BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2403c
Length=251
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609540|ref|NP_216919.1| lipoprotein LppR [Mycobacterium tub... 500 7e-140
gi|31793582|ref|NP_856075.1| lipoprotein LppR [Mycobacterium bov... 499 2e-139
gi|340627414|ref|YP_004745866.1| putative lipoprotein LPPR [Myco... 492 2e-137
gi|308369708|ref|ZP_07418781.2| lipoprotein lppR [Mycobacterium ... 483 8e-135
gi|308371003|ref|ZP_07423516.2| lipoprotein lppR [Mycobacterium ... 473 1e-131
gi|308379192|ref|ZP_07485443.2| lipoprotein lppR [Mycobacterium ... 431 6e-119
gi|254232541|ref|ZP_04925868.1| lipoprotein lppR [Mycobacterium ... 293 2e-77
gi|342857800|ref|ZP_08714456.1| putative lipoprotein LPPR [Mycob... 214 1e-53
gi|254818752|ref|ZP_05223753.1| lipoprotein lppR [Mycobacterium ... 213 1e-53
gi|342857801|ref|ZP_08714457.1| LppR [Mycobacterium colombiense ... 196 4e-48
gi|183983702|ref|YP_001851993.1| lipoprotein, LppR [Mycobacteriu... 191 7e-47
gi|118618933|ref|YP_907265.1| lipoprotein, LppR [Mycobacterium u... 187 1e-45
gi|296170541|ref|ZP_06852125.1| lipoprotein, LppR [Mycobacterium... 184 1e-44
gi|342857799|ref|ZP_08714455.1| lipoprotein, LppR [Mycobacterium... 166 4e-39
gi|41408314|ref|NP_961150.1| LppR [Mycobacterium avium subsp. pa... 164 8e-39
gi|118464267|ref|YP_881003.1| LppR protein [Mycobacterium avium ... 164 1e-38
gi|254774597|ref|ZP_05216113.1| LppR protein [Mycobacterium aviu... 164 1e-38
gi|296170542|ref|ZP_06852126.1| lipoprotein LppR [Mycobacterium ... 157 2e-36
gi|254818753|ref|ZP_05223754.1| LppR [Mycobacterium intracellula... 155 6e-36
gi|118468940|ref|YP_888826.1| LppR protein [Mycobacterium smegma... 146 3e-33
gi|333990149|ref|YP_004522763.1| hypothetical protein JDM601_150... 144 2e-32
gi|333990214|ref|YP_004522828.1| hypothetical protein JDM601_157... 139 5e-31
gi|296164324|ref|ZP_06846908.1| possible LppR protein [Mycobacte... 126 4e-27
gi|296170540|ref|ZP_06852124.1| lipoprotein, LppR1 [Mycobacteriu... 82.4 6e-14
gi|145223261|ref|YP_001133939.1| LppR [Mycobacterium gilvum PYR-... 77.8 1e-12
gi|120404837|ref|YP_954666.1| LppR [Mycobacterium vanbaalenii PY... 70.5 2e-10
gi|169627906|ref|YP_001701555.1| lipoprotein LppR [Mycobacterium... 63.9 2e-08
gi|240169953|ref|ZP_04748612.1| hypothetical protein MkanA1_1161... 59.7 4e-07
gi|183983703|ref|YP_001851994.1| lipoprotein, LppR_1 [Mycobacter... 57.0 2e-06
gi|118618934|ref|YP_907266.1| lipoprotein, LppR_1 [Mycobacterium... 57.0 3e-06
gi|108800458|ref|YP_640655.1| protein LppR [Mycobacterium sp. MC... 55.1 9e-06
gi|120404838|ref|YP_954667.1| hypothetical protein Mvan_3880 [My... 49.7 4e-04
gi|183984142|ref|YP_001852433.1| transmembrane serine/threonine-... 43.1 0.037
gi|333991145|ref|YP_004523759.1| hypothetical protein JDM601_250... 41.6 0.12
gi|240169523|ref|ZP_04748182.1| hypothetical protein MkanA1_0943... 41.2 0.13
gi|296170175|ref|ZP_06851770.1| non-specific serine/threonine pr... 41.2 0.13
gi|169245915|gb|ACA50936.1| transmembrane serine/threonine-prote... 40.4 0.23
gi|49146103|ref|YP_025541.1| hypothetical protein MUP019 [Mycoba... 40.4 0.24
gi|254820140|ref|ZP_05225141.1| serine/threonine-protein kinase ... 39.3 0.49
gi|209418064|ref|YP_002274093.1| hypothetical protein MULP_030 [... 39.3 0.57
gi|296164614|ref|ZP_06847181.1| possible lipoprotein LppH [Mycob... 38.9 0.65
gi|254818735|ref|ZP_05223736.1| PknM [Mycobacterium intracellula... 38.1 1.3
gi|240172634|ref|ZP_04751293.1| transmembrane serine/threonine-p... 37.7 1.4
gi|169245971|gb|ACA50992.1| hypothetical protein MUDP_082 [Mycob... 37.4 2.2
gi|296166291|ref|ZP_06848729.1| PknM protein [Mycobacterium para... 37.0 2.6
gi|289442702|ref|ZP_06432446.1| probable transmembrane serine/th... 37.0 2.6
gi|339297889|gb|AEJ49999.1| putative transmembrane serine/threon... 37.0 2.8
gi|289554945|ref|ZP_06444155.1| transmembrane serine/threonine-p... 37.0 2.8
gi|289446857|ref|ZP_06436601.1| transmembrane serine/threonine-p... 37.0 2.9
gi|340626279|ref|YP_004744731.1| putative transmembrane serine/t... 37.0 3.0
>gi|15609540|ref|NP_216919.1| lipoprotein LppR [Mycobacterium tuberculosis H37Rv]
gi|15841920|ref|NP_336957.1| putative lipoprotein [Mycobacterium tuberculosis CDC1551]
gi|148662236|ref|YP_001283759.1| putative lipoprotein LppR [Mycobacterium tuberculosis H37Ra]
59 more sequence titles
Length=251
Score = 500 bits (1288), Expect = 7e-140, Method: Compositional matrix adjust.
Identities = 250/251 (99%), Positives = 251/251 (100%), Gaps = 0/251 (0%)
Query 1 VTNRWRWVVPLFAVFLAAGCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQ 60
+TNRWRWVVPLFAVFLAAGCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQ
Sbjct 1 MTNRWRWVVPLFAVFLAAGCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQ 60
Query 61 PFQALPPFPPVFGGSDSLGDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGS 120
PFQALPPFPPVFGGSDSLGDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGS
Sbjct 61 PFQALPPFPPVFGGSDSLGDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGS 120
Query 121 SVKVDDVDEGVVALPSAAAADDLFARFSAQWKECDGTTLTVPASAFGQRSITDVRVADSV 180
SVKVDDVDEGVVALPSAAAADDLFARFSAQWKECDGTTLTVPASAFGQRSITDVRVADSV
Sbjct 121 SVKVDDVDEGVVALPSAAAADDLFARFSAQWKECDGTTLTVPASAFGQRSITDVRVADSV 180
Query 181 VAATVSLRRGTHSILASVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDIA 240
VAATVSLRRGTHSILASVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDIA
Sbjct 181 VAATVSLRRGTHSILASVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDIA 240
Query 241 HAMMDRISELS 251
HAMMDRISELS
Sbjct 241 HAMMDRISELS 251
>gi|31793582|ref|NP_856075.1| lipoprotein LppR [Mycobacterium bovis AF2122/97]
gi|121638284|ref|YP_978508.1| putative lipoprotein lppR [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224990778|ref|YP_002645465.1| putative lipoprotein [Mycobacterium bovis BCG str. Tokyo 172]
gi|31619175|emb|CAD97287.1| PROBABLE CONSERVED LIPOPROTEIN LPPR [Mycobacterium bovis AF2122/97]
gi|121493932|emb|CAL72407.1| Probable conserved lipoprotein lppR [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|224773891|dbj|BAH26697.1| putative lipoprotein [Mycobacterium bovis BCG str. Tokyo 172]
gi|341602322|emb|CCC64996.1| probable conserved lipoprotein lppR [Mycobacterium bovis BCG
str. Moreau RDJ]
Length=251
Score = 499 bits (1284), Expect = 2e-139, Method: Compositional matrix adjust.
Identities = 249/251 (99%), Positives = 251/251 (100%), Gaps = 0/251 (0%)
Query 1 VTNRWRWVVPLFAVFLAAGCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQ 60
+TNRWRWVVPLFAVFLAAGCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQ
Sbjct 1 MTNRWRWVVPLFAVFLAAGCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQ 60
Query 61 PFQALPPFPPVFGGSDSLGDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGS 120
PFQALPPFPPVFGGSDSLGDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGS
Sbjct 61 PFQALPPFPPVFGGSDSLGDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGS 120
Query 121 SVKVDDVDEGVVALPSAAAADDLFARFSAQWKECDGTTLTVPASAFGQRSITDVRVADSV 180
SVKVDD+DEGVVALPSAAAADDLFARFSAQWKECDGTTLTVPASAFGQRSITDVRVADSV
Sbjct 121 SVKVDDLDEGVVALPSAAAADDLFARFSAQWKECDGTTLTVPASAFGQRSITDVRVADSV 180
Query 181 VAATVSLRRGTHSILASVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDIA 240
VAATVSLRRGTHSILASVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDIA
Sbjct 181 VAATVSLRRGTHSILASVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDIA 240
Query 241 HAMMDRISELS 251
HAMMDRISELS
Sbjct 241 HAMMDRISELS 251
>gi|340627414|ref|YP_004745866.1| putative lipoprotein LPPR [Mycobacterium canettii CIPT 140010059]
gi|340005604|emb|CCC44768.1| putative conserved lipoprotein LPPR [Mycobacterium canettii CIPT
140010059]
Length=251
Score = 492 bits (1266), Expect = 2e-137, Method: Compositional matrix adjust.
Identities = 246/251 (99%), Positives = 247/251 (99%), Gaps = 0/251 (0%)
Query 1 VTNRWRWVVPLFAVFLAAGCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQ 60
+TNRWRWVVPLFAVFLAAGCTTTT GKAGLAPNAVPRPL GSLIQRVPLDGAALSTLLNQ
Sbjct 1 MTNRWRWVVPLFAVFLAAGCTTTTAGKAGLAPNAVPRPLTGSLIQRVPLDGAALSTLLNQ 60
Query 61 PFQALPPFPPVFGGSDSLGDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGS 120
PFQALPPFPPVFGGSDSLGDSDVSARPADCVGVGYLTQRNVYRSVEVK VARVSWRHDGS
Sbjct 61 PFQALPPFPPVFGGSDSLGDSDVSARPADCVGVGYLTQRNVYRSVEVKRVARVSWRHDGS 120
Query 121 SVKVDDVDEGVVALPSAAAADDLFARFSAQWKECDGTTLTVPASAFGQRSITDVRVADSV 180
SVKVDDVDEGVVALPSAAAADDLFARFSAQWKECDGTTLTVPASAFGQRSITDVRVADSV
Sbjct 121 SVKVDDVDEGVVALPSAAAADDLFARFSAQWKECDGTTLTVPASAFGQRSITDVRVADSV 180
Query 181 VAATVSLRRGTHSILASVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDIA 240
VAATVSLRRGTHSILASVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADIS SAVDIA
Sbjct 181 VAATVSLRRGTHSILASVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISISAVDIA 240
Query 241 HAMMDRISELS 251
HAMMDRISELS
Sbjct 241 HAMMDRISELS 251
>gi|308369708|ref|ZP_07418781.2| lipoprotein lppR [Mycobacterium tuberculosis SUMu002]
gi|308380355|ref|ZP_07489657.2| lipoprotein lppR [Mycobacterium tuberculosis SUMu011]
gi|308405014|ref|ZP_07494198.2| lipoprotein lppR [Mycobacterium tuberculosis SUMu012]
gi|308326681|gb|EFP15532.1| lipoprotein lppR [Mycobacterium tuberculosis SUMu002]
gi|308361740|gb|EFP50591.1| lipoprotein lppR [Mycobacterium tuberculosis SUMu011]
gi|308365350|gb|EFP54201.1| lipoprotein lppR [Mycobacterium tuberculosis SUMu012]
Length=244
Score = 483 bits (1244), Expect = 8e-135, Method: Compositional matrix adjust.
Identities = 243/244 (99%), Positives = 244/244 (100%), Gaps = 0/244 (0%)
Query 8 VVPLFAVFLAAGCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQPFQALPP 67
+VPLFAVFLAAGCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQPFQALPP
Sbjct 1 MVPLFAVFLAAGCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQPFQALPP 60
Query 68 FPPVFGGSDSLGDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVKVDDV 127
FPPVFGGSDSLGDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVKVDDV
Sbjct 61 FPPVFGGSDSLGDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVKVDDV 120
Query 128 DEGVVALPSAAAADDLFARFSAQWKECDGTTLTVPASAFGQRSITDVRVADSVVAATVSL 187
DEGVVALPSAAAADDLFARFSAQWKECDGTTLTVPASAFGQRSITDVRVADSVVAATVSL
Sbjct 121 DEGVVALPSAAAADDLFARFSAQWKECDGTTLTVPASAFGQRSITDVRVADSVVAATVSL 180
Query 188 RRGTHSILASVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDIAHAMMDRI 247
RRGTHSILASVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDIAHAMMDRI
Sbjct 181 RRGTHSILASVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDIAHAMMDRI 240
Query 248 SELS 251
SELS
Sbjct 241 SELS 244
>gi|308371003|ref|ZP_07423516.2| lipoprotein lppR [Mycobacterium tuberculosis SUMu003]
gi|308330109|gb|EFP18960.1| lipoprotein lppR [Mycobacterium tuberculosis SUMu003]
Length=238
Score = 473 bits (1216), Expect = 1e-131, Method: Compositional matrix adjust.
Identities = 237/238 (99%), Positives = 238/238 (100%), Gaps = 0/238 (0%)
Query 14 VFLAAGCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQPFQALPPFPPVFG 73
+FLAAGCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQPFQALPPFPPVFG
Sbjct 1 MFLAAGCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQPFQALPPFPPVFG 60
Query 74 GSDSLGDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVKVDDVDEGVVA 133
GSDSLGDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVKVDDVDEGVVA
Sbjct 61 GSDSLGDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVKVDDVDEGVVA 120
Query 134 LPSAAAADDLFARFSAQWKECDGTTLTVPASAFGQRSITDVRVADSVVAATVSLRRGTHS 193
LPSAAAADDLFARFSAQWKECDGTTLTVPASAFGQRSITDVRVADSVVAATVSLRRGTHS
Sbjct 121 LPSAAAADDLFARFSAQWKECDGTTLTVPASAFGQRSITDVRVADSVVAATVSLRRGTHS 180
Query 194 ILASVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDIAHAMMDRISELS 251
ILASVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDIAHAMMDRISELS
Sbjct 181 ILASVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDIAHAMMDRISELS 238
>gi|308379192|ref|ZP_07485443.2| lipoprotein lppR [Mycobacterium tuberculosis SUMu010]
gi|308357795|gb|EFP46646.1| lipoprotein lppR [Mycobacterium tuberculosis SUMu010]
Length=217
Score = 431 bits (1108), Expect = 6e-119, Method: Compositional matrix adjust.
Identities = 216/217 (99%), Positives = 217/217 (100%), Gaps = 0/217 (0%)
Query 35 VPRPLMGSLIQRVPLDGAALSTLLNQPFQALPPFPPVFGGSDSLGDSDVSARPADCVGVG 94
+PRPLMGSLIQRVPLDGAALSTLLNQPFQALPPFPPVFGGSDSLGDSDVSARPADCVGVG
Sbjct 1 MPRPLMGSLIQRVPLDGAALSTLLNQPFQALPPFPPVFGGSDSLGDSDVSARPADCVGVG 60
Query 95 YLTQRNVYRSVEVKSVARVSWRHDGSSVKVDDVDEGVVALPSAAAADDLFARFSAQWKEC 154
YLTQRNVYRSVEVKSVARVSWRHDGSSVKVDDVDEGVVALPSAAAADDLFARFSAQWKEC
Sbjct 61 YLTQRNVYRSVEVKSVARVSWRHDGSSVKVDDVDEGVVALPSAAAADDLFARFSAQWKEC 120
Query 155 DGTTLTVPASAFGQRSITDVRVADSVVAATVSLRRGTHSILASVPQARAVGVRGNCVVEV 214
DGTTLTVPASAFGQRSITDVRVADSVVAATVSLRRGTHSILASVPQARAVGVRGNCVVEV
Sbjct 121 DGTTLTVPASAFGQRSITDVRVADSVVAATVSLRRGTHSILASVPQARAVGVRGNCVVEV 180
Query 215 AVTFFGITHPSDQGSADISTSAVDIAHAMMDRISELS 251
AVTFFGITHPSDQGSADISTSAVDIAHAMMDRISELS
Sbjct 181 AVTFFGITHPSDQGSADISTSAVDIAHAMMDRISELS 217
>gi|254232541|ref|ZP_04925868.1| lipoprotein lppR [Mycobacterium tuberculosis C]
gi|124601600|gb|EAY60610.1| lipoprotein lppR [Mycobacterium tuberculosis C]
Length=150
Score = 293 bits (749), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 144/145 (99%), Positives = 145/145 (100%), Gaps = 0/145 (0%)
Query 1 VTNRWRWVVPLFAVFLAAGCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQ 60
+TNRWRWVVPLFAVFLAAGCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQ
Sbjct 1 MTNRWRWVVPLFAVFLAAGCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQ 60
Query 61 PFQALPPFPPVFGGSDSLGDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGS 120
PFQALPPFPPVFGGSDSLGDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGS
Sbjct 61 PFQALPPFPPVFGGSDSLGDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGS 120
Query 121 SVKVDDVDEGVVALPSAAAADDLFA 145
SVKVDDVDEGVVALPSAAAADDLFA
Sbjct 121 SVKVDDVDEGVVALPSAAAADDLFA 145
>gi|342857800|ref|ZP_08714456.1| putative lipoprotein LPPR [Mycobacterium colombiense CECT 3035]
gi|342135133|gb|EGT88299.1| putative lipoprotein LPPR [Mycobacterium colombiense CECT 3035]
Length=234
Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/236 (50%), Positives = 155/236 (66%), Gaps = 6/236 (2%)
Query 14 VFLAAGCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQPFQALPPFPPVFG 73
+ L GCT T TG AGLAP+A P I+R DG AL+ LL QPFQ P + FG
Sbjct 1 MLLMTGCTETITGTAGLAPSAGRVPA----IKRALFDGTALARLLAQPFQPYPHYSD-FG 55
Query 74 GSDSLGDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVKVDDVDEGVVA 133
G D LG + +PADC+GV +L QR Y S ++ A W H G S +VD V +G+VA
Sbjct 56 GVDKLGSGWDNGQPADCIGVVHLMQRVTYASASIQLTAGEMWVHKGDSERVDSVQQGIVA 115
Query 134 LPSAAAADDLFARFSAQWKECDGTTLTV-PASAFGQRSITDVRVADSVVAATVSLRRGTH 192
L + A A+ LFA+F+AQW+ CDGTTL V P + +I+DVRVADSVVAATVS+ G H
Sbjct 116 LGTDADANALFAKFTAQWRRCDGTTLLVEPIDVWNSDAISDVRVADSVVAATVSMGSGPH 175
Query 193 SILASVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDIAHAMMDRIS 248
L ++P+ARA+GV+G +VEV V F I +D G+ADI+T+A+D+ HA+MD++S
Sbjct 176 GGLNAIPEARALGVKGTYLVEVTVEFSPIYGQADVGNADINTTAIDLTHALMDKLS 231
>gi|254818752|ref|ZP_05223753.1| lipoprotein lppR [Mycobacterium intracellulare ATCC 13950]
Length=237
Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 118/242 (49%), Positives = 157/242 (65%), Gaps = 6/242 (2%)
Query 11 LFAVFLAAGCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQPFQALPPFPP 70
+ AV L +GCT T +G LAPNA P I+R DG AL+ LL+QPFQ P +
Sbjct 1 MVAVLLVSGCTQTISGTGTLAPNAGRVPA----IKRALFDGTALAKLLDQPFQPYPHYSE 56
Query 71 VFGGSDSLGDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVKVDDVDEG 130
FGG D LG + A+PA+C+GV +L QR Y S + A W SVK+D V +G
Sbjct 57 -FGGGDKLGTAWDKAKPAECIGVVHLMQRGPYGSAPILETAAEMWVGKRDSVKIDIVQQG 115
Query 131 VVALPSAAAADDLFARFSAQWKECDGTTLTVPAS-AFGQRSITDVRVADSVVAATVSLRR 189
+VAL +AA AD LFARF AQW++CDGTTL P + +G +I+DVRV +SVVAATVS+
Sbjct 116 IVALQTAADADALFARFVAQWQKCDGTTLIAPPTDIYGTDAISDVRVLNSVVAATVSMGS 175
Query 190 GTHSILASVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDIAHAMMDRISE 249
+S+L + P ARA+GV+G VVEV V F I P DQG+ +I+T+A+D+AHA+MD++
Sbjct 176 APYSVLNATPVARALGVKGPYVVEVRVDFIPIYGPGDQGNGNINTTAIDLAHALMDKLGA 235
Query 250 LS 251
S
Sbjct 236 RS 237
>gi|342857801|ref|ZP_08714457.1| LppR [Mycobacterium colombiense CECT 3035]
gi|342135134|gb|EGT88300.1| LppR [Mycobacterium colombiense CECT 3035]
Length=247
Score = 196 bits (497), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 111/239 (47%), Positives = 148/239 (62%), Gaps = 13/239 (5%)
Query 19 GCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQPFQALPPFPPVFGGSDSL 78
GC G A APN P+PL G+ +++V LDG LS +LNQPF A P FGG + L
Sbjct 14 GCGGVVAGTAKPAPNLKPQPLSGATVKQVLLDGPTLSRMLNQPFVARDPAE--FGGPEKL 71
Query 79 GDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVKVDDVDEGVVALPSAA 138
S A C+GV + Q+ VYRS +VK VA SW ++G +V V+EGVV LPS A
Sbjct 72 YQVKRSMSQAGCLGVTAMLQQGVYRSADVKDVASESWWNNGEPAQVIVVEEGVVTLPSPA 131
Query 139 AADDLFARFSAQWKECDGTTLTVPASAFGQRS-ITDVRVADSVVAATVSLRRGTHSILAS 197
A LFA+FS QW++C+G T + + + I+DVR DS +AAT + SIL +
Sbjct 132 QAQALFAQFSQQWQQCNGMTTSEQSGPISTTNVISDVRTTDSTIAAT----KTATSILPN 187
Query 198 V------PQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDIAHAMMDRISEL 250
+ PQARA+G+R NC+VEV V FFG SD GSADI++SA+D+AHA+MD++S L
Sbjct 188 MPPLRPTPQARAIGIRSNCLVEVQVVFFGGRRSSDPGSADINSSAIDVAHALMDKVSAL 246
>gi|183983702|ref|YP_001851993.1| lipoprotein, LppR [Mycobacterium marinum M]
gi|183177028|gb|ACC42138.1| conserved hypothetical lipoprotein, LppR [Mycobacterium marinum
M]
Length=257
Score = 191 bits (486), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 110/257 (43%), Positives = 157/257 (62%), Gaps = 10/257 (3%)
Query 4 RWRWVVP-LFAVFLAAGCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQPF 62
R R V+ L + LA+GCT+ G A A P+ + G I+ V LD AAL+ +L Q F
Sbjct 2 RTRLVLACLLIISLASGCTSVVAGTALPAAGLAPQLVTGEAIKDVLLDSAALAKILGQDF 61
Query 63 QALPPFPPVFGGSDSLGDSDVSARPADCVGVGYLTQRNVY----RSVEVKSVARVSWRHD 118
A PP FGG + L ++ DC+G+ + ++ Y RS V++VAR +W +
Sbjct 62 TAKSELPPRFGGPEKLQEAFGRVSRVDCLGITTMLAKSAYQSARRSGSVENVARETWWNS 121
Query 119 GSSVKVDDVDEGVVALPSAAAADDLFARFSAQWKECDGTTLTVPAS--AFGQRSITDVRV 176
KV V EGVVAL A +LF F+ QW CDG +T+ + AF + ITDVR+
Sbjct 122 AGPAKVISVAEGVVALSGPDEAAELFESFTQQWDSCDGAMVTIDSGKVAFADK-ITDVRI 180
Query 177 ADSVVAATVSL--RRGTHSILASVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADIST 234
+SV+AATVS+ R + A+ P+ARA+G+RGNC+VEV + FF + P+D+GSADI+T
Sbjct 181 TNSVLAATVSIGTRISGSQLKAARPEARAIGLRGNCLVEVEIAFFSVRGPADKGSADINT 240
Query 235 SAVDIAHAMMDRISELS 251
SA++IAHAMM+R+S +S
Sbjct 241 SAIEIAHAMMERVSNMS 257
>gi|118618933|ref|YP_907265.1| lipoprotein, LppR [Mycobacterium ulcerans Agy99]
gi|118571043|gb|ABL05794.1| conserved hypothetical lipoprotein, LppR [Mycobacterium ulcerans
Agy99]
Length=253
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 108/249 (44%), Positives = 155/249 (63%), Gaps = 9/249 (3%)
Query 11 LFAVFLAAGCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQPFQALPPFPP 70
L A+ LA+GCT+ G A A P+ + G I+ V LD AAL+ +L Q F A PP
Sbjct 6 LLAISLASGCTSVVAGAALPAAGLAPQLVTGEAIKDVLLDSAALAKILGQDFTAKSELPP 65
Query 71 VFGGSDSLGDSDVSARPADCVGVGYLTQRNVY----RSVEVKSVARVSWRHDGSSVKVDD 126
FGG++ L ++ DC+G+ + ++ Y RS V++VAR +W + KV
Sbjct 66 RFGGTERLQEAFGRVSRVDCLGITTMLAKSAYQSARRSGSVENVARETWWNSAGPAKVIS 125
Query 127 VDEGVVALPSAAAADDLFARFSAQWKECDGTTLTVPAS--AFGQRSITDVRVADSVVAAT 184
V EGVVAL A +LF F+ QW CDG +T+ + AF + ITDVR+ +SV+AAT
Sbjct 126 VAEGVVALSGPDEAAELFESFTQQWDSCDGAMVTIDSGKVAFADK-ITDVRITNSVLAAT 184
Query 185 VSL--RRGTHSILASVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDIAHA 242
VS+ R + A+ P+ARA+G+RGNC+VEV + FF + P+D+GSADI+TSA++IAHA
Sbjct 185 VSIGTRISGSQLKAARPEARAIGLRGNCLVEVEIAFFSVRGPADKGSADINTSAIEIAHA 244
Query 243 MMDRISELS 251
MM+R+S +S
Sbjct 245 MMERVSNMS 253
>gi|296170541|ref|ZP_06852125.1| lipoprotein, LppR [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295894773|gb|EFG74498.1| lipoprotein, LppR [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=259
Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 108/244 (45%), Positives = 146/244 (60%), Gaps = 14/244 (5%)
Query 19 GCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQPFQALPPFPPVFGGSDSL 78
GCT T + AP PRP+ G +++V LD L+ LL Q F P FGG + L
Sbjct 19 GCTVDGTARP--APGLKPRPVTGQAVKKVLLDDGELAKLLGQSFGTKTELPARFGGPEVL 76
Query 79 GDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVKVDDVDEGVVALPSAA 138
+ + PA+C GV + + Y+S +VK+ AR +W + KV +V EGVVAL S A
Sbjct 77 PPAFGAVTPANCAGVTSMMVKTAYQSGDVKNAARETWWNTHGPAKVINVAEGVVALSSTA 136
Query 139 AADDLFARFSAQWKECDGTTLTV---------PASAFGQRSITDVRVADSVVAATVSLRR 189
A LF F+ QW++CDGTT+ + PA F +I+DVRV DSVVAAT+S+
Sbjct 137 GAAALFRDFARQWRDCDGTTVIIGRPSIITDRPAIVF-LDTISDVRVTDSVVAATISIDT 195
Query 190 GTHSILAS--VPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDIAHAMMDRI 247
+ +S P+ARA+GVRGNC+VEV V FF PSD+GS D+ SA+D+AHAMMD++
Sbjct 196 QLPGLPSSGPRPEARAIGVRGNCLVEVEVAFFNAASPSDEGSGDVHRSAIDLAHAMMDKV 255
Query 248 SELS 251
S LS
Sbjct 256 SALS 259
>gi|342857799|ref|ZP_08714455.1| lipoprotein, LppR [Mycobacterium colombiense CECT 3035]
gi|342135132|gb|EGT88298.1| lipoprotein, LppR [Mycobacterium colombiense CECT 3035]
Length=243
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 96/240 (40%), Positives = 139/240 (58%), Gaps = 4/240 (1%)
Query 14 VFLAAGCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQPFQALPPFPPVFG 73
+ LA+GC+ G A AP PR L G+ I+RV L +ALS ++ QP P FPP F
Sbjct 4 MMLASGCSVAVDGTARPAPGGTPRSLSGTTIKRVLLGRSALSRIVKQPLTIDPGFPPSFA 63
Query 74 GSDSLGDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVKVDDVDEGVVA 133
G +SL D A P DC+GV + Q + YR +V+ VA+ +WR + ++ V V EGVV
Sbjct 64 GPESL-QGDRVAWPDDCIGVAVMLQHSAYRHRKVRDVAQETWRPNSTTATVIRVQEGVVD 122
Query 134 LPSAAAADDLFARFSAQWKECDGTTLTVPASAFGQRS-ITDVRVADSVVAATVSLRRGTH 192
LP+ A A+ LF FS QW+ C+G T+ + F ++ + DV+VA SV+AAT S+ +
Sbjct 123 LPTPADAEALFVTFSRQWQRCEGKTVALTGRPFRLKAKVDDVQVAASVLAATTSIELDSP 182
Query 193 SILA--SVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDIAHAMMDRISEL 250
+ L S+P RA+GVR NC++EV V F + ++ SA+DIA M D++ L
Sbjct 183 NPLLEDSLPAGRAIGVRDNCLIEVEVDFANTPARPARQPDEVDASALDIAQVMRDKVDAL 242
>gi|41408314|ref|NP_961150.1| LppR [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41396670|gb|AAS04533.1| LppR [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336458250|gb|EGO37231.1| hypothetical protein MAPs_15450 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=252
Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 111/235 (48%), Positives = 146/235 (63%), Gaps = 5/235 (2%)
Query 19 GCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQPFQALPPFPPVFGGSDSL 78
GC +G A APN PRPL G+ +Q+V LDG LS +LNQPF A P GG + L
Sbjct 19 GCGGVVSGTAKPAPNLKPRPLSGATVQQVLLDGPTLSRMLNQPFVARDPA--QVGGPEKL 76
Query 79 GDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVKVDDVDEGVVALPSAA 138
SA + C+GV + Q++VY + +V+ VA SW ++G +V V EGVV LPSAA
Sbjct 77 YRGRRSASQSGCLGVTAMLQKSVYPAADVRDVAAESWWNNGEPAQVITVMEGVVTLPSAA 136
Query 139 AADDLFARFSAQWKECDGTTLTVPASAFGQRS-ITDVRVADSVVAATVSLRRGTHSI--L 195
A LFA+FS QW++C+G T + + + I+DVR D+ VAAT + ++ L
Sbjct 137 QAQALFAQFSRQWQQCNGMTTSEQSGPISTTNVISDVRATDTTVAATKTATAVLPNMPAL 196
Query 196 ASVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDIAHAMMDRISEL 250
PQ RA+GVR NC+VEV V FFG SD GSAD++TSA+DIAHAMMDR+S L
Sbjct 197 RPTPQGRALGVRSNCLVEVEVVFFGGRRSSDPGSADLNTSALDIAHAMMDRVSAL 251
>gi|118464267|ref|YP_881003.1| LppR protein [Mycobacterium avium 104]
gi|118165554|gb|ABK66451.1| LppR protein [Mycobacterium avium 104]
Length=252
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 111/235 (48%), Positives = 146/235 (63%), Gaps = 5/235 (2%)
Query 19 GCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQPFQALPPFPPVFGGSDSL 78
GC +G A APN PRPL G+ +Q+V LDG LS +LNQPF A P GG + L
Sbjct 19 GCGGVVSGTAKPAPNLKPRPLSGATVQQVLLDGPTLSRMLNQPFVARDPAQ--VGGPEKL 76
Query 79 GDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVKVDDVDEGVVALPSAA 138
SA + C+GV + Q++VY + +V+ VA SW ++G +V V EGVV LPSAA
Sbjct 77 YRGGRSASQSGCLGVTAMLQKSVYPAADVRDVAAESWWNNGELAQVITVMEGVVTLPSAA 136
Query 139 AADDLFARFSAQWKECDGTTLTVPASAFGQRS-ITDVRVADSVVAATVSLRRGTHSI--L 195
A LFA+FS QW++C+G T + + + I+DVR D+ VAAT + ++ L
Sbjct 137 QAQALFAQFSRQWQQCNGMTTSEQSGPISTTNVISDVRATDTTVAATKTATAVLPNMPAL 196
Query 196 ASVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDIAHAMMDRISEL 250
PQ RA+GVR NC+VEV V FFG SD GSAD++TSA+DIAHAMMDR+S L
Sbjct 197 RPTPQGRALGVRSNCLVEVEVVFFGGRRSSDPGSADLNTSALDIAHAMMDRVSAL 251
>gi|254774597|ref|ZP_05216113.1| LppR protein [Mycobacterium avium subsp. avium ATCC 25291]
Length=252
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 111/235 (48%), Positives = 146/235 (63%), Gaps = 5/235 (2%)
Query 19 GCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQPFQALPPFPPVFGGSDSL 78
GC +G A APN PRPL G+ +Q+V LDG LS +LNQPF A P GG + L
Sbjct 19 GCGGVVSGTAKPAPNLKPRPLSGATVQQVLLDGPTLSRMLNQPFVARDPA--QVGGPEKL 76
Query 79 GDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVKVDDVDEGVVALPSAA 138
SA + C+GV + Q++VY + +V+ VA SW ++G +V V EGVV LPSAA
Sbjct 77 YRGGRSASQSGCLGVTAMLQKSVYPAADVRDVAAESWWNNGELAQVITVMEGVVTLPSAA 136
Query 139 AADDLFARFSAQWKECDGTTLTVPASAFGQRS-ITDVRVADSVVAATVSLRRGTHSI--L 195
A LFA+FS QW++C+G T + + + I+DVR D+ VAAT + ++ L
Sbjct 137 QAQALFAQFSRQWQQCNGMTTSEQSGPISATNVISDVRATDTTVAATKTATAVLPNMPAL 196
Query 196 ASVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDIAHAMMDRISEL 250
PQ RA+GVR NC+VEV V FFG SD GSAD++TSA+DIAHAMMDR+S L
Sbjct 197 RPTPQGRALGVRSNCLVEVEVVFFGGRRSSDPGSADLNTSALDIAHAMMDRVSAL 251
>gi|296170542|ref|ZP_06852126.1| lipoprotein LppR [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295894774|gb|EFG74499.1| lipoprotein LppR [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=245
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/247 (41%), Positives = 143/247 (58%), Gaps = 8/247 (3%)
Query 9 VPLFAVFLAAGCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQPFQALPPF 68
+PL + LA GC+ T G A AP+ PR + G + RV + +ALS ++ QP + P +
Sbjct 3 IPLI-LLLATGCSVTVGGAARPAPDLAPRSVHGQTLNRVLVGKSALSRIVRQPMELDPRY 61
Query 69 PPVFGGSD-SLGDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSS-VKVDD 126
PPV G LGDSD + C+GV + Q YRS +V+ VA +WR GSS V
Sbjct 62 PPVSGRPPLPLGDSDWFQK---CLGVAVIMQGAAYRSADVQDVALETWRPVGSSPAAVTG 118
Query 127 VDEGVVALPSAAAADDLFARFSAQWKECDGTTLTVPASAFG-QRSITDVRVADSVVAATV 185
V E ++LP+AA A+ LFA FS QW+ CDG T+ V A Q ++ V+ A SVVAAT+
Sbjct 119 VKEAAISLPTAADANALFATFSRQWQGCDGKTVPVAGGALPLQVKVSHVQSAGSVVAATI 178
Query 186 SLRRGTHSILASVPQARAV-GVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDIAHAMM 244
S++ ++ A A GVR NC++EV V F S +G+ D++TSA+DIA M
Sbjct 179 SMQWNAPAMFAPAIPAARAIGVRDNCLIEVEVDFLDTLSASREGAGDVNTSALDIAQVMR 238
Query 245 DRISELS 251
D+++ LS
Sbjct 239 DKVTALS 245
>gi|254818753|ref|ZP_05223754.1| LppR [Mycobacterium intracellulare ATCC 13950]
Length=252
Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 103/236 (44%), Positives = 142/236 (61%), Gaps = 5/236 (2%)
Query 19 GCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQPFQALPPFPPVFGGSDSL 78
GC G A APN RPL G+ + +V LDGA LS +L+Q + P GG + L
Sbjct 19 GCGAVVNGTAKPAPNLKLRPLSGATVSKVLLDGAMLSRMLDQTL--ISREPAQVGGPEKL 76
Query 79 GDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVKVDDVDEGVVALPSAA 138
S A C+GV + Q++VYRS +V+ VA VSW ++G +V V EGVV LPSAA
Sbjct 77 YQVKRSTSQAGCLGVTAMLQKSVYRSAQVQDVASVSWWNNGEPAQVITVMEGVVTLPSAA 136
Query 139 AADDLFARFSAQWKECDGTTLTVPASAFGQRS-ITDVRVADSVVAATVSLRRGTHSI--L 195
A LFA+FS QW++C+G T + + I+DVR + +AAT + ++ L
Sbjct 137 QAQALFAQFSQQWQQCNGMTTSEQTGPISTTNVISDVRGTATTIAATKTATSVLPNMPAL 196
Query 196 ASVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDIAHAMMDRISELS 251
PQARA+G+R NC+VEV V FFG +D GSA++++SA+DIA AMMDR++ LS
Sbjct 197 RPTPQARAIGIRSNCLVEVEVVFFGGRRSTDPGSANVNSSALDIARAMMDRVNALS 252
>gi|118468940|ref|YP_888826.1| LppR protein [Mycobacterium smegmatis str. MC2 155]
gi|118170227|gb|ABK71123.1| LppR protein [Mycobacterium smegmatis str. MC2 155]
Length=257
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 98/254 (39%), Positives = 136/254 (54%), Gaps = 10/254 (3%)
Query 6 RWVVPLFAVFLAAGCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQPF-QA 64
+W V ++ L GCT G A + PRPL G+ I RV LS +L+Q +
Sbjct 6 KWSVVAASLVLVVGCTRIVDGSMQPAADLPPRPLRGADIARVLPGVDELSEILDQRMVED 65
Query 65 LPPFPPVFGGSDSLGD---SDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSS 121
+ V GG + + D ++ A P DCVG QR+VY S +V V + D
Sbjct 66 IGGRRDVSGGVEDMPDGLATESDATPHDCVGTTSAMQRSVYESADVTEVISEGFDGDEDG 125
Query 122 VKVDDVDEGVVALPSAAAADDLFARFSAQWKECDGTTLTVPAS----AFGQRSITDVRVA 177
V + GVVAL S A+A+ LF F+ QW++CDGTT+T+ F +TDVRV
Sbjct 126 GAVLAANVGVVALDSVASANKLFDAFAEQWQDCDGTTVTIVKEPVRGGFFTDHVTDVRVE 185
Query 178 DSVVAATVSLRRGTHSILASVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTSAV 237
+SVVAATV S++ P ARA+GVR NC+VEV V ++ +G+ D+ A+
Sbjct 186 NSVVAATVEFGHTLDSLI--TPVARALGVRANCLVEVDVAYYSEPESRQKGNTDVDAVAI 243
Query 238 DIAHAMMDRISELS 251
DIAH MMD IS+L+
Sbjct 244 DIAHEMMDEISDLT 257
>gi|333990149|ref|YP_004522763.1| hypothetical protein JDM601_1509 [Mycobacterium sp. JDM601]
gi|333486117|gb|AEF35509.1| lipoprotein LppR [Mycobacterium sp. JDM601]
Length=255
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/240 (43%), Positives = 135/240 (57%), Gaps = 13/240 (5%)
Query 19 GCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQPFQALPPFPPVFGGSDSL 78
GCTT +G AP P P+ G +++V LD A LS L+ QPF++ P PP FGG DSL
Sbjct 21 GCTTVVSGTVRPAPGLAPTPVTGIAVRQVLLDDAELSKLIGQPFRSDPSLPPRFGGVDSL 80
Query 79 GDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVKVDD----VDEGVVAL 134
D+ +A P DCVG Q+ VY+S V+ VA W D +S D V E V+AL
Sbjct 81 PDAWDTAGPEDCVGAAVGGQQAVYKSAGVQDVAHEFW--DSTSTTGDSALTGVGEAVIAL 138
Query 135 PSAAAADDLFARFSAQWKECDGTTLTVPASAFGQRS--ITDVRVADSVVAATVSLRRGTH 192
+ A AD LF +F+ QW CDG T+T A G+ S I DV +D+V+ ATV R T
Sbjct 139 ATPADADALFEKFTQQWGRCDGVTVTRGDEADGEASGEIIDVSTSDTVLTATV---RTTV 195
Query 193 SILASVPQARAVGVRGNCVVEVAVTFF-GITHPSDQGSADISTSAVDIAHAMMDRISELS 251
+ +RAV V NC+V+V V +F G +D A ST+A D+A AM+D++ LS
Sbjct 196 DGEVGLRVSRAVAVLVNCIVDVDVFWFVGEEDHADAPPAGDSTAA-DLARAMLDKVRNLS 254
>gi|333990214|ref|YP_004522828.1| hypothetical protein JDM601_1574 [Mycobacterium sp. JDM601]
gi|333486182|gb|AEF35574.1| lipoprotein LppR [Mycobacterium sp. JDM601]
Length=241
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 88/229 (39%), Positives = 130/229 (57%), Gaps = 27/229 (11%)
Query 39 LMGSLIQRVPLDGAALSTLLNQPFQALPPFPPVFGGSDSLGDSDVSARPADCVGVGYLTQ 98
+ G +++V LDGA L+ +L+QPF + PP +GG +++ DS + +CVGV +
Sbjct 24 ISGETVKQVLLDGAELTKMLDQPFTTVT-GPPAYGGLEAMEDSSATG---ECVGVVDVAP 79
Query 99 RNVYRSVEVKSVARVSW-----RHDGSS---VKVDDVDEGVVALPSAAAADDLFARFSAQ 150
++VY + +V+S AR +W DG + +V V E VVALPS A A +LFA F+ Q
Sbjct 80 KSVYSAADVQSYARETWIDSEPHRDGFTPLTTRVMFVKEAVVALPSEADAQELFASFAQQ 139
Query 151 WKECDGTTLTVPASAFG--------QRSITDVRVADSVVAATVSLRRGTHSILASVPQAR 202
WK CDG + G + ITDVRV D V+AA++ L + + P R
Sbjct 140 WKRCDGRPVNTTDPVSGAQPHLHGTEMHITDVRVTDDVLAASIVLDKSPKA-----PDTR 194
Query 203 AVGVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDIAHAMMDRISELS 251
A+GVRGN +V V + F G + + GSAD TS++ AMMD+++ELS
Sbjct 195 AIGVRGNYIVGVLIAFTGTENAT--GSADPQTSSIQAVQAMMDKVTELS 241
>gi|296164324|ref|ZP_06846908.1| possible LppR protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295900306|gb|EFG79728.1| possible LppR protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=250
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/237 (35%), Positives = 124/237 (53%), Gaps = 18/237 (7%)
Query 17 AAGCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQPFQALPPFPPVFGGSD 76
AAGC TG A A N P PL G +I+ L LS + +Q F+ PVFGG
Sbjct 26 AAGCADVVTGTAHPAANLKPHPLTGPVIKDTMLTDTELSHVFDQAFEI--DRSPVFGGPA 83
Query 77 SLGDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSW----RHDGSSVKVDDVDEGVV 132
L A+ +DC G+ + Y + +V +VA W H + V +++EGVV
Sbjct 84 ELFWDWPGAKQSDCAGLSKILIGETYTNAQVLNVAHEMWWDSHSHLSPVITVINLEEGVV 143
Query 133 ALPSAAAADDLFARFSAQWKECDGTTLTVPASAFGQRSITDVRVADSVVAATVSLRRGTH 192
ALPS AAAD +FA+F+ QW+ C G + A+ + + + +V SVV ATV H
Sbjct 144 ALPSMAAADGMFAKFTQQWQRCVGARIQSGANVYYE--VGEVHAEGSVVEATVE----NH 197
Query 193 SILASVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDIAHAMMDRISE 249
++ ++ A+GVR NC+VEV++T++ T P+ +A DIA M+++I +
Sbjct 198 DQTINLRESHALGVRNNCLVEVSITYYRDTAPAP------GKTASDIARQMLNKIGD 248
>gi|296170540|ref|ZP_06852124.1| lipoprotein, LppR1 [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295894772|gb|EFG74497.1| lipoprotein, LppR1 [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=239
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 81/248 (33%), Positives = 112/248 (46%), Gaps = 30/248 (12%)
Query 15 FLAAGCTTTTTGKAGLAPNAVPRPLMGSLI---QRVPLDGAALSTLLNQPFQALPPFPP- 70
L GC TT G P R L GS++ Q +P D + + N+ LPP P
Sbjct 11 MLGTGCVTTVAGT----PTRAGR-LGGSVLPLEQVLPDDTEVSAAVGNR----LPPHSPA 61
Query 71 VFGGSDSLGDS---DVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVKVDDV 127
V GG D L + A P DC+GV R VY V++VA + + S V V
Sbjct 62 VVGGIDVLPNGIRDSGGAAPIDCLGVVAPAMRIVYEPGHVRAVATQDYWNYDSGVTVSSA 121
Query 128 DEGVVALPSAAAADDLFARFSAQWKECDGTTLTVPASAFGQRSI----TDVRVADSVVAA 183
+ L SAA A LFA F QW+ C+GTT+T+ + TD RV V++A
Sbjct 122 TATAIRLASAADAQRLFASFVKQWQRCEGTTITMYTHDSSNTELYSKPTDTRVDGPVLSA 181
Query 184 TVSLRRGTHSILASVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDIAHAM 243
TV H+ + P RAVGV+G+ + EV V +D T A+D+ M
Sbjct 182 TVIAWDNHHT--SPAPDERAVGVQGDVIAEVKV--------ADGPRVRAGTRAIDLVDVM 231
Query 244 MDRISELS 251
+ ++S S
Sbjct 232 LRKVSSSS 239
>gi|145223261|ref|YP_001133939.1| LppR [Mycobacterium gilvum PYR-GCK]
gi|315443721|ref|YP_004076600.1| hypothetical protein Mspyr1_21110 [Mycobacterium sp. Spyr1]
gi|145215747|gb|ABP45151.1| LppR [Mycobacterium gilvum PYR-GCK]
gi|315262024|gb|ADT98765.1| hypothetical protein Mspyr1_21110 [Mycobacterium sp. Spyr1]
Length=235
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/188 (38%), Positives = 93/188 (50%), Gaps = 22/188 (11%)
Query 69 PPVFGGSDSL--GDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWR---HDGSSVK 123
PPV G SD L G +D A PA CV Y Q VY V SVA +W DG V
Sbjct 59 PPVEGDSDVLLSGVADAHATPAHCVSAAYRLQEIVYDDSPVHSVASSTWAGGAFDGPPVS 118
Query 124 VDDVDEGVVALPSAAAADDLFARFSAQWKECDGTT--LTVPASAFGQRS-ITDVRVADSV 180
GVV + S AAA + FA + QW+ C+ T L P G+ S ITDV + V
Sbjct 119 GF---FGVVQMASPAAAQEFFAATTEQWRHCNSQTVALQSPERGVGELSRITDVTFDERV 175
Query 181 VAATVSLRRGTHSILASVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDIA 240
V+A+V T + AS RA+G+ G+C+VEV +T P +G AV +A
Sbjct 176 VSASV---LHTSAGTASPTAMRALGLAGDCIVEVE-----LTDPRAEGP---PRGAVAVA 224
Query 241 HAMMDRIS 248
++D+I+
Sbjct 225 DVILDKIA 232
>gi|120404837|ref|YP_954666.1| LppR [Mycobacterium vanbaalenii PYR-1]
gi|119957655|gb|ABM14660.1| LppR [Mycobacterium vanbaalenii PYR-1]
Length=247
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/185 (35%), Positives = 89/185 (49%), Gaps = 18/185 (9%)
Query 70 PVFGGSDSLGDS--DVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVKVDDV 127
PV G +D L S D PA+CV Y Q VY + V+SVA +W G
Sbjct 72 PVEGDADVLLRSVADAQVAPAECVSAAYRMQEIVYDTSPVQSVASNTWAGGGFDGPPVSG 131
Query 128 DEGVVALPSAAAADDLFARFSAQWKECDGTTLTV--PASAFGQRS-ITDVRVADSVVAAT 184
GVV + AA + FA + QW+ C+G T+++ P G+ S IT V VV+A
Sbjct 132 FFGVVQMTDPGAAQEFFASLTDQWRRCNGQTVSLQSPDHGAGEMSRITGVAFDQRVVSAH 191
Query 185 V-SLRRGTHSILASVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDIAHAM 243
V GT S RAVG+ G+C+VEV + D +A SAV +A A+
Sbjct 192 VLHASGGTESPTG----MRAVGLAGDCIVEVELI--------DPRAAADGRSAVAVADAI 239
Query 244 MDRIS 248
+D+I+
Sbjct 240 LDKIA 244
>gi|169627906|ref|YP_001701555.1| lipoprotein LppR [Mycobacterium abscessus ATCC 19977]
gi|169239873|emb|CAM60901.1| Hypothetical conserved lipoprotein LppR [Mycobacterium abscessus]
Length=251
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/248 (27%), Positives = 107/248 (44%), Gaps = 15/248 (6%)
Query 7 WVVPLFAVFLAAGCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQPFQALP 66
W L V + GC+ G+A A P I RV D A LS +L P QA
Sbjct 8 WQALLVVVAMLVGCSELVNGRA--LKPAPPPDPPERPITRVLPDQAELSRVLRSPMQARY 65
Query 67 PFPPVFGGSDSLGDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVKVDD 126
P GG L D A +C+ V R+ Y V + R++W + ++
Sbjct 66 GGRP--GGVQMLPDGMAGASLVECIKVHAPVMRHTYEQAPVHAATRITWNTERGHMQFPA 123
Query 127 VDE----GVVALPSAAAADDLFARFSAQWKECDGTTLTVPASAFGQR-SITDVRVADSVV 181
D GV+ L ++ +A + R +A W+ C+G T + + + R I + A ++
Sbjct 124 PDLRTTFGVIELDTSDSARSWYRRLAADWRRCEGKTAVIVRANYTLRYDIGPISDAGDLM 183
Query 182 AATVSLRRGTHSILASVPQARAVGVRGNCVVEVAVTFFG-ITHPSDQGSADISTSAVDIA 240
TV + GT S +P RA+ +++V + F + HP++ G I+ A IA
Sbjct 184 -TTVLMFSGTGSS-RPMPVQRALAQVSRYLIDVEIMDFADLKHPAEPG---ITDKAEAIA 238
Query 241 HAMMDRIS 248
+ D+I+
Sbjct 239 QLITDQIN 246
>gi|240169953|ref|ZP_04748612.1| hypothetical protein MkanA1_11619 [Mycobacterium kansasii ATCC
12478]
Length=70
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/56 (58%), Positives = 38/56 (68%), Gaps = 1/56 (1%)
Query 16 LAAGCTTTTTGKAGLAPNAVPRPLMGSLIQRVPLDGAALSTLLNQPFQ-ALPPFPP 70
L++GCT TT G AG APN VP L G +I+ +DG AL+ LLNQPFQ A P PP
Sbjct 13 LSSGCTATTGGNAGPAPNIVPHALTGPVIKHAMIDGTALAMLLNQPFQTAYRPCPP 68
>gi|183983703|ref|YP_001851994.1| lipoprotein, LppR_1 [Mycobacterium marinum M]
gi|183177029|gb|ACC42139.1| conserved hypothetical lipoprotein, LppR_1 [Mycobacterium marinum
M]
Length=247
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/193 (27%), Positives = 87/193 (46%), Gaps = 20/193 (10%)
Query 65 LPPF-PPVFGGSDSLGDS---DVSARPADCVGVGYLTQRNVYRSVEVKSVA-RVSWRHDG 119
LPP PP+ G L + + +A P +C+G R Y V++ A + W +D
Sbjct 63 LPPHSPPMVGDIGVLPNGIRDNSAATPIECLGAIAPAMRISYEVAPVRAAALQDYWNYD- 121
Query 120 SSVKVDDVDEGVVALPSAAAADDLFARFSAQWKECDGTTLTVPASAFGQ----RSITDVR 175
S V + L S+ A LFA F+ QW++C+G T+T+ +T+VR
Sbjct 122 SGVVASSATVAAIKLASSDDAQRLFASFTQQWRQCEGRTVTMYTHDRSDTELYSKVTEVR 181
Query 176 VADSVVAATVSLRRGTHSILASVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTS 235
+++AT+ H+ P RAVGV+G+ + + V + P T
Sbjct 182 TDGPILSATIISWDNHHT--PQSPVERAVGVQGDVLADAKVALRPHSQP--------GTR 231
Query 236 AVDIAHAMMDRIS 248
A+++ M+ ++S
Sbjct 232 AIELVKVMLRKVS 244
>gi|118618934|ref|YP_907266.1| lipoprotein, LppR_1 [Mycobacterium ulcerans Agy99]
gi|118571044|gb|ABL05795.1| conserved hypothetical lipoprotein, LppR_1 [Mycobacterium ulcerans
Agy99]
Length=247
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/193 (27%), Positives = 87/193 (46%), Gaps = 20/193 (10%)
Query 65 LPPF-PPVFGGSDSLGDS---DVSARPADCVGVGYLTQRNVYRSVEVKSVA-RVSWRHDG 119
LPP PP+ G L + + +A P +C+G R Y V++ A + W +D
Sbjct 63 LPPHSPPMVGDIGVLPNGIRDNSAAAPIECLGAIAPAMRISYEVAPVRAAALQDYWNYD- 121
Query 120 SSVKVDDVDEGVVALPSAAAADDLFARFSAQWKECDGTTLTVPASAFGQ----RSITDVR 175
S V + L S+ A LFA F+ QW++C+G T+T+ +T+VR
Sbjct 122 SGVVASSATVAAIKLASSDDAQRLFASFTQQWRQCEGRTVTMYTHDRSDTELYSKVTEVR 181
Query 176 VADSVVAATVSLRRGTHSILASVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTS 235
+++AT+ H+ P RAVGV+G+ + + V + P T
Sbjct 182 TDGPILSATIISWDNHHT--PQSPVERAVGVQGDVLADAKVALRPHSQP--------GTR 231
Query 236 AVDIAHAMMDRIS 248
A+++ M+ ++S
Sbjct 232 AIELVKVMLRKVS 244
>gi|108800458|ref|YP_640655.1| protein LppR [Mycobacterium sp. MCS]
gi|119869587|ref|YP_939539.1| protein LppR [Mycobacterium sp. KMS]
gi|126436082|ref|YP_001071773.1| protein LppR [Mycobacterium sp. JLS]
gi|108770877|gb|ABG09599.1| LppR [Mycobacterium sp. MCS]
gi|119695676|gb|ABL92749.1| LppR [Mycobacterium sp. KMS]
gi|126235882|gb|ABN99282.1| LppR [Mycobacterium sp. JLS]
Length=241
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 79/248 (32%), Positives = 108/248 (44%), Gaps = 32/248 (12%)
Query 13 AVFLAAGCTTTTTG----KAGLAPNAVPRPLMGSLIQRVPLDGA---ALSTLLNQPFQAL 65
A L+AGCT T G A A ++ R L L L A A + L+ Q +
Sbjct 13 ACLLSAGCTATVDGVAVDPAPAATHSAARALEPVLPTTEELSDALDIAPTGLMGQLVE-- 70
Query 66 PPFPPVFGGSDSL--GDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVK 123
GG+D+L G A P +CV Y Q+ VY + V+SVA SW
Sbjct 71 -------GGADTLLRGVDRSQATPVECVSTTYRLQQAVYGASSVRSVASRSWAAGSVDGP 123
Query 124 VDDVDEGVVALPSAAAADDLFARFSAQWKECDGTTLTVPASAFG---QRSITDVRVADSV 180
GVV L S A FA + W CDG T+ + G Q SI DV V D V
Sbjct 124 ALSGFFGVVQLGSTEEAAAFFATAADDWARCDGETVVLDRGGPGAGEQSSIADVTVDDRV 183
Query 181 VAATVSLRRGTHSILASVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDIA 240
V+A V H + P RA+GV G+ +V+V ++ + G AD AVD+A
Sbjct 184 VSAVV-----VHGAGSGTPIQRALGVAGDAIVDVEISDI---AGARTGGAD---GAVDVA 232
Query 241 HAMMDRIS 248
M+ +++
Sbjct 233 QIMLGKLT 240
>gi|120404838|ref|YP_954667.1| hypothetical protein Mvan_3880 [Mycobacterium vanbaalenii PYR-1]
gi|119957656|gb|ABM14661.1| serine/threonine protein kinase [Mycobacterium vanbaalenii PYR-1]
Length=228
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/156 (29%), Positives = 69/156 (45%), Gaps = 22/156 (14%)
Query 15 FLAAGCTTTTTGKAGLAPNAVPRPLMGSLIQR----VPLDGAALSTLLNQPFQALPPFPP 70
A CT+T G A + P+A P + G L +R V LD A ++ LLN P
Sbjct 10 LWATACTSTVDGTA-VRPDAAPSAVAGVLTERDLDAVLLDSAEIAALLNSPD------IE 62
Query 71 VFGGSDSLGDSDVSARPADCVGVGYLTQRNVYRSVEVKSV-ARVSWRHDGSSVKVDD--- 126
V D + D+ +C+G Y + VY S +V R++ S DD
Sbjct 63 VTDEIDEMTDTSADVSNPECLGALYTAEDPVYESTGYTAVLTRLA------SEPGDDNEH 116
Query 127 -VDEGVVALPSAAAADDLFARFSAQWKECDGTTLTV 161
V+E V +P+A A+ R + +W +C G +++
Sbjct 117 WVEESAVLVPTAEDAEQFVERSAREWDDCAGRQVSI 152
>gi|183984142|ref|YP_001852433.1| transmembrane serine/threonine-protein kinase [Mycobacterium
marinum M]
gi|183177468|gb|ACC42578.1| transmembrane serine/threonine-protein kinase [Mycobacterium
marinum M]
Length=667
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 43/167 (26%), Positives = 69/167 (42%), Gaps = 13/167 (7%)
Query 77 SLGDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVKVDD--VDEGVVAL 134
S+ S V+ +C G Y +Q VY +++ + G + +D V++ VV+
Sbjct 507 SMDASPVTLSLPECQGALYTSQDPVYSGTGYTAISGLVASEPGDN---NDHWVNQAVVSF 563
Query 135 PSAAAADDLFARFSAQWKECDGTTLTVPASAFGQRSITDVRVADSVVAATVSLRRGTHSI 194
PSAA A + +WK C G T+TV + R V + + G
Sbjct 564 PSAAKASSFVETMAGKWKNCAGKTVTVTNKSKTYRWTFAQVVGSPPRITMLETQEGAEGW 623
Query 195 LASVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDIAH 241
RA+ V N +V++ + IT DQG A ++ VD H
Sbjct 624 ECQ----RAMSVANNVIVDINSCGYHIT---DQGGA-LADKIVDKIH 662
>gi|333991145|ref|YP_004523759.1| hypothetical protein JDM601_2505 [Mycobacterium sp. JDM601]
gi|333487113|gb|AEF36505.1| lipoprotein LppH [Mycobacterium sp. JDM601]
Length=234
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/107 (30%), Positives = 46/107 (43%), Gaps = 2/107 (1%)
Query 76 DSLGDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVKVDDVDEGVVALP 135
D L D + +P +C+ V + Q VY +V R DG VD+ VV P
Sbjct 78 DVLPDDSATMQPRECLAVDGVAQEQVYARSGFSAV-REQSVSDGED-NAHFVDQAVVLFP 135
Query 136 SAAAADDLFARFSAQWKECDGTTLTVPASAFGQRSITDVRVADSVVA 182
+A A+ F + QW EC T T S + I+++ S VA
Sbjct 136 TAEQAEAFFEASAKQWPECHEYTHTQSGSEWTAGRISNIEGVLSTVA 182
>gi|240169523|ref|ZP_04748182.1| hypothetical protein MkanA1_09431 [Mycobacterium kansasii ATCC
12478]
Length=163
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/137 (28%), Positives = 56/137 (41%), Gaps = 6/137 (4%)
Query 84 SARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVKVDDVDEGVVALPSAAAADDL 143
+A P DC G+ + VY A V H V + +VA P+A A+
Sbjct 14 TADPPDCAGIWAPGMKQVYGGTRFID-ALVEEIHGPGDVYPKLTLQSLVAFPTAKDAEAF 72
Query 144 FARFSAQWKECDGTTLTVPASAFGQRSITDVRVADSVVAATVSLRRGTHSILASVPQARA 203
F + +W C T + V G ++ D +V DSV+ + GT RA
Sbjct 73 FEDIAPKWDHCARTEVLVNRHEGGTIAVGDPKVLDSVLTVSWVKTGGT-----GWGCQRA 127
Query 204 VGVRGNCVVEVAVTFFG 220
+ R N V+++ V FG
Sbjct 128 LMPRSNVVIDMRVCDFG 144
>gi|296170175|ref|ZP_06851770.1| non-specific serine/threonine protein kinase [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295895167|gb|EFG74883.1| non-specific serine/threonine protein kinase [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=625
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/141 (27%), Positives = 55/141 (40%), Gaps = 8/141 (5%)
Query 89 DCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVKVDDVDEGVVALPSAAAADDLFARFS 148
DC G Y TQ VY +V+ + G + V++ VV PSA A D +
Sbjct 480 DCQGALYTTQSTVYAGTGFSAVSGLVSSEPGDNYD-HWVNQAVVLFPSADKAKDFLQTSA 538
Query 149 AQWKECDGTTLTVPASAFGQRSITDVRVADSVVAATVSLRRGTHSILASVPQARAVGVRG 208
+WK C G T+TV R + A + + G RA+ V
Sbjct 539 GKWKGCAGKTVTVTNKGKTYRWTFEQVQGGPPKIAVLDTQEGADGWECQ----RAMSVAN 594
Query 209 NCVVEVAVTFFGITHPSDQGS 229
N +V+V + H DQG+
Sbjct 595 NVIVDVNACGY---HIVDQGT 612
>gi|169245915|gb|ACA50936.1| transmembrane serine/threonine-protein kinase [Mycobacterium
marinum DL240490]
Length=624
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/99 (28%), Positives = 37/99 (38%), Gaps = 4/99 (4%)
Query 78 LGDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHD----GSSVKVDDVDEGVVA 133
L D PA CVGV + + +Y +V+ V S+ GS + + V
Sbjct 436 LSDHSRQVDPASCVGVAFTGEHQMYSDTDVEEVKTQSFSQKNWIPGSQGGPQLLQQTVAV 495
Query 134 LPSAAAADDLFARFSAQWKECDGTTLTVPASAFGQRSIT 172
PSA +A A QW C T S F +T
Sbjct 496 FPSAESAQRFLASTQTQWNACTNATDPTAPSPFYNVGVT 534
>gi|49146103|ref|YP_025541.1| hypothetical protein MUP019 [Mycobacterium ulcerans Agy99]
gi|42414737|emb|CAE46830.1| probable conserved membrane protein [Mycobacterium ulcerans Agy99]
Length=344
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/149 (27%), Positives = 65/149 (44%), Gaps = 18/149 (12%)
Query 81 SDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVKVDDVDEGVVALPSAAAA 140
+D + PA C GV + VY + + R + + V V E V++ PSA A
Sbjct 194 TDTADHPA-CGGVLVNASKQVYDGSGWVAAQTQALRDNTTRQHV--VYESVISYPSARTA 250
Query 141 DDLFARFSAQWKECDGTTLTVPASAFGQRSITDVRVADSVVAATVSLRRGTHSILASVPQ 200
+ A+ + W+ C+G ++T A+++ A + ATV G + L +
Sbjct 251 TKMVAQEAHNWQRCNGRSITTTATSY---------PAQTWFVATVDNHDGMLTALMNQEG 301
Query 201 AR------AVGVRGNCVVEVAVTFFGITH 223
AR A+ R N V+++ V ITH
Sbjct 302 ARGWACQHALTARNNIVIDIEVCGADITH 330
>gi|254820140|ref|ZP_05225141.1| serine/threonine-protein kinase PknE [Mycobacterium intracellulare
ATCC 13950]
Length=588
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 47/164 (29%), Positives = 65/164 (40%), Gaps = 8/164 (4%)
Query 77 SLGDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVKVDDVDEGVVALPS 136
S S V+ DC G Y TQ VY SV+ + G + V++ VV PS
Sbjct 431 STDHSAVTVSTPDCQGALYTTQDPVYAGTGYTSVSGLVSSEPGDNYD-HWVNQAVVLFPS 489
Query 137 AAAADDLFARFSAQWKECDGTTLTVPASAFGQRSITDVRVADSVVAATVSLRRGTHSILA 196
A A + +WK C G T+TV + R T +V S T+ T
Sbjct 490 ADKAKSFLENSAEKWKGCAGKTVTVTNKSKTYR-WTFAQVQGSPPKITL---MDTQEGAD 545
Query 197 SVPQARAVGVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDIA 240
RA+ V N +V++ + H SDQG+ A IA
Sbjct 546 GWECQRALTVANNVIVDINACGY---HISDQGAQIADKIAARIA 586
>gi|209418064|ref|YP_002274093.1| hypothetical protein MULP_030 [Mycobacterium liflandii 128FXT]
gi|169409196|gb|ACA57602.1| conserved membrane protein [Mycobacterium liflandii 128FXT]
Length=344
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/103 (29%), Positives = 48/103 (47%), Gaps = 15/103 (14%)
Query 127 VDEGVVALPSAAAADDLFARFSAQWKECDGTTLTVPASAFGQRSITDVRVADSVVAATVS 186
V E V++ PSA A + A+ + W+ C+G ++T A+++ A + ATV
Sbjct 237 VYESVISYPSARTATKMVAQEAHSWQRCNGRSITTTATSY---------PAQTWFVATVD 287
Query 187 LRRGTHSILASVPQAR------AVGVRGNCVVEVAVTFFGITH 223
G + L + AR A+ R N V+++ V ITH
Sbjct 288 NHDGMLTALMNQEGARGWACQHALTARNNIVIDIEVCGADITH 330
>gi|296164614|ref|ZP_06847181.1| possible lipoprotein LppH [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295900033|gb|EFG79472.1| possible lipoprotein LppH [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=235
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 40/156 (26%), Positives = 64/156 (42%), Gaps = 9/156 (5%)
Query 84 SARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVKVDDVDEGVVALPSAAAADDL 143
+A P +C G+ VYR A+ + H V + +VA P+A A +
Sbjct 86 TADPPECAGIWAPGMAEVYRDTRFID-AQSAELHGPGDGYVKLTLQALVAYPTAKDAGAV 144
Query 144 FARFSAQWKECDGTTLTVPASAFGQRSITDVRVADSVVAATVSLRRGTHSILASVPQARA 203
F + +W C T + V G ++ D RV D+ + + GT RA
Sbjct 145 FEDLTRKWDHCARTEVLVNRHEGGTIAVGDPRVVDNTLMVSWEKTGGT-----GWGCERA 199
Query 204 VGVRGNCVVEVAVTFFGITHPSDQGSADISTSAVDI 239
+ R N V+++ V FG SDQ + ++ A I
Sbjct 200 LMPRSNVVIDMRVCDFG---GSDQAAELVNKVASRI 232
>gi|254818735|ref|ZP_05223736.1| PknM [Mycobacterium intracellulare ATCC 13950]
Length=247
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/101 (29%), Positives = 47/101 (47%), Gaps = 3/101 (2%)
Query 119 GSSVKVDDVDEGVVALPSAAAADDLFARFSAQWKECDGTTLTVPASAFG---QRSITDVR 175
G+ ++ DV + VV PS A+ F+ S +W C TVPA Q + V
Sbjct 124 GNQLESPDVYQFVVLYPSPEQANAFFSTSSQRWPACANRQDTVPADGTHPELQWKVRQVS 183
Query 176 VADSVVAATVSLRRGTHSILASVPQARAVGVRGNCVVEVAV 216
A+ V++ +V + ++P RA+ R N V++V V
Sbjct 184 NANGVLSTSVIVTVNGDGTNVTMPCQRALTARRNVVIDVDV 224
>gi|240172634|ref|ZP_04751293.1| transmembrane serine/threonine-protein kinase [Mycobacterium
kansasii ATCC 12478]
Length=273
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/153 (27%), Positives = 60/153 (40%), Gaps = 10/153 (6%)
Query 77 SLGDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVKVDDVDEGVVALPS 136
S+ S V+ DC Y +Q VY ++ + G + V++ VVA PS
Sbjct 114 SMDTSPVTLSLPDCQAALYTSQDPVYAGTGYTGISGLVSSEPGDTYD-HWVNQAVVAFPS 172
Query 137 AAAADDLFARFSAQWKECDGTTLTVPASAFGQR-SITDVRVADSVVAATVSLRRGTHSIL 195
A A + +WK C G T+TV R + DV V + + G
Sbjct 173 ADKARSFLQSAAGKWKNCAGKTVTVTNQGKTYRWTFADV-VGSPPKMTVIDTQEGADGWE 231
Query 196 ASVPQARAVGVRGNCVVEVAVTFFGITHPSDQG 228
RA+ V N +V++ + IT DQG
Sbjct 232 CQ----RAMSVANNVIVDINACGYQIT---DQG 257
>gi|169245971|gb|ACA50992.1| hypothetical protein MUDP_082 [Mycobacterium marinum DL240490]
Length=314
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/103 (28%), Positives = 47/103 (46%), Gaps = 15/103 (14%)
Query 127 VDEGVVALPSAAAADDLFARFSAQWKECDGTTLTVPASAFGQRSITDVRVADSVVAATVS 186
V E V++ PSA + A+ + W+ C+G ++T A+++ A + ATV
Sbjct 207 VYESVISYPSACTVTKMVAQEAHSWQRCNGRSITTTATSY---------PAQTWFVATVD 257
Query 187 LRRGTHSILASVPQAR------AVGVRGNCVVEVAVTFFGITH 223
G + L + AR A+ R N V+++ V ITH
Sbjct 258 NHDGMLTALMNQEGARGWACQHALTARNNIVIDIEVCGADITH 300
>gi|296166291|ref|ZP_06848729.1| PknM protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295898386|gb|EFG77954.1| PknM protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=249
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/99 (29%), Positives = 47/99 (48%), Gaps = 3/99 (3%)
Query 119 GSSVKVDDVDEGVVALPSAAAADDLFARFSAQWKECDGTTLTVPASAFG---QRSITDVR 175
G++ + +V + VV P+ A+ F S +W C T PA + Q + V
Sbjct 127 GNNRESPEVYQFVVLFPAPDQANAFFNTSSQRWPACANRLDTAPADSNHPELQWKVGQVD 186
Query 176 VADSVVAATVSLRRGTHSILASVPQARAVGVRGNCVVEV 214
A+ +++ TV+L S+P RA+ VR N V++V
Sbjct 187 NANGILSTTVNLTINGSGGNVSMPCQRALTVRNNVVIDV 225
>gi|289442702|ref|ZP_06432446.1| probable transmembrane serine/threonine-protein kinase H pknH
[Mycobacterium tuberculosis T46]
gi|289415621|gb|EFD12861.1| probable transmembrane serine/threonine-protein kinase H pknH
[Mycobacterium tuberculosis T46]
Length=534
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query 77 SLGDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVKVDDVDEGVVALPS 136
S+ S V+ DC G Y +Q VY ++ + G + + V++ VVA P+
Sbjct 377 SMDSSPVTVSLPDCQGALYTSQDPVYAGTGYTAINGLISSEPGDNYE-HWVNQAVVAFPT 435
Query 137 AAAADDLFARFSAQWKECDGTTLTVPASAFGQR-SITDVR 175
A A + +WK C G T+TV A R + DV+
Sbjct 436 ADKARAFVQTSADKWKNCAGKTVTVTNKAKTYRWTFADVK 475
>gi|339297889|gb|AEJ49999.1| putative transmembrane serine/threonine-protein kinase H pknH
[Mycobacterium tuberculosis CCDC5180]
Length=641
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query 77 SLGDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVKVDDVDEGVVALPS 136
S+ S V+ DC G Y +Q VY ++ + G + + V++ VVA P+
Sbjct 484 SMDSSPVTVSLPDCQGALYTSQDPVYAGTGYTAINGLISSEPGDNYE-HWVNQAVVAFPT 542
Query 137 AAAADDLFARFSAQWKECDGTTLTVPASAFGQR-SITDVR 175
A A + +WK C G T+TV A R + DV+
Sbjct 543 ADKARAFVQTSADKWKNCAGKTVTVTNKAKTYRWTFADVK 582
>gi|289554945|ref|ZP_06444155.1| transmembrane serine/threonine-protein kinase H pknH [Mycobacterium
tuberculosis KZN 605]
gi|289439577|gb|EFD22070.1| transmembrane serine/threonine-protein kinase H pknH [Mycobacterium
tuberculosis KZN 605]
Length=615
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query 77 SLGDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVKVDDVDEGVVALPS 136
S+ S V+ DC G Y +Q VY ++ + G + + V++ VVA P+
Sbjct 458 SMDSSPVTVSLPDCQGALYTSQDPVYAGTGYTAINGLISSEPGDNYE-HWVNQAVVAFPT 516
Query 137 AAAADDLFARFSAQWKECDGTTLTVPASAFGQR-SITDVR 175
A A + +WK C G T+TV A R + DV+
Sbjct 517 ADKARAFVQTSADKWKNCAGKTVTVTNKAKTYRWTFADVK 556
>gi|289446857|ref|ZP_06436601.1| transmembrane serine/threonine-protein kinase H pknH [Mycobacterium
tuberculosis CPHL_A]
gi|289419815|gb|EFD17016.1| transmembrane serine/threonine-protein kinase H pknH [Mycobacterium
tuberculosis CPHL_A]
Length=626
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query 77 SLGDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVKVDDVDEGVVALPS 136
S+ S V+ DC G Y +Q VY ++ + G + + V++ VVA P+
Sbjct 469 SMDSSPVTVSLPDCQGALYTSQDPVYAGTGYTAINGLISSEPGDNYE-HWVNQAVVAFPT 527
Query 137 AAAADDLFARFSAQWKECDGTTLTVPASAFGQR-SITDVR 175
A A + +WK C G T+TV A R + DV+
Sbjct 528 ADKARAFVQTSADKWKNCAGKTVTVTNKAKTYRWTFADVK 567
>gi|340626279|ref|YP_004744731.1| putative transmembrane serine/threonine-protein kinase H [Mycobacterium
canettii CIPT 140010059]
gi|340004469|emb|CCC43612.1| putative transmembrane serine/threonine-protein kinase H PKNH
(protein kinase H) (STPK H) [Mycobacterium canettii CIPT 140010059]
Length=626
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query 77 SLGDSDVSARPADCVGVGYLTQRNVYRSVEVKSVARVSWRHDGSSVKVDDVDEGVVALPS 136
S+ S V+ DC G Y +Q VY ++ + G + + V++ VVA P+
Sbjct 469 SMDSSPVTVSLPDCQGALYTSQDPVYAGTGYTAINGLISSEPGDNYE-HWVNQAVVAFPT 527
Query 137 AAAADDLFARFSAQWKECDGTTLTVPASAFGQR-SITDVR 175
A A + +WK C G T+TV A R + DV+
Sbjct 528 ADKARAFVQTSADKWKNCAGKTVTVTNKAKTYRWTFADVK 567
Lambda K H
0.319 0.132 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 362093846100
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40