BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2412
Length=86
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609549|ref|NP_216928.1| 30S ribosomal protein S20 [Mycobact... 159 1e-37
gi|340627423|ref|YP_004745875.1| putative 30S ribosomal protein ... 158 3e-37
gi|41408322|ref|NP_961158.1| 30S ribosomal protein S20 [Mycobact... 154 4e-36
gi|342857812|ref|ZP_08714468.1| 30S ribosomal protein S20 [Mycob... 153 7e-36
gi|240170818|ref|ZP_04749477.1| 30S ribosomal protein S20 [Mycob... 152 2e-35
gi|296170532|ref|ZP_06852116.1| trigger factor [Mycobacterium pa... 150 5e-35
gi|118618944|ref|YP_907276.1| 30S ribosomal protein S20 [Mycobac... 150 7e-35
gi|254819867|ref|ZP_05224868.1| 30S ribosomal protein S20 [Mycob... 149 9e-35
gi|15827246|ref|NP_301509.1| 30S ribosomal protein S20 [Mycobact... 144 5e-33
gi|333990143|ref|YP_004522757.1| 30S ribosomal protein S20 RpsT ... 139 2e-31
gi|108800476|ref|YP_640673.1| 30S ribosomal protein S20 [Mycobac... 133 9e-30
gi|169628724|ref|YP_001702373.1| 30s ribosomal protein S20 [Myco... 129 2e-28
gi|145223252|ref|YP_001133930.1| 30S ribosomal protein S20 [Myco... 129 2e-28
gi|118467555|ref|YP_888840.1| 30S ribosomal protein S20 [Mycobac... 128 2e-28
gi|120404866|ref|YP_954695.1| 30S ribosomal protein S20 [Mycobac... 127 4e-28
gi|296140494|ref|YP_003647737.1| 30S ribosomal protein S20 [Tsuk... 121 3e-26
gi|326381590|ref|ZP_08203284.1| 30S ribosomal protein S20 [Gordo... 120 6e-26
gi|54023363|ref|YP_117605.1| 30S ribosomal protein S20 [Nocardia... 120 1e-25
gi|319949558|ref|ZP_08023605.1| 30S ribosomal protein S20 [Dietz... 119 1e-25
gi|262203075|ref|YP_003274283.1| 30S ribosomal protein S20 [Gord... 119 2e-25
gi|343926801|ref|ZP_08766294.1| 30S ribosomal protein S20 [Gordo... 114 3e-24
gi|333918817|ref|YP_004492398.1| 30S ribosomal protein S20 [Amyc... 114 4e-24
gi|111018295|ref|YP_701267.1| 30S ribosomal protein S20 [Rhodoco... 114 6e-24
gi|226360419|ref|YP_002778197.1| 30S ribosomal protein S20 [Rhod... 113 7e-24
gi|226307254|ref|YP_002767214.1| 30S ribosomal protein S20 [Rhod... 113 9e-24
gi|256375345|ref|YP_003099005.1| 30S ribosomal protein S20 [Acti... 113 9e-24
gi|289751017|ref|ZP_06510395.1| LOW QUALITY PROTEIN: 30S ribosom... 112 2e-23
gi|21221022|ref|NP_626801.1| 30S ribosomal protein S20 [Streptom... 110 6e-23
gi|302519010|ref|ZP_07271352.1| ribosomal protein S20 [Streptomy... 110 8e-23
gi|256396178|ref|YP_003117742.1| 30S ribosomal protein S20 [Cate... 110 1e-22
gi|256832780|ref|YP_003161507.1| 30S ribosomal protein S20 [Jone... 109 1e-22
gi|291451267|ref|ZP_06590657.1| 30S ribosomal protein S20 [Strep... 108 2e-22
gi|29832103|ref|NP_826737.1| 30S ribosomal protein S20 [Streptom... 108 3e-22
gi|291439722|ref|ZP_06579112.1| 30S ribosomal protein S20 [Strep... 108 3e-22
gi|295838950|ref|ZP_06825883.1| ribosomal protein S20 [Streptomy... 107 4e-22
gi|330469612|ref|YP_004407355.1| 30S ribosomal protein S20 [Verr... 107 5e-22
gi|302869313|ref|YP_003837950.1| 30S ribosomal protein S20 [Micr... 107 5e-22
gi|258651780|ref|YP_003200936.1| 30S ribosomal protein S20 [Naka... 107 6e-22
gi|271963809|ref|YP_003338005.1| 30S ribosomal protein S20 [Stre... 107 6e-22
gi|290960525|ref|YP_003491707.1| 30s ribosomal protein S20 [Stre... 107 6e-22
gi|111221438|ref|YP_712232.1| 30S ribosomal protein S20 [Frankia... 107 8e-22
gi|334337471|ref|YP_004542623.1| 30S ribosomal protein S20 [Isop... 105 2e-21
gi|72161231|ref|YP_288888.1| 30S ribosomal protein S20P [Thermob... 105 2e-21
gi|238060578|ref|ZP_04605287.1| 30S ribosomal protein S20 [Micro... 105 3e-21
gi|294629293|ref|ZP_06707853.1| 30S ribosomal protein S20 [Strep... 105 3e-21
gi|302551348|ref|ZP_07303690.1| ribosomal protein S20 [Streptomy... 105 3e-21
gi|317507853|ref|ZP_07965554.1| ribosomal protein S20 [Segnilipa... 104 4e-21
gi|300788522|ref|YP_003768813.1| 30S ribosomal protein S20 [Amyc... 104 4e-21
gi|312140319|ref|YP_004007655.1| 30S ribosomal protein s20 rpst ... 103 7e-21
gi|302528888|ref|ZP_07281230.1| ribosomal protein S20 [Streptomy... 103 7e-21
>gi|15609549|ref|NP_216928.1| 30S ribosomal protein S20 [Mycobacterium tuberculosis H37Rv]
gi|15841930|ref|NP_336967.1| 30S ribosomal protein S20 [Mycobacterium tuberculosis CDC1551]
gi|31793591|ref|NP_856084.1| 30S ribosomal protein S20 [Mycobacterium bovis AF2122/97]
77 more sequence titles
Length=86
Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/86 (99%), Positives = 86/86 (100%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK
Sbjct 1 MANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
AASKGVIHKNQAANKKSALAQALNKL
Sbjct 61 AASKGVIHKNQAANKKSALAQALNKL 86
>gi|340627423|ref|YP_004745875.1| putative 30S ribosomal protein S20 RPST [Mycobacterium canettii
CIPT 140010059]
gi|340005613|emb|CCC44777.1| putative 30S ribosomal protein S20 RPST [Mycobacterium canettii
CIPT 140010059]
Length=86
Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/86 (98%), Positives = 85/86 (99%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDK KAAELLASTNRKLDK
Sbjct 1 MANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKEKAAELLASTNRKLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
AASKGVIHKNQAANKKSALAQALNKL
Sbjct 61 AASKGVIHKNQAANKKSALAQALNKL 86
>gi|41408322|ref|NP_961158.1| 30S ribosomal protein S20 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118464716|ref|YP_880995.1| 30S ribosomal protein S20 [Mycobacterium avium 104]
gi|254774588|ref|ZP_05216104.1| 30S ribosomal protein S20 [Mycobacterium avium subsp. avium ATCC
25291]
6 more sequence titles
Length=86
Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 81/86 (95%), Positives = 84/86 (98%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQQKRN+TNERARLRNK+VKSSLRTAVRAFREAAHAGDK KAAELL STNRKLDK
Sbjct 1 MANIKSQQKRNKTNERARLRNKSVKSSLRTAVRAFREAAHAGDKEKAAELLVSTNRKLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
AASKGVIHKNQAANKKSALAQALNKL
Sbjct 61 AASKGVIHKNQAANKKSALAQALNKL 86
>gi|342857812|ref|ZP_08714468.1| 30S ribosomal protein S20 [Mycobacterium colombiense CECT 3035]
gi|342135145|gb|EGT88311.1| 30S ribosomal protein S20 [Mycobacterium colombiense CECT 3035]
Length=86
Score = 153 bits (387), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 80/86 (94%), Positives = 84/86 (98%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQQKRN+TNERARLRNK+VKSSLRTAVRAFREAAHAGDK KAAELL STNRKLDK
Sbjct 1 MANIKSQQKRNKTNERARLRNKSVKSSLRTAVRAFREAAHAGDKEKAAELLVSTNRKLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
AASKGVIHKNQAANKKSALAQALNK+
Sbjct 61 AASKGVIHKNQAANKKSALAQALNKI 86
>gi|240170818|ref|ZP_04749477.1| 30S ribosomal protein S20 [Mycobacterium kansasii ATCC 12478]
Length=87
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/86 (94%), Positives = 83/86 (97%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQQKRNRTNERARLRNK+VKSSLRTAVRAFREAAHAGDK KAAELL STNRKLDK
Sbjct 1 MANIKSQQKRNRTNERARLRNKSVKSSLRTAVRAFREAAHAGDKEKAAELLVSTNRKLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
AASKGVIHKNQAANKKSALA+ LNKL
Sbjct 61 AASKGVIHKNQAANKKSALARTLNKL 86
>gi|296170532|ref|ZP_06852116.1| trigger factor [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295894764|gb|EFG74489.1| trigger factor [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=86
Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 79/86 (92%), Positives = 83/86 (97%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQQKRNRTNERARLRNK+VKSSLRTAVRAFREA HAGDK KA ELLA+TNRKLDK
Sbjct 1 MANIKSQQKRNRTNERARLRNKSVKSSLRTAVRAFREATHAGDKEKATELLAATNRKLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
AASKGVIHKNQAANKKSALA+ALNKL
Sbjct 61 AASKGVIHKNQAANKKSALARALNKL 86
>gi|118618944|ref|YP_907276.1| 30S ribosomal protein S20 [Mycobacterium ulcerans Agy99]
gi|183983713|ref|YP_001852004.1| 30S ribosomal protein S20 RpsT [Mycobacterium marinum M]
gi|166223954|sp|A0PTY6.1|RS20_MYCUA RecName: Full=30S ribosomal protein S20
gi|226736526|sp|B2HMC9.1|RS20_MYCMM RecName: Full=30S ribosomal protein S20
gi|118571054|gb|ABL05805.1| 30S ribosomal protein S20 RpsT [Mycobacterium ulcerans Agy99]
gi|183177039|gb|ACC42149.1| 30S ribosomal protein S20 RpsT [Mycobacterium marinum M]
Length=87
Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 78/86 (91%), Positives = 84/86 (98%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQQKRNRTNERARLRNK+VKSSLRTAVR+FR+AAH+GDK KAAELL STNRKLDK
Sbjct 1 MANIKSQQKRNRTNERARLRNKSVKSSLRTAVRSFRDAAHSGDKEKAAELLVSTNRKLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
AASKGVIHKNQAANKKSALA+ALNKL
Sbjct 61 AASKGVIHKNQAANKKSALARALNKL 86
>gi|254819867|ref|ZP_05224868.1| 30S ribosomal protein S20 [Mycobacterium intracellulare ATCC
13950]
Length=86
Score = 149 bits (377), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 79/86 (92%), Positives = 82/86 (96%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQQKRN+TNERARLRNK+VKSSLRTAVRAFREA AGDK KAAELL STNRKLDK
Sbjct 1 MANIKSQQKRNKTNERARLRNKSVKSSLRTAVRAFREATSAGDKEKAAELLVSTNRKLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
AASKGVIHKNQAANKKSALAQALNKL
Sbjct 61 AASKGVIHKNQAANKKSALAQALNKL 86
>gi|15827246|ref|NP_301509.1| 30S ribosomal protein S20 [Mycobacterium leprae TN]
gi|221229724|ref|YP_002503140.1| 30S ribosomal protein S20 [Mycobacterium leprae Br4923]
gi|3122815|sp|O33132.1|RS20_MYCLE RecName: Full=30S ribosomal protein S20
gi|254813092|sp|B8ZUR8.1|RS20_MYCLB RecName: Full=30S ribosomal protein S20
gi|2398689|emb|CAB16149.1| 30s ribosomal protein s20 [Mycobacterium leprae]
gi|13092795|emb|CAC30112.1| 30S ribosomal protein S20 [Mycobacterium leprae]
gi|219932831|emb|CAR70697.1| 30S ribosomal protein S20 [Mycobacterium leprae Br4923]
Length=86
Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 75/86 (88%), Positives = 81/86 (95%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ NIKSQQKRNRTNERARLRNK+VKSSLRTAVRAFREA HAG+K KAA+LL ST+RKLDK
Sbjct 1 MTNIKSQQKRNRTNERARLRNKSVKSSLRTAVRAFREAVHAGEKEKAAKLLVSTSRKLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
AASKGVIHKNQAANKKSALA+ LNKL
Sbjct 61 AASKGVIHKNQAANKKSALARTLNKL 86
>gi|333990143|ref|YP_004522757.1| 30S ribosomal protein S20 RpsT [Mycobacterium sp. JDM601]
gi|333486111|gb|AEF35503.1| 30S ribosomal protein S20 RpsT [Mycobacterium sp. JDM601]
Length=86
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/86 (85%), Positives = 80/86 (94%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KRNRTNERARLRN++VKS++RTA+RAFREAA AGDK KA ELL ST RKLDK
Sbjct 1 MANIKSQVKRNRTNERARLRNQSVKSAVRTAIRAFREAAEAGDKEKAGELLLSTGRKLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
AASKGVIHKNQAANKKSALA+ALNKL
Sbjct 61 AASKGVIHKNQAANKKSALARALNKL 86
>gi|108800476|ref|YP_640673.1| 30S ribosomal protein S20 [Mycobacterium sp. MCS]
gi|119869614|ref|YP_939566.1| 30S ribosomal protein S20 [Mycobacterium sp. KMS]
gi|126436099|ref|YP_001071790.1| 30S ribosomal protein S20 [Mycobacterium sp. JLS]
6 more sequence titles
Length=86
Score = 133 bits (334), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 71/86 (83%), Positives = 78/86 (91%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ+KR RTNER RLRN++VKSSLRTAVR FREA AGDK KAAELL +T+RKLDK
Sbjct 1 MANIKSQEKRIRTNERRRLRNQSVKSSLRTAVRGFREALDAGDKDKAAELLVATSRKLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
AASKGVIHKNQAANKKSAL+ ALNKL
Sbjct 61 AASKGVIHKNQAANKKSALSVALNKL 86
>gi|169628724|ref|YP_001702373.1| 30s ribosomal protein S20 [Mycobacterium abscessus ATCC 19977]
gi|226736524|sp|B1MN07.1|RS20_MYCA9 RecName: Full=30S ribosomal protein S20
gi|169240691|emb|CAM61719.1| 30s ribosomal protein S20 [Mycobacterium abscessus]
Length=86
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/86 (80%), Positives = 74/86 (87%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ+KR RTNERARLRN+A KSSLRTA+R REA GDK KA ELL ST+RKLDK
Sbjct 1 MANIKSQEKRIRTNERARLRNQATKSSLRTAIRGLREAIAEGDKEKAGELLVSTSRKLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
A +KGVIHKNQAANKKSALA ALNKL
Sbjct 61 AVTKGVIHKNQAANKKSALALALNKL 86
>gi|145223252|ref|YP_001133930.1| 30S ribosomal protein S20 [Mycobacterium gilvum PYR-GCK]
gi|315443712|ref|YP_004076591.1| 30S ribosomal protein S20P [Mycobacterium sp. Spyr1]
gi|189044871|sp|A4T2G0.1|RS20_MYCGI RecName: Full=30S ribosomal protein S20
gi|145215738|gb|ABP45142.1| SSU ribosomal protein S20P [Mycobacterium gilvum PYR-GCK]
gi|315262015|gb|ADT98756.1| SSU ribosomal protein S20P [Mycobacterium sp. Spyr1]
Length=86
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/86 (80%), Positives = 76/86 (89%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQQKR TNER RLRNK+VKSSL TAVR FREA +GDK KA ELL +T+RKLDK
Sbjct 1 MANIKSQQKRILTNERRRLRNKSVKSSLHTAVRGFREAVESGDKEKAGELLLATSRKLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
AASKGVIHKNQAAN+KSALA+ALNK+
Sbjct 61 AASKGVIHKNQAANRKSALARALNKI 86
>gi|118467555|ref|YP_888840.1| 30S ribosomal protein S20 [Mycobacterium smegmatis str. MC2 155]
gi|166223950|sp|A0R102.1|RS20_MYCS2 RecName: Full=30S ribosomal protein S20
gi|118168842|gb|ABK69738.1| ribosomal protein S20 [Mycobacterium smegmatis str. MC2 155]
Length=86
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/86 (81%), Positives = 76/86 (89%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KR RTNER RLRN++VKSSLRTA+R FREA AGDK KA+ELL +T+RKLDK
Sbjct 1 MANIKSQIKRIRTNERRRLRNQSVKSSLRTAIRGFREAVDAGDKDKASELLHATSRKLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
AASKGVIH NQAANKKSALA ALNKL
Sbjct 61 AASKGVIHPNQAANKKSALALALNKL 86
>gi|120404866|ref|YP_954695.1| 30S ribosomal protein S20 [Mycobacterium vanbaalenii PYR-1]
gi|166223955|sp|A1TBY9.1|RS20_MYCVP RecName: Full=30S ribosomal protein S20
gi|119957684|gb|ABM14689.1| SSU ribosomal protein S20P [Mycobacterium vanbaalenii PYR-1]
Length=86
Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/86 (81%), Positives = 75/86 (88%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQQKR TNER RLRNK+VKSSL TAVR FR A AGDK KA ELLAST+RKLDK
Sbjct 1 MANIKSQQKRILTNERRRLRNKSVKSSLHTAVRGFRAAVEAGDKDKAGELLASTSRKLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
AASKGVIHKNQAAN+KSALA+AL K+
Sbjct 61 AASKGVIHKNQAANRKSALAKALQKI 86
>gi|296140494|ref|YP_003647737.1| 30S ribosomal protein S20 [Tsukamurella paurometabola DSM 20162]
gi|296028628|gb|ADG79398.1| ribosomal protein S20 [Tsukamurella paurometabola DSM 20162]
Length=86
Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/86 (76%), Positives = 74/86 (87%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KR +TNER RLRN++ KSSLRTA+R FREA AGDK KA LLAST+++LDK
Sbjct 1 MANIKSQMKRIKTNERNRLRNQSAKSSLRTAIRHFREAVDAGDKDKATTLLASTSQQLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
AASKG+IH NQAANKKSALA ALNKL
Sbjct 61 AASKGIIHANQAANKKSALALALNKL 86
>gi|326381590|ref|ZP_08203284.1| 30S ribosomal protein S20 [Gordonia neofelifaecis NRRL B-59395]
gi|326199837|gb|EGD57017.1| 30S ribosomal protein S20 [Gordonia neofelifaecis NRRL B-59395]
Length=86
Score = 120 bits (302), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 62/86 (73%), Positives = 77/86 (90%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KRN+TNE+AR RN+++KS+LRTA+R FRE +GDK KAAELL +T+R+LDK
Sbjct 1 MANIKSQIKRNKTNEKARQRNQSIKSALRTALRNFRETVASGDKDKAAELLVATSRQLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
AASKGVIHKNQAANKKSA+A A+N+L
Sbjct 61 AASKGVIHKNQAANKKSAMALAVNQL 86
>gi|54023363|ref|YP_117605.1| 30S ribosomal protein S20 [Nocardia farcinica IFM 10152]
gi|59798617|sp|Q5Z000.1|RS20_NOCFA RecName: Full=30S ribosomal protein S20
gi|54014871|dbj|BAD56241.1| putative ribosomal protein S20 [Nocardia farcinica IFM 10152]
Length=86
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/86 (77%), Positives = 73/86 (85%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KR RTNE AR RN++VKS+LRTA+R+FREAA AGDK KAAE L +RKLDK
Sbjct 1 MANIKSQMKRIRTNEAARKRNQSVKSALRTAIRSFREAAEAGDKDKAAERLQFASRKLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
AASKGVIH NQAANKKSALA A NKL
Sbjct 61 AASKGVIHPNQAANKKSALALAFNKL 86
>gi|319949558|ref|ZP_08023605.1| 30S ribosomal protein S20 [Dietzia cinnamea P4]
gi|319436776|gb|EFV91849.1| 30S ribosomal protein S20 [Dietzia cinnamea P4]
Length=86
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/86 (71%), Positives = 74/86 (87%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KRNRTNER RLRN++ KS+LRTA+R+ REA +GDK KA LL +T+R+LDK
Sbjct 1 MANIKSQIKRNRTNERNRLRNQSTKSALRTAIRSLREATESGDKEKAGALLVATSRQLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
AASKGVIH+NQAANKKSAL +A+N L
Sbjct 61 AASKGVIHQNQAANKKSALTKAVNSL 86
>gi|262203075|ref|YP_003274283.1| 30S ribosomal protein S20 [Gordonia bronchialis DSM 43247]
gi|262086422|gb|ACY22390.1| ribosomal protein S20 [Gordonia bronchialis DSM 43247]
Length=86
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/86 (75%), Positives = 73/86 (85%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KRNRTNE R RN++VKSSLRTA+R FREA +GDK KAAEL + +RKLDK
Sbjct 1 MANIKSQIKRNRTNEERRKRNQSVKSSLRTAIRGFREAVESGDKDKAAELGQAASRKLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
AASKGVIH NQAANKKSA+A A+NKL
Sbjct 61 AASKGVIHANQAANKKSAIALAVNKL 86
>gi|343926801|ref|ZP_08766294.1| 30S ribosomal protein S20 [Gordonia alkanivorans NBRC 16433]
gi|343763161|dbj|GAA13220.1| 30S ribosomal protein S20 [Gordonia alkanivorans NBRC 16433]
Length=86
Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/86 (71%), Positives = 73/86 (85%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KRNRTNE+ R RN +VKS+LRT++R+FREA +GDK KA EL + +RKLDK
Sbjct 1 MANIKSQIKRNRTNEKNRQRNVSVKSALRTSIRSFREAVESGDKDKATELGQAASRKLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
AASKGVIH NQAANKKSA+A A+NKL
Sbjct 61 AASKGVIHANQAANKKSAIALAVNKL 86
>gi|333918817|ref|YP_004492398.1| 30S ribosomal protein S20 [Amycolicicoccus subflavus DQS3-9A1]
gi|333481038|gb|AEF39598.1| 30S ribosomal protein S20 [Amycolicicoccus subflavus DQS3-9A1]
Length=87
Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/86 (73%), Positives = 72/86 (84%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KR RTNER RLRN++VKS+LRTA+R FREAA GDK +A ELL + +R LDK
Sbjct 1 MANIKSQVKRIRTNERNRLRNQSVKSALRTAIRKFREAAATGDKTEAKELLQAASRHLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
AA+ VIHKNQAANKKSA+AQA NKL
Sbjct 61 AATARVIHKNQAANKKSAMAQAYNKL 86
>gi|111018295|ref|YP_701267.1| 30S ribosomal protein S20 [Rhodococcus jostii RHA1]
gi|118573838|sp|Q0SH77.1|RS20_RHOSR RecName: Full=30S ribosomal protein S20
gi|110817825|gb|ABG93109.1| 30S ribosomal protein S20 [Rhodococcus jostii RHA1]
Length=86
Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/86 (81%), Positives = 78/86 (91%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KR RTNE ARLRN++VKSSLRTA+R+FREAA AGDK KA ELL +T+RKLDK
Sbjct 1 MANIKSQVKRIRTNEAARLRNQSVKSSLRTAIRSFREAAAAGDKDKANELLVATSRKLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
AASKGVIH NQAANKKSALAQA+NK+
Sbjct 61 AASKGVIHANQAANKKSALAQAINKI 86
>gi|226360419|ref|YP_002778197.1| 30S ribosomal protein S20 [Rhodococcus opacus B4]
gi|254813087|sp|C1AUP4.1|RS20_RHOOB RecName: Full=30S ribosomal protein S20
gi|226238904|dbj|BAH49252.1| 30S ribosomal protein S20 [Rhodococcus opacus B4]
Length=86
Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 69/86 (81%), Positives = 78/86 (91%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KR RTNE ARLRN++VKSSLRTA+R+FREAA AGDK KA ELL +T+RKLDK
Sbjct 1 MANIKSQVKRIRTNEAARLRNQSVKSSLRTAIRSFREAAAAGDKDKANELLVATSRKLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
AASKGVIH NQAANKKSALAQA+NK+
Sbjct 61 AASKGVIHANQAANKKSALAQAVNKI 86
>gi|226307254|ref|YP_002767214.1| 30S ribosomal protein S20 [Rhodococcus erythropolis PR4]
gi|229493232|ref|ZP_04387024.1| ribosomal protein S20 [Rhodococcus erythropolis SK121]
gi|259494872|sp|C1A1J0.1|RS20_RHOE4 RecName: Full=30S ribosomal protein S20
gi|226186371|dbj|BAH34475.1| 30S ribosomal protein S20 [Rhodococcus erythropolis PR4]
gi|229319963|gb|EEN85792.1| ribosomal protein S20 [Rhodococcus erythropolis SK121]
Length=86
Score = 113 bits (283), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 70/86 (82%), Positives = 77/86 (90%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KR RTNE ARLRN++VKSSLRTA+R+FREAA AGDK KA ELL ST+RKLDK
Sbjct 1 MANIKSQVKRIRTNEAARLRNQSVKSSLRTAIRSFREAAAAGDKDKANELLVSTSRKLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
AASKGVIH NQAANKKSAL+QA NKL
Sbjct 61 AASKGVIHANQAANKKSALSQAANKL 86
>gi|256375345|ref|YP_003099005.1| 30S ribosomal protein S20 [Actinosynnema mirum DSM 43827]
gi|255919648|gb|ACU35159.1| ribosomal protein S20 [Actinosynnema mirum DSM 43827]
Length=86
Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 61/86 (71%), Positives = 72/86 (84%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KR +TNE+ARLRNKAVKSSL+TA+R FREAA AGDK KA L+ +RKLDK
Sbjct 1 MANIKSQLKRIKTNEKARLRNKAVKSSLKTAIRKFREAAEAGDKDKALALVQDASRKLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
A SKGVIH NQAANKKSA+A+ N++
Sbjct 61 AVSKGVIHANQAANKKSAMAKRANQI 86
>gi|289751017|ref|ZP_06510395.1| LOW QUALITY PROTEIN: 30S ribosomal protein S20 rpsT [Mycobacterium
tuberculosis T92]
gi|289691604|gb|EFD59033.1| LOW QUALITY PROTEIN: 30S ribosomal protein S20 rpsT [Mycobacterium
tuberculosis T92]
Length=62
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/61 (97%), Positives = 61/61 (100%), Gaps = 0/61 (0%)
Query 26 SSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDKAASKGVIHKNQAANKKSALAQALNK 85
SS+R+AVRAFREAAHAGDKAKAAELLASTNRKLDKAASKGVIHKNQAANKKSALAQALNK
Sbjct 2 SSIRSAVRAFREAAHAGDKAKAAELLASTNRKLDKAASKGVIHKNQAANKKSALAQALNK 61
Query 86 L 86
L
Sbjct 62 L 62
>gi|21221022|ref|NP_626801.1| 30S ribosomal protein S20 [Streptomyces coelicolor A3(2)]
gi|289771701|ref|ZP_06531079.1| 30S ribosomal protein S20 [Streptomyces lividans TK24]
gi|17865608|sp|Q9RDM3.1|RS20_STRCO RecName: Full=30S ribosomal protein S20
gi|6714669|emb|CAB66241.1| 30s ribosomal protein S20 [Streptomyces coelicolor A3(2)]
gi|289701900|gb|EFD69329.1| 30S ribosomal protein S20 [Streptomyces lividans TK24]
Length=88
Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/86 (71%), Positives = 70/86 (82%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KRN+TNE+ARLRNK+VKSSL+TA+R REAA AGD KA E +R+LDK
Sbjct 1 MANIKSQIKRNKTNEKARLRNKSVKSSLKTAIRKAREAAAAGDVEKATEFQRVASRELDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
A SKGVIHKNQAANKKSALAQ + L
Sbjct 61 AVSKGVIHKNQAANKKSALAQKVGAL 86
>gi|302519010|ref|ZP_07271352.1| ribosomal protein S20 [Streptomyces sp. SPB78]
gi|318061213|ref|ZP_07979934.1| 30S ribosomal protein S20 [Streptomyces sp. SA3_actG]
gi|318076117|ref|ZP_07983449.1| 30S ribosomal protein S20 [Streptomyces sp. SA3_actF]
gi|333027159|ref|ZP_08455223.1| putative 30S ribosomal protein S20 [Streptomyces sp. Tu6071]
gi|302427905|gb|EFK99720.1| ribosomal protein S20 [Streptomyces sp. SPB78]
gi|332747011|gb|EGJ77452.1| putative 30S ribosomal protein S20 [Streptomyces sp. Tu6071]
Length=88
Score = 110 bits (275), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 62/80 (78%), Positives = 66/80 (83%), Gaps = 0/80 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KRN+TNE+ARLRNKAVKSSL+TAVR REAA AGD KA EL RKLDK
Sbjct 1 MANIKSQIKRNKTNEKARLRNKAVKSSLKTAVRKAREAAAAGDVEKAQELTRVATRKLDK 60
Query 61 AASKGVIHKNQAANKKSALA 80
A S GVIHKNQAANKKSALA
Sbjct 61 AVSSGVIHKNQAANKKSALA 80
>gi|256396178|ref|YP_003117742.1| 30S ribosomal protein S20 [Catenulispora acidiphila DSM 44928]
gi|256362404|gb|ACU75901.1| ribosomal protein S20 [Catenulispora acidiphila DSM 44928]
Length=88
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/86 (70%), Positives = 72/86 (84%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KR +TNE+AR RNKAVKSSL+TA+R REA +GD AKA EL + +R+LDK
Sbjct 1 MANIKSQIKRIKTNEKARQRNKAVKSSLKTAIRKTREAVESGDTAKAQELAQAASRELDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
AASKGVIH NQAANKKSALA+++N L
Sbjct 61 AASKGVIHANQAANKKSALAKSVNGL 86
>gi|256832780|ref|YP_003161507.1| 30S ribosomal protein S20 [Jonesia denitrificans DSM 20603]
gi|256686311|gb|ACV09204.1| ribosomal protein S20 [Jonesia denitrificans DSM 20603]
Length=86
Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/86 (73%), Positives = 71/86 (83%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KRNRTNE+ARLRNKAVKS ++T VRA REA AGDK A LA +RKLDK
Sbjct 1 MANIKSQIKRNRTNEKARLRNKAVKSEVKTYVRAVREAVAAGDKEAAVAALAVASRKLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
AA+KGVIHKNQAAN+KS LA+A+N L
Sbjct 61 AATKGVIHKNQAANRKSGLAKAVNAL 86
>gi|291451267|ref|ZP_06590657.1| 30S ribosomal protein S20 [Streptomyces albus J1074]
gi|291354216|gb|EFE81118.1| 30S ribosomal protein S20 [Streptomyces albus J1074]
Length=88
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/80 (74%), Positives = 67/80 (84%), Gaps = 0/80 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KRN+TNE+ARLRNKAVKSSL+TA+R REA AGD KA E + +R+LDK
Sbjct 1 MANIKSQIKRNKTNEKARLRNKAVKSSLKTAIRKAREAVAAGDAEKATEYTRAASRQLDK 60
Query 61 AASKGVIHKNQAANKKSALA 80
A SKGVIHKNQAANKKSALA
Sbjct 61 AVSKGVIHKNQAANKKSALA 80
>gi|29832103|ref|NP_826737.1| 30S ribosomal protein S20 [Streptomyces avermitilis MA-4680]
gi|59798881|sp|Q82BZ4.1|RS20_STRAW RecName: Full=30S ribosomal protein S20
gi|29609221|dbj|BAC73272.1| putative ribosomal protein S20 [Streptomyces avermitilis MA-4680]
Length=88
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/86 (71%), Positives = 69/86 (81%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KRN+TNE+ARLRNKAVKSSL+TA+R REAA AGD KA E + R+LDK
Sbjct 1 MANIKSQIKRNKTNEKARLRNKAVKSSLKTAIRKAREAAAAGDVEKATEYQRAAARQLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
A SKGVIHKNQAANKKSALA + L
Sbjct 61 AVSKGVIHKNQAANKKSALASKVAPL 86
>gi|291439722|ref|ZP_06579112.1| 30S ribosomal protein S20 [Streptomyces ghanaensis ATCC 14672]
gi|291342617|gb|EFE69573.1| 30S ribosomal protein S20 [Streptomyces ghanaensis ATCC 14672]
Length=88
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/81 (75%), Positives = 66/81 (82%), Gaps = 0/81 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KRN+TNE+ARLRNKAVKSSL+TA+R REA AGD KA E R+LDK
Sbjct 1 MANIKSQIKRNKTNEKARLRNKAVKSSLKTAIRKAREAVAAGDVEKATEYQRVAARQLDK 60
Query 61 AASKGVIHKNQAANKKSALAQ 81
A SKGVIHKNQAANKKSALAQ
Sbjct 61 AVSKGVIHKNQAANKKSALAQ 81
>gi|295838950|ref|ZP_06825883.1| ribosomal protein S20 [Streptomyces sp. SPB74]
gi|197695505|gb|EDY42438.1| ribosomal protein S20 [Streptomyces sp. SPB74]
Length=86
Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/80 (75%), Positives = 65/80 (82%), Gaps = 0/80 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KRN+TNE+ARLRNKAVKSSL+TA+R REA AGD KA EL RKLDK
Sbjct 1 MANIKSQIKRNKTNEKARLRNKAVKSSLKTAIRKAREATAAGDVEKAQELTRLATRKLDK 60
Query 61 AASKGVIHKNQAANKKSALA 80
A S GVIHKNQAANKKSALA
Sbjct 61 AVSSGVIHKNQAANKKSALA 80
>gi|330469612|ref|YP_004407355.1| 30S ribosomal protein S20 [Verrucosispora maris AB-18-032]
gi|328812583|gb|AEB46755.1| 30S ribosomal protein S20 [Verrucosispora maris AB-18-032]
Length=88
Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/81 (71%), Positives = 67/81 (83%), Gaps = 0/81 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KRNR NE+ RLRNK+VKSSL+TA+R F EAA AGD KA L+ +RKLDK
Sbjct 1 MANIKSQIKRNRQNEKRRLRNKSVKSSLKTAIRKFHEAAEAGDTEKATVLMQEASRKLDK 60
Query 61 AASKGVIHKNQAANKKSALAQ 81
AASKGVIH NQAAN+KSA+A+
Sbjct 61 AASKGVIHANQAANRKSAIAK 81
>gi|302869313|ref|YP_003837950.1| 30S ribosomal protein S20 [Micromonospora aurantiaca ATCC 27029]
gi|315504212|ref|YP_004083099.1| 30S ribosomal protein S20 [Micromonospora sp. L5]
gi|302572172|gb|ADL48374.1| ribosomal protein S20 [Micromonospora aurantiaca ATCC 27029]
gi|315410831|gb|ADU08948.1| ribosomal protein S20 [Micromonospora sp. L5]
Length=88
Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/81 (71%), Positives = 66/81 (82%), Gaps = 0/81 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KRNR NE+ RLRNK+VKSSL+TA+R F EAA AGD KA L+ RKLDK
Sbjct 1 MANIKSQIKRNRQNEKRRLRNKSVKSSLKTAIRKFHEAAEAGDTEKATVLMREATRKLDK 60
Query 61 AASKGVIHKNQAANKKSALAQ 81
AASKGVIH NQAAN+KSA+A+
Sbjct 61 AASKGVIHSNQAANRKSAIAK 81
>gi|258651780|ref|YP_003200936.1| 30S ribosomal protein S20 [Nakamurella multipartita DSM 44233]
gi|258555005|gb|ACV77947.1| ribosomal protein S20 [Nakamurella multipartita DSM 44233]
Length=86
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 60/86 (70%), Positives = 68/86 (80%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KRNRTNE ARLRNK+VKSSL+TAVR R AA AGDK A L + R LDK
Sbjct 1 MANIKSQIKRNRTNEAARLRNKSVKSSLKTAVRKVRTAAEAGDKTAAEVELKAACRSLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
AASKGVIH NQAAN+KSAL Q +N++
Sbjct 61 AASKGVIHANQAANRKSALTQLVNQV 86
>gi|271963809|ref|YP_003338005.1| 30S ribosomal protein S20 [Streptosporangium roseum DSM 43021]
gi|270506984|gb|ACZ85262.1| 30S ribosomal protein S20 [Streptosporangium roseum DSM 43021]
Length=90
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 60/86 (70%), Positives = 71/86 (83%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KRNR NE+ARLRNKAVKSSL+TAVR FREAA G+ +A L + R+LDK
Sbjct 1 MANIKSQIKRNRQNEKARLRNKAVKSSLKTAVRKFREAADQGNVDEAVVLQRAACRQLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
AASKGVIHKNQAAN+KSA+AQ + +L
Sbjct 61 AASKGVIHKNQAANRKSAIAQRVVEL 86
>gi|290960525|ref|YP_003491707.1| 30s ribosomal protein S20 [Streptomyces scabiei 87.22]
gi|260650051|emb|CBG73167.1| 30s ribosomal protein S20 [Streptomyces scabiei 87.22]
Length=86
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/78 (76%), Positives = 65/78 (84%), Gaps = 0/78 (0%)
Query 3 NIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDKAA 62
NIKSQ KRN+TNE+ARLRNKAVKSSL+TA+R REAA AGD KA E + R+LDKA
Sbjct 1 NIKSQIKRNKTNEKARLRNKAVKSSLKTAIRKAREAAAAGDTVKATEYQRAAARQLDKAV 60
Query 63 SKGVIHKNQAANKKSALA 80
SKGVIHKNQAANKKSALA
Sbjct 61 SKGVIHKNQAANKKSALA 78
>gi|111221438|ref|YP_712232.1| 30S ribosomal protein S20 [Frankia alni ACN14a]
gi|111148970|emb|CAJ60650.1| 30S ribosomal protein S20 [Frankia alni ACN14a]
Length=103
Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 59/82 (72%), Positives = 65/82 (80%), Gaps = 0/82 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
VANIKSQ KRN TNE+ RLRNKAVKS L+T VR FR+A AGD +A E L +RKLDK
Sbjct 15 VANIKSQIKRNLTNEKRRLRNKAVKSELKTHVRRFRDAVEAGDAERAGETLRVASRKLDK 74
Query 61 AASKGVIHKNQAANKKSALAQA 82
A SKGVIH NQAANKKSALA+A
Sbjct 75 AVSKGVIHPNQAANKKSALARA 96
>gi|334337471|ref|YP_004542623.1| 30S ribosomal protein S20 [Isoptericola variabilis 225]
gi|334107839|gb|AEG44729.1| 30S ribosomal protein S20 [Isoptericola variabilis 225]
Length=86
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/86 (69%), Positives = 68/86 (80%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KR +TNE+ARLRNKAVKS L+T VR REA AGDK AA L +RKLDK
Sbjct 1 MANIKSQLKRIKTNEKARLRNKAVKSELKTYVRKVREAVAAGDKEAAAVALREASRKLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
A SKGVIH NQAAN+KSA+A+A+ KL
Sbjct 61 AVSKGVIHANQAANRKSAIAKAVEKL 86
>gi|72161231|ref|YP_288888.1| 30S ribosomal protein S20P [Thermobifida fusca YX]
gi|118574567|sp|Q47RQ2.1|RS20_THEFY RecName: Full=30S ribosomal protein S20
gi|71914963|gb|AAZ54865.1| SSU ribosomal protein S20P [Thermobifida fusca YX]
Length=92
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/86 (68%), Positives = 72/86 (84%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ+KR R NE+ARLRNKAVKSSL+TA+R FREAA AG+ +A L + R+LDK
Sbjct 1 MANIKSQKKRIRQNEKARLRNKAVKSSLKTAIRKFREAAEAGNVEEAIILQRAAARQLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
A SKGVIHKNQAAN+KSA+A+ L++L
Sbjct 61 AVSKGVIHKNQAANRKSAIAKRLHQL 86
>gi|238060578|ref|ZP_04605287.1| 30S ribosomal protein S20 [Micromonospora sp. ATCC 39149]
gi|237882389|gb|EEP71217.1| 30S ribosomal protein S20 [Micromonospora sp. ATCC 39149]
Length=88
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/81 (70%), Positives = 65/81 (81%), Gaps = 0/81 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KRNR NE+ RLRNK+VKSSL+TAVR F EA AGD KA L+ +RKLDK
Sbjct 1 MANIKSQIKRNRQNEKRRLRNKSVKSSLKTAVRKFNEAVEAGDAEKATALMRDASRKLDK 60
Query 61 AASKGVIHKNQAANKKSALAQ 81
A SKGVIH NQAAN+KSA+A+
Sbjct 61 AVSKGVIHSNQAANRKSAIAK 81
>gi|294629293|ref|ZP_06707853.1| 30S ribosomal protein S20 [Streptomyces sp. e14]
gi|292832626|gb|EFF90975.1| 30S ribosomal protein S20 [Streptomyces sp. e14]
Length=88
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/80 (74%), Positives = 66/80 (83%), Gaps = 0/80 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KR +TNE+ARLRNKAVKSSL+TA+R REAA AGD KA E + R+LDK
Sbjct 1 MANIKSQIKRIKTNEKARLRNKAVKSSLKTAIRKAREAAAAGDVEKATEYQRAAARQLDK 60
Query 61 AASKGVIHKNQAANKKSALA 80
A SKGVIHKNQAANKKSALA
Sbjct 61 AVSKGVIHKNQAANKKSALA 80
>gi|302551348|ref|ZP_07303690.1| ribosomal protein S20 [Streptomyces viridochromogenes DSM 40736]
gi|302468966|gb|EFL32059.1| ribosomal protein S20 [Streptomyces viridochromogenes DSM 40736]
Length=88
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/81 (73%), Positives = 65/81 (81%), Gaps = 0/81 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KR +TNE+ARLRNKAVKSSL+TA+R REA AGD KA E R+LDK
Sbjct 1 MANIKSQIKRIKTNEKARLRNKAVKSSLKTAIRKAREAVAAGDVEKATEYQRVAARQLDK 60
Query 61 AASKGVIHKNQAANKKSALAQ 81
A SKGVIHKNQAANKKSALAQ
Sbjct 61 AVSKGVIHKNQAANKKSALAQ 81
>gi|317507853|ref|ZP_07965554.1| ribosomal protein S20 [Segniliparus rugosus ATCC BAA-974]
gi|316253895|gb|EFV13264.1| ribosomal protein S20 [Segniliparus rugosus ATCC BAA-974]
Length=88
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/86 (67%), Positives = 70/86 (82%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KR +TNE AR RN+AV+S+LRTA+R R +A AG++ KAAELL + NR LDK
Sbjct 1 MANIKSQVKRIKTNEAARQRNQAVRSALRTAIRKVRTSAAAGEREKAAELLVAANRSLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
A SKGVIHKN AAN+KSALA +NK+
Sbjct 61 AVSKGVIHKNNAANRKSALAILVNKI 86
>gi|300788522|ref|YP_003768813.1| 30S ribosomal protein S20 [Amycolatopsis mediterranei U32]
gi|299798036|gb|ADJ48411.1| small subunit ribosomal protein S20 [Amycolatopsis mediterranei
U32]
gi|340530127|gb|AEK45332.1| 30S ribosomal protein S20 [Amycolatopsis mediterranei S699]
Length=86
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/86 (68%), Positives = 69/86 (81%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KR TNE+AR RN+A++SS++TA+R REAA AGDKAKA EL +KLDK
Sbjct 1 MANIKSQIKRITTNEKARQRNQAIRSSVKTAIRKVREAAEAGDKAKAVELQRDAAQKLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
A SKGVIH NQAANKKSALA+ +N L
Sbjct 61 AVSKGVIHANQAANKKSALAKRVNAL 86
>gi|312140319|ref|YP_004007655.1| 30S ribosomal protein s20 rpst [Rhodococcus equi 103S]
gi|325677105|ref|ZP_08156774.1| 30S ribosomal protein S20 [Rhodococcus equi ATCC 33707]
gi|311889658|emb|CBH48975.1| 30S ribosomal protein S20 RpsT [Rhodococcus equi 103S]
gi|325552090|gb|EGD21783.1| 30S ribosomal protein S20 [Rhodococcus equi ATCC 33707]
Length=86
Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/86 (76%), Positives = 73/86 (85%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KR RTNER RLRN++VKSSLRTA+R+FREAA AGDK KA ELL +T+RKLDK
Sbjct 1 MANIKSQVKRIRTNERNRLRNQSVKSSLRTAIRSFREAAAAGDKDKANELLVATSRKLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
AA GVIH NQAANKKSALA+ N L
Sbjct 61 AAGAGVIHANQAANKKSALAKVANSL 86
>gi|302528888|ref|ZP_07281230.1| ribosomal protein S20 [Streptomyces sp. AA4]
gi|302437783|gb|EFL09599.1| ribosomal protein S20 [Streptomyces sp. AA4]
Length=86
Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 58/86 (68%), Positives = 68/86 (80%), Gaps = 0/86 (0%)
Query 1 VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK 60
+ANIKSQ KR TNE+AR RN A++SS++TA+R FREAA AGDK KA EL RKLDK
Sbjct 1 MANIKSQVKRITTNEKARQRNLAIRSSVKTAIRKFREAAEAGDKDKALELQRDAARKLDK 60
Query 61 AASKGVIHKNQAANKKSALAQALNKL 86
A +KGVIH NQAANKKSALA+ N+L
Sbjct 61 AVTKGVIHANQAANKKSALAKRANQL 86
Lambda K H
0.309 0.117 0.290
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131009627400
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40