BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           17,799,605 sequences; 6,109,862,990 total letters



Query= Rv2395A

Length=71
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15841910|ref|NP_336947.1|  hypothetical protein MT2466 [Mycoba...   136    1e-30
gi|167968724|ref|ZP_02551001.1|  hypothetical protein MtubH3_1206...   124    5e-27
gi|255261649|ref|ZP_05340991.1|  pyruvate carboxylase [Thalassiob...  35.0    3.8  
gi|379754602|ref|YP_005343274.1|  unnamed protein product [Mycoba...  34.7    5.7  


>gi|15841910|ref|NP_336947.1| hypothetical protein MT2466 [Mycobacterium tuberculosis CDC1551]
 gi|254232533|ref|ZP_04925860.1| hypothetical protein TBCG_02339 [Mycobacterium tuberculosis C]
 gi|289570542|ref|ZP_06450769.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|13882180|gb|AAK46761.1| hypothetical protein MT2466 [Mycobacterium tuberculosis CDC1551]
 gi|124601592|gb|EAY60602.1| hypothetical protein TBCG_02339 [Mycobacterium tuberculosis C]
 gi|289544296|gb|EFD47944.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|358232583|dbj|GAA46075.1| hypothetical protein NCGM2209_2706 [Mycobacterium tuberculosis 
NCGM2209]
Length=71

 Score =  136 bits (343),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 70/71 (99%), Positives = 71/71 (100%), Gaps = 0/71 (0%)

Query  1   LTMTASVAKVTAARPEPSAAWAEARRRVRQRREDMLRHPAFLSKQLPAEPADDDGVAAVY  60
           +TMTASVAKVTAARPEPSAAWAEARRRVRQRREDMLRHPAFLSKQLPAEPADDDGVAAVY
Sbjct  1   MTMTASVAKVTAARPEPSAAWAEARRRVRQRREDMLRHPAFLSKQLPAEPADDDGVAAVY  60

Query  61  DIAIARRRRPA  71
           DIAIARRRRPA
Sbjct  61  DIAIARRRRPA  71


>gi|167968724|ref|ZP_02551001.1| hypothetical protein MtubH3_12065 [Mycobacterium tuberculosis 
H37Ra]
 gi|294994497|ref|ZP_06800188.1| hypothetical protein Mtub2_08273 [Mycobacterium tuberculosis 
210]
 gi|379028688|dbj|BAL66421.1| hypothetical protein ERDMAN_2632 [Mycobacterium tuberculosis 
str. Erdman = ATCC 35801]
Length=65

 Score =  124 bits (311),  Expect = 5e-27, Method: Compositional matrix adjust.
 Identities = 64/65 (99%), Positives = 65/65 (100%), Gaps = 0/65 (0%)

Query  7   VAKVTAARPEPSAAWAEARRRVRQRREDMLRHPAFLSKQLPAEPADDDGVAAVYDIAIAR  66
           +AKVTAARPEPSAAWAEARRRVRQRREDMLRHPAFLSKQLPAEPADDDGVAAVYDIAIAR
Sbjct  1   MAKVTAARPEPSAAWAEARRRVRQRREDMLRHPAFLSKQLPAEPADDDGVAAVYDIAIAR  60

Query  67  RRRPA  71
           RRRPA
Sbjct  61  RRRPA  65


>gi|255261649|ref|ZP_05340991.1| pyruvate carboxylase [Thalassiobium sp. R2A62]
 gi|255103984|gb|EET46658.1| pyruvate carboxylase [Thalassiobium sp. R2A62]
Length=1147

 Score = 35.0 bits (79),  Expect = 3.8, Method: Compositional matrix adjust.
 Identities = 25/74 (34%), Positives = 37/74 (50%), Gaps = 16/74 (21%)

Query  7    VAKVTAARPEPSAAWAEARRRVRQRR-----------EDMLRHPAFLSKQLPAEPADDDG  55
            + KVTA  P P AA A   R +R+ R           E++L+HP FLS +   +  DD  
Sbjct  396  LEKVTAWAPTPEAAIARMDRALREFRIRGVSTNIAFVENLLKHPTFLSNEYTTKFIDD--  453

Query  56   VAAVYDIAIARRRR  69
              A++D    ++RR
Sbjct  454  TPALFDF---KKRR  464


>gi|379754602|ref|YP_005343274.1| unnamed protein product [Mycobacterium intracellulare MOTT-02]
 gi|378804818|gb|AFC48953.1| hypothetical protein OCO_25900 [Mycobacterium intracellulare 
MOTT-02]
Length=71

 Score = 34.7 bits (78),  Expect = 5.7, Method: Compositional matrix adjust.
 Identities = 17/45 (38%), Positives = 27/45 (60%), Gaps = 0/45 (0%)

Query  1   LTMTASVAKVTAARPEPSAAWAEARRRVRQRREDMLRHPAFLSKQ  45
           +T+ A+  + T    +    WA A+RR R+R E M RHP+F ++Q
Sbjct  1   MTIVANTQEGTVIFLQSHPVWAAAQRRERERSEAMRRHPSFRTRQ  45



Lambda     K      H
   0.320    0.128    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 149645439300


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Apr 10, 2012  4:41 PM
  Number of letters in database: 6,109,862,990
  Number of sequences in database:  17,799,605



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40