BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2413c Length=316 Score E Sequences producing significant alignments: (Bits) Value gi|15841931|ref|NP_336968.1| hypothetical protein MT2486 [Mycoba... 612 2e-173 gi|31793592|ref|NP_856085.1| hypothetical protein Mb2436c [Mycob... 612 2e-173 gi|289575106|ref|ZP_06455333.1| conserved hypothetical protein [... 612 3e-173 gi|289746194|ref|ZP_06505572.1| conserved hypothetical protein [... 610 1e-172 gi|289754520|ref|ZP_06513898.1| conserved hypothetical protein [... 601 5e-170 gi|240170819|ref|ZP_04749478.1| hypothetical protein MkanA1_1600... 535 3e-150 gi|342857813|ref|ZP_08714469.1| hypothetical protein MCOL_03015 ... 530 8e-149 gi|254819866|ref|ZP_05224867.1| hypothetical protein MintA_08074... 522 2e-146 gi|183983714|ref|YP_001852005.1| DNA polymerase III, delta subun... 516 2e-144 gi|118462813|ref|YP_880994.1| hypothetical protein MAV_1769 [Myc... 511 5e-143 gi|41408323|ref|NP_961159.1| hypothetical protein MAP2225c [Myco... 511 6e-143 gi|118618945|ref|YP_907277.1| hypothetical protein MUL_3677 [Myc... 510 1e-142 gi|254774587|ref|ZP_05216103.1| hypothetical protein MaviaA2_079... 510 1e-142 gi|120404867|ref|YP_954696.1| hypothetical protein Mvan_3913 [My... 504 6e-141 gi|145223251|ref|YP_001133929.1| hypothetical protein Mflv_2664 ... 495 4e-138 gi|108800477|ref|YP_640674.1| hypothetical protein Mmcs_3511 [My... 479 3e-133 gi|126436100|ref|YP_001071791.1| hypothetical protein Mjls_3523 ... 478 5e-133 gi|15827245|ref|NP_301508.1| hypothetical protein ML0603 [Mycoba... 475 3e-132 gi|466975|gb|AAA17161.1| B1937_F2_36 [Mycobacterium leprae] 475 5e-132 gi|333990142|ref|YP_004522756.1| DNA polymerase III subunit delt... 474 6e-132 gi|296170531|ref|ZP_06852115.1| DNA polymerase III [Mycobacteriu... 474 9e-132 gi|118470289|ref|YP_888841.1| hypothetical protein MSMEG_4572 [M... 473 2e-131 gi|169628723|ref|YP_001702372.1| hypothetical protein MAB_1633 [... 433 2e-119 gi|289443936|ref|ZP_06433680.1| conserved hypothetical protein [... 416 3e-114 gi|312140320|ref|YP_004007656.1| DNA polymerase III delta subuni... 387 1e-105 gi|226360420|ref|YP_002778198.1| hypothetical protein ROP_10060 ... 382 3e-104 gi|111018296|ref|YP_701268.1| DNA polymerase III delta subunit [... 382 4e-104 gi|54023361|ref|YP_117603.1| hypothetical protein nfa13940 [Noca... 364 9e-99 gi|333918816|ref|YP_004492397.1| DNA-directed DNA polymerase III... 357 1e-96 gi|226307256|ref|YP_002767216.1| DNA polymerase III delta subuni... 348 6e-94 gi|339295309|gb|AEJ47420.1| hypothetical protein CCDC5079_2230 [... 332 5e-89 gi|300788523|ref|YP_003768814.1| DNA polymerase III subunit delt... 311 7e-83 gi|343926802|ref|ZP_08766295.1| DNA polymerase III delta subunit... 311 9e-83 gi|326381589|ref|ZP_08203283.1| hypothetical protein SCNU_01520 ... 306 3e-81 gi|319949559|ref|ZP_08023606.1| DNA polymerase III delta subunit... 303 3e-80 gi|134098024|ref|YP_001103685.1| hypothetical protein SACE_1438 ... 300 2e-79 gi|296140495|ref|YP_003647738.1| DNA polymerase III subunit delt... 298 9e-79 gi|302528889|ref|ZP_07281231.1| DNA polymerase III, delta subuni... 297 1e-78 gi|262203076|ref|YP_003274284.1| DNA polymerase III subunit delt... 294 1e-77 gi|317507849|ref|ZP_07965550.1| DNA polymerase III [Segniliparus... 291 1e-76 gi|331695853|ref|YP_004332092.1| DNA polymerase III subunit delt... 291 1e-76 gi|257055306|ref|YP_003133138.1| hypothetical protein Svir_12630... 288 1e-75 gi|256375344|ref|YP_003099004.1| hypothetical protein Amir_1206 ... 283 2e-74 gi|296392904|ref|YP_003657788.1| DNA polymerase III delta [Segni... 275 8e-72 gi|339295310|gb|AEJ47421.1| hypothetical protein CCDC5079_2231 [... 272 5e-71 gi|258651779|ref|YP_003200935.1| DNA polymerase III subunit delt... 261 1e-67 gi|325000877|ref|ZP_08121989.1| hypothetical protein PseP1_19027... 256 3e-66 gi|334563976|ref|ZP_08516967.1| DNA polymerase III, delta subuni... 251 9e-65 gi|172041037|ref|YP_001800751.1| DNA polymerase III, delta subun... 247 2e-63 gi|238060580|ref|ZP_04605289.1| DNA polymerase III, delta subuni... 242 5e-62 >gi|15841931|ref|NP_336968.1| hypothetical protein MT2486 [Mycobacterium tuberculosis CDC1551] gi|148823616|ref|YP_001288370.1| hypothetical protein TBFG_12441 [Mycobacterium tuberculosis F11] gi|167969730|ref|ZP_02552007.1| hypothetical protein MtubH3_17575 [Mycobacterium tuberculosis H37Ra] 44 more sequence titles Length=322 Score = 612 bits (1579), Expect = 2e-173, Method: Compositional matrix adjust. Identities = 316/316 (100%), Positives = 316/316 (100%), Gaps = 0/316 (0%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 60 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER Sbjct 7 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 66 Query 61 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR 120 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR Sbjct 67 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR 126 Query 121 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA 180 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA Sbjct 127 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA 186 Query 181 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRVG 240 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRVG Sbjct 187 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRVG 246 Query 241 PQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADYAL 300 PQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADYAL Sbjct 247 PQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADYAL 306 Query 301 ESAVRQVAELVADRGR 316 ESAVRQVAELVADRGR Sbjct 307 ESAVRQVAELVADRGR 322 >gi|31793592|ref|NP_856085.1| hypothetical protein Mb2436c [Mycobacterium bovis AF2122/97] gi|121638294|ref|YP_978518.1| hypothetical protein BCG_2429c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662247|ref|YP_001283770.1| hypothetical protein MRA_2438 [Mycobacterium tuberculosis H37Ra] 20 more sequence titles Length=316 Score = 612 bits (1579), Expect = 2e-173, Method: Compositional matrix adjust. Identities = 315/316 (99%), Positives = 316/316 (100%), Gaps = 0/316 (0%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 60 +HLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER Sbjct 1 MHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 60 Query 61 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR 120 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR Sbjct 61 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR 120 Query 121 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA 180 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA Sbjct 121 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA 180 Query 181 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRVG 240 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRVG Sbjct 181 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRVG 240 Query 241 PQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADYAL 300 PQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADYAL Sbjct 241 PQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADYAL 300 Query 301 ESAVRQVAELVADRGR 316 ESAVRQVAELVADRGR Sbjct 301 ESAVRQVAELVADRGR 316 >gi|289575106|ref|ZP_06455333.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|339632440|ref|YP_004724082.1| hypothetical protein MAF_24280 [Mycobacterium africanum GM041182] gi|289539537|gb|EFD44115.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|339331796|emb|CCC27498.1| conserved hypothetical protein [Mycobacterium africanum GM041182] Length=316 Score = 612 bits (1577), Expect = 3e-173, Method: Compositional matrix adjust. Identities = 314/316 (99%), Positives = 315/316 (99%), Gaps = 0/316 (0%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 60 +HLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER Sbjct 1 MHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 60 Query 61 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR 120 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR Sbjct 61 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR 120 Query 121 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA 180 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA Sbjct 121 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA 180 Query 181 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRVG 240 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRVG Sbjct 181 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRVG 240 Query 241 PQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADYAL 300 PQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAV DADYAL Sbjct 241 PQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVTDADYAL 300 Query 301 ESAVRQVAELVADRGR 316 ESAVRQVAELVADRGR Sbjct 301 ESAVRQVAELVADRGR 316 >gi|289746194|ref|ZP_06505572.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289686722|gb|EFD54210.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] Length=322 Score = 610 bits (1573), Expect = 1e-172, Method: Compositional matrix adjust. Identities = 315/316 (99%), Positives = 315/316 (99%), Gaps = 0/316 (0%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 60 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER Sbjct 7 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 66 Query 61 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR 120 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR Sbjct 67 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR 126 Query 121 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA 180 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA Sbjct 127 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA 186 Query 181 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRVG 240 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRVG Sbjct 187 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRVG 246 Query 241 PQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADYAL 300 PQSGDPYRLAAQLGMPPWRVQKAQKQA RWSRDTVATAMRLVAELNANVKGAVADADYAL Sbjct 247 PQSGDPYRLAAQLGMPPWRVQKAQKQAGRWSRDTVATAMRLVAELNANVKGAVADADYAL 306 Query 301 ESAVRQVAELVADRGR 316 ESAVRQVAELVADRGR Sbjct 307 ESAVRQVAELVADRGR 322 >gi|289754520|ref|ZP_06513898.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289695107|gb|EFD62536.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] Length=312 Score = 601 bits (1549), Expect = 5e-170, Method: Compositional matrix adjust. Identities = 309/310 (99%), Positives = 310/310 (100%), Gaps = 0/310 (0%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 60 +HLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER Sbjct 1 MHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 60 Query 61 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR 120 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR Sbjct 61 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR 120 Query 121 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA 180 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA Sbjct 121 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA 180 Query 181 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRVG 240 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRVG Sbjct 181 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRVG 240 Query 241 PQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADYAL 300 PQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADYAL Sbjct 241 PQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADYAL 300 Query 301 ESAVRQVAEL 310 ESAVRQVAEL Sbjct 301 ESAVRQVAEL 310 >gi|240170819|ref|ZP_04749478.1| hypothetical protein MkanA1_16007 [Mycobacterium kansasii ATCC 12478] Length=327 Score = 535 bits (1379), Expect = 3e-150, Method: Compositional matrix adjust. Identities = 275/321 (86%), Positives = 294/321 (92%), Gaps = 6/321 (1%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTA------DVPVSRMRAGDVGAYELAELLSPS 54 LHLVLGDEELLVERAV ++LRSARQRAG DVP++R+RAGDV YELAELLSPS Sbjct 7 LHLVLGDEELLVERAVGEILRSARQRAGAGAGPGADDVPINRLRAGDVSTYELAELLSPS 66 Query 55 LFAEERIVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQ 114 LFA+ERIVVL AAAEAGKDA A+I S AADLP GTVLVVVHSGGGRAK+LA QL+S+GAQ Sbjct 67 LFADERIVVLEAAAEAGKDAVAMIASTAADLPPGTVLVVVHSGGGRAKALAGQLQSLGAQ 126 Query 115 VHPCARITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGG 174 VHPCARITK+SER DF+R EF LRVK+DDETV ALLDAVGS++RELA+ACSQLVADTGG Sbjct 127 VHPCARITKLSERLDFVRGEFRCLRVKIDDETVAALLDAVGSELRELAAACSQLVADTGG 186 Query 175 AVDAAAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVH 234 VD AAVRRYHSGKAEV+GFDIADKAV GDVAGAAEALRWAMMRGEPLVVLADALAEAVH Sbjct 187 HVDVAAVRRYHSGKAEVKGFDIADKAVTGDVAGAAEALRWAMMRGEPLVVLADALAEAVH 246 Query 235 TIGRVGPQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVA 294 TIGRVGP SGDPYRLAAQLGMPPWRVQKAQKQARRWSRD VATAM+LVAELNANVKGAVA Sbjct 247 TIGRVGPLSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDKVATAMKLVAELNANVKGAVA 306 Query 295 DADYALESAVRQVAELVADRG 315 DADYALESAVR+VAELVADRG Sbjct 307 DADYALESAVRKVAELVADRG 327 >gi|342857813|ref|ZP_08714469.1| hypothetical protein MCOL_03015 [Mycobacterium colombiense CECT 3035] gi|342135146|gb|EGT88312.1| hypothetical protein MCOL_03015 [Mycobacterium colombiense CECT 3035] Length=322 Score = 530 bits (1366), Expect = 8e-149, Method: Compositional matrix adjust. Identities = 267/315 (85%), Positives = 289/315 (92%), Gaps = 0/315 (0%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 60 LHLVLGDEELLVERAVADVLR AR+RAGT DVPV+RMRAGDV YELAELLSPSLFA+ER Sbjct 7 LHLVLGDEELLVERAVADVLRLARKRAGTDDVPVNRMRAGDVSTYELAELLSPSLFADER 66 Query 61 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR 120 IVVL AA EAGKDAA VI SAA D+P G VLVVVHSGGGRAK+LA +L+S+GA+VH CAR Sbjct 67 IVVLEAAGEAGKDAAGVIVSAANDMPTGVVLVVVHSGGGRAKALATELQSLGAEVHACAR 126 Query 121 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA 180 ITK+SER DF+R EF LRVK D+ETVTA+LD+VGSD+RELASACSQLVADTGG VDAAA Sbjct 127 ITKLSERIDFVRKEFRRLRVKADEETVTAMLDSVGSDLRELASACSQLVADTGGVVDAAA 186 Query 181 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRVG 240 VRRYHSGKAEV+GFDIADKAV GD+ GAAEALRWAMMRGEPLVVLADALAEA+HTIGRVG Sbjct 187 VRRYHSGKAEVKGFDIADKAVVGDIEGAAEALRWAMMRGEPLVVLADALAEAIHTIGRVG 246 Query 241 PQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADYAL 300 P SGDPYRLA+QLGMPPWRVQKAQKQARRWSRD+VATAM++VA LNANVKGAV DADYAL Sbjct 247 PLSGDPYRLASQLGMPPWRVQKAQKQARRWSRDSVATAMKVVAALNANVKGAVVDADYAL 306 Query 301 ESAVRQVAELVADRG 315 ESAVRQVAEL A RG Sbjct 307 ESAVRQVAELAAQRG 321 >gi|254819866|ref|ZP_05224867.1| hypothetical protein MintA_08074 [Mycobacterium intracellulare ATCC 13950] Length=323 Score = 522 bits (1345), Expect = 2e-146, Method: Compositional matrix adjust. Identities = 271/317 (86%), Positives = 293/317 (93%), Gaps = 1/317 (0%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGT-ADVPVSRMRAGDVGAYELAELLSPSLFAEE 59 LHLVLGDEELLVERAVADVLRSAR+RAG AD+PV+RMRAGDV YELAELLSPSLFA+E Sbjct 7 LHLVLGDEELLVERAVADVLRSARKRAGNDADIPVNRMRAGDVSTYELAELLSPSLFADE 66 Query 60 RIVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCA 119 RIVVL AA EAGKDAAAVI SAA D+PAG VLVVVHSGGGRAK+LA L+ +GAQVHPCA Sbjct 67 RIVVLEAAGEAGKDAAAVIVSAATDMPAGVVLVVVHSGGGRAKALATDLQKLGAQVHPCA 126 Query 120 RITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAA 179 RITK+SER DF+R EF +LRVK D++TVTA+LDAVGSD+RELASACSQLVADTGGAVDAA Sbjct 127 RITKLSERIDFVRKEFRALRVKADEQTVTAMLDAVGSDLRELASACSQLVADTGGAVDAA 186 Query 180 AVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRV 239 AVRRYHSGKAEV+GFDIADKAVAGD+ GAAEALRWAMMRGEPLVVLADALAEA+HTIGRV Sbjct 187 AVRRYHSGKAEVKGFDIADKAVAGDIEGAAEALRWAMMRGEPLVVLADALAEAIHTIGRV 246 Query 240 GPQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADYA 299 GP SGDPYR+A+QLGMPPWRVQKAQKQAR WSRDTVA AM++VA LNANVKGAVADADYA Sbjct 247 GPLSGDPYRMASQLGMPPWRVQKAQKQARHWSRDTVAAAMQVVAALNANVKGAVADADYA 306 Query 300 LESAVRQVAELVADRGR 316 LESAVRQVAEL A R R Sbjct 307 LESAVRQVAELAAQRSR 323 >gi|183983714|ref|YP_001852005.1| DNA polymerase III, delta subunit HolA [Mycobacterium marinum M] gi|183177040|gb|ACC42150.1| DNA polymerase III, delta subunit HolA [Mycobacterium marinum M] Length=325 Score = 516 bits (1328), Expect = 2e-144, Method: Compositional matrix adjust. Identities = 268/318 (85%), Positives = 292/318 (92%), Gaps = 4/318 (1%) Query 1 LHLVLGDEELLVERAVADVLRSARQRA----GTADVPVSRMRAGDVGAYELAELLSPSLF 56 LHLVLGDEELLVERAV D++R+AR+RA GT DVPV+RMRAGDV YELAELLSPSLF Sbjct 7 LHLVLGDEELLVERAVGDIVRAARERARQAAGTDDVPVNRMRAGDVSTYELAELLSPSLF 66 Query 57 AEERIVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVH 116 AEERIVVL AAAEAGKDA A+I S AAD+P GTVLVVVHSGGGRAK+LA +L+S+GAQVH Sbjct 67 AEERIVVLEAAAEAGKDAVALIASTAADIPPGTVLVVVHSGGGRAKALAGELKSLGAQVH 126 Query 117 PCARITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAV 176 PCARI+K SER DF+R EF +LRVKV ++TVTALLDAVGSD+RELASACSQLVADTGG V Sbjct 127 PCARISKASERVDFVRGEFRALRVKVGEDTVTALLDAVGSDIRELASACSQLVADTGGDV 186 Query 177 DAAAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTI 236 DA AVRRYHSGKAEV+GFDIADKAVAGDVAGA EALRWAMMRGEPLVVLADALAEA+HTI Sbjct 187 DAVAVRRYHSGKAEVKGFDIADKAVAGDVAGATEALRWAMMRGEPLVVLADALAEAIHTI 246 Query 237 GRVGPQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADA 296 GRVGP SGDPYR+A+QLGMPPWRVQKAQKQARRWSRD VATAM+LVA+LNA+VKGA ADA Sbjct 247 GRVGPLSGDPYRMASQLGMPPWRVQKAQKQARRWSRDKVATAMQLVAQLNADVKGAAADA 306 Query 297 DYALESAVRQVAELVADR 314 DYALESAVR VAELVADR Sbjct 307 DYALESAVRTVAELVADR 324 >gi|118462813|ref|YP_880994.1| hypothetical protein MAV_1769 [Mycobacterium avium 104] gi|118164100|gb|ABK64997.1| DNA polymerase III, delta subunit [Mycobacterium avium 104] Length=325 Score = 511 bits (1316), Expect = 5e-143, Method: Compositional matrix adjust. Identities = 270/319 (85%), Positives = 292/319 (92%), Gaps = 3/319 (0%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGT---ADVPVSRMRAGDVGAYELAELLSPSLFA 57 LHLVLGDEELLVERAVA+VL AR+RAG ADVPV+RMRAGDV YELAELLSPSLFA Sbjct 7 LHLVLGDEELLVERAVAEVLAEARKRAGASGDADVPVNRMRAGDVSTYELAELLSPSLFA 66 Query 58 EERIVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHP 117 +ERIVVL AA EAGKDAAAVI SAAA++PAG VLVVVHSGGGRAK+LA +L+S+GA VHP Sbjct 67 DERIVVLEAAGEAGKDAAAVILSAAAEMPAGVVLVVVHSGGGRAKALATELQSLGAVVHP 126 Query 118 CARITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVD 177 CARITK+SER DF+R EF LRVK D+ETVTA+LDAVGSD+RELASACSQLVADTGGAVD Sbjct 127 CARITKLSERIDFVRKEFRRLRVKADEETVTAMLDAVGSDLRELASACSQLVADTGGAVD 186 Query 178 AAAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIG 237 AAAVRRYHSGKAEV+GFDIADKAVAGD+ GAAEALRWAMMRGEPLVVLADALAEA+HTIG Sbjct 187 AAAVRRYHSGKAEVKGFDIADKAVAGDIEGAAEALRWAMMRGEPLVVLADALAEAIHTIG 246 Query 238 RVGPQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADAD 297 RVGP SGDPYRLAAQLGMPPWRVQKAQKQAR WSRD+VATAM++VA LNANVKGAVADAD Sbjct 247 RVGPLSGDPYRLAAQLGMPPWRVQKAQKQARYWSRDSVATAMKVVATLNANVKGAVADAD 306 Query 298 YALESAVRQVAELVADRGR 316 YALESAVR+VAEL R R Sbjct 307 YALESAVRRVAELAGGRNR 325 >gi|41408323|ref|NP_961159.1| hypothetical protein MAP2225c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396679|gb|AAS04542.1| hypothetical protein MAP_2225c [Mycobacterium avium subsp. paratuberculosis K-10] gi|336458240|gb|EGO37221.1| DNA polymerase III, delta subunit [Mycobacterium avium subsp. paratuberculosis S397] Length=325 Score = 511 bits (1316), Expect = 6e-143, Method: Compositional matrix adjust. Identities = 269/319 (85%), Positives = 292/319 (92%), Gaps = 3/319 (0%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGT---ADVPVSRMRAGDVGAYELAELLSPSLFA 57 LHLVLGDEELLVERAVA+VL AR+RAG ADVP++RMRAGDV YELAELLSPSLFA Sbjct 7 LHLVLGDEELLVERAVAEVLAEARKRAGASGDADVPINRMRAGDVSTYELAELLSPSLFA 66 Query 58 EERIVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHP 117 +ERIVVL AA EAGKDAAAVI SAAA++PAG VLVVVHSGGGRAK+LA +L+S+GA VHP Sbjct 67 DERIVVLEAAGEAGKDAAAVILSAAAEMPAGVVLVVVHSGGGRAKALATELQSLGAVVHP 126 Query 118 CARITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVD 177 CARITK+SER DF+R EF LRVK D+ETVTA+LDAVGSD+RELASACSQLVADTGGAVD Sbjct 127 CARITKLSERIDFVRKEFRRLRVKADEETVTAMLDAVGSDLRELASACSQLVADTGGAVD 186 Query 178 AAAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIG 237 AAAVRRYHSGKAEV+GFDIADKAVAGD+ GAAEALRWAMMRGEPLVVLADALAEA+HTIG Sbjct 187 AAAVRRYHSGKAEVKGFDIADKAVAGDIEGAAEALRWAMMRGEPLVVLADALAEAIHTIG 246 Query 238 RVGPQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADAD 297 RVGP SGDPYRLAAQLGMPPWRVQKAQKQAR WSRD+VATAM++VA LNANVKGAVADAD Sbjct 247 RVGPLSGDPYRLAAQLGMPPWRVQKAQKQARYWSRDSVATAMKVVATLNANVKGAVADAD 306 Query 298 YALESAVRQVAELVADRGR 316 YALESAVR+VAEL R R Sbjct 307 YALESAVRRVAELAGGRNR 325 >gi|118618945|ref|YP_907277.1| hypothetical protein MUL_3677 [Mycobacterium ulcerans Agy99] gi|118571055|gb|ABL05806.1| DNA polymerase III, delta subunit HolA [Mycobacterium ulcerans Agy99] Length=325 Score = 510 bits (1314), Expect = 1e-142, Method: Compositional matrix adjust. Identities = 265/318 (84%), Positives = 290/318 (92%), Gaps = 4/318 (1%) Query 1 LHLVLGDEELLVERAVADVLRSARQRA----GTADVPVSRMRAGDVGAYELAELLSPSLF 56 LHLVLGDEELLVERAV D++R+AR+RA GT DVPV+RMRAGDV YELAELLSPSLF Sbjct 7 LHLVLGDEELLVERAVGDIVRAARERARQAAGTDDVPVNRMRAGDVSTYELAELLSPSLF 66 Query 57 AEERIVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVH 116 AEERIVVL AAAEAGKDA A+I S AAD+P GTVLVVVHSGGGR K+LA +L+S+GAQVH Sbjct 67 AEERIVVLEAAAEAGKDAVALIASTAADIPPGTVLVVVHSGGGRTKALAGELKSLGAQVH 126 Query 117 PCARITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAV 176 PCARI+K SER DF+R EF +LRVKV ++TVTALLDAVGSD+RELASACSQLVADTGG V Sbjct 127 PCARISKASERVDFVRGEFRALRVKVGEDTVTALLDAVGSDIRELASACSQLVADTGGDV 186 Query 177 DAAAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTI 236 DA AVRRYHSGKAEV+GFDIADKAVAGDVAGA EALRWAMMRGEPL+VLADALAEA+HTI Sbjct 187 DAVAVRRYHSGKAEVKGFDIADKAVAGDVAGATEALRWAMMRGEPLLVLADALAEAIHTI 246 Query 237 GRVGPQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADA 296 GRVGP SGDPYR+A+QLGM PWRVQKAQKQARRWSRD VATAM+LVA+LNA+VKGA ADA Sbjct 247 GRVGPLSGDPYRMASQLGMRPWRVQKAQKQARRWSRDKVATAMQLVAQLNADVKGAAADA 306 Query 297 DYALESAVRQVAELVADR 314 DYALESAVR VAELVADR Sbjct 307 DYALESAVRTVAELVADR 324 >gi|254774587|ref|ZP_05216103.1| hypothetical protein MaviaA2_07948 [Mycobacterium avium subsp. avium ATCC 25291] Length=325 Score = 510 bits (1313), Expect = 1e-142, Method: Compositional matrix adjust. Identities = 269/319 (85%), Positives = 292/319 (92%), Gaps = 3/319 (0%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGT---ADVPVSRMRAGDVGAYELAELLSPSLFA 57 LHLVLGDEELLVERAVA+VL AR+RAG ADVPV+RMRAGDV YELAELLSPSLFA Sbjct 7 LHLVLGDEELLVERAVAEVLAEARKRAGASGDADVPVNRMRAGDVSTYELAELLSPSLFA 66 Query 58 EERIVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHP 117 +ERIVVL AA EAGKDAAAVI SAAA++PAG VLVVVHSGGGRAK+LA +L+++GA VHP Sbjct 67 DERIVVLEAAGEAGKDAAAVILSAAAEMPAGVVLVVVHSGGGRAKALATELQALGAVVHP 126 Query 118 CARITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVD 177 CARITK+SER DF+R EF LRVK D+ETVTA+LDAVGSD+RELASACSQLVADTGGAVD Sbjct 127 CARITKLSERIDFVRKEFRRLRVKADEETVTAMLDAVGSDLRELASACSQLVADTGGAVD 186 Query 178 AAAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIG 237 AAAVRRYHSGKAEV+GFDIADKAVAGD+ GAAEALRWAMMRGEPLVVLADALAEA+HTIG Sbjct 187 AAAVRRYHSGKAEVKGFDIADKAVAGDIEGAAEALRWAMMRGEPLVVLADALAEAIHTIG 246 Query 238 RVGPQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADAD 297 RVGP SGDPYRLAAQLGMPPWRVQKAQKQAR WSRD+VATAM++VA LNANVKGAVADAD Sbjct 247 RVGPLSGDPYRLAAQLGMPPWRVQKAQKQARYWSRDSVATAMKVVATLNANVKGAVADAD 306 Query 298 YALESAVRQVAELVADRGR 316 YALESAVR+VAEL R R Sbjct 307 YALESAVRRVAELAGGRNR 325 >gi|120404867|ref|YP_954696.1| hypothetical protein Mvan_3913 [Mycobacterium vanbaalenii PYR-1] gi|119957685|gb|ABM14690.1| DNA polymerase III, delta [Mycobacterium vanbaalenii PYR-1] Length=316 Score = 504 bits (1299), Expect = 6e-141, Method: Compositional matrix adjust. Identities = 254/313 (82%), Positives = 287/313 (92%), Gaps = 0/313 (0%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 60 LHLVLGDEELLVERAVA+VLR+AR AGT+DVPV R+RAG+V ELAELLSPSLFA+ER Sbjct 4 LHLVLGDEELLVERAVAEVLRTARASAGTSDVPVDRLRAGEVSVSELAELLSPSLFADER 63 Query 61 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR 120 +VVL +AAEAGKDA A+I++AAADLP GT+LVVVHSGGGRAK+LA+QL+ +GA+VHPCAR Sbjct 64 VVVLESAAEAGKDAVALIQTAAADLPDGTLLVVVHSGGGRAKALADQLKKLGAEVHPCAR 123 Query 121 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA 180 ITK SERADF+R EF +LRVKVD+ TVTA+LDA+GSD+RELA+ACSQLVADTGGAVDAAA Sbjct 124 ITKASERADFVRKEFRTLRVKVDEATVTAVLDALGSDIRELAAACSQLVADTGGAVDAAA 183 Query 181 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRVG 240 VRRY+SG+AEV+GFDIADKAV GDVAGAAEALRWAMM GEP VVLADALAEAVHTI RVG Sbjct 184 VRRYYSGRAEVKGFDIADKAVVGDVAGAAEALRWAMMAGEPHVVLADALAEAVHTIARVG 243 Query 241 PQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADYAL 300 P SGDPYRLA +LGMPPWRVQKAQKQARRWSRD+VA A+RLVA LNA+VKGA ADADYAL Sbjct 244 PLSGDPYRLAGELGMPPWRVQKAQKQARRWSRDSVAQALRLVAALNADVKGAAADADYAL 303 Query 301 ESAVRQVAELVAD 313 E AVR VAEL ++ Sbjct 304 EKAVRSVAELASE 316 >gi|145223251|ref|YP_001133929.1| hypothetical protein Mflv_2664 [Mycobacterium gilvum PYR-GCK] gi|315443711|ref|YP_004076590.1| DNA polymerase III subunit delta [Mycobacterium sp. Spyr1] gi|145215737|gb|ABP45141.1| DNA polymerase III, delta [Mycobacterium gilvum PYR-GCK] gi|315262014|gb|ADT98755.1| DNA polymerase III, delta subunit [Mycobacterium sp. Spyr1] Length=319 Score = 495 bits (1274), Expect = 4e-138, Method: Compositional matrix adjust. Identities = 255/313 (82%), Positives = 287/313 (92%), Gaps = 0/313 (0%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 60 LHLVLGDEELLVERAVA VL+SAR+ AGTADVPV R+RAG+V ELAELLSPSLFA+ER Sbjct 7 LHLVLGDEELLVERAVAAVLKSARKSAGTADVPVDRLRAGEVSVSELAELLSPSLFADER 66 Query 61 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR 120 +VVL +AAEAGK+A A+I+SAAADLPAGT+LV+VHSGGGRAK+LA+ ++ +GA+VHPCAR Sbjct 67 VVVLESAAEAGKEAVALIQSAAADLPAGTLLVIVHSGGGRAKALADHVKKLGAEVHPCAR 126 Query 121 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA 180 I K SERADF+R EF SLRVKVDD+TVTA+LDAVGSD+RELA+ACSQLVADTGG+VDAAA Sbjct 127 IAKASERADFVRKEFRSLRVKVDDDTVTAVLDAVGSDIRELAAACSQLVADTGGSVDAAA 186 Query 181 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRVG 240 VRRYHSG+AEV+GFDIADKAV GDVAGAAEALRWAMM GEP VVLADALAEAVHTI RVG Sbjct 187 VRRYHSGRAEVKGFDIADKAVLGDVAGAAEALRWAMMAGEPHVVLADALAEAVHTIARVG 246 Query 241 PQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADYAL 300 P SGDPYRLA +LGMPPWRVQKAQKQARRWSRD+VA A+R+VA LNA+VKGA ADADYAL Sbjct 247 PLSGDPYRLAGELGMPPWRVQKAQKQARRWSRDSVAEAVRVVAALNADVKGAAADADYAL 306 Query 301 ESAVRQVAELVAD 313 E AVR VA LV+D Sbjct 307 EKAVRSVANLVSD 319 >gi|108800477|ref|YP_640674.1| hypothetical protein Mmcs_3511 [Mycobacterium sp. MCS] gi|119869615|ref|YP_939567.1| hypothetical protein Mkms_3583 [Mycobacterium sp. KMS] gi|108770896|gb|ABG09618.1| DNA polymerase III, delta subunit [Mycobacterium sp. MCS] gi|119695704|gb|ABL92777.1| DNA polymerase III, delta subunit [Mycobacterium sp. KMS] Length=320 Score = 479 bits (1232), Expect = 3e-133, Method: Compositional matrix adjust. Identities = 249/313 (80%), Positives = 279/313 (90%), Gaps = 0/313 (0%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 60 LHLVLGDEELLVERAVA VL+SAR+ AGT DVPV R+RAG+V ELAELLSPSLF++ER Sbjct 8 LHLVLGDEELLVERAVAAVLKSARKLAGTDDVPVDRLRAGEVSTSELAELLSPSLFSDER 67 Query 61 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR 120 +VVL +AAEAGKDA A+I AAADLP GT+LVVVHSGGGRAK+LA+QL+ +GA+VHPCA+ Sbjct 68 VVVLESAAEAGKDAVALIAGAAADLPPGTMLVVVHSGGGRAKALADQLKKLGAEVHPCAK 127 Query 121 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA 180 I K ++RADF+R EF S +VKV D+TVTA+LDAVGSD+RELA+ACSQLVADT G V A A Sbjct 128 IAKAADRADFVRREFRSHKVKVTDDTVTAVLDAVGSDIRELAAACSQLVADTAGEVTAVA 187 Query 181 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRVG 240 VRRYHSGKAEV+GFDIADKAV GDVAGAAEALRWAM+ GEP VVLADALAEAVHTI RV Sbjct 188 VRRYHSGKAEVKGFDIADKAVTGDVAGAAEALRWAMLSGEPQVVLADALAEAVHTIARVA 247 Query 241 PQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADYAL 300 P SGDPYRLA +LGMPPWRVQKAQKQARRWSR +VA AMRLVA LNA+VKGA ADADYAL Sbjct 248 PLSGDPYRLAGELGMPPWRVQKAQKQARRWSRASVAEAMRLVAALNADVKGAAADADYAL 307 Query 301 ESAVRQVAELVAD 313 ESAVR+VAELVAD Sbjct 308 ESAVRRVAELVAD 320 >gi|126436100|ref|YP_001071791.1| hypothetical protein Mjls_3523 [Mycobacterium sp. JLS] gi|126235900|gb|ABN99300.1| DNA polymerase III, delta subunit [Mycobacterium sp. JLS] Length=320 Score = 478 bits (1230), Expect = 5e-133, Method: Compositional matrix adjust. Identities = 248/313 (80%), Positives = 279/313 (90%), Gaps = 0/313 (0%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 60 LHLVLGDEELLVERAVA V++SAR+ AGT DVPV R+RAG+V ELAELLSPSLF++ER Sbjct 8 LHLVLGDEELLVERAVAAVMKSARKLAGTDDVPVDRLRAGEVSTSELAELLSPSLFSDER 67 Query 61 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR 120 +VVL +AAEAGKDA A+I AAADLP GT+LVVVHSGGGRAK+LA+QL+ +GA+VHPCA+ Sbjct 68 VVVLESAAEAGKDAVALIAGAAADLPPGTMLVVVHSGGGRAKALADQLKKLGAEVHPCAK 127 Query 121 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA 180 I K ++RADF+R EF S +VKV D+TVTA+LDAVGSD+RELA+ACSQLVADT G V A A Sbjct 128 IAKAADRADFVRREFRSHKVKVTDDTVTAVLDAVGSDIRELAAACSQLVADTAGEVTAVA 187 Query 181 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRVG 240 VRRYHSGKAEV+GFDIADKAV GDVAGAAEALRWAM+ GEP VVLADALAEAVHTI RV Sbjct 188 VRRYHSGKAEVKGFDIADKAVTGDVAGAAEALRWAMLSGEPQVVLADALAEAVHTIARVA 247 Query 241 PQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADYAL 300 P SGDPYRLA +LGMPPWRVQKAQKQARRWSR +VA AMRLVA LNA+VKGA ADADYAL Sbjct 248 PLSGDPYRLAGELGMPPWRVQKAQKQARRWSRASVAEAMRLVAALNADVKGAAADADYAL 307 Query 301 ESAVRQVAELVAD 313 ESAVR+VAELVAD Sbjct 308 ESAVRRVAELVAD 320 >gi|15827245|ref|NP_301508.1| hypothetical protein ML0603 [Mycobacterium leprae TN] gi|221229723|ref|YP_002503139.1| hypothetical protein MLBr_00603 [Mycobacterium leprae Br4923] gi|2398690|emb|CAB16150.1| hypothetical protein MLCL536.07c [Mycobacterium leprae] gi|13092794|emb|CAC30111.1| putative lipoprotein [Mycobacterium leprae] gi|219932830|emb|CAR70696.1| putative lipoprotein [Mycobacterium leprae Br4923] Length=371 Score = 475 bits (1223), Expect = 3e-132, Method: Compositional matrix adjust. Identities = 265/316 (84%), Positives = 288/316 (92%), Gaps = 0/316 (0%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 60 LHLVLG+EELLVERAV +VLRSARQRAGT DVPVSRMRAGDVG YEL ELLSPSLFA+ER Sbjct 56 LHLVLGNEELLVERAVGEVLRSARQRAGTQDVPVSRMRAGDVGTYELTELLSPSLFADER 115 Query 61 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR 120 IVVL AAAEAGK+AAA+I SAAAD+P GTVLVVVHSGGGRAK+LAN+L+S+GA VHPCAR Sbjct 116 IVVLEAAAEAGKEAAALIVSAAADIPQGTVLVVVHSGGGRAKALANELQSLGATVHPCAR 175 Query 121 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA 180 ITK+SER DF+R E SLRVKVD+ VTALL+AVGSDVRELASACSQLVADT G VDA A Sbjct 176 ITKLSERTDFVRKELRSLRVKVDEGAVTALLNAVGSDVRELASACSQLVADTAGDVDADA 235 Query 181 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRVG 240 V+RYHSGKAEV+GFDIADKAV GDV+GA EALRWAMMRGEPLVVLADALAEAVHTIGRVG Sbjct 236 VQRYHSGKAEVKGFDIADKAVGGDVSGAVEALRWAMMRGEPLVVLADALAEAVHTIGRVG 295 Query 241 PQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADYAL 300 P SGD YRLA++LGMPPWRVQKAQ+QARRWSRDTVA AMR+VA LNA+VKGA ADA YAL Sbjct 296 PLSGDSYRLASRLGMPPWRVQKAQQQARRWSRDTVAAAMRVVAALNADVKGAAADAYYAL 355 Query 301 ESAVRQVAELVADRGR 316 ESAVR+VAEL AD R Sbjct 356 ESAVRKVAELAADGSR 371 >gi|466975|gb|AAA17161.1| B1937_F2_36 [Mycobacterium leprae] Length=389 Score = 475 bits (1222), Expect = 5e-132, Method: Compositional matrix adjust. Identities = 265/316 (84%), Positives = 288/316 (92%), Gaps = 0/316 (0%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 60 LHLVLG+EELLVERAV +VLRSARQRAGT DVPVSRMRAGDVG YEL ELLSPSLFA+ER Sbjct 74 LHLVLGNEELLVERAVGEVLRSARQRAGTQDVPVSRMRAGDVGTYELTELLSPSLFADER 133 Query 61 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR 120 IVVL AAAEAGK+AAA+I SAAAD+P GTVLVVVHSGGGRAK+LAN+L+S+GA VHPCAR Sbjct 134 IVVLEAAAEAGKEAAALIVSAAADIPQGTVLVVVHSGGGRAKALANELQSLGATVHPCAR 193 Query 121 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA 180 ITK+SER DF+R E SLRVKVD+ VTALL+AVGSDVRELASACSQLVADT G VDA A Sbjct 194 ITKLSERTDFVRKELRSLRVKVDEGAVTALLNAVGSDVRELASACSQLVADTAGDVDADA 253 Query 181 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRVG 240 V+RYHSGKAEV+GFDIADKAV GDV+GA EALRWAMMRGEPLVVLADALAEAVHTIGRVG Sbjct 254 VQRYHSGKAEVKGFDIADKAVGGDVSGAVEALRWAMMRGEPLVVLADALAEAVHTIGRVG 313 Query 241 PQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADYAL 300 P SGD YRLA++LGMPPWRVQKAQ+QARRWSRDTVA AMR+VA LNA+VKGA ADA YAL Sbjct 314 PLSGDSYRLASRLGMPPWRVQKAQQQARRWSRDTVAAAMRVVAALNADVKGAAADAYYAL 373 Query 301 ESAVRQVAELVADRGR 316 ESAVR+VAEL AD R Sbjct 374 ESAVRKVAELAADGSR 389 >gi|333990142|ref|YP_004522756.1| DNA polymerase III subunit delta [Mycobacterium sp. JDM601] gi|333486110|gb|AEF35502.1| DNA polymerase III delta subunit HolA [Mycobacterium sp. JDM601] Length=320 Score = 474 bits (1221), Expect = 6e-132, Method: Compositional matrix adjust. Identities = 239/312 (77%), Positives = 276/312 (89%), Gaps = 0/312 (0%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 60 LHL+LGDEELLVERAVA VL + R +AG+AD+PV R+RAG+V A ELAELLSPSLFA+ER Sbjct 8 LHLILGDEELLVERAVAQVLAAVRAQAGSADIPVDRLRAGEVEAGELAELLSPSLFADER 67 Query 61 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR 120 +VVL AA EAGKDA +I + AAD+P GTVLVV HSGGGRAK+LA QLR +GA+VHPCAR Sbjct 68 VVVLEAAGEAGKDAVTLIGATAADVPPGTVLVVAHSGGGRAKALAGQLRQLGAEVHPCAR 127 Query 121 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA 180 ITK +ERADF+R+EF L+V+VDD VTALLDAVGSD+RELA+ACSQLVADTGG VDA A Sbjct 128 ITKATERADFVRAEFRRLKVRVDDACVTALLDAVGSDIRELAAACSQLVADTGGHVDAVA 187 Query 181 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRVG 240 VRRYHSGKAEV+GFD+AD+AV GDV GA EALRWAM+RGEP VVLADALAEA+HTI RV Sbjct 188 VRRYHSGKAEVKGFDVADRAVVGDVEGATEALRWAMIRGEPHVVLADALAEAIHTIARVR 247 Query 241 PQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADYAL 300 P+SGDPYRLA +LGMPPWRVQ+AQKQAR WS+++VA A+RLVA LNA+VKGA ADADYAL Sbjct 248 PRSGDPYRLAGELGMPPWRVQRAQKQARHWSQESVAAAVRLVAGLNADVKGAAADADYAL 307 Query 301 ESAVRQVAELVA 312 E+AVR+VAEL A Sbjct 308 EAAVRKVAELAA 319 >gi|296170531|ref|ZP_06852115.1| DNA polymerase III [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894763|gb|EFG74488.1| DNA polymerase III [Mycobacterium parascrofulaceum ATCC BAA-614] Length=325 Score = 474 bits (1219), Expect = 9e-132, Method: Compositional matrix adjust. Identities = 274/319 (86%), Positives = 295/319 (93%), Gaps = 3/319 (0%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGT---ADVPVSRMRAGDVGAYELAELLSPSLFA 57 LHLVLGDEELLVERAVADVLRSARQRAG+ DVPVSRMRAGDV YELAELLSPSLF Sbjct 7 LHLVLGDEELLVERAVADVLRSARQRAGSHNEPDVPVSRMRAGDVSTYELAELLSPSLFG 66 Query 58 EERIVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHP 117 +ERIVVL AA EAGK+AAAVI +AAAD+P GT+LVVVHSGGGRAKSLA +L+S+GA VHP Sbjct 67 DERIVVLEAAGEAGKEAAAVIAAAAADVPLGTMLVVVHSGGGRAKSLATELQSLGAVVHP 126 Query 118 CARITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVD 177 CARITKVSER DF+R EF +LRVKVD++TVTA+LDAVGSDVRELA+ACSQLVADTGG VD Sbjct 127 CARITKVSERVDFVRKEFRALRVKVDEDTVTAMLDAVGSDVRELAAACSQLVADTGGVVD 186 Query 178 AAAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIG 237 AAAVRRYHSGKAEV+GFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIG Sbjct 187 AAAVRRYHSGKAEVKGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIG 246 Query 238 RVGPQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADAD 297 RVGP SGDPYRLA+QLGMPPWRVQKAQKQAR WSRD+VA AM++VA LNANVKGAVADAD Sbjct 247 RVGPLSGDPYRLASQLGMPPWRVQKAQKQARYWSRDSVAAAMKVVAALNANVKGAVADAD 306 Query 298 YALESAVRQVAELVADRGR 316 YALESAVR+VAEL A R R Sbjct 307 YALESAVRKVAELAAHRNR 325 >gi|118470289|ref|YP_888841.1| hypothetical protein MSMEG_4572 [Mycobacterium smegmatis str. MC2 155] gi|118171576|gb|ABK72472.1| DNA polymerase III, delta subunit [Mycobacterium smegmatis str. MC2 155] Length=319 Score = 473 bits (1217), Expect = 2e-131, Method: Compositional matrix adjust. Identities = 245/312 (79%), Positives = 279/312 (90%), Gaps = 0/312 (0%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 60 LHLVLGDEELLVERAV +LR R+RAG+ DVPV R+RAG+V ELAELLSPSLFAEER Sbjct 7 LHLVLGDEELLVERAVGAILRDIRKRAGSDDVPVDRLRAGEVSTSELAELLSPSLFAEER 66 Query 61 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR 120 +VVL AAAEAGKDA A+I SAAADLP GTVLVV+HSGGGRAK+LA+QL+ +GA+VHPCAR Sbjct 67 LVVLEAAAEAGKDAVALIASAAADLPPGTVLVVIHSGGGRAKALADQLKKLGAEVHPCAR 126 Query 121 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA 180 ITK +ERADF+RSEF LR KV ++TV+A+LDAVGS++RELA+ CSQLVADT G VDAAA Sbjct 127 ITKPAERADFVRSEFRRLRAKVSEDTVSAVLDAVGSNIRELAAVCSQLVADTAGEVDAAA 186 Query 181 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRVG 240 VRRYHSGKAEV+GFDIADKAV GDVAGAAEALRWAM+ GEP VVLADALAEAVHTI RVG Sbjct 187 VRRYHSGKAEVKGFDIADKAVVGDVAGAAEALRWAMLAGEPHVVLADALAEAVHTIARVG 246 Query 241 PQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADYAL 300 P SGDPYRLA +LGMPPWRVQKAQKQ+RRWSR++VA AM++VA LNA+VKG ADADYAL Sbjct 247 PLSGDPYRLAGELGMPPWRVQKAQKQSRRWSRESVAEAMKVVAALNADVKGVAADADYAL 306 Query 301 ESAVRQVAELVA 312 E+AVR+VA+L A Sbjct 307 EAAVRRVAQLAA 318 >gi|169628723|ref|YP_001702372.1| hypothetical protein MAB_1633 [Mycobacterium abscessus ATCC 19977] gi|169240690|emb|CAM61718.1| Putative DNA polymerase III delta subunit [Mycobacterium abscessus] Length=316 Score = 433 bits (1114), Expect = 2e-119, Method: Compositional matrix adjust. Identities = 219/312 (71%), Positives = 258/312 (83%), Gaps = 1/312 (0%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 60 LHL+LGDEELLVERAV VL + R +AG AD+PV+R+RAG V ELAELLSPSLFA+ER Sbjct 5 LHLILGDEELLVERAVTSVLHAVRGKAG-ADIPVNRLRAGQVDVAELAELLSPSLFADER 63 Query 61 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR 120 ++V+ AAAEAGKDA +IE AA DLP GT L+V HSGGGRAK+LA L+++GA VH CAR Sbjct 64 VIVIEAAAEAGKDAVTLIEQAATDLPPGTFLLVQHSGGGRAKALATTLQNLGASVHNCAR 123 Query 121 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA 180 ITK +ERADF+ EF L KVD + V ++DAVGSD+RELA+ACSQLV+DT G+VD AA Sbjct 124 ITKAAERADFVHKEFRRLGQKVDADVVAIVIDAVGSDIRELAAACSQLVSDTDGSVDGAA 183 Query 181 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRVG 240 VRRYHSG+AEV GFDIADKAV GD+AG+ E LRWAM RG P V+LADALAEAVHTI RVG Sbjct 184 VRRYHSGRAEVSGFDIADKAVTGDIAGSTETLRWAMQRGVPHVLLADALAEAVHTIARVG 243 Query 241 PQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADYAL 300 P + Y A++LGMPPWR++KAQKQARRW+RD VA AMR+VA LNA+VKG ADADYAL Sbjct 244 PIKQNAYAAASELGMPPWRIEKAQKQARRWTRDAVAEAMRVVAALNADVKGVAADADYAL 303 Query 301 ESAVRQVAELVA 312 ESAVR+VAELV+ Sbjct 304 ESAVRRVAELVS 315 >gi|289443936|ref|ZP_06433680.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289416855|gb|EFD14095.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] Length=220 Score = 416 bits (1068), Expect = 3e-114, Method: Compositional matrix adjust. Identities = 210/211 (99%), Positives = 210/211 (99%), Gaps = 0/211 (0%) Query 106 NQLRSMGAQVHPCARITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASAC 165 QLRSMGAQVHPCARITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASAC Sbjct 10 TQLRSMGAQVHPCARITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASAC 69 Query 166 SQLVADTGGAVDAAAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVL 225 SQLVADTGGAVDAAAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVL Sbjct 70 SQLVADTGGAVDAAAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVL 129 Query 226 ADALAEAVHTIGRVGPQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAEL 285 ADALAEAVHTIGRVGPQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAEL Sbjct 130 ADALAEAVHTIGRVGPQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAEL 189 Query 286 NANVKGAVADADYALESAVRQVAELVADRGR 316 NANVKGAVADADYALESAVRQVAELVADRGR Sbjct 190 NANVKGAVADADYALESAVRQVAELVADRGR 220 >gi|312140320|ref|YP_004007656.1| DNA polymerase III delta subunit [Rhodococcus equi 103S] gi|325677104|ref|ZP_08156773.1| DNA-directed DNA polymerase III delta subunit [Rhodococcus equi ATCC 33707] gi|311889659|emb|CBH48976.1| DNA polymerase III delta subunit [Rhodococcus equi 103S] gi|325552089|gb|EGD21782.1| DNA-directed DNA polymerase III delta subunit [Rhodococcus equi ATCC 33707] Length=325 Score = 387 bits (993), Expect = 1e-105, Method: Compositional matrix adjust. Identities = 202/317 (64%), Positives = 254/317 (81%), Gaps = 4/317 (1%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTA--DVPVSRMRAGDVGAYELAELLSPSLFAE 58 LHLVLGDEE LVERAVA V+ + R+ AG+A D+PVSR+RAGD A ELAELLSPSLFAE Sbjct 10 LHLVLGDEEFLVERAVASVIAAVREAAGSAGQDMPVSRLRAGDASAPELAELLSPSLFAE 69 Query 59 ERIVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPC 118 +R+VVL AAAEAGKDA A+++ AAADLP G VLVV+HSGGGRAK++A L+ GA VH C Sbjct 70 DRVVVLEAAAEAGKDAVALVQDAAADLPEGVVLVVLHSGGGRAKAMAGVLQKSGAVVHQC 129 Query 119 ARITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDA 178 A++ K +ER DF+R EF + V+V E + +++AVGSD+RELA+ACSQLVADTGG +DA Sbjct 130 AKL-KANERVDFVRGEFRTAGVRVSPEVIELVVEAVGSDLRELAAACSQLVADTGGKIDA 188 Query 179 AAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGR 238 +AV+RY+SGKAEV GFD+ADKAVAGD GA E+LRWAM RG P V+LADALA+AVHTI R Sbjct 189 SAVQRYYSGKAEVSGFDVADKAVAGDRRGAMESLRWAMHRGVPHVLLADALADAVHTIAR 248 Query 239 VGPQS-GDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADAD 297 VG GDP+R+A++LGMPPW+++KAQ Q R W ++ A+++VA LNA VKG ADAD Sbjct 249 VGSAGRGDPFRMASELGMPPWKIKKAQAQVRGWDPASIGEALQVVARLNAEVKGQAADAD 308 Query 298 YALESAVRQVAELVADR 314 YA+E+AV+++ L R Sbjct 309 YAVEAAVQRIVALHGGR 325 >gi|226360420|ref|YP_002778198.1| hypothetical protein ROP_10060 [Rhodococcus opacus B4] gi|226238905|dbj|BAH49253.1| putative DNA polymerase III delta subunit [Rhodococcus opacus B4] Length=325 Score = 382 bits (982), Expect = 3e-104, Method: Compositional matrix adjust. Identities = 199/314 (64%), Positives = 249/314 (80%), Gaps = 5/314 (1%) Query 1 LHLVLGDEELLVERAVADVL---RSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFA 57 LHLVLGDEE LVERAVA V+ R++ A A++PV+R+RAGD GA ELAELLSPSLFA Sbjct 10 LHLVLGDEEFLVERAVAQVVGQVRASANVAAGAELPVNRLRAGDAGAAELAELLSPSLFA 69 Query 58 EERIVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHP 117 E+R+VVL AAAEAGKDA A++ AA D P G VLVV+HSGGGRAK++ L +GA VHP Sbjct 70 EDRVVVLEAAAEAGKDAVALVLDAAGDPPPGVVLVVLHSGGGRAKAMTGALEKLGAVVHP 129 Query 118 CARITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVD 177 CA++ K E FIR EF +L V+V + V ++ + VGS++RELA+ACSQL ADTGG +D Sbjct 130 CAKL-KSGELIGFIRGEFRTLGVRVSPDVVQSVFEGVGSNLRELAAACSQLTADTGGKID 188 Query 178 AAAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIG 237 AAV+RY+SGKAEV GFD+ADKAVAGD AGA EALRWAM+RG P V+LADALA+AVH+I Sbjct 189 VAAVQRYYSGKAEVSGFDVADKAVAGDTAGAIEALRWAMLRGVPHVLLADALADAVHSIA 248 Query 238 RVGPQS-GDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADA 296 RV P GDP+R+A++LGMPPW+++KAQ A+ W+ +V A+R+VA LNA+VKGA ADA Sbjct 249 RVAPAGRGDPFRMASELGMPPWKIKKAQALAKGWTPTSVGEALRIVAALNADVKGAAADA 308 Query 297 DYALESAVRQVAEL 310 DYA+ESAV +V+ L Sbjct 309 DYAVESAVGRVSRL 322 >gi|111018296|ref|YP_701268.1| DNA polymerase III delta subunit [Rhodococcus jostii RHA1] gi|110817826|gb|ABG93110.1| possible DNA polymerase III delta subunit [Rhodococcus jostii RHA1] Length=535 Score = 382 bits (981), Expect = 4e-104, Method: Compositional matrix adjust. Identities = 201/314 (65%), Positives = 247/314 (79%), Gaps = 5/314 (1%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTA---DVPVSRMRAGDVGAYELAELLSPSLFA 57 LHLVLGDEE LVERAVA V+ R A A D+PV+R+RAGD GA ELAELLSPSLFA Sbjct 220 LHLVLGDEEFLVERAVAQVISHVRANADVAAGADLPVNRLRAGDAGAAELAELLSPSLFA 279 Query 58 EERIVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHP 117 E+R+VVL AAAEAGKDA A+I AA D P G VLVV+HSGGGRAK++ L +GA VHP Sbjct 280 EDRVVVLEAAAEAGKDAVALILDAAGDPPPGVVLVVLHSGGGRAKAMTGALEKLGAVVHP 339 Query 118 CARITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVD 177 CA++ K + FIR EF +L V+V E V ++ + VGS++RELA+ACSQL ADTGG +D Sbjct 340 CAKL-KSGDLIGFIRGEFRTLGVRVSPEVVQSVFEGVGSNLRELAAACSQLTADTGGKID 398 Query 178 AAAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIG 237 AAV+RY+SGKAEV GFD+ADKAVAGD AGA EALRWAM+RG P V+LADALA+AVH+I Sbjct 399 VAAVQRYYSGKAEVSGFDVADKAVAGDTAGAIEALRWAMLRGVPHVLLADALADAVHSIA 458 Query 238 RVGPQS-GDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADA 296 RV P GDP+R+A++LGMPPW+++KAQ A+ W+ +V A+R+VA LNA+VKGA ADA Sbjct 459 RVAPAGRGDPFRMASELGMPPWKIKKAQALAKGWTPTSVGEALRIVASLNADVKGAAADA 518 Query 297 DYALESAVRQVAEL 310 DYA+ESAV +V+ L Sbjct 519 DYAVESAVGRVSRL 532 >gi|54023361|ref|YP_117603.1| hypothetical protein nfa13940 [Nocardia farcinica IFM 10152] gi|54014869|dbj|BAD56239.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=321 Score = 364 bits (935), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 191/312 (62%), Positives = 245/312 (79%), Gaps = 2/312 (0%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTAD-VPVSRMRAGDVGAYELAELLSPSLFAEE 59 +HLVLG+EELL+ERAVA ++ R A + VPV R+RAGD ELAELLSPSLFAE+ Sbjct 8 VHLVLGEEELLIERAVAAIVGDVRAVAPDPEAVPVDRLRAGDASTAELAELLSPSLFAED 67 Query 60 RIVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCA 119 R++VL +AAEAGKDA VI +AAAD P G VLVV+HSGGGRAK++A L+ GA VH CA Sbjct 68 RVIVLESAAEAGKDAVGVITTAAADPPEGVVLVVLHSGGGRAKAMAPALQKAGAVVHNCA 127 Query 120 RITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAA 179 ++TK +ER +F+R+EF + V+V E V +L+AVGSD+RELA+ACSQLVADTGG VD A Sbjct 128 KLTKAAERVEFVRAEFRAAGVRVSGEVVQTVLEAVGSDLRELAAACSQLVADTGGKVDVA 187 Query 180 AVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRV 239 AVRRY+SG+AEV GF++A+ AVAGD A EALRWA+ RG P V+LADALA++VHTI RV Sbjct 188 AVRRYYSGRAEVTGFEVAELAVAGDRGAAVEALRWAIDRGVPHVLLADALADSVHTIARV 247 Query 240 GPQS-GDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADY 298 G GDP++LA QLGMPPW+V+KAQ QAR W+ T+ +A+++VA LNA+VKG AD+ + Sbjct 248 GSAGRGDPFKLAQQLGMPPWKVKKAQAQARGWTPATIGSALQVVATLNADVKGGAADSGF 307 Query 299 ALESAVRQVAEL 310 ALE A+ ++ +L Sbjct 308 ALELALGRILDL 319 >gi|333918816|ref|YP_004492397.1| DNA-directed DNA polymerase III subunit delta [Amycolicicoccus subflavus DQS3-9A1] gi|333481037|gb|AEF39597.1| DNA-directed DNA polymerase III delta subunit [Amycolicicoccus subflavus DQS3-9A1] Length=324 Score = 357 bits (917), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 189/311 (61%), Positives = 232/311 (75%), Gaps = 2/311 (0%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 60 LHL+LGDEE L+ER V VL + R +G +D+ VSR+RAGD+G +LAELLSPSLF E+R Sbjct 13 LHLLLGDEEFLIERGVGSVLSAVRAASGDSDIQVSRVRAGDLGTAQLAELLSPSLFGEDR 72 Query 61 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR 120 +VVL +A EAGKDA A++ AADLP+G LVV+HSGGGRAK+LA+ L+ GA+VH C + Sbjct 73 VVVLESAHEAGKDAVALVRDIAADLPSGVTLVVIHSGGGRAKTLASDLQKRGAEVHKCLK 132 Query 121 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA 180 + +ERA+F+RSEF S V+ + + AL++AVGS+VRELASACSQL ADTGG VDAAA Sbjct 133 LN-ATERAEFVRSEFRSHGVRASPDVIAALVEAVGSNVRELASACSQLAADTGGRVDAAA 191 Query 181 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRVG 240 V RY+SG+AEV GFD+A+KAV G A A EALRWA G P VVLADAL E V I RV Sbjct 192 VARYYSGRAEVSGFDVAEKAVTGSRAAALEALRWAHHSGVPHVVLADALGETVRAIARVS 251 Query 241 PQS-GDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADYA 299 GDP RLA QLGMPPW+V+K Q QAR W+ DT+ A+ +VA LN +VKG AD YA Sbjct 252 AAGRGDPNRLAPQLGMPPWKVRKTQAQARNWNPDTLGRALGIVARLNGDVKGGAADTSYA 311 Query 300 LESAVRQVAEL 310 LE AV VA+L Sbjct 312 LERAVIGVADL 322 >gi|226307256|ref|YP_002767216.1| DNA polymerase III delta subunit [Rhodococcus erythropolis PR4] gi|229493143|ref|ZP_04386935.1| DNA polymerase III, delta subunit [Rhodococcus erythropolis SK121] gi|226186373|dbj|BAH34477.1| putative DNA polymerase III delta subunit [Rhodococcus erythropolis PR4] gi|229319874|gb|EEN85703.1| DNA polymerase III, delta subunit [Rhodococcus erythropolis SK121] Length=325 Score = 348 bits (893), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 178/314 (57%), Positives = 236/314 (76%), Gaps = 5/314 (1%) Query 1 LHLVLGDEELLVERAVADVLRSAR--QRAGTADVPVSRMRAGDVGAYELAELLSPSLFAE 58 LHLVLGD+E L++R V+ ++R+ R + G +D+PV++MRAGD A ELAELLSPSLFAE Sbjct 10 LHLVLGDDEFLIDRTVSQLIRAVRGDRGQGISDLPVTKMRAGDTNAPELAELLSPSLFAE 69 Query 59 ERIVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPC 118 +R++VL +AAEAGKDA A++ AA + G VL+VVHSGGGRAK+LA L +GA VH C Sbjct 70 DRVIVLESAAEAGKDAVALVLEAAREPAEGVVLIVVHSGGGRAKALAPALEKLGATVHNC 129 Query 119 ARITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDA 178 ++ K S+ DF+R EF + V+V + + A++++VGS++RELASACSQL ADTGG +D Sbjct 130 GKLNK-SQLVDFVRGEFRTADVRVAPDAIAAMIESVGSNLRELASACSQLAADTGGKIDV 188 Query 179 AAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGR 238 AV +Y+SGKAEV GFD+ADK + GD GA EALRWA G V+LADALA+AVHTI + Sbjct 189 DAVHKYYSGKAEVSGFDVADKVIVGDTRGALEALRWADQIGTAHVLLADALADAVHTIAK 248 Query 239 VGP--QSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADA 296 VGP + GDP+RLA+ LGMPPW+V+KA K+ W ++ AM++VA LNA+VKGA D+ Sbjct 249 VGPFARGGDPFRLASDLGMPPWKVKKAIKEVGGWDPTSIGAAMQIVAALNADVKGAAVDS 308 Query 297 DYALESAVRQVAEL 310 +ALE AVR+V L Sbjct 309 SFALEMAVRKVCAL 322 >gi|339295309|gb|AEJ47420.1| hypothetical protein CCDC5079_2230 [Mycobacterium tuberculosis CCDC5079] Length=170 Score = 332 bits (851), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 169/170 (99%), Positives = 170/170 (100%), Gaps = 0/170 (0%) Query 147 VTALLDAVGSDVRELASACSQLVADTGGAVDAAAVRRYHSGKAEVRGFDIADKAVAGDVA 206 +TALLDAVGSDVRELASACSQLVADTGGAVDAAAVRRYHSGKAEVRGFDIADKAVAGDVA Sbjct 1 MTALLDAVGSDVRELASACSQLVADTGGAVDAAAVRRYHSGKAEVRGFDIADKAVAGDVA 60 Query 207 GAAEALRWAMMRGEPLVVLADALAEAVHTIGRVGPQSGDPYRLAAQLGMPPWRVQKAQKQ 266 GAAEALRWAMMRGEPLVVLADALAEAVHTIGRVGPQSGDPYRLAAQLGMPPWRVQKAQKQ Sbjct 61 GAAEALRWAMMRGEPLVVLADALAEAVHTIGRVGPQSGDPYRLAAQLGMPPWRVQKAQKQ 120 Query 267 ARRWSRDTVATAMRLVAELNANVKGAVADADYALESAVRQVAELVADRGR 316 ARRWSRDTVATAMRLVAELNANVKGAVADADYALESAVRQVAELVADRGR Sbjct 121 ARRWSRDTVATAMRLVAELNANVKGAVADADYALESAVRQVAELVADRGR 170 >gi|300788523|ref|YP_003768814.1| DNA polymerase III subunit delta [Amycolatopsis mediterranei U32] gi|299798037|gb|ADJ48412.1| DNA polymerase III subunit delta [Amycolatopsis mediterranei U32] gi|340530128|gb|AEK45333.1| hypothetical protein RAM_34300 [Amycolatopsis mediterranei S699] Length=326 Score = 311 bits (798), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 175/318 (56%), Positives = 227/318 (72%), Gaps = 6/318 (1%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 60 L LVLG+EELL+ERAV + L +AR TA++ +R+R D+ A ELAEL+SPSLF+E R Sbjct 11 LQLVLGEEELLIERAVRETLAAARVMDATAEL--TRVRVSDLTAPELAELVSPSLFSEGR 68 Query 61 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAK---SLANQLRSMGAQVHP 117 ++VL +A + ++ A + + D G VLVVVH+GGGR+K SL L+ GA++ Sbjct 69 VIVLESAQDISQELADAVAAYLKDPADGVVLVVVHTGGGRSKAGKSLPTALKKAGAEITE 128 Query 118 CARITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVD 177 C R+TK +ER F+R E + K+D V ALLDAVGSD+REL+SA +QLVADTGG VD Sbjct 129 CPRLTKPAEREQFVRHEVRRVGGKIDPAGVAALLDAVGSDLRELSSAATQLVADTGGTVD 188 Query 178 AAAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIG 237 A AVRRYH G+A+V GF +A+KAV+GD A A E+LRWAM G P V++ADALA+AV TI Sbjct 189 ADAVRRYHRGRADVTGFAVAEKAVSGDRAAALESLRWAMQLGVPHVLVADALADAVRTIA 248 Query 238 RV-GPQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADA 296 RV G G+P +LA +LGMPPW+++KAQ Q+R W+ D +ATAMR+VA LNA VKG AD Sbjct 249 RVSGAGRGNPNQLAGELGMPPWKIRKAQGQSRGWNPDGLATAMRVVARLNAEVKGVAADP 308 Query 297 DYALESAVRQVAELVADR 314 YALE AV +VA DR Sbjct 309 GYALERAVLEVAAAKGDR 326 >gi|343926802|ref|ZP_08766295.1| DNA polymerase III delta subunit [Gordonia alkanivorans NBRC 16433] gi|343763162|dbj|GAA13221.1| DNA polymerase III delta subunit [Gordonia alkanivorans NBRC 16433] Length=322 Score = 311 bits (797), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 169/314 (54%), Positives = 226/314 (72%), Gaps = 2/314 (0%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 60 LHL+LGD++ L R ++ V + + AGT VPV+R+RAGDV +ELAELLSPSLFAEER Sbjct 5 LHLLLGDDDFLTGRVISAVAEATSKEAGTP-VPVTRVRAGDVSEHELAELLSPSLFAEER 63 Query 61 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR 120 IVV+ +AAEAGK+ AA+I + A LP G L+V+HSGGGRAKS+ L+ GA H Sbjct 64 IVVVESAAEAGKEPAALIATTATSLPEGITLMVIHSGGGRAKSMVPALKKAGAVEHATTA 123 Query 121 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA 180 S+R F+R+EF SL VKV + V ++++VGS++RELA+AC+QLVADTGG V+ + Sbjct 124 PKWASDRMTFVRNEFRSLGVKVSADVVEQVVESVGSELRELAAACAQLVADTGGKVNRES 183 Query 181 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRVG 240 V+ Y+ G++EV GF++ADKAV GD AGA E+L WA+ G P V+LADALAEAVH I R+ Sbjct 184 VQLYYQGRSEVTGFEVADKAVLGDRAGALESLAWALHHGVPRVLLADALAEAVHAIARIR 243 Query 241 PQ-SGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADYA 299 P S D + A++LGMPP RV+ Q +A+ W +++A A+ +VA+LN +VKG ADADYA Sbjct 244 PMGSIDHFAAASELGMPPNRVKSVQAKAKAWDSESIARAVGVVAKLNGDVKGQAADADYA 303 Query 300 LESAVRQVAELVAD 313 L AV VA+L D Sbjct 304 LTYAVAAVADLRPD 317 >gi|326381589|ref|ZP_08203283.1| hypothetical protein SCNU_01520 [Gordonia neofelifaecis NRRL B-59395] gi|326199836|gb|EGD57016.1| hypothetical protein SCNU_01520 [Gordonia neofelifaecis NRRL B-59395] Length=297 Score = 306 bits (784), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 166/292 (57%), Positives = 208/292 (72%), Gaps = 1/292 (0%) Query 20 LRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEERIVVLGAAAEAGKDAAAVIE 79 + + R R ADVPV+R+RAG+V E+AELLSPSLFAEERIVV+ +AA+AGK+ AA+I Sbjct 1 MTAERSRDAGADVPVTRVRAGEVTGPEMAELLSPSLFAEERIVVVQSAADAGKEPAALIT 60 Query 80 SAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCARITKVSERADFIRSEFASLR 139 + A LP G L+VVH+GGGR K++ +L+ GAQ CA SERADF+RSEF +L Sbjct 61 ATAKSLPEGITLMVVHTGGGRQKAMVGELKKAGAQEFACAAPKWPSERADFVRSEFRALG 120 Query 140 VKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAAVRRYHSGKAEVRGFDIADK 199 KV E V + + VGSD+REL++AC QLVADTG VDA AVR Y++G+ EV GF++ADK Sbjct 121 AKVSAEVVELVTEMVGSDLRELSAACRQLVADTGNKVDADAVRLYYTGRPEVTGFEVADK 180 Query 200 AVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRVGPQSG-DPYRLAAQLGMPPW 258 AV GD+AGA E+L WA G V+LADALAEAVH I RV G D Y LA++LGMPP Sbjct 181 AVTGDLAGALESLAWAEHHGTARVLLADALAEAVHAIARVRSMGGADKYTLASELGMPPG 240 Query 259 RVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADYALESAVRQVAEL 310 RV K Q QAR W ++ A+ +VA+LN +VKG AD DYALE AV VA+L Sbjct 241 RVGKIQTQARAWDSTSIGEALLVVAKLNGDVKGQAADPDYALEHAVSTVAQL 292 >gi|319949559|ref|ZP_08023606.1| DNA polymerase III delta subunit [Dietzia cinnamea P4] gi|319436777|gb|EFV91850.1| DNA polymerase III delta subunit [Dietzia cinnamea P4] Length=324 Score = 303 bits (775), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 169/312 (55%), Positives = 211/312 (68%), Gaps = 2/312 (0%) Query 1 LHLVLGDEELLVERAVADVLRSAR--QRAGTADVPVSRMRAGDVGAYELAELLSPSLFAE 58 LHLVLG++E L ERA V+ + R AG VSR+ +V A +L ELLSPSLF E Sbjct 10 LHLVLGEDEFLTERATTGVVSAVRAATPAGQDPPVVSRLGGPEVTAPQLFELLSPSLFGE 69 Query 59 ERIVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPC 118 RIVV+ AAE GKDA A + AA DLP TVLVV H+GGGRAK+L LR GA+ H Sbjct 70 ARIVVVTGAAELGKDAQAAVLDAARDLPPETVLVVQHTGGGRAKALVADLRRAGAEEHAA 129 Query 119 ARITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDA 178 ++T+ + F+RSEF L V+V E AL++AVG+D+R+LASAC QLVADTGG VD Sbjct 130 GKLTRHMDVVGFVRSEFRGLNVRVAPEACEALVEAVGTDLRQLASACGQLVADTGGKVDV 189 Query 179 AAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGR 238 AVRRYHSG V GF +A++AV GDVAGA EAL WA+ G P VVLADALA+AV++I Sbjct 190 EAVRRYHSGVVGVSGFTVAERAVTGDVAGAIEALEWALHTGVPEVVLADALADAVNSIAL 249 Query 239 VGPQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADY 298 VG Q G P A+ G+PPW+V+K Q R WS +T+ +A+++VA LN VKG + Y Sbjct 250 VGTQRGVPPAELAKQGLPPWKVKKVTAQTRYWSIETLGSALQVVARLNGEVKGRAENPYY 309 Query 299 ALESAVRQVAEL 310 ALE AVR+V L Sbjct 310 ALERAVREVGSL 321 >gi|134098024|ref|YP_001103685.1| hypothetical protein SACE_1438 [Saccharopolyspora erythraea NRRL 2338] gi|291007211|ref|ZP_06565184.1| hypothetical protein SeryN2_22042 [Saccharopolyspora erythraea NRRL 2338] gi|133910647|emb|CAM00760.1| DNA polymerase III delta subunit [Saccharopolyspora erythraea NRRL 2338] Length=326 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 176/318 (56%), Positives = 222/318 (70%), Gaps = 6/318 (1%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 60 LHL+LG+EELLVERA+ + +AR A++ R++ ++ EL E+LSPSLFAE R Sbjct 11 LHLILGEEELLVERALWAAVGAARAADPEAEL--RRVKVSELTPPELDEMLSPSLFAEGR 68 Query 61 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGR---AKSLANQLRSMGAQVHP 117 +V L AA EAGK+ A + S A G +LVVVHSGGGR AK L N LR +GA+V Sbjct 69 VVALEAAQEAGKEIAEAVLSYARQPAEGVILVVVHSGGGRGKNAKELPNALRKLGARVTE 128 Query 118 CARITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVD 177 C +ITK +ER F+R E K+D V+AL++ VGSD+REL+SA SQLVADTGG VD Sbjct 129 CNKITKPAEREAFVRDEVRRAGGKIDASGVSALIETVGSDLRELSSAASQLVADTGGKVD 188 Query 178 AAAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIG 237 AAVRRYH G+AEV GF +A+KAV GD GA E+LRWA+ G P V++ADALA+AV TIG Sbjct 189 DAAVRRYHRGRAEVTGFVVAEKAVTGDRTGALESLRWALQLGVPHVLIADALADAVRTIG 248 Query 238 RVGPQS-GDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADA 296 RV DP+RLA +LGMP W+V+KA Q+R WS T+A A+++ A LNA VKG ADA Sbjct 249 RVAAAGRSDPFRLAGELGMPAWKVKKALAQSRGWSSATIADALQVAAALNAEVKGMAADA 308 Query 297 DYALESAVRQVAELVADR 314 DYALE AV +V +L A R Sbjct 309 DYALERAVLRVVDLRAAR 326 >gi|296140495|ref|YP_003647738.1| DNA polymerase III subunit delta [Tsukamurella paurometabola DSM 20162] gi|296028629|gb|ADG79399.1| DNA polymerase III delta [Tsukamurella paurometabola DSM 20162] Length=301 Score = 298 bits (763), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 163/281 (59%), Positives = 204/281 (73%), Gaps = 2/281 (0%) Query 32 VPVSRMRAGDVGAYELAELLSPSLFAEERIVVLGAAAEAGKDAAAVIESAAADLPAGTVL 91 VPV+R+RAGDV ELAELLSPSLFAEERIVVL +AAEAGK +I AA + P G L Sbjct 19 VPVTRLRAGDVDQSELAELLSPSLFAEERIVVLESAAEAGKAPVDLIVEAAQNPPDGITL 78 Query 92 VVVHSGGGRAKSLANQLRSMGAQVHPCARITKVSERADFIRSEFASLRVKVDDETVTALL 151 V+ HSGGGRAKS+ L+ GA + I+ +R DF +SEF + +V+V DE V L+ Sbjct 79 VIEHSGGGRAKSMVAALKKAGATMVEVPAISNARDRMDFAKSEFRAQKVRVSDELVELLV 138 Query 152 DAVGSDVRELASACSQLVADTGGAVDAAAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEA 211 D+VG D+RELA+A +QLVADTGG VD AAV RY++G+AEV GF+IADKAVAG V+ A EA Sbjct 139 DSVGKDLRELAAAIAQLVADTGGRVDLAAVNRYYAGRAEVTGFEIADKAVAGQVSAAMEA 198 Query 212 LRWAMMRGEPLVVLADALAEAVHTIGRVG--PQSGDPYRLAAQLGMPPWRVQKAQKQARR 269 LRWA RG P V++ADALA+AVH++ R+ ++ D YR A +LGM PW+V+K + ARR Sbjct 199 LRWAQHRGTPHVLIADALADAVHSVARIRGLGRTPDQYRDAGELGMAPWKVKKMTQVARR 258 Query 270 WSRDTVATAMRLVAELNANVKGAVADADYALESAVRQVAEL 310 W + VA A+ VA NA+VKG AD DYALE AVR+VA L Sbjct 259 WRAENVAQALDAVANANADVKGQAADPDYALELAVRRVATL 299 >gi|302528889|ref|ZP_07281231.1| DNA polymerase III, delta subunit [Streptomyces sp. AA4] gi|302437784|gb|EFL09600.1| DNA polymerase III, delta subunit [Streptomyces sp. AA4] Length=323 Score = 297 bits (761), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 173/321 (54%), Positives = 223/321 (70%), Gaps = 12/321 (3%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 60 LHLV G+EELL+ERAV L +AR TAD+ +R R D+ LAEL+SPSLFAE R Sbjct 8 LHLVTGEEELLIERAVRASLDAARAADPTADL--TRTRVSDLTPPALAELVSPSLFAEGR 65 Query 61 IVVLGAAAEAGK---DAAAVIESAAADLPAGTVLVVVHSGGGR---AKSLANQLRSMGAQ 114 ++VL +A + + DA A AD G VLVVVHSGGGR AK+L L+ GA+ Sbjct 66 VIVLESAQDISQELSDAVLAYVKAPAD---GIVLVVVHSGGGRSKAAKALPGALKKAGAE 122 Query 115 VHPCARITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGG 174 + C ++TK +ER F+R+E K+D + ALLD+VGSD+REL+SA +QLVADTGG Sbjct 123 ITECPKLTKPAEREAFVRNEVRRAGGKIDGAGLMALLDSVGSDLRELSSAATQLVADTGG 182 Query 175 AVDAAAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVH 234 VD AVRRYH+G+A+V GF +A+KAVAGD A A E+L+WAM G P V++ADALA+AV Sbjct 183 VVDEQAVRRYHTGRADVTGFAVAEKAVAGDRAAAMESLQWAMQLGVPHVLVADALADAVR 242 Query 235 TIGRVGPQS-GDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAV 293 TI RV G+P ++A +LGMPPW+++KAQ Q+R W +D +ATAMR+VA LNA VKGA Sbjct 243 TIARVSAAGRGNPNQMAGELGMPPWKIRKAQGQSRGWGQDGLATAMRVVARLNAEVKGAA 302 Query 294 ADADYALESAVRQVAELVADR 314 ADA+YAL+ AV V DR Sbjct 303 ADANYALQRAVLDVVAAKGDR 323 >gi|262203076|ref|YP_003274284.1| DNA polymerase III subunit delta [Gordonia bronchialis DSM 43247] gi|262086423|gb|ACY22391.1| DNA polymerase III delta [Gordonia bronchialis DSM 43247] Length=324 Score = 294 bits (752), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 174/311 (56%), Positives = 224/311 (73%), Gaps = 2/311 (0%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 60 LHL+LGD++ L R ++ V AGT VPV+R+RAGDV +ELAELLSPSLFAEER Sbjct 8 LHLLLGDDDFLTGRVISAVSAEQSGLAGTP-VPVTRVRAGDVSEHELAELLSPSLFAEER 66 Query 61 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR 120 IVV+ +AAEAGK+ AA+I AAA LP G L+VVH+GGGRAKS+ L+ GA H A Sbjct 67 IVVVESAAEAGKEPAALIAQAAASLPDGITLMVVHTGGGRAKSMVPALKKAGAVEHATAA 126 Query 121 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA 180 SER DF+R EF SL VKV E V +++ VGS++RELA+AC+QLVADT G VD A Sbjct 127 PRWPSERMDFVRQEFRSLGVKVSPEVVEQVVEGVGSELRELAAACAQLVADTDGKVDRDA 186 Query 181 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRVG 240 VR Y+ G+ E+ GF++AD+AV G+ A A E+L WA+ G P V+LADALAEAVH I R+ Sbjct 187 VRLYYQGRPEITGFEVADRAVTGNRAAALESLAWALHHGVPHVLLADALAEAVHRIARIR 246 Query 241 PQ-SGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADYA 299 P +G+ + LA++LGMPP RV+ Q QAR W +++A A+++VA LN VKG ADAD+A Sbjct 247 PMGTGNHFALASELGMPPRRVKDVQAQARAWDSESIAKAVQVVATLNGEVKGQAADADFA 306 Query 300 LESAVRQVAEL 310 L SAV +VA+L Sbjct 307 LTSAVARVADL 317 >gi|317507849|ref|ZP_07965550.1| DNA polymerase III [Segniliparus rugosus ATCC BAA-974] gi|316253891|gb|EFV13260.1| DNA polymerase III [Segniliparus rugosus ATCC BAA-974] Length=333 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 174/329 (53%), Positives = 213/329 (65%), Gaps = 15/329 (4%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTAD----VP-VSRMRAGDVGAYELAELLSPSL 55 LHLVLGDE LLVERAV VLR A R +D P VSR+RAGD A LAEL S SL Sbjct 5 LHLVLGDEPLLVERAVGAVLRGANARDEFSDNAVAAPAVSRLRAGDATAALLAELTSASL 64 Query 56 FAEERIVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQV 115 F E R++VL A +AG + A I A + LVV HSG R + L N LR +GAQV Sbjct 65 FDEHRVLVLDEAQQAGAEPCARILDLAREREESVTLVVCHSGAARNRPLVNALRELGAQV 124 Query 116 HPCARITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGA 175 H CA++T+ +R DF+R+EF S V+V ALL++VGSD+RELA ACSQL +DTGG Sbjct 125 HDCAKLTRAGDRLDFVRAEFRSHDVRVPPAAAQALLESVGSDLRELARACSQLASDTGGV 184 Query 176 VDAAAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHT 235 V+ AVRRY GKAEV GFDIAD A++G+ GA A RWA+ G V++ADALAE+ + Sbjct 185 VNVDAVRRYFQGKAEVTGFDIADLALSGEAEGALTAARWALASGVAPVLIADALAESALS 244 Query 236 IGRVGPQS-GDPYRLAAQLGMPPWRVQKAQKQARRWS---------RDTVATAMRLVAEL 285 + RVG P LA+ LGMPPWRV+K Q Q R WS V A+RLVAEL Sbjct 245 LARVGAAGRASPEALASSLGMPPWRVKKTQAQWRVWSAGGKAEQSALGRVDRALRLVAEL 304 Query 286 NANVKGAVADADYALESAVRQVAELVADR 314 NA+VKGA AD ++A+ESAVR++ L DR Sbjct 305 NADVKGAAADVEFAVESAVRELTGLARDR 333 >gi|331695853|ref|YP_004332092.1| DNA polymerase III subunit delta [Pseudonocardia dioxanivorans CB1190] gi|326950542|gb|AEA24239.1| DNA polymerase III, delta subunit [Pseudonocardia dioxanivorans CB1190] Length=342 Score = 291 bits (744), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 170/308 (56%), Positives = 213/308 (70%), Gaps = 3/308 (0%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 60 ++LV+G+EELL ERAV +V+ R RA + V R+R +V A ELAE LSPSLFAE R Sbjct 30 VNLVIGEEELLAERAVQEVV--VRARAADPETEVRRLRTSEVDAQELAEHLSPSLFAEGR 87 Query 61 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR 120 +VVL AA EAGKD A + AA+ G VLV+ H GG R KS A+ LR GA V C R Sbjct 88 VVVLSAAQEAGKDMVAAVLRYAAEPADGIVLVLQHQGGARGKSFADDLRKAGAAVTRCER 147 Query 121 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA 180 +T+ +ERADF+R+E L K+ + V LL+AVGS++RELASA QLVADTGG VD A Sbjct 148 LTRPAERADFVRAEVRRLGGKITGDAVDVLLEAVGSELRELASAAGQLVADTGGVVDEKA 207 Query 181 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRVG 240 VRRYH G+AE GF +ADK VAGD GA EALRWA++ G V++ADALA+AV T+ +VG Sbjct 208 VRRYHRGRAEATGFTVADKVVAGDREGALEALRWALVLGVAPVLVADALADAVRTLAKVG 267 Query 241 PQS-GDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADYA 299 GDP RLA LGMPPW+++KAQ Q R W + + A AE NA+VKGA AD ++A Sbjct 268 AAGRGDPNRLAGTLGMPPWKIRKAQGQVRSWRPEGLTVAFAAAAEANADVKGAAADPEFA 327 Query 300 LESAVRQV 307 LE AVR++ Sbjct 328 LERAVRRI 335 >gi|257055306|ref|YP_003133138.1| hypothetical protein Svir_12630 [Saccharomonospora viridis DSM 43017] gi|256585178|gb|ACU96311.1| DNA polymerase III, delta subunit [Saccharomonospora viridis DSM 43017] Length=326 Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 165/313 (53%), Positives = 217/313 (70%), Gaps = 6/313 (1%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 60 L+LVLG+EELLVERAV + + +AR TA+ +R+R ++ + AEL+SPSLF+E R Sbjct 11 LYLVLGEEELLVERAVREAVDTARLADPTAEA--TRVRVSELTPAQFAELVSPSLFSEGR 68 Query 61 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGR---AKSLANQLRSMGAQVHP 117 +VVL AA E ++ A + S + G LVVVHSGGGR AKSL + LR GA V Sbjct 69 VVVLDAAQEISQENADAVLSYVSAPADGITLVVVHSGGGRSKAAKSLPSALRKAGAVVTE 128 Query 118 CARITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVD 177 C ++TK +ER F+R+E ++D V AL+DAVG+D+RELASA +QLVAD+GG+VD Sbjct 129 CPKVTKPAEREAFVRNEVRRAGGRIDAPAVAALIDAVGTDLRELASAATQLVADSGGSVD 188 Query 178 AAAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIG 237 AVRRYH G+A+V GF +A+KAVAGD A A E+LRWA G V+LADALA+AV TI Sbjct 189 EEAVRRYHRGRADVTGFQVAEKAVAGDRAAALESLRWAQQIGVAHVLLADALADAVRTIA 248 Query 238 RVGPQS-GDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADA 296 +V G+P +A +LGMPPW+++KAQ QAR WS +A AMR+VA +NA VKGA A+ Sbjct 249 KVSAAGRGNPNHMAGELGMPPWKIRKAQSQARGWSSSGLAEAMRVVARVNAEVKGAAANP 308 Query 297 DYALESAVRQVAE 309 +YALE AV + E Sbjct 309 EYALERAVLDIVE 321 >gi|256375344|ref|YP_003099004.1| hypothetical protein Amir_1206 [Actinosynnema mirum DSM 43827] gi|255919647|gb|ACU35158.1| DNA polymerase III, delta subunit [Actinosynnema mirum DSM 43827] Length=322 Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 169/311 (55%), Positives = 213/311 (69%), Gaps = 6/311 (1%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 60 + LV+GDEELLVERAV L +AR+ AD+ +R+R D+ ELAEL+SPSLFAE R Sbjct 5 VQLVIGDEELLVERAVRAALVAAREADPQADL--TRVRVSDLTPPELAELVSPSLFAEGR 62 Query 61 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGR---AKSLANQLRSMGAQVHP 117 ++ L AA EA K+ A + S G LVVVH+GGGR AK L LR GA+V Sbjct 63 VIALEAAQEASKEIADAVVSYVKAPADGVTLVVVHTGGGRSKAAKELPAVLRKAGAEVTE 122 Query 118 CARITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVD 177 C +IT+ ER F+R+E + K D + AL++AVGSD+RELA+A SQ+VADT G +D Sbjct 123 CPKITRAPEREAFVRNEIRAAGGKADPAAIGALIEAVGSDLRELAAAASQMVADTDGKID 182 Query 178 AAAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIG 237 AVRRYH G+AEV GF +ADKAV GD AGA EALRWA+ G P V++ADALA+AV T+ Sbjct 183 EEAVRRYHRGRAEVTGFAVADKAVVGDRAGALEALRWALQLGVPHVLVADALADAVRTVA 242 Query 238 RVGPQS-GDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADA 296 RV GDP++LA +LGMPPW+++KAQ Q R W D +A AM +VA+LNA VKG ADA Sbjct 243 RVSAVGRGDPFKLAGELGMPPWKIKKAQGQVRGWDGDGLARAMTVVADLNAEVKGMAADA 302 Query 297 DYALESAVRQV 307 YALE AV + Sbjct 303 GYALERAVLNI 313 >gi|296392904|ref|YP_003657788.1| DNA polymerase III delta [Segniliparus rotundus DSM 44985] gi|296180051|gb|ADG96957.1| DNA polymerase III delta [Segniliparus rotundus DSM 44985] Length=333 Score = 275 bits (702), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 171/325 (53%), Positives = 209/325 (65%), Gaps = 15/325 (4%) Query 1 LHLVLGDEELLVERAVADVLRSARQR-----AGTADVPVSRMRAGDVGAYELAELLSPSL 55 LHLVLGDE LLVERAVA VLR AR G A +SR+RAGD A LAEL S SL Sbjct 5 LHLVLGDEPLLVERAVASVLREARAHDGFVGGGVAAPVISRLRAGDATADLLAELTSASL 64 Query 56 FAEERIVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQV 115 FAE+R++VL A +AG D A I A + +VV HSG R + L N LR +GAQ Sbjct 65 FAEQRVLVLEEAQQAGADPCARILDLAREQDESVTVVVCHSGAARNRPLVNSLRELGAQT 124 Query 116 HPCARITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGA 175 H CA++T+ +R DF+R+EF V+V ALL++VGSD+RELA ACSQL +DTGG Sbjct 125 HACAKLTRAGDRLDFVRAEFREHGVRVPPAAAQALLESVGSDLRELARACSQLASDTGGV 184 Query 176 VDAAAVRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHT 235 V+ AVR+Y GKAEV GFDIAD A+ G+ AGA A RWA+ G V++ADALAE+ + Sbjct 185 VNVEAVRQYFQGKAEVSGFDIADLALGGETAGALAAARWALTSGVAPVLIADALAESALS 244 Query 236 IGRVGPQS-GDPYRLAAQLGMPPWRVQKAQKQARRWSRD---------TVATAMRLVAEL 285 + RV P LA+ LGMPPWR +K Q R WS V A+RLVAEL Sbjct 245 LARVAAAGRASPEALASSLGMPPWRAKKTQGHWRIWSSGGNDEQSALRRVDRALRLVAEL 304 Query 286 NANVKGAVADADYALESAVRQVAEL 310 NA+VKGA AD D+A+ESAVRQ+A L Sbjct 305 NADVKGAAADIDFAVESAVRQIAGL 329 >gi|339295310|gb|AEJ47421.1| hypothetical protein CCDC5079_2231 [Mycobacterium tuberculosis CCDC5079] Length=152 Score = 272 bits (696), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 140/141 (99%), Positives = 141/141 (100%), Gaps = 0/141 (0%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 60 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER Sbjct 7 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 66 Query 61 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR 120 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR Sbjct 67 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR 126 Query 121 ITKVSERADFIRSEFASLRVK 141 ITKVSERADFIRSEFASLRV+ Sbjct 127 ITKVSERADFIRSEFASLRVR 147 >gi|258651779|ref|YP_003200935.1| DNA polymerase III subunit delta [Nakamurella multipartita DSM 44233] gi|258555004|gb|ACV77946.1| DNA polymerase III, delta subunit [Nakamurella multipartita DSM 44233] Length=329 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 154/317 (49%), Positives = 207/317 (66%), Gaps = 6/317 (1%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 60 L L+ GDE+LLV+RA++ +AR+ A+ VG E ++L++PSLFAE R Sbjct 17 LVLLTGDEQLLVDRAISRATAAARRIEAGAERRDGVAAGLTVG--EFSDLVAPSLFAEPR 74 Query 61 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR 120 +VV+ A EAGKD AA + D G LVV H+GG R K++ L GA V C + Sbjct 75 VVVIRGAHEAGKDLAAALIGYTKDPVEGVWLVVQHAGGARNKAIGEALTKAGATVVTCNK 134 Query 121 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA 180 IT+++ER DF+R+E + VTAL++AVGSD+RELA+A QLVADTGG VD A Sbjct 135 ITRLNERIDFVRAEIRRAGGTTNPAAVTALVEAVGSDLRELAAAADQLVADTGGTVDEQA 194 Query 181 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRV- 239 VRRYH G+AEV GF ++D ++GD+AGA E+LRWA+ G V++ADALA+ V T+ +V Sbjct 195 VRRYHRGRAEVTGFTVSDATMSGDLAGALESLRWALGVGVAPVLVADALADGVRTVAKVS 254 Query 240 GPQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADYA 299 G + G+ Y +A+ LGMPPW+V +A+ AR WS D + M +VAELNA VKGA D +YA Sbjct 255 GAKGGNSYAIASALGMPPWKVDRARGMARGWSTDGLVGGMAIVAELNAAVKGAAVDVEYA 314 Query 300 LESAVRQVAELVADRGR 316 LE R V +LVA R R Sbjct 315 LE---RAVIDLVAARKR 328 >gi|325000877|ref|ZP_08121989.1| hypothetical protein PseP1_19027 [Pseudonocardia sp. P1] Length=334 Score = 256 bits (654), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 153/305 (51%), Positives = 203/305 (67%), Gaps = 3/305 (0%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 60 L LV+GDEE L ERAV+D++R RQ+ A+ + R R +V ELA LSPSLFAE R Sbjct 22 LQLVVGDEEFLAERAVSDLVRRVRQQ--DAEAELRRFRTSEVAPGELAGHLSPSLFAEAR 79 Query 61 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR 120 ++VL +A KD A I D G VLVV H+GG + K++ + LR GA V C R Sbjct 80 VIVLTHGQDATKDMVAAIADYVRDPAEGIVLVVQHAGGAKGKAVLDLLRKAGAHVTTCNR 139 Query 121 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA 180 IT+ ER+DF+ +E + + + L++AVGSD+RELA+A QLV+DTGG +D A Sbjct 140 ITRADERSDFVHAEVRRNGGSITNGALAVLVEAVGSDLRELAAAAGQLVSDTGGTIDEAG 199 Query 181 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRVG 240 VRRYH G+AE GF +AD AVAGD GA EALRWA++ G P V++ADALA++V T+ +VG Sbjct 200 VRRYHRGRAESSGFAVADAAVAGDRRGALEALRWALVLGVPHVLIADALADSVRTLAKVG 259 Query 241 PQS-GDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADYA 299 GDP R+A +LGMPPW+++KAQ R+W + +A A+ AE+NA+VKG AD YA Sbjct 260 SAGRGDPNRMAGELGMPPWKIRKAQGLVRQWHPEQLAVAIAATAEVNADVKGVAADPGYA 319 Query 300 LESAV 304 LE AV Sbjct 320 LERAV 324 >gi|334563976|ref|ZP_08516967.1| DNA polymerase III, delta subunit [Corynebacterium bovis DSM 20582] Length=314 Score = 251 bits (641), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 155/315 (50%), Positives = 205/315 (66%), Gaps = 2/315 (0%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 60 ++L++G E L ER +++ +AR AG D+PV R ++ ELAELLSPSLFAE+R Sbjct 1 MNLIVGGEPFLAERRRQEIVAAARTAAGQDDLPVDRRTVSELSGPELAELLSPSLFAEDR 60 Query 61 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR 120 I+V+ +AGK+ A+IE A AD P G VL++ H+G GR KSL L GAQVH A Sbjct 61 IIVVSGLEDAGKETVALIEQAVADPPDGVVLILEHTGKGRTKSLVTSLPKKGAQVHQAAE 120 Query 121 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA 180 + K ER F+ EF V+V + A+L+AVG+D+RELASA SQLVADT G+V AA Sbjct 121 L-KGRERQGFVDGEFRRHGVRVTADVTLAVLNAVGTDLRELASAVSQLVADTDGSVTQAA 179 Query 181 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRV- 239 V RY+SGKAEV GFD+A+ AV G V A A R A+ G P V+LA AL+ V I +V Sbjct 180 VARYYSGKAEVSGFDVAELAVRGQVNAAVGAARRALQLGVPNVLLASALSGMVGDIAKVQ 239 Query 240 GPQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADYA 299 G + R AA+ GMPPW++ K AR W+ VA A+++VAEL+A VKG ADA+YA Sbjct 240 GAGRINAQRQAAEYGMPPWKLDKTVGIARGWTPAAVARAVQVVAELDAGVKGHSADAEYA 299 Query 300 LESAVRQVAELVADR 314 +E AVR++A+L R Sbjct 300 VEHAVREIAQLAGPR 314 >gi|172041037|ref|YP_001800751.1| DNA polymerase III, delta subunit [Corynebacterium urealyticum DSM 7109] gi|171852341|emb|CAQ05317.1| DNA polymerase III, delta subunit [Corynebacterium urealyticum DSM 7109] Length=334 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 141/315 (45%), Positives = 201/315 (64%), Gaps = 2/315 (0%) Query 1 LHLVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEER 60 +++++G EE L ER ++ +AR+ AG D+PV +A ++ +L ELLSPSLFAE+R Sbjct 21 VNMIVGAEEFLAERQRFAIVHAARKNAGNPDLPVELHKATNLSEPQLIELLSPSLFAEDR 80 Query 61 IVVLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCAR 120 IVV+ A+ GK+ A+++SA G VL+++HSG GR K L N+ + +G ++ P A Sbjct 81 IVVISGVADCGKETVALLKSAIESPADGVVLILLHSGKGRNKRLVNEWQKLGVRIFP-AE 139 Query 121 ITKVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAA 180 + ER F+ EF S V V E V +LD+VGSD+RELASA SQLVADT V A Sbjct 140 PLRPRERRSFVEQEFRSYGVSVGPEVVDRMLDSVGSDLRELASAVSQLVADTDANVTPDA 199 Query 181 VRRYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRV- 239 V+RY+ G+AEV GFDIAD +AG A A R A+ G PLV++A AL+ A+ + RV Sbjct 200 VQRYYQGQAEVTGFDIADLVLAGRQGEAVAAARRAIQLGVPLVLIASALSTAMRDVARVA 259 Query 240 GPQSGDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADYA 299 G DP R A+ GM PW+++K + AR+W V+ ++LVA+L+A VKG + +YA Sbjct 260 GAGRIDPRRDASAFGMAPWKLEKTLRVARQWPPAAVSRGVQLVAQLDAGVKGQLPAPEYA 319 Query 300 LESAVRQVAELVADR 314 +E VRQ+A L+A R Sbjct 320 VEDTVRQLAGLIARR 334 >gi|238060580|ref|ZP_04605289.1| DNA polymerase III, delta subunit [Micromonospora sp. ATCC 39149] gi|237882391|gb|EEP71219.1| DNA polymerase III, delta subunit [Micromonospora sp. ATCC 39149] Length=326 Score = 242 bits (618), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 147/307 (48%), Positives = 192/307 (63%), Gaps = 3/307 (0%) Query 3 LVLGDEELLVERAVADVLRSARQRAGTADVPVSRMRAGDVGAYELAELLSPSLFAEERIV 62 LVLGDEELL RAV + + AR RA V V +AG + E+AE+LSPSLF R++ Sbjct 14 LVLGDEELLATRAVTEAV--ARVRAVDPGVDVREYQAGALTVGEIAEMLSPSLFGGRRVL 71 Query 63 VLGAAAEAGKDAAAVIESAAADLPAGTVLVVVHSGGGRAKSLANQLRSMGAQVHPCARIT 122 VL A +A KD A + + A + LVV+H G + K+ A+ LR+ GA V P A++ Sbjct 72 VLRAGQDARKDLVAALLAYAKNPDPEVHLVVLHLGAAKGKAFADGLRAAGATVVPAAKLK 131 Query 123 KVSERADFIRSEFASLRVKVDDETVTALLDAVGSDVRELASACSQLVADTGGAVDAAAVR 182 ER F+R E + K D+ AL+ AVG+D+RELA+ACSQLVADT G +DA V Sbjct 132 GHRERVAFVRDEVRRVGGKCTDDAAEALIAAVGTDLRELAAACSQLVADTDGRIDADTVA 191 Query 183 RYHSGKAEVRGFDIADKAVAGDVAGAAEALRWAMMRGEPLVVLADALAEAVHTIGRVGPQ 242 RY+ G+ EV GF +AD + GDV A EALRWA+ G V +ADALA+ V T+ RV Sbjct 192 RYYKGRVEVSGFTVADATMVGDVPAALEALRWALHVGVDPVPIADALADGVRTVARVAAA 251 Query 243 S-GDPYRLAAQLGMPPWRVQKAQKQARRWSRDTVATAMRLVAELNANVKGAVADADYALE 301 GDPY+LA+ LGMP W+++ AQ++AR W+ + + AMR AE NA VKG D YALE Sbjct 252 GRGDPYQLASTLGMPAWKIKSAQQRARGWTPEGLVRAMRAAAECNAAVKGGSDDRAYALE 311 Query 302 SAVRQVA 308 AV VA Sbjct 312 RAVFSVA 318 Lambda K H 0.317 0.130 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 549222890922 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40