BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2401

Length=109
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15841917|ref|NP_336954.1|  hypothetical protein MT2472 [Mycoba...   224    4e-57
gi|31793579|ref|NP_856072.1|  hypothetical protein Mb2423 [Mycoba...   221    3e-56
gi|340627410|ref|YP_004745862.1|  hypothetical protein MCAN_24331...   203    6e-51
gi|170044326|ref|XP_001849803.1|  hypothetical protein CpipJ_CPIJ...  33.5    9.4  


>gi|15841917|ref|NP_336954.1| hypothetical protein MT2472 [Mycobacterium tuberculosis CDC1551]
 gi|167966970|ref|ZP_02549247.1| hypothetical protein MtubH3_02503 [Mycobacterium tuberculosis 
H37Ra]
 gi|289758527|ref|ZP_06517905.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|13882187|gb|AAK46768.1| hypothetical protein MT2472 [Mycobacterium tuberculosis CDC1551]
 gi|289714091|gb|EFD78103.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length=134

 Score =  224 bits (570),  Expect = 4e-57, Method: Compositional matrix adjust.
 Identities = 109/109 (100%), Positives = 109/109 (100%), Gaps = 0/109 (0%)

Query  1    VRDFGQRSRSGGKAIAEHCRTHELHIRPRTGGESATTVQVGRSAANERADIAPRKTRCCV  60
            VRDFGQRSRSGGKAIAEHCRTHELHIRPRTGGESATTVQVGRSAANERADIAPRKTRCCV
Sbjct  26   VRDFGQRSRSGGKAIAEHCRTHELHIRPRTGGESATTVQVGRSAANERADIAPRKTRCCV  85

Query  61   HVAKPNRIRLADQLARSSMGEKPGHDHQRNQRDQNQRDVRPRHPGYLGA  109
            HVAKPNRIRLADQLARSSMGEKPGHDHQRNQRDQNQRDVRPRHPGYLGA
Sbjct  86   HVAKPNRIRLADQLARSSMGEKPGHDHQRNQRDQNQRDVRPRHPGYLGA  134


>gi|31793579|ref|NP_856072.1| hypothetical protein Mb2423 [Mycobacterium bovis AF2122/97]
 gi|57116984|ref|NP_216917.2| hypothetical protein Rv2401 [Mycobacterium tuberculosis H37Rv]
 gi|121638281|ref|YP_978505.1| hypothetical protein BCG_2416 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 43 more sequence titles
 Length=109

 Score =  221 bits (563),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 108/109 (99%), Positives = 109/109 (100%), Gaps = 0/109 (0%)

Query  1    VRDFGQRSRSGGKAIAEHCRTHELHIRPRTGGESATTVQVGRSAANERADIAPRKTRCCV  60
            +RDFGQRSRSGGKAIAEHCRTHELHIRPRTGGESATTVQVGRSAANERADIAPRKTRCCV
Sbjct  1    MRDFGQRSRSGGKAIAEHCRTHELHIRPRTGGESATTVQVGRSAANERADIAPRKTRCCV  60

Query  61   HVAKPNRIRLADQLARSSMGEKPGHDHQRNQRDQNQRDVRPRHPGYLGA  109
            HVAKPNRIRLADQLARSSMGEKPGHDHQRNQRDQNQRDVRPRHPGYLGA
Sbjct  61   HVAKPNRIRLADQLARSSMGEKPGHDHQRNQRDQNQRDVRPRHPGYLGA  109


>gi|340627410|ref|YP_004745862.1| hypothetical protein MCAN_24331 [Mycobacterium canettii CIPT 
140010059]
 gi|340005600|emb|CCC44764.1| hypothetical protein MCAN_24331 [Mycobacterium canettii CIPT 
140010059]
Length=110

 Score =  203 bits (517),  Expect = 6e-51, Method: Compositional matrix adjust.
 Identities = 100/103 (98%), Positives = 103/103 (100%), Gaps = 0/103 (0%)

Query  1    VRDFGQRSRSGGKAIAEHCRTHELHIRPRTGGESATTVQVGRSAANERADIAPRKTRCCV  60
            +RDFGQRSRSGGKAIAEHCRTHELHIRPRTGGESATTVQVGRSAA+ERADIAPRKTRCCV
Sbjct  1    MRDFGQRSRSGGKAIAEHCRTHELHIRPRTGGESATTVQVGRSAADERADIAPRKTRCCV  60

Query  61   HVAKPNRIRLADQLARSSMGEKPGHDHQRNQRDQNQRDVRPRH  103
            HVAKPNRIRLADQLARSSMGEKPGHDHQR+QRDQNQRDVRPRH
Sbjct  61   HVAKPNRIRLADQLARSSMGEKPGHDHQRHQRDQNQRDVRPRH  103


>gi|170044326|ref|XP_001849803.1| hypothetical protein CpipJ_CPIJ008168 [Culex quinquefasciatus]
 gi|167867520|gb|EDS30903.1| hypothetical protein CpipJ_CPIJ008168 [Culex quinquefasciatus]
Length=409

 Score = 33.5 bits (75),  Expect = 9.4, Method: Compositional matrix adjust.
 Identities = 25/70 (36%), Positives = 32/70 (46%), Gaps = 3/70 (4%)

Query  24   LHIRPRTGGE--SATTVQVGRSAANERADIA-PRKTRCCVHVAKPNRIRLADQLARSSMG  80
            L  RP    E   A T ++GR      A +    +TR C+HV+ P   RLA  L     G
Sbjct  222  LQFRPVPPYERTPAETTRLGRYIEERHARLCGAVRTRRCMHVSTPESARLALWLWTRQQG  281

Query  81   EKPGHDHQRN  90
              PGH  +RN
Sbjct  282  TAPGHGIERN  291



Lambda     K      H
   0.319    0.132    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129509500864


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40