BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2408 Length=239 Score E Sequences producing significant alignments: (Bits) Value gi|31793587|ref|NP_856080.1| PE family-like protein [Mycobacteri... 471 3e-131 gi|148662242|ref|YP_001283765.1| PE family protein [Mycobacteriu... 471 6e-131 gi|15841926|ref|NP_336963.1| PE family protein [Mycobacterium tu... 470 8e-131 gi|340627419|ref|YP_004745871.1| putative PE family-like protein... 469 1e-130 gi|289746189|ref|ZP_06505567.1| PE family protein [Mycobacterium... 467 8e-130 gi|306793567|ref|ZP_07431869.1| PE family protein [Mycobacterium... 74.3 1e-11 gi|306780127|ref|ZP_07418464.1| PE family protein [Mycobacterium... 73.9 2e-11 gi|308375776|ref|ZP_07668107.1| PE family protein [Mycobacterium... 73.9 2e-11 gi|323719340|gb|EGB28480.1| PE family protein [Mycobacterium tub... 73.6 2e-11 gi|308376912|ref|ZP_07440501.2| putative PE family protein [Myco... 73.6 2e-11 gi|289754209|ref|ZP_06513587.1| PE family-related protein [Mycob... 73.2 3e-11 gi|289745374|ref|ZP_06504752.1| PE family protein [Mycobacterium... 73.2 3e-11 gi|289443603|ref|ZP_06433347.1| PE PGRS family protein [Mycobact... 73.2 3e-11 gi|289447720|ref|ZP_06437464.1| PE-PGRS family protein [Mycobact... 73.2 3e-11 gi|306968229|ref|ZP_07480890.1| PE family protein [Mycobacterium... 72.8 4e-11 gi|340627111|ref|YP_004745563.1| PE-PGRS family protein [Mycobac... 72.8 4e-11 gi|15841589|ref|NP_336626.1| PE family-related protein [Mycobact... 72.8 4e-11 gi|289574779|ref|ZP_06455006.1| LOW QUALITY PROTEIN: PE-PGRS fam... 72.4 5e-11 gi|306797954|ref|ZP_07436256.1| PE family protein [Mycobacterium... 72.4 5e-11 gi|289745436|ref|ZP_06504814.1| predicted protein [Mycobacterium... 70.9 1e-10 gi|306789304|ref|ZP_07427626.1| putative PE family protein [Myco... 70.9 1e-10 gi|289554051|ref|ZP_06443261.1| predicted protein [Mycobacterium... 70.9 2e-10 gi|306803901|ref|ZP_07440569.1| putative PE family protein [Myco... 70.9 2e-10 gi|306780190|ref|ZP_07418527.1| hypothetical protein TMBG_00710 ... 70.9 2e-10 gi|306776413|ref|ZP_07414750.1| hypothetical protein TMAG_00351 ... 70.9 2e-10 gi|306798021|ref|ZP_07436323.1| putative PE family protein [Myco... 70.5 2e-10 gi|183984253|ref|YP_001852544.1| PE family protein [Mycobacteriu... 70.5 2e-10 gi|306808472|ref|ZP_07445140.1| putative PE family protein [Myco... 70.5 2e-10 gi|289447790|ref|ZP_06437534.1| PE-PGRS family protein [Mycobact... 70.5 2e-10 gi|254551200|ref|ZP_05141647.1| PE-PGRS family protein [Mycobact... 70.5 2e-10 gi|339632193|ref|YP_004723835.1| PE-PGRS family protein [Mycobac... 70.5 2e-10 gi|253798773|ref|YP_003031774.1| PE-PGRS family protein [Mycobac... 70.5 2e-10 gi|15841654|ref|NP_336691.1| PE_PGRS family protein [Mycobacteri... 70.5 2e-10 gi|297731742|ref|ZP_06960860.1| PE-PGRS family protein [Mycobact... 70.5 2e-10 gi|340627170|ref|YP_004745622.1| PE-PGRS family protein [Mycobac... 70.5 2e-10 gi|306972525|ref|ZP_07485186.1| putative PE family protein [Myco... 70.5 2e-10 gi|297634751|ref|ZP_06952531.1| PE-PGRS family protein [Mycobact... 70.1 2e-10 gi|31793342|ref|NP_855835.1| hypothetical protein Mb2186c [Mycob... 70.1 2e-10 gi|339298700|gb|AEJ50810.1| PE-PGRS family protein [Mycobacteriu... 70.1 2e-10 gi|289574848|ref|ZP_06455075.1| PE-PGRS family protein [Mycobact... 70.1 3e-10 gi|306784937|ref|ZP_07423259.1| hypothetical protein TMCG_00258 ... 70.1 3e-10 gi|307084818|ref|ZP_07493931.1| putative PE family protein [Myco... 70.1 3e-10 gi|307080232|ref|ZP_07489402.1| putative PE family protein [Myco... 70.1 3e-10 gi|306968298|ref|ZP_07480959.1| putative PE family protein [Myco... 70.1 3e-10 gi|323719259|gb|EGB28403.1| PE-PGRS family protein [Mycobacteriu... 70.1 3e-10 gi|313659076|ref|ZP_07815956.1| PE-PGRS family protein [Mycobact... 70.1 3e-10 gi|289443669|ref|ZP_06433413.1| PE-PGRS family protein [Mycobact... 70.1 3e-10 gi|183983708|ref|YP_001851999.1| PE-PGRS family protein, PE_PGRS... 69.3 4e-10 gi|306793630|ref|ZP_07431932.1| putative PE family protein [Myco... 69.3 4e-10 gi|167966823|ref|ZP_02549100.1| PE-PGRS family protein [Mycobact... 68.9 5e-10 >gi|31793587|ref|NP_856080.1| PE family-like protein [Mycobacterium bovis AF2122/97] gi|57116986|ref|YP_177880.1| PE family protein [Mycobacterium tuberculosis H37Rv] gi|121638289|ref|YP_978513.1| PE family-related protein [Mycobacterium bovis BCG str. Pasteur 1173P2] 10 more sequence titles Length=239 Score = 471 bits (1213), Expect = 3e-131, Method: Compositional matrix adjust. Identities = 238/239 (99%), Positives = 239/239 (100%), Gaps = 0/239 (0%) Query 1 VLIARPDILCSRGPEAMRAKAADLDLAAAAKTVGVQPAADQVAAAIAAILLSHAQIYQDI 60 +LIARPDILCSRGPEAMRAKAADLDLAAAAKTVGVQPAADQVAAAIAAILLSHAQIYQDI Sbjct 1 MLIARPDILCSRGPEAMRAKAADLDLAAAAKTVGVQPAADQVAAAIAAILLSHAQIYQDI 60 Query 61 STQMAAFHDQLVENRTADSTSYASAEANAQQSLLNAMDAPSWQQRRETVGEVGLPADPAG 120 STQMAAFHDQLVENRTADSTSYASAEANAQQSLLNAMDAPSWQQRRETVGEVGLPADPAG Sbjct 61 STQMAAFHDQLVENRTADSTSYASAEANAQQSLLNAMDAPSWQQRRETVGEVGLPADPAG 120 Query 121 SGTATAAVAAATTARAGSRSAAQATVAPIGGLKLRRESALSQPGDLHHHVEVGDALPRVD 180 SGTATAAVAAATTARAGSRSAAQATVAPIGGLKLRRESALSQPGDLHHHVEVGDALPRVD Sbjct 121 SGTATAAVAAATTARAGSRSAAQATVAPIGGLKLRRESALSQPGDLHHHVEVGDALPRVD 180 Query 181 PFQRGNVGVVAAYTHTDVLLGDLIVIGGVVVPPSTGPGLNPGMAAPVYRLSHHGITLRV 239 PFQRGNVGVVAAYTHTDVLLGDLIVIGGVVVPPSTGPGLNPGMAAPVYRLSHHGITLRV Sbjct 181 PFQRGNVGVVAAYTHTDVLLGDLIVIGGVVVPPSTGPGLNPGMAAPVYRLSHHGITLRV 239 >gi|148662242|ref|YP_001283765.1| PE family protein [Mycobacterium tuberculosis H37Ra] gi|148506394|gb|ABQ74203.1| PE family protein [Mycobacterium tuberculosis H37Ra] Length=324 Score = 471 bits (1211), Expect = 6e-131, Method: Compositional matrix adjust. Identities = 239/239 (100%), Positives = 239/239 (100%), Gaps = 0/239 (0%) Query 1 VLIARPDILCSRGPEAMRAKAADLDLAAAAKTVGVQPAADQVAAAIAAILLSHAQIYQDI 60 VLIARPDILCSRGPEAMRAKAADLDLAAAAKTVGVQPAADQVAAAIAAILLSHAQIYQDI Sbjct 86 VLIARPDILCSRGPEAMRAKAADLDLAAAAKTVGVQPAADQVAAAIAAILLSHAQIYQDI 145 Query 61 STQMAAFHDQLVENRTADSTSYASAEANAQQSLLNAMDAPSWQQRRETVGEVGLPADPAG 120 STQMAAFHDQLVENRTADSTSYASAEANAQQSLLNAMDAPSWQQRRETVGEVGLPADPAG Sbjct 146 STQMAAFHDQLVENRTADSTSYASAEANAQQSLLNAMDAPSWQQRRETVGEVGLPADPAG 205 Query 121 SGTATAAVAAATTARAGSRSAAQATVAPIGGLKLRRESALSQPGDLHHHVEVGDALPRVD 180 SGTATAAVAAATTARAGSRSAAQATVAPIGGLKLRRESALSQPGDLHHHVEVGDALPRVD Sbjct 206 SGTATAAVAAATTARAGSRSAAQATVAPIGGLKLRRESALSQPGDLHHHVEVGDALPRVD 265 Query 181 PFQRGNVGVVAAYTHTDVLLGDLIVIGGVVVPPSTGPGLNPGMAAPVYRLSHHGITLRV 239 PFQRGNVGVVAAYTHTDVLLGDLIVIGGVVVPPSTGPGLNPGMAAPVYRLSHHGITLRV Sbjct 266 PFQRGNVGVVAAYTHTDVLLGDLIVIGGVVVPPSTGPGLNPGMAAPVYRLSHHGITLRV 324 >gi|15841926|ref|NP_336963.1| PE family protein [Mycobacterium tuberculosis CDC1551] gi|148823611|ref|YP_001288365.1| PE family protein [Mycobacterium tuberculosis F11] gi|253798514|ref|YP_003031515.1| PE family protein [Mycobacterium tuberculosis KZN 1435] 47 more sequence titles Length=334 Score = 470 bits (1210), Expect = 8e-131, Method: Compositional matrix adjust. Identities = 239/239 (100%), Positives = 239/239 (100%), Gaps = 0/239 (0%) Query 1 VLIARPDILCSRGPEAMRAKAADLDLAAAAKTVGVQPAADQVAAAIAAILLSHAQIYQDI 60 VLIARPDILCSRGPEAMRAKAADLDLAAAAKTVGVQPAADQVAAAIAAILLSHAQIYQDI Sbjct 96 VLIARPDILCSRGPEAMRAKAADLDLAAAAKTVGVQPAADQVAAAIAAILLSHAQIYQDI 155 Query 61 STQMAAFHDQLVENRTADSTSYASAEANAQQSLLNAMDAPSWQQRRETVGEVGLPADPAG 120 STQMAAFHDQLVENRTADSTSYASAEANAQQSLLNAMDAPSWQQRRETVGEVGLPADPAG Sbjct 156 STQMAAFHDQLVENRTADSTSYASAEANAQQSLLNAMDAPSWQQRRETVGEVGLPADPAG 215 Query 121 SGTATAAVAAATTARAGSRSAAQATVAPIGGLKLRRESALSQPGDLHHHVEVGDALPRVD 180 SGTATAAVAAATTARAGSRSAAQATVAPIGGLKLRRESALSQPGDLHHHVEVGDALPRVD Sbjct 216 SGTATAAVAAATTARAGSRSAAQATVAPIGGLKLRRESALSQPGDLHHHVEVGDALPRVD 275 Query 181 PFQRGNVGVVAAYTHTDVLLGDLIVIGGVVVPPSTGPGLNPGMAAPVYRLSHHGITLRV 239 PFQRGNVGVVAAYTHTDVLLGDLIVIGGVVVPPSTGPGLNPGMAAPVYRLSHHGITLRV Sbjct 276 PFQRGNVGVVAAYTHTDVLLGDLIVIGGVVVPPSTGPGLNPGMAAPVYRLSHHGITLRV 334 >gi|340627419|ref|YP_004745871.1| putative PE family-like protein [Mycobacterium canettii CIPT 140010059] gi|340005609|emb|CCC44773.1| putative PE family-related protein [Mycobacterium canettii CIPT 140010059] Length=239 Score = 469 bits (1208), Expect = 1e-130, Method: Compositional matrix adjust. Identities = 236/239 (99%), Positives = 239/239 (100%), Gaps = 0/239 (0%) Query 1 VLIARPDILCSRGPEAMRAKAADLDLAAAAKTVGVQPAADQVAAAIAAILLSHAQIYQDI 60 +LIARPDILCSRGPEAMRAKAADLDLAAAAKTVGVQPAADQVAAAIAAILLSHAQIYQDI Sbjct 1 MLIARPDILCSRGPEAMRAKAADLDLAAAAKTVGVQPAADQVAAAIAAILLSHAQIYQDI 60 Query 61 STQMAAFHDQLVENRTADSTSYASAEANAQQSLLNAMDAPSWQQRRETVGEVGLPADPAG 120 STQMAAFHDQLVENRTADSTSYASAEANAQQSLLNAMDAPSW+QRRETVGEVGLPADPAG Sbjct 61 STQMAAFHDQLVENRTADSTSYASAEANAQQSLLNAMDAPSWKQRRETVGEVGLPADPAG 120 Query 121 SGTATAAVAAATTARAGSRSAAQATVAPIGGLKLRRESALSQPGDLHHHVEVGDALPRVD 180 SGTATAAVAAATTARAGSRSAAQATVAPIGGLKLRRESALSQPGDLHHHVEVGDALPRVD Sbjct 121 SGTATAAVAAATTARAGSRSAAQATVAPIGGLKLRRESALSQPGDLHHHVEVGDALPRVD 180 Query 181 PFQRGNVGVVAAYTHTDVLLGDLIVIGGVVVPPSTGPGLNPGMAAPVYRLSHHGITLRV 239 PFQRGNVGVVAAYTHTDVLLGDLIVIGGVVVPP+TGPGLNPGMAAPVYRLSHHGITLRV Sbjct 181 PFQRGNVGVVAAYTHTDVLLGDLIVIGGVVVPPTTGPGLNPGMAAPVYRLSHHGITLRV 239 >gi|289746189|ref|ZP_06505567.1| PE family protein [Mycobacterium tuberculosis 02_1987] gi|289758536|ref|ZP_06517914.1| PE family protein [Mycobacterium tuberculosis T85] gi|294994484|ref|ZP_06800175.1| PE family protein [Mycobacterium tuberculosis 210] gi|289686717|gb|EFD54205.1| PE family protein [Mycobacterium tuberculosis 02_1987] gi|289714100|gb|EFD78112.1| PE family protein [Mycobacterium tuberculosis T85] gi|326904025|gb|EGE50958.1| PE family protein [Mycobacterium tuberculosis W-148] Length=334 Score = 467 bits (1201), Expect = 8e-130, Method: Compositional matrix adjust. Identities = 238/239 (99%), Positives = 238/239 (99%), Gaps = 0/239 (0%) Query 1 VLIARPDILCSRGPEAMRAKAADLDLAAAAKTVGVQPAADQVAAAIAAILLSHAQIYQDI 60 VLIARPDILCSRGPEAMRAKAADLDLAAAAKTVGVQPAADQVAAAIAAILLSHAQIYQDI Sbjct 96 VLIARPDILCSRGPEAMRAKAADLDLAAAAKTVGVQPAADQVAAAIAAILLSHAQIYQDI 155 Query 61 STQMAAFHDQLVENRTADSTSYASAEANAQQSLLNAMDAPSWQQRRETVGEVGLPADPAG 120 STQMAAFHDQLVENRTADSTSYASAEANAQQSLLNAMDAPSWQQRRETVGEVGLPADPAG Sbjct 156 STQMAAFHDQLVENRTADSTSYASAEANAQQSLLNAMDAPSWQQRRETVGEVGLPADPAG 215 Query 121 SGTATAAVAAATTARAGSRSAAQATVAPIGGLKLRRESALSQPGDLHHHVEVGDALPRVD 180 SGTATAAVAAATTARAGSRSAAQATVAPIGGLKLRRESALSQPGDLHHHVEVGDALPRVD Sbjct 216 SGTATAAVAAATTARAGSRSAAQATVAPIGGLKLRRESALSQPGDLHHHVEVGDALPRVD 275 Query 181 PFQRGNVGVVAAYTHTDVLLGDLIVIGGVVVPPSTGPGLNPGMAAPVYRLSHHGITLRV 239 PFQRGNVGVVAAYTHTDVLLGDLIVIGGVVVPPST PGLNPGMAAPVYRLSHHGITLRV Sbjct 276 PFQRGNVGVVAAYTHTDVLLGDLIVIGGVVVPPSTVPGLNPGMAAPVYRLSHHGITLRV 334 >gi|306793567|ref|ZP_07431869.1| PE family protein [Mycobacterium tuberculosis SUMu005] gi|308338023|gb|EFP26874.1| PE family protein [Mycobacterium tuberculosis SUMu005] Length=302 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 39/66 (60%), Positives = 50/66 (76%), Gaps = 1/66 (1%) Query 37 PAADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANAQQSLLN 95 PAAD+V+A IAA+ + AQ YQ +S Q AAFHD+ V+ A SYASAE ANAQQ+LLN Sbjct 42 PAADEVSAGIAALFGAQAQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLN 101 Query 96 AMDAPS 101 A++AP+ Sbjct 102 AVNAPT 107 >gi|306780127|ref|ZP_07418464.1| PE family protein [Mycobacterium tuberculosis SUMu002] gi|308326955|gb|EFP15806.1| PE family protein [Mycobacterium tuberculosis SUMu002] Length=295 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 39/66 (60%), Positives = 50/66 (76%), Gaps = 1/66 (1%) Query 37 PAADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANAQQSLLN 95 PAAD+V+A IAA+ + AQ YQ +S Q AAFHD+ V+ A SYASAE ANAQQ+LLN Sbjct 42 PAADEVSAGIAALFGAQAQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLN 101 Query 96 AMDAPS 101 A++AP+ Sbjct 102 AVNAPT 107 >gi|308375776|ref|ZP_07668107.1| PE family protein [Mycobacterium tuberculosis SUMu007] gi|308345199|gb|EFP34050.1| PE family protein [Mycobacterium tuberculosis SUMu007] Length=259 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 39/66 (60%), Positives = 50/66 (76%), Gaps = 1/66 (1%) Query 37 PAADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANAQQSLLN 95 PAAD+V+A IAA+ + AQ YQ +S Q AAFHD+ V+ A SYASAE ANAQQ+LLN Sbjct 78 PAADEVSAGIAALFGAQAQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLN 137 Query 96 AMDAPS 101 A++AP+ Sbjct 138 AVNAPT 143 >gi|323719340|gb|EGB28480.1| PE family protein [Mycobacterium tuberculosis CDC1551A] Length=326 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 39/66 (60%), Positives = 50/66 (76%), Gaps = 1/66 (1%) Query 37 PAADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANAQQSLLN 95 PAAD+V+A IAA+ + AQ YQ +S Q AAFHD+ V+ A SYASAE ANAQQ+LLN Sbjct 42 PAADEVSAGIAALFGAQAQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLN 101 Query 96 AMDAPS 101 A++AP+ Sbjct 102 AVNAPT 107 >gi|308376912|ref|ZP_07440501.2| putative PE family protein [Mycobacterium tuberculosis SUMu008] gi|308349527|gb|EFP38378.1| putative PE family protein [Mycobacterium tuberculosis SUMu008] Length=236 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 39/66 (60%), Positives = 50/66 (76%), Gaps = 1/66 (1%) Query 37 PAADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANAQQSLLN 95 PAAD+V+A IAA+ + AQ YQ +S Q AAFHD+ V+ A SYASAE ANAQQ+LLN Sbjct 78 PAADEVSAGIAALFGAQAQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLN 137 Query 96 AMDAPS 101 A++AP+ Sbjct 138 AVNAPT 143 >gi|289754209|ref|ZP_06513587.1| PE family-related protein [Mycobacterium tuberculosis EAS054] gi|289694796|gb|EFD62225.1| PE family-related protein [Mycobacterium tuberculosis EAS054] Length=252 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 39/66 (60%), Positives = 50/66 (76%), Gaps = 1/66 (1%) Query 37 PAADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANAQQSLLN 95 PAAD+V+A IAA+ + AQ YQ +S Q AAFHD+ V+ A SYASAE ANAQQ+LLN Sbjct 42 PAADEVSAGIAALFGAQAQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLN 101 Query 96 AMDAPS 101 A++AP+ Sbjct 102 AVNAPT 107 >gi|289745374|ref|ZP_06504752.1| PE family protein [Mycobacterium tuberculosis 02_1987] gi|289685902|gb|EFD53390.1| PE family protein [Mycobacterium tuberculosis 02_1987] Length=366 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 39/66 (60%), Positives = 50/66 (76%), Gaps = 1/66 (1%) Query 37 PAADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANAQQSLLN 95 PAAD+V+A IAA+ + AQ YQ +S Q AAFHD+ V+ A SYASAE ANAQQ+LLN Sbjct 42 PAADEVSAGIAALFGAQAQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLN 101 Query 96 AMDAPS 101 A++AP+ Sbjct 102 AVNAPT 107 >gi|289443603|ref|ZP_06433347.1| PE PGRS family protein [Mycobacterium tuberculosis T46] gi|289416522|gb|EFD13762.1| PE PGRS family protein [Mycobacterium tuberculosis T46] Length=491 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 39/66 (60%), Positives = 50/66 (76%), Gaps = 1/66 (1%) Query 37 PAADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANAQQSLLN 95 PAAD+V+A IAA+ + AQ YQ +S Q AAFHD+ V+ A SYASAE ANAQQ+LLN Sbjct 42 PAADEVSAGIAALFGAQAQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLN 101 Query 96 AMDAPS 101 A++AP+ Sbjct 102 AVNAPT 107 >gi|289447720|ref|ZP_06437464.1| PE-PGRS family protein [Mycobacterium tuberculosis CPHL_A] gi|289420678|gb|EFD17879.1| PE-PGRS family protein [Mycobacterium tuberculosis CPHL_A] Length=304 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 39/66 (60%), Positives = 50/66 (76%), Gaps = 1/66 (1%) Query 37 PAADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANAQQSLLN 95 PAAD+V+A IAA+ + AQ YQ +S Q AAFHD+ V+ A SYASAE ANAQQ+LLN Sbjct 42 PAADEVSAGIAALFGAQAQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLN 101 Query 96 AMDAPS 101 A++AP+ Sbjct 102 AVNAPT 107 >gi|306968229|ref|ZP_07480890.1| PE family protein [Mycobacterium tuberculosis SUMu009] gi|308354156|gb|EFP43007.1| PE family protein [Mycobacterium tuberculosis SUMu009] Length=223 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 39/66 (60%), Positives = 50/66 (76%), Gaps = 1/66 (1%) Query 37 PAADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANAQQSLLN 95 PAAD+V+A IAA+ + AQ YQ +S Q AAFHD+ V+ A SYASAE ANAQQ+LLN Sbjct 42 PAADEVSAGIAALFGAQAQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLN 101 Query 96 AMDAPS 101 A++AP+ Sbjct 102 AVNAPT 107 >gi|340627111|ref|YP_004745563.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059] gi|340005301|emb|CCC44457.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059] Length=489 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 39/66 (60%), Positives = 50/66 (76%), Gaps = 1/66 (1%) Query 37 PAADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANAQQSLLN 95 PAAD+V+A IAA+ + AQ YQ +S Q AAFHD+ V+ A SYASAE ANAQQ+LLN Sbjct 42 PAADEVSAGIAALFGAQAQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLN 101 Query 96 AMDAPS 101 A++AP+ Sbjct 102 AVNAPT 107 >gi|15841589|ref|NP_336626.1| PE family-related protein [Mycobacterium tuberculosis CDC1551] gi|31793281|ref|NP_855774.1| hypothetical protein Mb2125c [Mycobacterium bovis AF2122/97] gi|121637983|ref|YP_978207.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 1173P2] 16 more sequence titles Length=491 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 39/66 (60%), Positives = 50/66 (76%), Gaps = 1/66 (1%) Query 37 PAADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANAQQSLLN 95 PAAD+V+A IAA+ + AQ YQ +S Q AAFHD+ V+ A SYASAE ANAQQ+LLN Sbjct 42 PAADEVSAGIAALFGAQAQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLN 101 Query 96 AMDAPS 101 A++AP+ Sbjct 102 AVNAPT 107 >gi|289574779|ref|ZP_06455006.1| LOW QUALITY PROTEIN: PE-PGRS family protein [Mycobacterium tuberculosis K85] gi|289539210|gb|EFD43788.1| LOW QUALITY PROTEIN: PE-PGRS family protein [Mycobacterium tuberculosis K85] Length=490 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 39/66 (60%), Positives = 50/66 (76%), Gaps = 1/66 (1%) Query 37 PAADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANAQQSLLN 95 PAAD+V+A IAA+ + AQ YQ +S Q AAFHD+ V+ A SYASAE ANAQQ+LLN Sbjct 42 PAADEVSAGIAALFGAQAQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLN 101 Query 96 AMDAPS 101 A++AP+ Sbjct 102 AVNAPT 107 >gi|306797954|ref|ZP_07436256.1| PE family protein [Mycobacterium tuberculosis SUMu006] gi|308341734|gb|EFP30585.1| PE family protein [Mycobacterium tuberculosis SUMu006] Length=350 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 39/66 (60%), Positives = 50/66 (76%), Gaps = 1/66 (1%) Query 37 PAADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANAQQSLLN 95 PAAD+V+A IAA+ + AQ YQ +S Q AAFHD+ V+ A SYASAE ANAQQ+LLN Sbjct 42 PAADEVSAGIAALFGAQAQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLN 101 Query 96 AMDAPS 101 A++AP+ Sbjct 102 AVNAPT 107 >gi|289745436|ref|ZP_06504814.1| predicted protein [Mycobacterium tuberculosis 02_1987] gi|289685964|gb|EFD53452.1| predicted protein [Mycobacterium tuberculosis 02_1987] Length=207 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 49/100 (49%), Positives = 64/100 (64%), Gaps = 12/100 (12%) Query 14 PEAMRAKAADL----------DLAAAAKTVGVQPA-ADQVAAAIAAILLSHAQIYQDIST 62 PE M A A DL AAA T+G+ A AD+V+ AI+A+ SHAQ YQ +S Sbjct 4 PELMAAAATDLANIGSSISAASAAAAGPTMGILAAGADEVSVAISALFGSHAQGYQTLSA 63 Query 63 QMAAFHDQLVENRTADSTSYASAE-ANAQQSLLNAMDAPS 101 Q+AA+H+Q V A + SYASAE AN QQ+LLNA++AP+ Sbjct 64 QLAAYHNQFVRALNAGAGSYASAEAANVQQTLLNAINAPT 103 >gi|306789304|ref|ZP_07427626.1| putative PE family protein [Mycobacterium tuberculosis SUMu004] gi|308334175|gb|EFP23026.1| putative PE family protein [Mycobacterium tuberculosis SUMu004] Length=193 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/72 (55%), Positives = 54/72 (75%), Gaps = 2/72 (2%) Query 32 TVGVQPA-ADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANA 89 T+G+ A AD+V+ AI+A+ SHAQ YQ +S Q+AA+H+Q V A + SYASAE AN Sbjct 36 TMGILAAGADEVSVAISALFGSHAQGYQTLSAQLAAYHNQFVRALNAGAGSYASAEAANV 95 Query 90 QQSLLNAMDAPS 101 QQ+LLNA++AP+ Sbjct 96 QQTLLNAINAPT 107 >gi|289554051|ref|ZP_06443261.1| predicted protein [Mycobacterium tuberculosis KZN 605] gi|289438683|gb|EFD21176.1| predicted protein [Mycobacterium tuberculosis KZN 605] Length=356 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/72 (55%), Positives = 54/72 (75%), Gaps = 2/72 (2%) Query 32 TVGVQPA-ADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANA 89 T+G+ A AD+V+ AI+A+ SHAQ YQ +S Q+AA+H+Q V A + SYASAE AN Sbjct 36 TMGILAAGADEVSVAISALFGSHAQGYQTLSAQLAAYHNQFVRALNAGAGSYASAEAANV 95 Query 90 QQSLLNAMDAPS 101 QQ+LLNA++AP+ Sbjct 96 QQTLLNAINAPT 107 >gi|306803901|ref|ZP_07440569.1| putative PE family protein [Mycobacterium tuberculosis SUMu008] gi|308349454|gb|EFP38305.1| putative PE family protein [Mycobacterium tuberculosis SUMu008] Length=194 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/72 (55%), Positives = 54/72 (75%), Gaps = 2/72 (2%) Query 32 TVGVQPA-ADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANA 89 T+G+ A AD+V+ AI+A+ SHAQ YQ +S Q+AA+H+Q V A + SYASAE AN Sbjct 36 TMGILAAGADEVSVAISALFGSHAQGYQTLSAQLAAYHNQFVRALNAGAGSYASAEAANV 95 Query 90 QQSLLNAMDAPS 101 QQ+LLNA++AP+ Sbjct 96 QQTLLNAINAPT 107 >gi|306780190|ref|ZP_07418527.1| hypothetical protein TMBG_00710 [Mycobacterium tuberculosis SUMu002] gi|308326906|gb|EFP15757.1| hypothetical protein TMBG_00710 [Mycobacterium tuberculosis SUMu002] Length=164 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/72 (55%), Positives = 54/72 (75%), Gaps = 2/72 (2%) Query 32 TVGVQPA-ADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANA 89 T+G+ A AD+V+ AI+A+ SHAQ YQ +S Q+AA+H+Q V A + SYASAE AN Sbjct 36 TMGILAAGADEVSVAISALFGSHAQGYQTLSAQLAAYHNQFVRALNAGAGSYASAEAANV 95 Query 90 QQSLLNAMDAPS 101 QQ+LLNA++AP+ Sbjct 96 QQTLLNAINAPT 107 >gi|306776413|ref|ZP_07414750.1| hypothetical protein TMAG_00351 [Mycobacterium tuberculosis SUMu001] gi|308215151|gb|EFO74550.1| hypothetical protein TMAG_00351 [Mycobacterium tuberculosis SUMu001] Length=204 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/72 (55%), Positives = 54/72 (75%), Gaps = 2/72 (2%) Query 32 TVGVQPA-ADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANA 89 T+G+ A AD+V+ AI+A+ SHAQ YQ +S Q+AA+H+Q V A + SYASAE AN Sbjct 36 TMGILAAGADEVSVAISALFGSHAQGYQTLSAQLAAYHNQFVRALNAGAGSYASAEAANV 95 Query 90 QQSLLNAMDAPS 101 QQ+LLNA++AP+ Sbjct 96 QQTLLNAINAPT 107 >gi|306798021|ref|ZP_07436323.1| putative PE family protein [Mycobacterium tuberculosis SUMu006] gi|308341660|gb|EFP30511.1| putative PE family protein [Mycobacterium tuberculosis SUMu006] Length=191 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/72 (55%), Positives = 54/72 (75%), Gaps = 2/72 (2%) Query 32 TVGVQPA-ADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANA 89 T+G+ A AD+V+ AI+A+ SHAQ YQ +S Q+AA+H+Q V A + SYASAE AN Sbjct 36 TMGILAAGADEVSVAISALFGSHAQGYQTLSAQLAAYHNQFVRALNAGAGSYASAEAANV 95 Query 90 QQSLLNAMDAPS 101 QQ+LLNA++AP+ Sbjct 96 QQTLLNAINAPT 107 >gi|183984253|ref|YP_001852544.1| PE family protein [Mycobacterium marinum M] gi|183177579|gb|ACC42689.1| PE family protein [Mycobacterium marinum M] Length=288 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/99 (45%), Positives = 65/99 (66%), Gaps = 11/99 (11%) Query 14 PEAMRAKAADL----------DLAAAAKTVGVQPAA-DQVAAAIAAILLSHAQIYQDIST 62 PEA+ A A+D+ + AA+A T GV AA DQV+A +AA+ SH +IYQ +S+ Sbjct 8 PEALTAAASDVAGIGTTISSANAAASAPTTGVLAAAGDQVSAQVAALFSSHGEIYQRLSS 67 Query 63 QMAAFHDQLVENRTADSTSYASAEANAQQSLLNAMDAPS 101 Q++ FHDQ + SYASAEANA ++LL+A+++P+ Sbjct 68 QLSTFHDQFAAALNTSANSYASAEANAAKTLLSAVNSPA 106 >gi|306808472|ref|ZP_07445140.1| putative PE family protein [Mycobacterium tuberculosis SUMu007] gi|308345152|gb|EFP34003.1| putative PE family protein [Mycobacterium tuberculosis SUMu007] Length=129 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/72 (55%), Positives = 54/72 (75%), Gaps = 2/72 (2%) Query 32 TVGVQPA-ADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANA 89 T+G+ A AD+V+ AI+A+ SHAQ YQ +S Q+AA+H+Q V A + SYASAE AN Sbjct 36 TMGILAAGADEVSVAISALFGSHAQGYQTLSAQLAAYHNQFVRALNAGAGSYASAEAANV 95 Query 90 QQSLLNAMDAPS 101 QQ+LLNA++AP+ Sbjct 96 QQTLLNAINAPT 107 >gi|289447790|ref|ZP_06437534.1| PE-PGRS family protein [Mycobacterium tuberculosis CPHL_A] gi|289420748|gb|EFD17949.1| PE-PGRS family protein [Mycobacterium tuberculosis CPHL_A] Length=621 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/72 (55%), Positives = 54/72 (75%), Gaps = 2/72 (2%) Query 32 TVGVQPA-ADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANA 89 T+G+ A AD+V+ AI+A+ SHAQ YQ +S Q+AA+H+Q V A + SYASAE AN Sbjct 36 TMGILAAGADEVSVAISALFGSHAQGYQTLSAQLAAYHNQFVRALNAGAGSYASAEAANV 95 Query 90 QQSLLNAMDAPS 101 QQ+LLNA++AP+ Sbjct 96 QQTLLNAINAPT 107 >gi|254551200|ref|ZP_05141647.1| PE-PGRS family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length=243 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/72 (55%), Positives = 54/72 (75%), Gaps = 2/72 (2%) Query 32 TVGVQPA-ADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANA 89 T+G+ A AD+V+ AI+A+ SHAQ YQ +S Q+AA+H+Q V A + SYASAE AN Sbjct 36 TMGILAAGADEVSVAISALFGSHAQGYQTLSAQLAAYHNQFVRALNAGAGSYASAEAANV 95 Query 90 QQSLLNAMDAPS 101 QQ+LLNA++AP+ Sbjct 96 QQTLLNAINAPT 107 >gi|339632193|ref|YP_004723835.1| PE-PGRS family protein [Mycobacterium africanum GM041182] gi|339331549|emb|CCC27245.1| PE-PGRS family protein [Mycobacterium africanum GM041182] Length=526 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/72 (55%), Positives = 54/72 (75%), Gaps = 2/72 (2%) Query 32 TVGVQPA-ADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANA 89 T+G+ A AD+V+ AI+A+ SHAQ YQ +S Q+AA+H+Q V A + SYASAE AN Sbjct 36 TMGILAAGADEVSVAISALFGSHAQGYQTLSAQLAAYHNQFVRALNAGAGSYASAEAANV 95 Query 90 QQSLLNAMDAPS 101 QQ+LLNA++AP+ Sbjct 96 QQTLLNAINAPT 107 >gi|253798773|ref|YP_003031774.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435] gi|253320276|gb|ACT24879.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435] gi|328458536|gb|AEB03959.1| hypothetical protein TBSG_01830 [Mycobacterium tuberculosis KZN 4207] Length=532 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/72 (55%), Positives = 54/72 (75%), Gaps = 2/72 (2%) Query 32 TVGVQPA-ADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANA 89 T+G+ A AD+V+ AI+A+ SHAQ YQ +S Q+AA+H+Q V A + SYASAE AN Sbjct 36 TMGILAAGADEVSVAISALFGSHAQGYQTLSAQLAAYHNQFVRALNAGAGSYASAEAANV 95 Query 90 QQSLLNAMDAPS 101 QQ+LLNA++AP+ Sbjct 96 QQTLLNAINAPT 107 >gi|15841654|ref|NP_336691.1| PE_PGRS family protein [Mycobacterium tuberculosis CDC1551] gi|57116953|ref|YP_177865.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Rv] gi|148661978|ref|YP_001283501.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra] 9 more sequence titles Length=532 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/72 (55%), Positives = 54/72 (75%), Gaps = 2/72 (2%) Query 32 TVGVQPA-ADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANA 89 T+G+ A AD+V+ AI+A+ SHAQ YQ +S Q+AA+H+Q V A + SYASAE AN Sbjct 36 TMGILAAGADEVSVAISALFGSHAQGYQTLSAQLAAYHNQFVRALNAGAGSYASAEAANV 95 Query 90 QQSLLNAMDAPS 101 QQ+LLNA++AP+ Sbjct 96 QQTLLNAINAPT 107 >gi|297731742|ref|ZP_06960860.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN R506] Length=207 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/72 (55%), Positives = 54/72 (75%), Gaps = 2/72 (2%) Query 32 TVGVQPA-ADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANA 89 T+G+ A AD+V+ AI+A+ SHAQ YQ +S Q+AA+H+Q V A + SYASAE AN Sbjct 36 TMGILAAGADEVSVAISALFGSHAQGYQTLSAQLAAYHNQFVRALNAGAGSYASAEAANV 95 Query 90 QQSLLNAMDAPS 101 QQ+LLNA++AP+ Sbjct 96 QQTLLNAINAPT 107 >gi|340627170|ref|YP_004745622.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059] gi|340005360|emb|CCC44518.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059] Length=526 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/72 (55%), Positives = 54/72 (75%), Gaps = 2/72 (2%) Query 32 TVGVQPA-ADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANA 89 T+G+ A AD+V+ AI+A+ SHAQ YQ +S Q+AA+H+Q V A + SYASAE AN Sbjct 36 TMGILAAGADEVSVAISALFGSHAQGYQTLSAQLAAYHNQFVRALNAGAGSYASAEAANV 95 Query 90 QQSLLNAMDAPS 101 QQ+LLNA++AP+ Sbjct 96 QQTLLNAINAPT 107 >gi|306972525|ref|ZP_07485186.1| putative PE family protein [Mycobacterium tuberculosis SUMu010] gi|308358028|gb|EFP46879.1| putative PE family protein [Mycobacterium tuberculosis SUMu010] Length=158 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/72 (55%), Positives = 54/72 (75%), Gaps = 2/72 (2%) Query 32 TVGVQPA-ADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANA 89 T+G+ A AD+V+ AI+A+ SHAQ YQ +S Q+AA+H+Q V A + SYASAE AN Sbjct 36 TMGILAAGADEVSVAISALFGSHAQGYQTLSAQLAAYHNQFVRALNAGAGSYASAEAANV 95 Query 90 QQSLLNAMDAPS 101 QQ+LLNA++AP+ Sbjct 96 QQTLLNAINAPT 107 >gi|297634751|ref|ZP_06952531.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 4207] Length=532 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/72 (55%), Positives = 54/72 (75%), Gaps = 2/72 (2%) Query 32 TVGVQPA-ADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANA 89 T+G+ A AD+V+ AI+A+ SHAQ YQ +S Q+AA+H+Q V A + SYASAE AN Sbjct 36 TMGILAAGADEVSVAISALFGSHAQGYQTLSAQLAAYHNQFVRALNAGAGSYASAEAANV 95 Query 90 QQSLLNAMDAPS 101 QQ+LLNA++AP+ Sbjct 96 QQTLLNAINAPT 107 >gi|31793342|ref|NP_855835.1| hypothetical protein Mb2186c [Mycobacterium bovis AF2122/97] gi|121638044|ref|YP_978268.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990538|ref|YP_002645225.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172] gi|31618934|emb|CAD97039.1| conserved hypothetical protein, PE_PGRS [Mycobacterium bovis AF2122/97] gi|121493692|emb|CAL72167.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224773651|dbj|BAH26457.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172] gi|341602082|emb|CCC64756.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Moreau RDJ] Length=490 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/72 (55%), Positives = 54/72 (75%), Gaps = 2/72 (2%) Query 32 TVGVQPA-ADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANA 89 T+G+ A AD+V+ AI+A+ SHAQ YQ +S Q+AA+H+Q V A + SYASAE AN Sbjct 36 TMGILAAGADEVSVAISALFGSHAQGYQTLSAQLAAYHNQFVRALNAGAGSYASAEAANV 95 Query 90 QQSLLNAMDAPS 101 QQ+LLNA++AP+ Sbjct 96 QQTLLNAINAPT 107 >gi|339298700|gb|AEJ50810.1| PE-PGRS family protein [Mycobacterium tuberculosis CCDC5180] Length=532 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/72 (55%), Positives = 54/72 (75%), Gaps = 2/72 (2%) Query 32 TVGVQPA-ADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANA 89 T+G+ A AD+V+ AI+A+ SHAQ YQ +S Q+AA+H+Q V A + SYASAE AN Sbjct 36 TMGILAAGADEVSVAISALFGSHAQGYQTLSAQLAAYHNQFVRALNAGAGSYASAEAANV 95 Query 90 QQSLLNAMDAPS 101 QQ+LLNA++AP+ Sbjct 96 QQTLLNAINAPT 107 >gi|289574848|ref|ZP_06455075.1| PE-PGRS family protein [Mycobacterium tuberculosis K85] gi|289539279|gb|EFD43857.1| PE-PGRS family protein [Mycobacterium tuberculosis K85] Length=139 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/72 (55%), Positives = 54/72 (75%), Gaps = 2/72 (2%) Query 32 TVGVQPA-ADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANA 89 T+G+ A AD+V+ AI+A+ SHAQ YQ +S Q+AA+H+Q V A + SYASAE AN Sbjct 36 TMGILAAGADEVSVAISALFGSHAQGYQTLSAQLAAYHNQFVRALNAGAGSYASAEAANV 95 Query 90 QQSLLNAMDAPS 101 QQ+LLNA++AP+ Sbjct 96 QQTLLNAINAPT 107 >gi|306784937|ref|ZP_07423259.1| hypothetical protein TMCG_00258 [Mycobacterium tuberculosis SUMu003] gi|308330342|gb|EFP19193.1| hypothetical protein TMCG_00258 [Mycobacterium tuberculosis SUMu003] Length=184 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/72 (55%), Positives = 54/72 (75%), Gaps = 2/72 (2%) Query 32 TVGVQPA-ADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANA 89 T+G+ A AD+V+ AI+A+ SHAQ YQ +S Q+AA+H+Q V A + SYASAE AN Sbjct 36 TMGILAAGADEVSVAISALFGSHAQGYQTLSAQLAAYHNQFVRALNAGAGSYASAEAANV 95 Query 90 QQSLLNAMDAPS 101 QQ+LLNA++AP+ Sbjct 96 QQTLLNAINAPT 107 >gi|307084818|ref|ZP_07493931.1| putative PE family protein [Mycobacterium tuberculosis SUMu012] gi|308365610|gb|EFP54461.1| putative PE family protein [Mycobacterium tuberculosis SUMu012] Length=176 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/72 (55%), Positives = 54/72 (75%), Gaps = 2/72 (2%) Query 32 TVGVQPA-ADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANA 89 T+G+ A AD+V+ AI+A+ SHAQ YQ +S Q+AA+H+Q V A + SYASAE AN Sbjct 36 TMGILAAGADEVSVAISALFGSHAQGYQTLSAQLAAYHNQFVRALNAGAGSYASAEAANV 95 Query 90 QQSLLNAMDAPS 101 QQ+LLNA++AP+ Sbjct 96 QQTLLNAINAPT 107 >gi|307080232|ref|ZP_07489402.1| putative PE family protein [Mycobacterium tuberculosis SUMu011] gi|308361964|gb|EFP50815.1| putative PE family protein [Mycobacterium tuberculosis SUMu011] Length=174 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/72 (55%), Positives = 54/72 (75%), Gaps = 2/72 (2%) Query 32 TVGVQPA-ADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANA 89 T+G+ A AD+V+ AI+A+ SHAQ YQ +S Q+AA+H+Q V A + SYASAE AN Sbjct 36 TMGILAAGADEVSVAISALFGSHAQGYQTLSAQLAAYHNQFVRALNAGAGSYASAEAANV 95 Query 90 QQSLLNAMDAPS 101 QQ+LLNA++AP+ Sbjct 96 QQTLLNAINAPT 107 >gi|306968298|ref|ZP_07480959.1| putative PE family protein [Mycobacterium tuberculosis SUMu009] gi|308354085|gb|EFP42936.1| putative PE family protein [Mycobacterium tuberculosis SUMu009] Length=169 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/72 (55%), Positives = 54/72 (75%), Gaps = 2/72 (2%) Query 32 TVGVQPA-ADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANA 89 T+G+ A AD+V+ AI+A+ SHAQ YQ +S Q+AA+H+Q V A + SYASAE AN Sbjct 36 TMGILAAGADEVSVAISALFGSHAQGYQTLSAQLAAYHNQFVRALNAGAGSYASAEAANV 95 Query 90 QQSLLNAMDAPS 101 QQ+LLNA++AP+ Sbjct 96 QQTLLNAINAPT 107 >gi|323719259|gb|EGB28403.1| PE-PGRS family protein [Mycobacterium tuberculosis CDC1551A] Length=185 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/72 (55%), Positives = 54/72 (75%), Gaps = 2/72 (2%) Query 32 TVGVQPA-ADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANA 89 T+G+ A AD+V+ AI+A+ SHAQ YQ +S Q+AA+H+Q V A + SYASAE AN Sbjct 36 TMGILAAGADEVSVAISALFGSHAQGYQTLSAQLAAYHNQFVRALNAGAGSYASAEAANV 95 Query 90 QQSLLNAMDAPS 101 QQ+LLNA++AP+ Sbjct 96 QQTLLNAINAPT 107 >gi|313659076|ref|ZP_07815956.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN V2475] Length=201 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/72 (55%), Positives = 54/72 (75%), Gaps = 2/72 (2%) Query 32 TVGVQPA-ADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANA 89 T+G+ A AD+V+ AI+A+ SHAQ YQ +S Q+AA+H+Q V A + SYASAE AN Sbjct 36 TMGILAAGADEVSVAISALFGSHAQGYQTLSAQLAAYHNQFVRALNAGAGSYASAEAANV 95 Query 90 QQSLLNAMDAPS 101 QQ+LLNA++AP+ Sbjct 96 QQTLLNAINAPT 107 >gi|289443669|ref|ZP_06433413.1| PE-PGRS family protein [Mycobacterium tuberculosis T46] gi|289416588|gb|EFD13828.1| PE-PGRS family protein [Mycobacterium tuberculosis T46] Length=197 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/72 (55%), Positives = 54/72 (75%), Gaps = 2/72 (2%) Query 32 TVGVQPA-ADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANA 89 T+G+ A AD+V+ AI+A+ SHAQ YQ +S Q+AA+H+Q V A + SYASAE AN Sbjct 36 TMGILAAGADEVSVAISALFGSHAQGYQTLSAQLAAYHNQFVRALNAGAGSYASAEAANV 95 Query 90 QQSLLNAMDAPS 101 QQ+LLNA++AP+ Sbjct 96 QQTLLNAINAPT 107 >gi|183983708|ref|YP_001851999.1| PE-PGRS family protein, PE_PGRS2 [Mycobacterium marinum M] gi|183177034|gb|ACC42144.1| PE-PGRS family protein, PE_PGRS2 [Mycobacterium marinum M] Length=534 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/100 (46%), Positives = 60/100 (60%), Gaps = 12/100 (12%) Query 14 PEAMRAKAADL-----------DLAAAAKTVGVQPAADQVAAAIAAILLSHAQIYQDIST 62 PE MR A+DL +AAA T AAD+V+ AIAA+ HAQ YQ +S Sbjct 8 PELMRVAASDLANIGSTLSAANAVAAAQTTAVQAAAADEVSTAIAALFGWHAQTYQSLSA 67 Query 63 QMAAFHDQLVENRTADSTSYASAEA-NAQQSLLNAMDAPS 101 Q +FHDQ V+ + TSY SAEA N +Q+LLNA++AP+ Sbjct 68 QATSFHDQFVQTLASSGTSYWSAEATNVEQTLLNAINAPT 107 >gi|306793630|ref|ZP_07431932.1| putative PE family protein [Mycobacterium tuberculosis SUMu005] gi|308337975|gb|EFP26826.1| putative PE family protein [Mycobacterium tuberculosis SUMu005] Length=148 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 39/72 (55%), Positives = 54/72 (75%), Gaps = 2/72 (2%) Query 32 TVGVQPA-ADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANA 89 T+G+ A AD+V+ AI+A+ SHAQ YQ +S Q+AA+H+Q V A + SYASAE AN Sbjct 36 TMGILAAGADEVSVAISALFGSHAQGYQTLSAQLAAYHNQFVRALNAGAGSYASAEAANV 95 Query 90 QQSLLNAMDAPS 101 QQ+LLNA++AP+ Sbjct 96 QQTLLNAINAPT 107 >gi|167966823|ref|ZP_02549100.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra] Length=108 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 39/72 (55%), Positives = 54/72 (75%), Gaps = 2/72 (2%) Query 32 TVGVQPA-ADQVAAAIAAILLSHAQIYQDISTQMAAFHDQLVENRTADSTSYASAE-ANA 89 T+G+ A AD+V+ AI+A+ SHAQ YQ +S Q+AA+H+Q V A + SYASAE AN Sbjct 36 TMGILAAGADEVSVAISALFGSHAQGYQTLSAQLAAYHNQFVRALNAGAGSYASAEAANV 95 Query 90 QQSLLNAMDAPS 101 QQ+LLNA++AP+ Sbjct 96 QQTLLNAINAPT 107 Lambda K H 0.316 0.129 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 329042631632 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40