQFTMGTWQSNGGSGSPHNASREEQIRVAENVLQSQGIGAWPTC  114


>gi|108799874|ref|YP_640071.1| transglycosylase-like protein [Mycobacterium sp. MCS]
 gi|108770293|gb|ABG09015.1| Transglycosylase-like protein [Mycobacterium sp. MCS]
Length=181

 Score =  106 bits (264),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 51/94 (55%), Positives = 64/94 (69%), Gaps = 4/94 (4%)

Query  32   VATMFVAL----LGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDS  87
            VA   VAL    + ++T  + A  ++WDAIAQCES GNWA NTGNG YGGLQ   ATW  
Sbjct  36   VALTAVALSTTSIAVATPKANASTVNWDAIAQCESSGNWAINTGNGFYGGLQFLPATWRE  95

Query  88   NGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKC  121
            +GGVGSP  A  + QI +A+ +++TQG GAWP C
Sbjct  96   HGGVGSPDKAPREYQIAIAERVLRTQGIGAWPVC  129


>gi|315441569|ref|YP_004074446.1| transglycosylase-like protein [Mycobacterium sp. Spyr1]
 gi|315265224|gb|ADU01965.1| transglycosylase-like protein [Mycobacterium sp. Spyr1]
Length=153

 Score =  105 bits (263),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 51/102 (50%), Positives = 67/102 (66%), Gaps = 0/102 (0%)

Query  20   RIVCTVFIETAVVATMFVALLGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQ  79
            R VC      AV   + V    +  IS+ A+ IDWDAIAQCESGG+W+ +TGNG +GGLQ
Sbjct  2    RAVCRFLTAIAVSGALAVTAHAVDPISAYANAIDWDAIAQCESGGDWSISTGNGYFGGLQ  61

Query  80   ISQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKC  121
               +TW  +GG G+PA A+  +QI VA+ ++ TQG GAWP C
Sbjct  62   FQPSTWAEHGGRGNPANAARTEQIRVAERVIGTQGLGAWPVC  103


>gi|119868984|ref|YP_938936.1| transglycosylase domain-containing protein [Mycobacterium sp. 
KMS]
 gi|126435517|ref|YP_001071208.1| transglycosylase domain-containing protein [Mycobacterium sp. 
JLS]
 gi|119695073|gb|ABL92146.1| Transglycosylase domain protein [Mycobacterium sp. KMS]
 gi|126235317|gb|ABN98717.1| Transglycosylase domain protein [Mycobacterium sp. JLS]
Length=152

 Score =  105 bits (262),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 51/94 (55%), Positives = 64/94 (69%), Gaps = 4/94 (4%)

Query  32   VATMFVAL----LGLSTISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQATWDS  87
            VA   VAL    + ++T  + A  ++WDAIAQCES GNWA NTGNG YGGLQ   ATW  
Sbjct  7    VALTAVALSTTSIAVATPKANASTVNWDAIAQCESSGNWAINTGNGFYGGLQFLPATWRE  66

Query  88   NGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKC  121
            +GGVGSP  A  + QI +A+ +++TQG GAWP C
Sbjct  67   HGGVGSPDKAPREYQIAIAERVLRTQGIGAWPVC  100


>gi|256374622|ref|YP_003098282.1| transglycosylase domain-containing protein [Actinosynnema mirum 
DSM 43827]
 gi|255918925|gb|ACU34436.1| Transglycosylase domain protein [Actinosynnema mirum DSM 43827]
Length=224

 Score =  104 bits (259),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 55/113 (49%), Positives = 72/113 (64%), Gaps = 3/113 (2%)

Query  12   GRPRDRCARIVCTV--FIETAVVATMFVALLGLS-TISSKADDIDWDAIAQCESGGNWAA  68
            G+ R +  R    V    + AV   +  A L ++ T S++   ++WDA+A CESGGNW+ 
Sbjct  6    GKHRFQSLRANAAVRGIAKVAVAGVIVGAPLAMAGTASAQGSGVNWDAVAACESGGNWSI  65

Query  69   NTGNGLYGGLQISQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKC  121
            NTGNG YGGLQ S +TW S+GG G    AS  +QI VA+N+MKTQG GAWP C
Sbjct  66   NTGNGYYGGLQFSPSTWSSHGGSGMANQASRAEQIRVAENVMKTQGIGAWPVC  118



Lambda     K      H
   0.315    0.131    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131222683000


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40