BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           17,799,605 sequences; 6,109,862,990 total letters



Query= Rv2395B

Length=54
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15841911|ref|NP_336948.1|  hypothetical protein MT2467 [Mycoba...   106    1e-21
gi|297634998|ref|ZP_06952778.1|  hypothetical protein MtubK4_1278...  99.8    1e-19
gi|167968723|ref|ZP_02551000.1|  hypothetical protein MtubH3_1206...  95.9    2e-18


>gi|15841911|ref|NP_336948.1| hypothetical protein MT2467 [Mycobacterium tuberculosis CDC1551]
 gi|289570543|ref|ZP_06450770.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|13882181|gb|AAK46762.1| hypothetical protein MT2467 [Mycobacterium tuberculosis CDC1551]
 gi|289544297|gb|EFD47945.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=54

 Score =  106 bits (265),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 53/54 (99%), Positives = 54/54 (100%), Gaps = 0/54 (0%)

Query  1   VPGLVPAMPLDALRPARQPTSGLGECATMRRPEAGNEKVAVIWESLDVVPPESL  54
           +PGLVPAMPLDALRPARQPTSGLGECATMRRPEAGNEKVAVIWESLDVVPPESL
Sbjct  1   MPGLVPAMPLDALRPARQPTSGLGECATMRRPEAGNEKVAVIWESLDVVPPESL  54


>gi|297634998|ref|ZP_06952778.1| hypothetical protein MtubK4_12786 [Mycobacterium tuberculosis 
KZN 4207]
 gi|313659325|ref|ZP_07816205.1| hypothetical protein MtubKV_12928 [Mycobacterium tuberculosis 
KZN V2475]
Length=50

 Score = 99.8 bits (247),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 49/50 (98%), Positives = 50/50 (100%), Gaps = 0/50 (0%)

Query  5   VPAMPLDALRPARQPTSGLGECATMRRPEAGNEKVAVIWESLDVVPPESL  54
           +PAMPLDALRPARQPTSGLGECATMRRPEAGNEKVAVIWESLDVVPPESL
Sbjct  1   MPAMPLDALRPARQPTSGLGECATMRRPEAGNEKVAVIWESLDVVPPESL  50


>gi|167968723|ref|ZP_02551000.1| hypothetical protein MtubH3_12060 [Mycobacterium tuberculosis 
H37Ra]
Length=47

 Score = 95.9 bits (237),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 47/47 (100%), Positives = 47/47 (100%), Gaps = 0/47 (0%)

Query  8   MPLDALRPARQPTSGLGECATMRRPEAGNEKVAVIWESLDVVPPESL  54
           MPLDALRPARQPTSGLGECATMRRPEAGNEKVAVIWESLDVVPPESL
Sbjct  1   MPLDALRPARQPTSGLGECATMRRPEAGNEKVAVIWESLDVVPPESL  47



Lambda     K      H
   0.315    0.134    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 151990388685


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Apr 10, 2012  4:41 PM
  Number of letters in database: 6,109,862,990
  Number of sequences in database:  17,799,605



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40