BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2417c Length=280 Score E Sequences producing significant alignments: (Bits) Value gi|15609554|ref|NP_216933.1| hypothetical protein Rv2417c [Mycob... 535 2e-150 gi|253798505|ref|YP_003031506.1| hypothetical protein TBMG_01557... 530 9e-149 gi|240170829|ref|ZP_04749488.1| hypothetical protein MkanA1_1606... 370 1e-100 gi|118618956|ref|YP_907288.1| hypothetical protein MUL_3689 [Myc... 369 2e-100 gi|183983725|ref|YP_001852016.1| hypothetical protein MMAR_3745 ... 358 3e-97 gi|254819852|ref|ZP_05224853.1| hypothetical protein MintA_08004... 357 1e-96 gi|296170514|ref|ZP_06852100.1| DegV family EDD domain protein [... 329 3e-88 gi|41408338|ref|NP_961174.1| hypothetical protein MAP2240c [Myco... 327 1e-87 gi|118464386|ref|YP_880979.1| DegV family protein [Mycobacterium... 326 2e-87 gi|333990131|ref|YP_004522745.1| hypothetical protein JDM601_149... 325 6e-87 gi|342857821|ref|ZP_08714477.1| DegV family protein [Mycobacteri... 323 2e-86 gi|108800492|ref|YP_640689.1| degV family protein [Mycobacterium... 318 4e-85 gi|126436108|ref|YP_001071799.1| degV family protein [Mycobacter... 318 5e-85 gi|120404876|ref|YP_954705.1| degV family protein [Mycobacterium... 284 9e-75 gi|145223244|ref|YP_001133922.1| degV family protein [Mycobacter... 280 3e-73 gi|169628715|ref|YP_001702364.1| hypothetical protein MAB_1625 [... 245 6e-63 gi|118472441|ref|YP_888846.1| DegV family protein [Mycobacterium... 236 3e-60 gi|226360429|ref|YP_002778207.1| hypothetical protein ROP_10150 ... 211 1e-52 gi|262203080|ref|YP_003274288.1| degV family protein [Gordonia b... 211 1e-52 gi|343926808|ref|ZP_08766301.1| hypothetical protein GOALK_072_0... 204 1e-50 gi|333918813|ref|YP_004492394.1| hypothetical protein AS9A_1142 ... 203 2e-50 gi|326381584|ref|ZP_08203278.1| degV family protein [Gordonia ne... 202 4e-50 gi|111018303|ref|YP_701275.1| hypothetical protein RHA1_ro01293 ... 201 9e-50 gi|256375339|ref|YP_003098999.1| degV family protein [Actinosynn... 199 3e-49 gi|134098020|ref|YP_001103681.1| hypothetical protein SACE_1434 ... 199 3e-49 gi|312140323|ref|YP_004007659.1| degv family protein [Rhodococcu... 197 2e-48 gi|229493182|ref|ZP_04386974.1| DegV family protein [Rhodococcus... 197 2e-48 gi|226307259|ref|YP_002767219.1| hypothetical protein RER_37720 ... 196 3e-48 gi|325677101|ref|ZP_08156770.1| DegV family EDD domain protein [... 196 4e-48 gi|284990145|ref|YP_003408699.1| degV family protein [Geodermato... 179 5e-43 gi|257055302|ref|YP_003133134.1| degV family protein [Saccharomo... 166 4e-39 gi|302528895|ref|ZP_07281237.1| conserved hypothetical protein [... 163 2e-38 gi|54023347|ref|YP_117589.1| hypothetical protein nfa13800 [Noca... 163 3e-38 gi|330469618|ref|YP_004407361.1| degV family protein [Verrucosis... 159 3e-37 gi|238060583|ref|ZP_04605292.1| degV family protein [Micromonosp... 159 3e-37 gi|254774570|ref|ZP_05216086.1| DegV family protein [Mycobacteri... 158 8e-37 gi|300788528|ref|YP_003768819.1| DegV family protein [Amycolatop... 157 1e-36 gi|302869319|ref|YP_003837956.1| degV family protein [Micromonos... 157 2e-36 gi|290960415|ref|YP_003491597.1| hypothetical protein SCAB_60381... 156 3e-36 gi|315504206|ref|YP_004083093.1| degv family protein [Micromonos... 156 3e-36 gi|159039380|ref|YP_001538633.1| degV family protein [Salinispor... 155 6e-36 gi|84495879|ref|ZP_00994733.1| hypothetical protein JNB_00130 [J... 152 5e-35 gi|117927980|ref|YP_872531.1| DegV family protein [Acidothermus ... 152 6e-35 gi|163840681|ref|YP_001625086.1| DegV family protein [Renibacter... 152 7e-35 gi|331695850|ref|YP_004332089.1| degV family protein [Pseudonoca... 151 9e-35 gi|269837930|ref|YP_003320158.1| degV family protein [Sphaerobac... 150 2e-34 gi|29832033|ref|NP_826667.1| hypothetical protein SAV_5490 [Stre... 150 3e-34 gi|21221028|ref|NP_626807.1| hypothetical protein SCO2569 [Strep... 149 3e-34 gi|320010874|gb|ADW05724.1| degV family protein [Streptomyces fl... 149 5e-34 gi|291302918|ref|YP_003514196.1| degV family protein [Stackebran... 148 8e-34 >gi|15609554|ref|NP_216933.1| hypothetical protein Rv2417c [Mycobacterium tuberculosis H37Rv] gi|15841936|ref|NP_336973.1| hypothetical protein MT2490 [Mycobacterium tuberculosis CDC1551] gi|31793596|ref|NP_856089.1| hypothetical protein Mb2440c [Mycobacterium bovis AF2122/97] 63 more sequence titles Length=280 Score = 535 bits (1379), Expect = 2e-150, Method: Compositional matrix adjust. Identities = 279/280 (99%), Positives = 280/280 (100%), Gaps = 0/280 (0%) Query 1 VTVVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDIHKRHATTAGATP 60 +TVVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDIHKRHATTAGATP Sbjct 1 MTVVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDIHKRHATTAGATP 60 Query 61 VELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVGF 120 VELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVGF Sbjct 61 VELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVGF 120 Query 121 AALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTALAL 180 AALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTALAL Sbjct 121 AALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTALAL 180 Query 181 KPLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAAAL 240 KPLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAAAL Sbjct 181 KPLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAAAL 240 Query 241 AERLPACEPAMVTAMGPVLALHVGAGAVGVCVDVGASPPA 280 AERLPACEPAMVTAMGPVLALHVGAGAVGVCVDVGASPPA Sbjct 241 AERLPACEPAMVTAMGPVLALHVGAGAVGVCVDVGASPPA 280 >gi|253798505|ref|YP_003031506.1| hypothetical protein TBMG_01557 [Mycobacterium tuberculosis KZN 1435] gi|294994474|ref|ZP_06800165.1| degV family protein [Mycobacterium tuberculosis 210] gi|297732014|ref|ZP_06961132.1| degV family protein [Mycobacterium tuberculosis KZN R506] 16 more sequence titles Length=277 Score = 530 bits (1365), Expect = 9e-149, Method: Compositional matrix adjust. Identities = 276/277 (99%), Positives = 277/277 (100%), Gaps = 0/277 (0%) Query 4 VVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDIHKRHATTAGATPVEL 63 +VVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDIHKRHATTAGATPVEL Sbjct 1 MVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDIHKRHATTAGATPVEL 60 Query 64 SAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVGFAAL 123 SAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVGFAAL Sbjct 61 SAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVGFAAL 120 Query 124 AAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTALALKPL 183 AAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTALALKPL Sbjct 121 AAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTALALKPL 180 Query 184 LSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAAALAER 243 LSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAAALAER Sbjct 181 LSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAAALAER 240 Query 244 LPACEPAMVTAMGPVLALHVGAGAVGVCVDVGASPPA 280 LPACEPAMVTAMGPVLALHVGAGAVGVCVDVGASPPA Sbjct 241 LPACEPAMVTAMGPVLALHVGAGAVGVCVDVGASPPA 277 >gi|240170829|ref|ZP_04749488.1| hypothetical protein MkanA1_16067 [Mycobacterium kansasii ATCC 12478] Length=276 Score = 370 bits (950), Expect = 1e-100, Method: Compositional matrix adjust. Identities = 208/274 (76%), Positives = 234/274 (86%), Gaps = 0/274 (0%) Query 1 VTVVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDIHKRHATTAGATP 60 ++VVVVTDTS RLPADLR+ W+IR+VPLHILLDG DLRDGVDEIP DI++RHATTA ATP Sbjct 1 MSVVVVTDTSARLPADLRDTWAIREVPLHILLDGADLRDGVDEIPADIYQRHATTAAATP 60 Query 61 VELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVGF 120 EL AAY++ALADS GDGVVAVHISS LSGT RAAELTAA LGPAVRVIDS+SAAMG GF Sbjct 61 AELDAAYRQALADSDGDGVVAVHISSGLSGTCRAAELTAAGLGPAVRVIDSKSAAMGTGF 120 Query 121 AALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTALAL 180 LAA RAAAAG++LD VARAA AV R AF+ V RLDNLRRSGRI GAKAWLGTALAL Sbjct 121 TVLAAARAAAAGNDLDAVARAAQEAVRRTQAFIVVHRLDNLRRSGRIGGAKAWLGTALAL 180 Query 181 KPLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAAAL 240 KP+L +DDGKLVL QRVRTV +A A MIDRVC++VG+ PAA+AVHHVA+ A +VAA L Sbjct 181 KPILRIDDGKLVLAQRVRTVKHAMAAMIDRVCEVVGEGPAAVAVHHVANSGGAGEVAAEL 240 Query 241 AERLPACEPAMVTAMGPVLALHVGAGAVGVCVDV 274 A RLPA EPA+VT +GPVLA+HVGAGAV VC+ V Sbjct 241 ARRLPAGEPAIVTDLGPVLAVHVGAGAVAVCLHV 274 >gi|118618956|ref|YP_907288.1| hypothetical protein MUL_3689 [Mycobacterium ulcerans Agy99] gi|118571066|gb|ABL05817.1| conserved protein [Mycobacterium ulcerans Agy99] Length=281 Score = 369 bits (948), Expect = 2e-100, Method: Compositional matrix adjust. Identities = 207/275 (76%), Positives = 233/275 (85%), Gaps = 0/275 (0%) Query 3 VVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDIHKRHATTAGATPVE 62 VVVVTDTS RLP D+RE+W+IR+V LHILLDG+DLRDGVDE+PDDIHK HATTA ATPVE Sbjct 3 VVVVTDTSARLPVDIRERWAIREVALHILLDGVDLRDGVDEVPDDIHKCHATTAAATPVE 62 Query 63 LSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVGFAA 122 L AAY+ ALADS GDGVVAVHIS+ LSGT+RAA+L AA+LGP VRVIDS+SAAMG GF A Sbjct 63 LRAAYRAALADSAGDGVVAVHISAGLSGTYRAAKLAAADLGPEVRVIDSKSAAMGTGFVA 122 Query 123 LAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTALALKP 182 LAA RAAAAG++L++V RAA A VSR HAFV V RLDNLRRSGRI GAKAWLGTALALKP Sbjct 123 LAAARAAAAGEDLESVGRAADATVSRTHAFVVVHRLDNLRRSGRIGGAKAWLGTALALKP 182 Query 183 LLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAAALAE 242 LL V+DGKLVL QRVRTV +A A ++DRVC++ G PA LAVHHVA+ AN VA L Sbjct 183 LLRVEDGKLVLAQRVRTVKHAMAALVDRVCEVDGREPALLAVHHVANVEGANSVAVELGR 242 Query 243 RLPACEPAMVTAMGPVLALHVGAGAVGVCVDVGAS 277 RLPACEPA+VT +GPVLALHVGA AV VCV VGA+ Sbjct 243 RLPACEPALVTPLGPVLALHVGAEAVAVCVQVGAA 277 >gi|183983725|ref|YP_001852016.1| hypothetical protein MMAR_3745 [Mycobacterium marinum M] gi|183177051|gb|ACC42161.1| conserved protein [Mycobacterium marinum M] Length=281 Score = 358 bits (920), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 208/275 (76%), Positives = 234/275 (86%), Gaps = 0/275 (0%) Query 3 VVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDIHKRHATTAGATPVE 62 VVVVTDTS RLPAD+RE+W+IR+VPLHILLDG+DLRDGVDE+PDDIHK HATTA ATP E Sbjct 3 VVVVTDTSARLPADIRERWAIREVPLHILLDGVDLRDGVDEVPDDIHKCHATTAAATPAE 62 Query 63 LSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVGFAA 122 L AAY+ ALADS GDGVVAVHIS+ LSGT+RAA+L AA+LGP VRVIDS+SAAMG GF A Sbjct 63 LRAAYRAALADSAGDGVVAVHISAGLSGTYRAAKLAAADLGPEVRVIDSKSAAMGTGFVA 122 Query 123 LAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTALALKP 182 LAA RAAAAG++L++V RAA A SR HAFV V RLDNLRRSGRI GAKAWLGTALALKP Sbjct 123 LAAARAAAAGEDLESVGRAADATASRTHAFVVVHRLDNLRRSGRIGGAKAWLGTALALKP 182 Query 183 LLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAAALAE 242 LL V+DGKLVL QRVRTV +A A ++DRVC++VG PA LAVHHVA+ AN VA L Sbjct 183 LLRVEDGKLVLAQRVRTVKHAMAALVDRVCEVVGREPALLAVHHVANVEGANSVAVELGR 242 Query 243 RLPACEPAMVTAMGPVLALHVGAGAVGVCVDVGAS 277 RLPACEPA+VT +GPVLALHVGA AV VCV VGA+ Sbjct 243 RLPACEPALVTPLGPVLALHVGAEAVAVCVQVGAA 277 >gi|254819852|ref|ZP_05224853.1| hypothetical protein MintA_08004 [Mycobacterium intracellulare ATCC 13950] Length=274 Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 204/269 (76%), Positives = 226/269 (85%), Gaps = 0/269 (0%) Query 4 VVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDIHKRHATTAGATPVEL 63 +VVTD+S RLPADL ++W IR VPLHILLDG DLRDGVD+IP DIHK ATTA ATP EL Sbjct 1 MVVTDSSARLPADLLDKWGIRVVPLHILLDGTDLRDGVDDIPGDIHKLAATTAAATPAEL 60 Query 64 SAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVGFAAL 123 + AYQ+ALADSG DGVVAVHISSALSGT RAAE TAA+L P VRVIDS+SAAMG GF AL Sbjct 61 ADAYQQALADSGADGVVAVHISSALSGTCRAAERTAADLDPNVRVIDSKSAAMGTGFVAL 120 Query 124 AAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTALALKPL 183 AA RAAA G +L+TVA AA AV+R HAF+ V RLDNLRRSGRI GAKAWLGTALALKPL Sbjct 121 AAARAAATGGDLNTVADAAREAVARGHAFIVVHRLDNLRRSGRIGGAKAWLGTALALKPL 180 Query 184 LSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAAALAER 243 L +DDGKLVL QRVRT+S+AT MIDRVCQ+VGD AALAVHHV +P A +VA AL +R Sbjct 181 LRIDDGKLVLAQRVRTISHATEAMIDRVCQVVGDGTAALAVHHVNNPDGATEVATALGKR 240 Query 244 LPACEPAMVTAMGPVLALHVGAGAVGVCV 272 LPACEPA+VT +GPVLALHVGAGAV V V Sbjct 241 LPACEPAIVTELGPVLALHVGAGAVAVSV 269 >gi|296170514|ref|ZP_06852100.1| DegV family EDD domain protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894826|gb|EFG74549.1| DegV family EDD domain protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=277 Score = 329 bits (843), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 196/262 (75%), Positives = 220/262 (84%), Gaps = 0/262 (0%) Query 1 VTVVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDIHKRHATTAGATP 60 +TVVVVTD S RLPADL ++W+IR VPLHILLDG DLRDGVDEIP+D+++RHATTA ATP Sbjct 1 MTVVVVTDASARLPADLLQKWAIRVVPLHILLDGADLRDGVDEIPEDVYQRHATTAAATP 60 Query 61 VELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVGF 120 EL+ AYQ+AL DSGGDGVVAVHIS+ALSGT AAE TAA+L P VRV+DSRS AMG GF Sbjct 61 AELANAYQQALVDSGGDGVVAVHISAALSGTCGAAERTAADLDPHVRVVDSRSTAMGTGF 120 Query 121 AALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTALAL 180 ALAA RAAA G +LD VA AA AA HAF+ V RLDNLRRSGRI GAKAWLGTALAL Sbjct 121 IALAAARAAAGGGDLDAVADAARAAARHSHAFMVVHRLDNLRRSGRIGGAKAWLGTALAL 180 Query 181 KPLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAAAL 240 KPLL +DDGKLVL QRVRTV++AT MIDRVC+ GDRPAALAVHHVA+P A +VAA L Sbjct 181 KPLLRIDDGKLVLAQRVRTVTHATEAMIDRVCEAAGDRPAALAVHHVANPDGAKEVAATL 240 Query 241 AERLPACEPAMVTAMGPVLALH 262 A RLPACEPA++T +GPVLALH Sbjct 241 ARRLPACEPAIITPLGPVLALH 262 >gi|41408338|ref|NP_961174.1| hypothetical protein MAP2240c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396694|gb|AAS04557.1| hypothetical protein MAP_2240c [Mycobacterium avium subsp. paratuberculosis K-10] gi|336458224|gb|EGO37205.1| EDD domain protein, DegV family [Mycobacterium avium subsp. paratuberculosis S397] Length=277 Score = 327 bits (838), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 196/262 (75%), Positives = 218/262 (84%), Gaps = 0/262 (0%) Query 1 VTVVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDIHKRHATTAGATP 60 + VVVVTD+S RLPADL QW IR VPLHILLDG DLRDGVDE+P DIH+R ATTA ATP Sbjct 1 MAVVVVTDSSARLPADLLGQWGIRVVPLHILLDGTDLRDGVDEVPADIHQRAATTAAATP 60 Query 61 VELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVGF 120 EL+ AYQ+ALADSGGDGVVAVHISSALSGT RAAE TAA+L P +RV+DS+SAAMG GF Sbjct 61 AELADAYQQALADSGGDGVVAVHISSALSGTCRAAERTAADLDPNLRVVDSKSAAMGTGF 120 Query 121 AALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTALAL 180 ALAA RAAAAG +LD VA AA AAVSR H F+ V RLDNLRRSGRI G AWLGTALAL Sbjct 121 VALAAARAAAAGAQLDAVADAARAAVSRGHGFIVVHRLDNLRRSGRIGGPAAWLGTALAL 180 Query 181 KPLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAAAL 240 KPLL +DDGKLVL QRVRT +AT MIDRVCQ++GD AALAVHHV +P A +VAAAL Sbjct 181 KPLLRIDDGKLVLAQRVRTAGHATEAMIDRVCQVIGDGAAALAVHHVDNPGGAAEVAAAL 240 Query 241 AERLPACEPAMVTAMGPVLALH 262 ERLPAC+PA++T +GPVLALH Sbjct 241 GERLPACDPAIITELGPVLALH 262 >gi|118464386|ref|YP_880979.1| DegV family protein [Mycobacterium avium 104] gi|118165673|gb|ABK66570.1| DegV family protein [Mycobacterium avium 104] Length=277 Score = 326 bits (836), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 196/262 (75%), Positives = 218/262 (84%), Gaps = 0/262 (0%) Query 1 VTVVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDIHKRHATTAGATP 60 + VVVVTD+S RLPADL QW IR VPLHILLDG DLRDGVDE+P DIH+R ATTA ATP Sbjct 1 MAVVVVTDSSARLPADLLGQWGIRVVPLHILLDGTDLRDGVDEVPADIHQRAATTAAATP 60 Query 61 VELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVGF 120 EL+ AYQ+ALADSGGDGVVAVHISSALSGT RAAE TAA+L P +RV+DS+SAAMG GF Sbjct 61 AELADAYQQALADSGGDGVVAVHISSALSGTCRAAERTAADLDPNLRVVDSKSAAMGTGF 120 Query 121 AALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTALAL 180 ALAA RAAAAG +LD VA AA AAVSR H F+ V RLDNLRRSGRI G AWLGTALAL Sbjct 121 VALAAARAAAAGAQLDAVADAARAAVSRGHGFIVVHRLDNLRRSGRIGGPAAWLGTALAL 180 Query 181 KPLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAAAL 240 KPLL +DDGKLVL QRVRT +AT MIDRVCQ+VG+ AALAVHHV +P A +VAAAL Sbjct 181 KPLLRIDDGKLVLAQRVRTAGHATEAMIDRVCQVVGEGAAALAVHHVDNPGGAAEVAAAL 240 Query 241 AERLPACEPAMVTAMGPVLALH 262 ERLPAC+PA++T +GPVLALH Sbjct 241 GERLPACDPAIITELGPVLALH 262 >gi|333990131|ref|YP_004522745.1| hypothetical protein JDM601_1491 [Mycobacterium sp. JDM601] gi|333486099|gb|AEF35491.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=283 Score = 325 bits (832), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 192/275 (70%), Positives = 222/275 (81%), Gaps = 2/275 (0%) Query 1 VTVVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDIHKRHA-TTAGAT 59 +TV V+TD+S LP +LR++W IR VPLHILLDG DLRDG+DE+P+DI+ R +TAG Sbjct 1 MTVTVITDSSACLPVELRDRWGIRVVPLHILLDGADLRDGIDEVPEDIYARDGVSTAGTN 60 Query 60 PVELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVG 119 P EL+ AY+ ALADSGGDGVVAVHIS+ALSGTF AAE A + VRV+DSRSAAMG G Sbjct 61 PEELTDAYRAALADSGGDGVVAVHISAALSGTFGAAEHVATQFS-GVRVVDSRSAAMGTG 119 Query 120 FAALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTALA 179 FAALAA RAAA G ++D V AA AAV R HA++ V RLDNLRRSGRI A AWLGTAL+ Sbjct 120 FAALAAARAAAGGADIDAVVAAADAAVLRSHAYLVVHRLDNLRRSGRIGSAAAWLGTALS 179 Query 180 LKPLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAAA 239 LKPLL+VDDGKLVL QR+RTV A A MIDRVC++VGDRPAALAVHHVA+P A +VA A Sbjct 180 LKPLLAVDDGKLVLAQRIRTVGKAVASMIDRVCEVVGDRPAALAVHHVANPEGAREVADA 239 Query 240 LAERLPACEPAMVTAMGPVLALHVGAGAVGVCVDV 274 LAERLPAC PA++T +G LALHVGAGAV VCVDV Sbjct 240 LAERLPACAPALITGLGSTLALHVGAGAVAVCVDV 274 >gi|342857821|ref|ZP_08714477.1| DegV family protein [Mycobacterium colombiense CECT 3035] gi|342135154|gb|EGT88320.1| DegV family protein [Mycobacterium colombiense CECT 3035] Length=277 Score = 323 bits (828), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 203/274 (75%), Positives = 229/274 (84%), Gaps = 0/274 (0%) Query 1 VTVVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDIHKRHATTAGATP 60 ++VVVVTD+S RLPADL E+W IR VPLHILLDG DLRDGVD+IP DI+K ATTA ATP Sbjct 1 MSVVVVTDSSARLPADLLEKWGIRVVPLHILLDGNDLRDGVDDIPADIYKLTATTAAATP 60 Query 61 VELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVGF 120 EL+ YQ+AL DSG DGVVAVH+SSALSGT RAAE TAA+L P VRV+DS+SAAMG GF Sbjct 61 AELADVYQQALVDSGSDGVVAVHLSSALSGTCRAAERTAADLDPNVRVVDSKSAAMGTGF 120 Query 121 AALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTALAL 180 ALAA RAAA G ++D VA AA AAV R HAF+ V RLDNLRRSGRI GAKAWLGTALAL Sbjct 121 VALAAARAAADGKDVDAVADAARAAVDRGHAFIVVHRLDNLRRSGRIGGAKAWLGTALAL 180 Query 181 KPLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAAAL 240 KPLL +DDGKLVL QRVRTVS+AT MIDRVCQ+VG+ AALAVHHVA+P A +VA AL Sbjct 181 KPLLRIDDGKLVLAQRVRTVSHATEAMIDRVCQVVGNDAAALAVHHVANPDGAQEVATAL 240 Query 241 AERLPACEPAMVTAMGPVLALHVGAGAVGVCVDV 274 ERLPACEPA++T +GPVLALHVGAGAV V V++ Sbjct 241 GERLPACEPAIITELGPVLALHVGAGAVAVSVEL 274 >gi|108800492|ref|YP_640689.1| degV family protein [Mycobacterium sp. MCS] gi|119869631|ref|YP_939583.1| degV family protein [Mycobacterium sp. KMS] gi|108770911|gb|ABG09633.1| degV family protein [Mycobacterium sp. MCS] gi|119695720|gb|ABL92793.1| degV family protein [Mycobacterium sp. KMS] Length=278 Score = 318 bits (816), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 179/276 (65%), Positives = 211/276 (77%), Gaps = 2/276 (0%) Query 3 VVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDIHKR-HATTAGATPV 61 VVVVTD S RLP + +W+IRQVPLH+L+D DLRDGVD IP DIH+R H TTAGATP Sbjct 3 VVVVTDASSRLPVEDLRRWNIRQVPLHVLVDEHDLRDGVDVIPHDIHERAHVTTAGATPG 62 Query 62 ELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVGFA 121 EL AAY+RALADSGGDGVVAVH+S+ALS TF +A A E G AVRV++SRSAAMGVGF Sbjct 63 ELGAAYRRALADSGGDGVVAVHLSAALSSTFSSAVTAAREFGSAVRVVNSRSAAMGVGFV 122 Query 122 ALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTALALK 181 A AA R AAAG +LDTV A +AV R AF+ V RLDNLRRSGRI +WLGTAL+LK Sbjct 123 ATAAARCAAAGGDLDTVESVARSAVPRGSAFIVVHRLDNLRRSGRIGATSSWLGTALSLK 182 Query 182 PLLSVD-DGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAAAL 240 PLL +D DG+L L QR+RT S A A ++++V + VGDR AA+AVHHV + AA+ + AAL Sbjct 183 PLLRIDVDGRLELAQRIRTASKAHAALVEQVVEFVGDRRAAVAVHHVDNHDAADAIGAAL 242 Query 241 AERLPACEPAMVTAMGPVLALHVGAGAVGVCVDVGA 276 ERLP E VT MGPVLA+H+GAGAVGVCV + A Sbjct 243 TERLPQIETLTVTDMGPVLAIHLGAGAVGVCVSLSA 278 >gi|126436108|ref|YP_001071799.1| degV family protein [Mycobacterium sp. JLS] gi|126235908|gb|ABN99308.1| degV family protein [Mycobacterium sp. JLS] Length=278 Score = 318 bits (815), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 179/276 (65%), Positives = 211/276 (77%), Gaps = 2/276 (0%) Query 3 VVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDIHKR-HATTAGATPV 61 VVVVTD S RLP + +W+IRQVPLH+L+D DLRDGVD IP DIH+R H TTAGATP Sbjct 3 VVVVTDASSRLPVEDLRRWNIRQVPLHVLVDEHDLRDGVDVIPHDIHERAHVTTAGATPG 62 Query 62 ELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVGFA 121 EL AAY+RALADSGGDGVVAVH+S+ALS TF +A A E G AVRV++SRSAAMGVGF Sbjct 63 ELGAAYRRALADSGGDGVVAVHLSAALSSTFSSAVTAAREFGSAVRVVNSRSAAMGVGFV 122 Query 122 ALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTALALK 181 A AA R AAAG +LDTV A +AV R AF+ V RLDNLRRSGRI +WLGTAL+LK Sbjct 123 ATAAARCAAAGGDLDTVESVARSAVPRGSAFIVVHRLDNLRRSGRIGATSSWLGTALSLK 182 Query 182 PLLSVD-DGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAAAL 240 PLL +D DG+L L QR+RT S A A ++++V + VGDR AA+AVHHV + AA+ + AAL Sbjct 183 PLLRIDVDGRLELAQRIRTASKAHAALVEQVVEFVGDRRAAVAVHHVDNHDAADAIGAAL 242 Query 241 AERLPACEPAMVTAMGPVLALHVGAGAVGVCVDVGA 276 ERLP E VT MGPVLA+H+GAGAVGVCV + A Sbjct 243 TERLPQIETLTVTDMGPVLAIHLGAGAVGVCVSLSA 278 >gi|120404876|ref|YP_954705.1| degV family protein [Mycobacterium vanbaalenii PYR-1] gi|119957694|gb|ABM14699.1| degV family protein [Mycobacterium vanbaalenii PYR-1] Length=277 Score = 284 bits (727), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 151/253 (60%), Positives = 190/253 (76%), Gaps = 2/253 (0%) Query 12 RLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDIHKR-HATTAGATPVELSAAYQRA 70 RL ++R QW IR+VPLH+L+DG+DLRDG+D+IP DIH R TTAGATP EL Y++A Sbjct 12 RLQPEVRAQWDIREVPLHVLVDGVDLRDGIDDIPYDIHDRPKVTTAGATPAELVETYRQA 71 Query 71 LADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVGFAALAAGRAAA 130 LADS G GVVAVH+S+ALS T+ AA + A E GP+VRV++SRSAAMGVGF ALAA A Sbjct 72 LADSDGAGVVAVHLSAALSSTYSAATMAAREFGPSVRVVNSRSAAMGVGFIALAAADCAR 131 Query 131 AGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTALALKPLLSVD-DG 189 +G ++D V AA +A++R H F+ V RLDNLRRSGRI A +WLGTALALKPLL +D DG Sbjct 132 SGGDIDAVEAAARSALTRSHVFLVVHRLDNLRRSGRIRTAASWLGTALALKPLLRLDVDG 191 Query 190 KLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAAALAERLPACEP 249 +LVL QR+RTV A A M++RV Q+VGDR A + VHHV + AA+++ AAL RLP Sbjct 192 RLVLDQRIRTVGKAHAAMVERVAQVVGDRGADVVVHHVDNHDAADELGAALTRRLPQISS 251 Query 250 AMVTAMGPVLALH 262 V MGP+L++H Sbjct 252 LTVADMGPLLSIH 264 >gi|145223244|ref|YP_001133922.1| degV family protein [Mycobacterium gilvum PYR-GCK] gi|315443702|ref|YP_004076581.1| degV family protein [Mycobacterium sp. Spyr1] gi|145215730|gb|ABP45134.1| degV family protein [Mycobacterium gilvum PYR-GCK] gi|315262005|gb|ADT98746.1| degV family protein [Mycobacterium sp. Spyr1] Length=282 Score = 280 bits (715), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 154/253 (61%), Positives = 189/253 (75%), Gaps = 2/253 (0%) Query 12 RLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDIHKR-HATTAGATPVELSAAYQRA 70 RL + R +W IR+VPLH+L+DG+DLRDGVD+IP DIH R TTAGA+P ELS Y++A Sbjct 12 RLQPEQRRRWGIREVPLHVLVDGVDLRDGVDDIPYDIHDRPKVTTAGASPAELSEVYRQA 71 Query 71 LADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVGFAALAAGRAAA 130 LADSGGDGVVAVH+S ALS T+ AA A E GPAVRV++SRSAAMGVGF A AA R A Sbjct 72 LADSGGDGVVAVHLSGALSSTYSAAATVAREFGPAVRVVNSRSAAMGVGFIATAAARCAQ 131 Query 131 AGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTALALKPLLSVD-DG 189 AG +LDTV AA +A++ H F+ V RLDNLRRSGRI +WLGTALALKPLL +D DG Sbjct 132 AGGDLDTVEAAARSAIAGSHVFLVVHRLDNLRRSGRIRTTASWLGTALALKPLLCLDVDG 191 Query 190 KLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAAALAERLPACEP 249 +LVL QR+RT + A A M+ RV +VG+RPA L VHHV + AA+++ AAL +RLP Sbjct 192 RLVLDQRIRTATKAHAAMVTRVADVVGERPAELVVHHVDNHDAADELGAALTQRLPQLSS 251 Query 250 AMVTAMGPVLALH 262 V MGP+L++H Sbjct 252 LTVADMGPLLSVH 264 >gi|169628715|ref|YP_001702364.1| hypothetical protein MAB_1625 [Mycobacterium abscessus ATCC 19977] gi|169240682|emb|CAM61710.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=278 Score = 245 bits (625), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 147/273 (54%), Positives = 184/273 (68%), Gaps = 2/273 (0%) Query 3 VVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDIHKR-HATTAGATPV 61 VVVVTD+ RL E IR VPLH+L DLRDGVD IP ++++ ATTAGA+P Sbjct 3 VVVVTDSGARLQPQDAEMLGIRLVPLHVLTGEQDLRDGVDPIPAAVYEKGRATTAGASPA 62 Query 62 ELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVGFA 121 EL+ Y++AL DSGGDGVVAVH+S LS TF AAE A E G V V+DS+SAAMG GF Sbjct 63 ELTEVYRQALIDSGGDGVVAVHLSGRLSSTFEAAEQAARECGERVHVVDSQSAAMGSGFV 122 Query 122 ALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTALALK 181 ALAA RAAAAG +L +AA AV R + V +LD+LRRSGRIS +WLGTALALK Sbjct 123 ALAAARAAAAGADLSAAYQAARDAVGRSRCVMVVHKLDHLRRSGRISATSSWLGTALALK 182 Query 182 PLLSVD-DGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAAAL 240 P+L +D +GKLVL QRVRT + A M+D + + VG+R ++ +HHV + A V + Sbjct 183 PVLQIDEEGKLVLAQRVRTATKAIGAMVDNIVEFVGERRVSVTIHHVDNTETAEKVNELV 242 Query 241 AERLPACEPAMVTAMGPVLALHVGAGAVGVCVD 273 RL +++ MGPVLA+HVG GAVGVC + Sbjct 243 CSRLVTAHEPVISEMGPVLAVHVGPGAVGVCAE 275 >gi|118472441|ref|YP_888846.1| DegV family protein [Mycobacterium smegmatis str. MC2 155] gi|118173728|gb|ABK74624.1| DegV family protein [Mycobacterium smegmatis str. MC2 155] Length=280 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 160/259 (62%), Positives = 187/259 (73%), Gaps = 2/259 (0%) Query 3 VVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDIHKR-HATTAGATPV 61 VVVVTD+S RL L E+W IRQVPLHIL DLRDGVD +P DIH R TT+GATP Sbjct 3 VVVVTDSSSRLSRQLCERWGIRQVPLHILDGDNDLRDGVDAVPSDIHDRPKVTTSGATPT 62 Query 62 ELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVGFA 121 E++ Y+RALADSGGDGVVAVHIS+ALS T+ +A A E AVRV++SRSAAMGVGFA Sbjct 63 EIADVYRRALADSGGDGVVAVHISAALSSTYSSAASAAREFSHAVRVVNSRSAAMGVGFA 122 Query 122 ALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTALALK 181 ALAA RAA AG LD V AA AA R HAF+ V RLDNLRRSGRI A +WLGTALALK Sbjct 123 ALAAARAAGAGASLDDVEAAARAAAQRTHAFIVVHRLDNLRRSGRIGTAASWLGTALALK 182 Query 182 PLLSVD-DGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAAAL 240 PLL +D DG+LVL QR+RT S A + ++++V + GDR + VHHV +P AA ++ L Sbjct 183 PLLQLDIDGRLVLSQRIRTASKAHSALVEQVLEEAGDRLVDVVVHHVDNPEAAEEIGKQL 242 Query 241 AERLPACEPAMVTAMGPVL 259 ERLPA V MGPVL Sbjct 243 TERLPALRSLEVADMGPVL 261 >gi|226360429|ref|YP_002778207.1| hypothetical protein ROP_10150 [Rhodococcus opacus B4] gi|226238914|dbj|BAH49262.1| hypothetical protein [Rhodococcus opacus B4] Length=288 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 131/270 (49%), Positives = 167/270 (62%), Gaps = 2/270 (0%) Query 3 VVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDIHKRHATTAGATPVE 62 VVVVTD+S + + EQ+ IR VPLH+L G D R+G+DEIP+D+ TT+GA+P E Sbjct 3 VVVVTDSSASILPEHVEQYGIRVVPLHVLSGGRDFREGIDEIPEDLAG--VTTSGASPSE 60 Query 63 LSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVGFAA 122 LS AY AL S G GV+AVHIS LSGT+ A A E VR++DS+SA MG+GF Sbjct 61 LSEAYAEALESSEGAGVLAVHISRQLSGTWEAGRQAAQEFDGRVRIVDSQSAGMGLGFPV 120 Query 123 LAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTALALKP 182 L A R A AG L+T R A SR + V RLD LRR GRI A A LGTALA+KP Sbjct 121 LEAARVAQAGANLETAYRRAVDVASRGRCLIVVDRLDQLRRGGRIGTAAALLGTALAMKP 180 Query 183 LLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAAALAE 242 +L + DG+LVL ++ RT + A A M+D + G A+AVHH+ P A VA L + Sbjct 181 VLHLVDGRLVLKEKTRTSTKAMARMVDVAVEQAGLDRTAVAVHHMHAPQRAEAVAHQLKD 240 Query 243 RLPACEPAMVTAMGPVLALHVGAGAVGVCV 272 R+P +VT VL HVGAGA+G+ + Sbjct 241 RIPQVSDLVVTDFSSVLGAHVGAGAIGIVL 270 >gi|262203080|ref|YP_003274288.1| degV family protein [Gordonia bronchialis DSM 43247] gi|262086427|gb|ACY22395.1| degV family protein [Gordonia bronchialis DSM 43247] Length=286 Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 128/271 (48%), Positives = 166/271 (62%), Gaps = 1/271 (0%) Query 3 VVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDD-IHKRHATTAGATPV 61 VVVVTD+S RLP + + + IRQVPLH+ LDG D R+GVDEIP D I TT+GA P Sbjct 3 VVVVTDSSSRLPKSVADHYGIRQVPLHLSLDGADYREGVDEIPPDLITTPGVTTSGANPQ 62 Query 62 ELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVGFA 121 +L+ A+ A+A S GDGVVAVH+S LSGT+ AA L A + VRV+DSRS + VGF Sbjct 63 DLTDAFDEAIAASDGDGVVAVHMSRRLSGTWGAARLAAEKFSGLVRVVDSRSVGLAVGFT 122 Query 122 ALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTALALK 181 A+AA +AA + D V +A + + + + V +LDNLR SGRIS A LG+ALA+K Sbjct 123 AIAAAQAARTDADRDRVYESAIREAATVDSLLCVQQLDNLRNSGRISAASKMLGSALAIK 182 Query 182 PLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAAALA 241 P+L + DG L L +R RT S A M+D + R + + H P AA D+A L Sbjct 183 PILHMVDGTLALRERHRTFSKAVQKMVDGAVESAAGRAVTVGIQHCDAPEAAADLAEQLR 242 Query 242 ERLPACEPAMVTAMGPVLALHVGAGAVGVCV 272 RL + +GPVL HVG GAVGV + Sbjct 243 SRLRMVTDEITVDLGPVLGCHVGPGAVGVVI 273 >gi|343926808|ref|ZP_08766301.1| hypothetical protein GOALK_072_00300 [Gordonia alkanivorans NBRC 16433] gi|343763168|dbj|GAA13227.1| hypothetical protein GOALK_072_00300 [Gordonia alkanivorans NBRC 16433] Length=286 Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 118/271 (44%), Positives = 164/271 (61%), Gaps = 1/271 (0%) Query 3 VVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDI-HKRHATTAGATPV 61 VVVVTD+S RLP + E + IRQVPLH+ ++ D R+GVD IP+D+ TT+GA P Sbjct 3 VVVVTDSSSRLPESVTEHYGIRQVPLHVTIEDKDYREGVDYIPEDVVSTPGVTTSGANPS 62 Query 62 ELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVGFA 121 EL+ ++ AL S G GVVAVH+S LSGT+ +A L A + VR++DSRS + VGF Sbjct 63 ELTEYFESALEASEGAGVVAVHMSRKLSGTWSSARLAAEKFSGQVRIVDSRSVGLAVGFT 122 Query 122 ALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTALALK 181 A+ A +AAA G + D V +A + + + + V +LDNLR+SGRIS A G+AL++K Sbjct 123 AIGAAQAAANGADRDRVYESAIRQAATVDSLLCVQQLDNLRQSGRISAAGRLFGSALSIK 182 Query 182 PLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAAALA 241 P+L + DG L L +R RT S A M+D + G R + V H P A +V A L Sbjct 183 PILHMVDGTLQLKERHRTFSKALDKMVDAAVESAGGRAVTVGVQHCETPDVAAEVLATLR 242 Query 242 ERLPACEPAMVTAMGPVLALHVGAGAVGVCV 272 RL + +GP+L HVG G+VG+ + Sbjct 243 NRLRMVTSELTVDLGPILGSHVGPGSVGIVI 273 >gi|333918813|ref|YP_004492394.1| hypothetical protein AS9A_1142 [Amycolicicoccus subflavus DQS3-9A1] gi|333481034|gb|AEF39594.1| hypothetical protein AS9A_1142 [Amycolicicoccus subflavus DQS3-9A1] Length=280 Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 119/275 (44%), Positives = 170/275 (62%), Gaps = 6/275 (2%) Query 3 VVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDIHK-RHATTAGATPV 61 V+VVTD+S LP ++ Q+ I VPLHIL G D R+G+D IPD + + +TAGA+P+ Sbjct 3 VIVVTDSSSTLPGEITGQYGIHVVPLHILSGGHDFREGIDAIPDSVWRATGVSTAGASPL 62 Query 62 ELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVGFA 121 E+ A++ A SGGDGVV V IS LS T+ AA A E+G VRV+DS +A +G+GFA Sbjct 63 EMREAFEHAHRLSGGDGVVGVFISRQLSSTWDAARQAAQEVGR-VRVVDSAAAGLGLGFA 121 Query 122 ALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTALALK 181 AA A+ G +LDTV AA A R ++FV V +LDNLRR GRI A A GTALA+K Sbjct 122 VRAAAMEASNGSDLDTVYSAAVDAAERAYSFVYVNQLDNLRRGGRIGTAAAMFGTALAIK 181 Query 182 PLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAA----LAVHHVADPAAANDVA 237 P+L + +GKL + ++ RT S A ++D + + + +AV H+ A++V Sbjct 182 PVLQLANGKLTVREKTRTASKALVRLVDVAAEAARAKGSGGGLCVAVQHLEAEERAHEVL 241 Query 238 AALAERLPACEPAMVTAMGPVLALHVGAGAVGVCV 272 +R+P E ++V +G VL +H+G GA+ + V Sbjct 242 ERFTKRIPEVEESLVGDLGAVLGVHLGPGALSISV 276 >gi|326381584|ref|ZP_08203278.1| degV family protein [Gordonia neofelifaecis NRRL B-59395] gi|326199831|gb|EGD57011.1| degV family protein [Gordonia neofelifaecis NRRL B-59395] Length=282 Score = 202 bits (514), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 125/280 (45%), Positives = 171/280 (62%), Gaps = 2/280 (0%) Query 1 VTVVVVTDTSCRLPADLREQWSIRQVPLHILL-DGLDLRDGVDEIPDD-IHKRHATTAGA 58 ++V +VTD+S RLPA L ++ +I QVPL++ DG++ +GVD++P D I TT+GA Sbjct 1 MSVAIVTDSSSRLPATLLDEHAILQVPLYLKTEDGVEYAEGVDDVPSDVISSMKVTTSGA 60 Query 59 TPVELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGV 118 +L AY +A S GDGVVAVH+S LSGT+ AA L A E+ VRV+DSRS + + Sbjct 61 NLGDLKRAYAQAWEASEGDGVVAVHMSRRLSGTWSAARLAAEEMDGRVRVVDSRSVGISL 120 Query 119 GFAALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTAL 178 G +AA +AA AG D V A A + + + V LDNLRRSGRIS A LG+AL Sbjct 121 GLTTMAAAQAAEAGGSRDAVYETAVRAAATAESMLCVQALDNLRRSGRISAASHLLGSAL 180 Query 179 ALKPLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAA 238 A+KP+L + DG L L +R RT + A A M+D +L GD + V H +P A+ V A Sbjct 181 AIKPILHMSDGLLTLRERHRTSTKAIAKMLDAAVELAGDDAVTIGVQHCQNPELADAVLA 240 Query 239 ALAERLPACEPAMVTAMGPVLALHVGAGAVGVCVDVGASP 278 + ER+ +V +G VL +HVG GAVGV + G +P Sbjct 241 QVTERVENVTSTIVVDLGAVLGIHVGPGAVGVTLGYGLAP 280 >gi|111018303|ref|YP_701275.1| hypothetical protein RHA1_ro01293 [Rhodococcus jostii RHA1] gi|110817833|gb|ABG93117.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=288 Score = 201 bits (511), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 126/270 (47%), Positives = 167/270 (62%), Gaps = 2/270 (0%) Query 3 VVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDIHKRHATTAGATPVE 62 VVVVTD+S + +L EQ+ I VPLH+L G D R+G+D++P+D+ TT+GA+P E Sbjct 3 VVVVTDSSASILPELVEQYGIHVVPLHVLSGGQDFREGIDQLPEDLAG--VTTSGASPSE 60 Query 63 LSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVGFAA 122 LS AY AL S G GV+AVHIS LSGT+ A A E VR++DS+SA MG+G+ Sbjct 61 LSEAYATALDLSEGAGVLAVHISRQLSGTWEAGRQAAQEFDGRVRIVDSQSAGMGLGYPV 120 Query 123 LAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTALALKP 182 L A RAA G +L+T R A SR + V RLD LRR GRI A A LGTALA+KP Sbjct 121 LEAARAAKDGADLETAYRRAVDVASRGRCLIVVDRLDQLRRGGRIGTAAALLGTALAMKP 180 Query 183 LLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAAALAE 242 +L + DG+LVL ++ RT + A A M+D +L G A+AVHH+ A VA L + Sbjct 181 VLHLVDGRLVLKEKTRTSTKAMARMVDAAVELAGLDRTAVAVHHMHARQRAEAVAQHLKD 240 Query 243 RLPACEPAMVTAMGPVLALHVGAGAVGVCV 272 R+P +VT V+ HVG GA+G+ + Sbjct 241 RIPQVSDLVVTDFSSVIGAHVGVGAIGIVL 270 >gi|256375339|ref|YP_003098999.1| degV family protein [Actinosynnema mirum DSM 43827] gi|255919642|gb|ACU35153.1| degV family protein [Actinosynnema mirum DSM 43827] Length=280 Score = 199 bits (507), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 125/276 (46%), Positives = 174/276 (64%), Gaps = 10/276 (3%) Query 3 VVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDI-----HKRHATTAG 57 + +VTD++ LP +R VPLH+ ++G DGVD P ++ +R TT+ Sbjct 3 IAIVTDSTSYLPDGFAASRGVRVVPLHVSVNGRSRLDGVDFGPRELTAALGERRRVTTSR 62 Query 58 ATPVELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGP-AVRVIDSRSAAM 116 ATP EL+ Y R L D G DGV++VH+S ALSGT+ AA L AA++ P VRV+DSR+ AM Sbjct 63 ATPQELAEVY-RELLDGGADGVLSVHLSRALSGTWEAARLAAAQVDPVKVRVVDSRATAM 121 Query 117 GVGFAALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGT 176 G+GFAALAA AAAG +LD+ RAA +A R+ F V L++LRR GRI A +GT Sbjct 122 GLGFAALAA---AAAGPDLDSAERAATSAAERVKVFFCVETLEHLRRGGRIGTTAALVGT 178 Query 177 ALALKPLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDV 236 ALA+KPLL V+DG+LV +++VRT A A ++D G P +LAVHH+A P A ++ Sbjct 179 ALAVKPLLHVEDGRLVPLEKVRTAGRAAARLVDLAAAAAGSGPVSLAVHHLAAPERAVEL 238 Query 237 AAALAERLPACEPAMVTAMGPVLALHVGAGAVGVCV 272 A L ER+P +++ +G V+ H G G +G+ V Sbjct 239 ATLLDERVPGASGCLISEVGAVIGAHTGPGVLGIVV 274 >gi|134098020|ref|YP_001103681.1| hypothetical protein SACE_1434 [Saccharopolyspora erythraea NRRL 2338] gi|291007215|ref|ZP_06565188.1| hypothetical protein SeryN2_22062 [Saccharopolyspora erythraea NRRL 2338] gi|133910643|emb|CAM00756.1| hypothetical protein SACE_1434 [Saccharopolyspora erythraea NRRL 2338] Length=285 Score = 199 bits (507), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 122/278 (44%), Positives = 177/278 (64%), Gaps = 8/278 (2%) Query 1 VTVVVVTDTSCRLPADLREQWSIRQVPLHILLDGL----DLRDGVDEIPDDIHKRH-ATT 55 +++ VVTD++ LP E++++R V LH+ +DG + G E+ ++H TT Sbjct 1 MSIAVVTDSTAYLPPGYAERYAVRSVGLHVSVDGAGSVAESGFGPGELARAFDRKHRVTT 60 Query 56 AGATPVELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPA-VRVIDSRSA 114 +GATP EL+ AY+ AL D+G +GVV+VH+S LSGT+ AA L A ++ P VRV+DSRS Sbjct 61 SGATPAELAKAYRAAL-DAGAEGVVSVHLSRRLSGTWDAARLAARDVDPQRVRVVDSRST 119 Query 115 AMGVGFAALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWL 174 AMG+GF+ LAA A +G +L V +AA A R +V L+ LRR GRI A A L Sbjct 120 AMGLGFSVLAAAACAESGGDLSAVEGSAALAAERTTTLFSVQTLEYLRRGGRIGAATALL 179 Query 175 GTALALKPLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAAN 234 GTALA+KPLL V +G++ +++VRT + A +++ C+ G P A+AVHH+A P A Sbjct 180 GTALAIKPLLHVHEGRIEALEKVRTTTRAMTRLLEVACRAAGSGPVAVAVHHLAAPQRAE 239 Query 235 DVAAALAERLPACEPAMVTAMGPVLALHVGAGAVGVCV 272 +AA L ++LP E +V+ +G V+ H+G GAVGV V Sbjct 240 QLAAKLRDQLPDAE-LVVSEVGAVIGAHIGPGAVGVVV 276 >gi|312140323|ref|YP_004007659.1| degv family protein [Rhodococcus equi 103S] gi|311889662|emb|CBH48979.1| putative DegV family protein [Rhodococcus equi 103S] Length=292 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 132/260 (51%), Positives = 165/260 (64%), Gaps = 2/260 (0%) Query 3 VVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDIHKRHATTAGATPVE 62 VVVVTD+S L +L +++ IR VPLH+L G DL DGVD +PDD+ TT+GA+P E Sbjct 3 VVVVTDSSACLSPELVDRFGIRVVPLHLLSGGRDLLDGVDPVPDDLSG--VTTSGASPGE 60 Query 63 LSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVGFAA 122 L+ AY AL SGGDGVVAVHIS LSGT+ A A +LG VR++DS S MG+GF A Sbjct 61 LTDAYAAALEQSGGDGVVAVHISRGLSGTWEAGRQAAQKLGEKVRIVDSESTGMGLGFPA 120 Query 123 LAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTALALKP 182 LAA R A AG L V + A +R F+ V RL++LRR GRI A A LGTALA+KP Sbjct 121 LAAARVARAGGNLKVVYQRAVEVAARGRTFIVVDRLEHLRRGGRIGTAAALLGTALAMKP 180 Query 183 LLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAAALAE 242 +L V DGKLVL ++ RT S A A ++D G+ AA+AVHH A DV A L + Sbjct 181 VLHVVDGKLVLREKTRTSSKALAKLVDAAVMEAGEGSAAVAVHHSHAAERAEDVVAQLKD 240 Query 243 RLPACEPAMVTAMGPVLALH 262 R+P +VT +G VL H Sbjct 241 RIPDLSEVVVTEIGAVLGAH 260 >gi|229493182|ref|ZP_04386974.1| DegV family protein [Rhodococcus erythropolis SK121] gi|229319913|gb|EEN85742.1| DegV family protein [Rhodococcus erythropolis SK121] Length=280 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 124/260 (48%), Positives = 163/260 (63%), Gaps = 2/260 (0%) Query 3 VVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDIHKRHATTAGATPVE 62 VVVVTD+S +P + + I+ VPLH+L DG DLR+GVD +P D+ TTAGA+P E Sbjct 3 VVVVTDSSACIPQESADACGIQVVPLHVLRDGCDLREGVDAMPSDLSG--VTTAGASPAE 60 Query 63 LSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVGFAA 122 LS AY RAL S GDGV+AVHIS LSGT+ A + A E G AVR++DS+SA MG+G+ A Sbjct 61 LSEAYARALDMSDGDGVLAVHISRQLSGTWEAGRVAAQEFGGAVRIVDSQSAGMGLGYPA 120 Query 123 LAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTALALKP 182 L A R A G L+ A SR ++ V +LD LRR GRI A A LGTALA+KP Sbjct 121 LEAARLAEKGASLEEAYGRAVDVASRGRCYIVVDKLDQLRRGGRIGTAAALLGTALAMKP 180 Query 183 LLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAAALAE 242 +L + DGKLVL ++ RT + A A ++D + G A+AVHH+ A+ +A LAE Sbjct 181 ILHLVDGKLVLGEKTRTTTKALARLVDSAVERAGLGRVAIAVHHMRARERADGIAEQLAE 240 Query 243 RLPACEPAMVTAMGPVLALH 262 R+P ++VT V+ H Sbjct 241 RIPDVAESVVTDFSAVIGAH 260 >gi|226307259|ref|YP_002767219.1| hypothetical protein RER_37720 [Rhodococcus erythropolis PR4] gi|226186376|dbj|BAH34480.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length=280 Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 124/260 (48%), Positives = 163/260 (63%), Gaps = 2/260 (0%) Query 3 VVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDIHKRHATTAGATPVE 62 VVVVTD+S +P + + I+ VPLH+L DG DLR+GVD +P D+ TTAGA+P E Sbjct 3 VVVVTDSSACIPQESADACGIQVVPLHVLRDGCDLREGVDAMPSDLSG--VTTAGASPAE 60 Query 63 LSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVGFAA 122 LS AY RAL S GDGV+AVHIS LSGT+ A + A E G AVR++DS+SA MG+G+ A Sbjct 61 LSEAYARALDMSDGDGVLAVHISRQLSGTWEAGRVAAQEFGGAVRIVDSQSAGMGLGYPA 120 Query 123 LAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTALALKP 182 L A R A G L+ A SR ++ V +LD LRR GRI A A LGTALA+KP Sbjct 121 LEAARLAEKGASLEEAYGRAVDVASRGRCYIVVDKLDQLRRGGRIGTAAALLGTALAMKP 180 Query 183 LLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAAALAE 242 +L + DGKLVL ++ RT + A A ++D + G A+AVHH+ A+ +A LAE Sbjct 181 ILHLVDGKLVLGEKTRTTTKALARLVDSAVERAGLGRVAIAVHHMRARERADAIAEQLAE 240 Query 243 RLPACEPAMVTAMGPVLALH 262 R+P ++VT V+ H Sbjct 241 RIPDVAESVVTDFSAVIGAH 260 >gi|325677101|ref|ZP_08156770.1| DegV family EDD domain protein [Rhodococcus equi ATCC 33707] gi|325552086|gb|EGD21779.1| DegV family EDD domain protein [Rhodococcus equi ATCC 33707] Length=292 Score = 196 bits (498), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 131/260 (51%), Positives = 165/260 (64%), Gaps = 2/260 (0%) Query 3 VVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDIHKRHATTAGATPVE 62 VVVVTD+S L +L +++ IR VPLH+L G DL DGVD +P+D+ TT+GA+P E Sbjct 3 VVVVTDSSACLSPELVDRFGIRVVPLHLLSGGRDLLDGVDPVPEDLSG--VTTSGASPGE 60 Query 63 LSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVGFAA 122 L+ AY AL SGGDGVVAVHIS LSGT+ A A +LG VR++DS S MG+GF A Sbjct 61 LTDAYAAALEQSGGDGVVAVHISRGLSGTWEAGRQAAQKLGEKVRIVDSESTGMGLGFPA 120 Query 123 LAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTALALKP 182 LAA R A AG L V + A +R F+ V RL++LRR GRI A A LGTALA+KP Sbjct 121 LAAARVARAGGNLKVVYQRAVEVAARGRTFIVVDRLEHLRRGGRIGTAAALLGTALAMKP 180 Query 183 LLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAAALAE 242 +L V DGKLVL ++ RT S A A ++D G+ AA+AVHH A DV A L + Sbjct 181 VLHVVDGKLVLREKTRTSSKALAKLVDAAVMEAGEGSAAVAVHHSHAAERAEDVVAQLKD 240 Query 243 RLPACEPAMVTAMGPVLALH 262 R+P +VT +G VL H Sbjct 241 RIPDLSEVVVTEIGAVLGAH 260 >gi|284990145|ref|YP_003408699.1| degV family protein [Geodermatophilus obscurus DSM 43160] gi|284063390|gb|ADB74328.1| degV family protein [Geodermatophilus obscurus DSM 43160] Length=296 Score = 179 bits (453), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 123/275 (45%), Positives = 172/275 (63%), Gaps = 8/275 (2%) Query 3 VVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDIHK------RHATTA 56 V VVTD+S LPA L EQ+++ VPL+++L G R+G D P D+ + + +T+ Sbjct 3 VAVVTDSSAYLPARLLEQYAVEVVPLYVVLAGHSGREGDDIGPADVARALGTRGQRVSTS 62 Query 57 GATPVELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPA-VRVIDSRSAA 115 TP + AAY+R L D+G D +V+VH+S+ LSGT AA L AA++G V V+DSRSAA Sbjct 63 RPTPGDFVAAYRRRL-DAGADHIVSVHLSAELSGTVDAARLAAAQVGEHIVTVVDSRSAA 121 Query 116 MGVGFAALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLG 175 MG GFA LAA RAAA G++ TVA AA + V L++LRR GRI A + +G Sbjct 122 MGNGFAVLAAARAAARGEDTATVAAAARDTAAATRTLFVVDTLEHLRRGGRIGHAASMIG 181 Query 176 TALALKPLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAAND 235 TAL++KP+L V DG++V +++VRT + A ++ R + RP +AVHH+A P A Sbjct 182 TALSVKPVLHVADGRVVPLEKVRTTARALVRLVQRGVEAAAGRPVMVAVHHLAAPERAER 241 Query 236 VAAALAERLPACEPAMVTAMGPVLALHVGAGAVGV 270 +AA L ERLP V+ +G + HVG GAVG+ Sbjct 242 LAADLEERLPGLRELYVSELGAAIGAHVGPGAVGL 276 >gi|257055302|ref|YP_003133134.1| degV family protein [Saccharomonospora viridis DSM 43017] gi|256585174|gb|ACU96307.1| degV family protein [Saccharomonospora viridis DSM 43017] Length=284 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 119/277 (43%), Positives = 169/277 (62%), Gaps = 7/277 (2%) Query 3 VVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDI-----HKRHATTAG 57 V VVTD++ LP E++ IR VPLH+L+DG+ DGV+ P + +R TT+ Sbjct 3 VAVVTDSTAHLPEGFAERYGIRVVPLHVLVDGVASLDGVEIGPTALARALGERRIVTTSR 62 Query 58 ATPVELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGP-AVRVIDSRSAAM 116 TP E ++ +++ALA+ G D +V+VH+S LSGT+ AA L A E+GP VRV+DSR AM Sbjct 63 PTPAEFASVFRQALAE-GADAIVSVHLSKKLSGTWEAAVLAAQEVGPDVVRVVDSRGIAM 121 Query 117 GVGFAALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGT 176 G+GFAAL A AA G ++ V R A R V L++LRR GRI A A LGT Sbjct 122 GLGFAALRAAEAAHRGASVEEVERVAVETAERSETLFVVETLEHLRRGGRIGHAAALLGT 181 Query 177 ALALKPLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDV 236 ALA+KP+L + DG++ +++VRT+ A +++ V + GD +LAVHH+A P A ++ Sbjct 182 ALAVKPVLRMVDGEIRPLEKVRTMQRAMNRLVELVAEAAGDGEVSLAVHHLASPDRAAEL 241 Query 237 AAALAERLPACEPAMVTAMGPVLALHVGAGAVGVCVD 273 A L ERL +V+ +G V+ H G G +GV V Sbjct 242 ATRLDERLGKSSGCVVSELGAVVGAHTGPGVLGVVVQ 278 >gi|302528895|ref|ZP_07281237.1| conserved hypothetical protein [Streptomyces sp. AA4] gi|302437790|gb|EFL09606.1| conserved hypothetical protein [Streptomyces sp. AA4] Length=282 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 119/280 (43%), Positives = 169/280 (61%), Gaps = 8/280 (2%) Query 1 VTVVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDI-----HKRHATT 55 ++V VVTD++ LP E+ S+R VPLH+L++G+ DGV+ P + ++ TT Sbjct 1 MSVAVVTDSTAHLPEGFAERHSVRVVPLHVLVEGVCSLDGVEMGPAALAEALGERKIVTT 60 Query 56 AGATPVELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGP-AVRVIDSRSA 114 + TP E ++ AL D+G D VV+VH+S LSGT+ AA L A E+G VRV+DSR+ Sbjct 61 SRPTPAEFVTEFRAAL-DAGADAVVSVHLSRELSGTWEAAVLAAEEVGSDRVRVVDSRTT 119 Query 115 AMGVGFAALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWL 174 AMG+GFAAL A AAAAG V A A R V L++LRR GRI A A L Sbjct 120 AMGLGFAALHAADAAAAGASPAEVEEVATKAAERSSTLFVVETLEHLRRGGRIGSAAALL 179 Query 175 GTALALKPLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAAN 234 GTALA+KP+L + DG+++ +++VRT++ A +++ Q G P LAVHH+A P A Sbjct 180 GTALAVKPVLHMSDGRILPLEKVRTMNRAIGRLVELSVQAAGTGPVELAVHHLASPERAV 239 Query 235 DVAAALAERLPACEPA-MVTAMGPVLALHVGAGAVGVCVD 273 ++A L E +P C +V+ +G V+ H G G +GV V Sbjct 240 ELANRLEEVIPGCAGGCVVSEIGAVIGAHTGPGVLGVVVQ 279 >gi|54023347|ref|YP_117589.1| hypothetical protein nfa13800 [Nocardia farcinica IFM 10152] gi|54014855|dbj|BAD56225.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=280 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 117/272 (44%), Positives = 160/272 (59%), Gaps = 2/272 (0%) Query 3 VVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDIHKRHATTAGATPVE 62 VVVVTD+S LP ++ I VPLH+L+ +R+GV+ + D TT+ A+P E Sbjct 3 VVVVTDSSAGLPTATVDELGIAVVPLHVLVGDRAIREGVEPVEIDYTSDTVTTSAASPGE 62 Query 63 LSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAEL--GPAVRVIDSRSAAMGVGF 120 + Y++AL SGGDGVVAVH+S LSGT+ + ++ G VR++DS A + G Sbjct 63 MREIYEQALRRSGGDGVVAVHVSRQLSGTWESGRQAVRDMDAGRQVRLVDSLGAGLATGL 122 Query 121 AALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTALAL 180 ALAA R AA G LD V AA A +R F+ V R + LRR GR+S A ++ G+ L Sbjct 123 PALAAARRAARGGTLDEVYDAAVTAATRARTFILVNRTEQLRRGGRLSTAASFFGSELVT 182 Query 181 KPLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAAAL 240 KPLL + +GKL L ++ RT S A A ++ + G AA+AV H+ AA VA L Sbjct 183 KPLLQLVEGKLELREKARTRSKAYARLVAAAVEAAGADGAAVAVQHLGAAEAAEIVAGQL 242 Query 241 AERLPACEPAMVTAMGPVLALHVGAGAVGVCV 272 ERLP + +V GPVLA+H+G GA+GV V Sbjct 243 RERLPELKELVVAEFGPVLAVHLGVGALGVLV 274 >gi|330469618|ref|YP_004407361.1| degV family protein [Verrucosispora maris AB-18-032] gi|328812589|gb|AEB46761.1| degV family protein [Verrucosispora maris AB-18-032] Length=289 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 109/248 (44%), Positives = 151/248 (61%), Gaps = 7/248 (2%) Query 3 VVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDI------HKRHATTA 56 V VVTD++ LP +L + VPL ++L+G++ +GV P D + +T+ Sbjct 10 VAVVTDSTTYLPPELVLAHRLTVVPLTVVLNGVEGLEGVQVFPADATRALSARRISVSTS 69 Query 57 GATPVELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAM 116 +P + + Y R+L ++G +G+V+VH+S+ALSGT AAEL AA+ G V V+DSRS M Sbjct 70 RPSPEQFTRTY-RSLLEAGAEGIVSVHLSAALSGTVEAAELAAAQFGGQVTVVDSRSCGM 128 Query 117 GVGFAALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGT 176 G+GFA LAA RAAA G +L V AA A R F V L+ LRR GRI+ A+A LGT Sbjct 129 GLGFANLAAARAAAQGADLAGVRAAAVDAAGRTATFFYVDTLELLRRGGRINAAEALLGT 188 Query 177 ALALKPLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDV 236 AL++KP+L + DG +VL +VRT S A ++D + GD LAVHH+A P A D+ Sbjct 189 ALSVKPILHMPDGGIVLKDKVRTASRGVARLVDLAVEAAGDAQVDLAVHHLAAPQRAEDL 248 Query 237 AAALAERL 244 AL RL Sbjct 249 LGALTARL 256 >gi|238060583|ref|ZP_04605292.1| degV family protein [Micromonospora sp. ATCC 39149] gi|237882394|gb|EEP71222.1| degV family protein [Micromonospora sp. ATCC 39149] Length=326 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 111/249 (45%), Positives = 152/249 (62%), Gaps = 8/249 (3%) Query 3 VVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDI------HKRHATTA 56 V VVTD++ LP++L Q + VPL ++L+G + +GV+ PDD + +T+ Sbjct 3 VAVVTDSTAYLPSELVRQRRLTVVPLAVVLNGAEGLEGVETFPDDATRALGGRRVSVSTS 62 Query 57 GATPVELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELG-PAVRVIDSRSAA 115 +P + + Y R L D+G DGVV+VH+S+ LSGT AA L AAE G V V+DSRS Sbjct 63 RPSPEQFARTY-RGLLDAGADGVVSVHLSAELSGTVEAARLAAAETGGDRVAVVDSRSTG 121 Query 116 MGVGFAALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLG 175 MG+GF ALAA AAA G +L V RAAA A+ R + V L+ LRR GRI+ A+A LG Sbjct 122 MGLGFPALAAAGAAAGGADLSGVRRAAADAIDRTTIYFYVDTLEFLRRGGRINAAEALLG 181 Query 176 TALALKPLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAAND 235 TAL++KP++ + DG +VL +VRT S A ++D + D LAVHH+A P A Sbjct 182 TALSVKPIMHMPDGAIVLRDKVRTASRGLARLVDLAVEAARDADVDLAVHHLAAPQRAAQ 241 Query 236 VAAALAERL 244 + AAL RL Sbjct 242 LLAALTGRL 250 >gi|254774570|ref|ZP_05216086.1| DegV family protein [Mycobacterium avium subsp. avium ATCC 25291] Length=115 Score = 158 bits (400), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 89/114 (79%), Positives = 99/114 (87%), Gaps = 0/114 (0%) Query 4 VVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDIHKRHATTAGATPVEL 63 +VVTD+S RLPADL QW IR VPLHILLDG DLRDGVDE+P DIH+R ATTA ATP EL Sbjct 1 MVVTDSSARLPADLLGQWGIRVVPLHILLDGTDLRDGVDEVPADIHQRAATTAAATPAEL 60 Query 64 SAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMG 117 + AYQ+ALADSGGDGVVAVHISSALSGT RAAE TAA+L P +RV+DS+SAAMG Sbjct 61 ADAYQQALADSGGDGVVAVHISSALSGTCRAAERTAADLDPNLRVVDSKSAAMG 114 >gi|300788528|ref|YP_003768819.1| DegV family protein [Amycolatopsis mediterranei U32] gi|299798042|gb|ADJ48417.1| DegV family protein [Amycolatopsis mediterranei U32] gi|340530133|gb|AEK45338.1| DegV family protein [Amycolatopsis mediterranei S699] Length=285 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 118/279 (43%), Positives = 168/279 (61%), Gaps = 7/279 (2%) Query 1 VTVVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDI-----HKRHATT 55 ++V VVTD++ LP E+ ++R VPLH+L+DG+ DGV+ P + ++ TT Sbjct 1 MSVAVVTDSTAHLPEGFAERHAVRVVPLHVLVDGVVSLDGVETGPAAVAEAMKQRKIVTT 60 Query 56 AGATPVELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGP-AVRVIDSRSA 114 + TP E YQ A AD G D +V+VH+S LSGT+ AA L A E+GP VRV+DSR+ Sbjct 61 SRPTPTEFVKEYQAAFAD-GADAIVSVHLSRELSGTWEAAVLAAQEVGPDRVRVVDSRTT 119 Query 115 AMGVGFAALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWL 174 AMG+GFAAL A AA+AG V AA A V LD+LRR GRI A A L Sbjct 120 AMGLGFAALHAASAASAGASAADVEAAAVTAAGCSSTLFVVETLDHLRRGGRIGPAAALL 179 Query 175 GTALALKPLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAAN 234 GTALA+KP+L + +G+++ +++VRT++ A A +++ Q + LAVHH+A P A Sbjct 180 GTALAVKPVLHMSEGRILPLEKVRTMNRAIARLVELAAQAAAEDDVELAVHHLASPERAV 239 Query 235 DVAAALAERLPACEPAMVTAMGPVLALHVGAGAVGVCVD 273 ++A L E +P +V+ +G V+ H G G +GV V Sbjct 240 ELANRLEEAVPRSAGCVVSELGAVIGAHTGPGVLGVVVQ 278 >gi|302869319|ref|YP_003837956.1| degV family protein [Micromonospora aurantiaca ATCC 27029] gi|302572178|gb|ADL48380.1| degV family protein [Micromonospora aurantiaca ATCC 27029] Length=284 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 111/248 (45%), Positives = 150/248 (61%), Gaps = 6/248 (2%) Query 3 VVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDD----IHKRHATTAGA 58 V VVTD++ LP DL + VPL ++L+G + +GV+ P D + R + + + Sbjct 3 VAVVTDSTAYLPPDLVRARGLTVVPLTVVLNGAEGLEGVETSPADATRALSGRRVSVSTS 62 Query 59 TPV-ELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGP-AVRVIDSRSAAM 116 P E A RAL G DGVV+VH+S+ LSGT AA L AAE+G V V+DSRS M Sbjct 63 RPAPEQFAQVYRALLAEGADGVVSVHLSAELSGTVEAARLAAAEVGDDRVTVVDSRSTGM 122 Query 117 GVGFAALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGT 176 G+GF ALAA AAA G +L V AA AV+R + V L+ LRR GRI+ A+A LGT Sbjct 123 GLGFPALAAAAAAARGADLTGVRDAALDAVARTTIYFYVDTLEFLRRGGRINAAEALLGT 182 Query 177 ALALKPLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDV 236 AL++KP++ + DG +V+ +VRT S A ++D + GD P +AVHH+A P A + Sbjct 183 ALSVKPIMHMPDGAIVVKDKVRTASRGVARLVDLAVEAAGDAPVDIAVHHLAAPQRAEQL 242 Query 237 AAALAERL 244 AAL ERL Sbjct 243 LAALTERL 250 >gi|290960415|ref|YP_003491597.1| hypothetical protein SCAB_60381 [Streptomyces scabiei 87.22] gi|260649941|emb|CBG73057.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length=281 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 102/275 (38%), Positives = 148/275 (54%), Gaps = 4/275 (1%) Query 3 VVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVD----EIPDDIHKRHATTAGA 58 V +VTD++ LP E+ I VPL ++L L +G + + + KR + T Sbjct 5 VAIVTDSTAYLPPPAMERHGIIAVPLTVVLGDQALDEGTEISARSLAQALQKRRSVTTSR 64 Query 59 TPVELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGV 118 EL A R +A+SG +V++H+S+ SGT+ AA L A E VRV+D+ AM + Sbjct 65 PSPELFAETYRRIAESGATAIVSLHLSAEFSGTYDAAVLAAREAPVPVRVVDTGMVAMAL 124 Query 119 GFAALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTAL 178 GF AL A +A AG D AA + AF V L+ LRR GRI A+A G+AL Sbjct 125 GFCALTAAESAEAGGTADEAVTAAEKRAAGTSAFFYVDTLEYLRRGGRIGAAQALFGSAL 184 Query 179 ALKPLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAA 238 A+KPLL +D G++ ++++VRT S A A + + V + G P +AVHH+A P A+ +A Sbjct 185 AVKPLLQLDGGRIEMLEKVRTASRAIARLEEIVAERAGSAPVDIAVHHLAAPERASALAE 244 Query 239 ALAERLPACEPAMVTAMGPVLALHVGAGAVGVCVD 273 L RLP V+ +G V+ H G G + V Sbjct 245 RLRARLPGLADLHVSEVGAVIGAHTGPGLLAAVVS 279 >gi|315504206|ref|YP_004083093.1| degv family protein [Micromonospora sp. L5] gi|315410825|gb|ADU08942.1| degV family protein [Micromonospora sp. L5] Length=284 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 111/248 (45%), Positives = 150/248 (61%), Gaps = 6/248 (2%) Query 3 VVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDD----IHKRHATTAGA 58 V VVTD++ LP DL + VPL ++L+G + +GV+ P D + R + + + Sbjct 3 VAVVTDSTAYLPPDLVRARGLTVVPLTVVLNGAEGLEGVETSPADATRALSDRRVSVSTS 62 Query 59 TPV-ELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGP-AVRVIDSRSAAM 116 P E A RAL G DGVV+VH+S+ LSGT AA L AAE+G V V+DSRS M Sbjct 63 RPAPEQFAQVYRALLAEGADGVVSVHLSAELSGTVEAARLAAAEVGDDRVAVVDSRSTGM 122 Query 117 GVGFAALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGT 176 G+GF ALAA AAA G +L V AA AV+R + V L+ LRR GRI+ A+A LGT Sbjct 123 GLGFPALAAAAAAARGADLTGVRDAALDAVARTTIYFYVDTLEFLRRGGRINAAEALLGT 182 Query 177 ALALKPLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDV 236 AL++KP++ + DG +V+ +VRT S A ++D + GD P +AVHH+A P A + Sbjct 183 ALSVKPIMHMPDGAIVVKDKVRTASRGVARLVDLAVEAAGDAPVDIAVHHLAAPQRAEQL 242 Query 237 AAALAERL 244 AAL ERL Sbjct 243 LAALTERL 250 >gi|159039380|ref|YP_001538633.1| degV family protein [Salinispora arenicola CNS-205] gi|157918215|gb|ABV99642.1| degV family protein [Salinispora arenicola CNS-205] Length=286 Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 108/248 (44%), Positives = 148/248 (60%), Gaps = 7/248 (2%) Query 3 VVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDD----IHKRHAT--TA 56 V VVTD++ LPA L + VPL ++L+G + +GV+ P D ++ R + T+ Sbjct 3 VAVVTDSTAYLPAKLMAIHRLTVVPLTVVLNGAEGLEGVESFPADATRALNGRRVSVSTS 62 Query 57 GATPVELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAM 116 P + Y+R L D G DG+V+VH+S+ LSGT +A L AA+ G V V+DSRS M Sbjct 63 RPAPAQFVRTYRRLL-DGGADGIVSVHLSAELSGTVESARLAAADFGGRVAVVDSRSCGM 121 Query 117 GVGFAALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGT 176 G GF A+AA AAAAG L V AA AV+R + V L+ LRR GRI+ A A LGT Sbjct 122 GTGFPAVAAAEAAAAGVSLTDVRDAAQRAVARTTIYFYVDTLEFLRRGGRINAASALLGT 181 Query 177 ALALKPLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDV 236 AL++KP++ + DG +VL RVRTVS A ++D + G+ LA+HH+A P A + Sbjct 182 ALSVKPIMYMPDGAIVLRDRVRTVSRGVARLVDLAVEAAGEADVDLALHHLAAPQRAEAL 241 Query 237 AAALAERL 244 ALA RL Sbjct 242 RVALAVRL 249 >gi|84495879|ref|ZP_00994733.1| hypothetical protein JNB_00130 [Janibacter sp. HTCC2649] gi|84382647|gb|EAP98528.1| hypothetical protein JNB_00130 [Janibacter sp. HTCC2649] Length=280 Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 104/273 (39%), Positives = 148/273 (55%), Gaps = 6/273 (2%) Query 5 VVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVD----EIPDDI-HKRHATTAGAT 59 +VTD++ L ADL E I VPLH+++ G + R+GVD E+ D + H R +T+ Sbjct 5 LVTDSTAYLSADLIEAHGIGVVPLHVVVGGQERREGVDVAAGEVADALRHFRPVSTSRPA 64 Query 60 PVELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVG 119 P Y R LAD G D +V+VHISS LS T +A+L A + V VIDSRS M +G Sbjct 65 PQAFLDLY-RELADKGADSIVSVHISSDLSSTLGSAQLAAQQSPVPVTVIDSRSMGMAMG 123 Query 120 FAALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTALA 179 +A LA A G + VA A S V L++LRR GRI A A +G+ALA Sbjct 124 YAVLAGAALAEHGVTAEEVADHVRARCSNATVVFYVDTLEHLRRGGRIGKANALVGSALA 183 Query 180 LKPLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAAA 239 +KP+L + DG +V ++RVRT S A A + + + G + +AVHH+ A +A Sbjct 184 IKPILGLQDGAIVPLERVRTSSRAIARLEELAVEAAGSQRVDVAVHHLDSAERAEKLAER 243 Query 240 LAERLPACEPAMVTAMGPVLALHVGAGAVGVCV 272 L R+ E + +G V+ HVG G + + + Sbjct 244 LQSRIEGIEDFQLLELGAVVGAHVGPGTLAIAI 276 >gi|117927980|ref|YP_872531.1| DegV family protein [Acidothermus cellulolyticus 11B] gi|117648443|gb|ABK52545.1| degV family protein [Acidothermus cellulolyticus 11B] Length=283 Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 102/279 (37%), Positives = 154/279 (56%), Gaps = 9/279 (3%) Query 1 VTVVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPD----DIHKR--HAT 54 +TV VVTD++ P+D I +PL +L DG+ R+ +E+P ++ +R T Sbjct 1 MTVAVVTDSTAYFPSDAVVD-GIAVIPLTVLADGVAFREP-EEMPPSKAVELLRRGVRLT 58 Query 55 TAGATPVELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSA 114 T+ +P + Y++ L+ G DG+V+VH+S LSGT AA + A +G +RV+DS S Sbjct 59 TSRPSPAVFARTYEKLLS-GGADGIVSVHLSGRLSGTVEAAHIAARHIGGDIRVVDSESV 117 Query 115 AMGVGFAALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWL 174 MG+GFA LA AA +G +LD V + + + V L+ LRR GR+ A + Sbjct 118 GMGMGFAVLAGQAAARSGADLDRVHQVVERVLRATRLYCYVDTLEFLRRGGRLGTVPALV 177 Query 175 GTALALKPLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAAN 234 GTALA+KP+L+V+DG+LV ++RVRT + + D + P ++ VHH+ A+ Sbjct 178 GTALAVKPILAVEDGRLVPIERVRTAARGLTRLADIAAEYTDGFPVSVTVHHLDAAFRAD 237 Query 235 DVAAALAERLPACEPAMVTAMGPVLALHVGAGAVGVCVD 273 +AA L RLP V +G V+ H G G V V V Sbjct 238 RLAADLDARLPHLRELYVAEIGAVVGAHTGPGTVAVAVQ 276 >gi|163840681|ref|YP_001625086.1| DegV family protein [Renibacterium salmoninarum ATCC 33209] gi|162954157|gb|ABY23672.1| DegV family protein [Renibacterium salmoninarum ATCC 33209] Length=329 Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 113/290 (39%), Positives = 162/290 (56%), Gaps = 20/290 (6%) Query 3 VVVVTDTSCRLPADLREQWSIRQ---VPLHILLDGLDLRDGVDEIPDDIH-----KRHAT 54 + VVTD++ LPADL ++ Q VP+ +++DG +G E+ + + + Sbjct 33 IAVVTDSAAALPADLIAEFGNGQLSVVPMPVMVDGEIYSEGDAELIEVLSLALAAGKAIK 92 Query 55 TAGATPVELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSA 114 T+ +P + YQ ALAD G DG+ +VHIS+ LSGT AA L A+ + V+V+DSR+ Sbjct 93 TSRPSPGQFERVYQ-ALADQGFDGIFSVHISAELSGTVEAARLAASRVAIPVQVVDSRTV 151 Query 115 AMGVGFAALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWL 174 AM GF AA AAAAG +L VA AA A F V L+ LRR GRI A +WL Sbjct 152 AMAQGFGVRAALLAAAAGGDLPVVAAAAQKAFESSTVFFYVPSLEQLRRGGRIGAAASWL 211 Query 175 GTALALKPLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPA------ALAVHHVA 228 GT LA+KP+LSV DG++V ++RVR+ S A I RV +L A ++A+H Sbjct 212 GTVLAIKPILSVCDGQVVPLERVRSASKA----ISRVEELAKAELARRTNLSSIAIHDFG 267 Query 229 DPAAANDVAAALAERLPACEPAMVTAMGPVLALHVGAGAVGVCV-DVGAS 277 +PA + LAE E ++ + VLA HVG G + V + D+G++ Sbjct 268 NPAQGKLMLEKLAEINEPPEEIFISDLPAVLAAHVGLGVLAVVIADLGSA 317 >gi|331695850|ref|YP_004332089.1| degV family protein [Pseudonocardia dioxanivorans CB1190] gi|326950539|gb|AEA24236.1| degV family protein [Pseudonocardia dioxanivorans CB1190] Length=307 Score = 151 bits (382), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 118/277 (43%), Positives = 163/277 (59%), Gaps = 9/277 (3%) Query 3 VVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDI------HKRHATTA 56 V VVTD++ LPA + + IR VPL + L RDG D PD++ T+ Sbjct 3 VAVVTDSTSYLPAGVAAERGIRIVPLEVRLGDRTGRDGEDVTPDELVAALADRSLDVHTS 62 Query 57 GATPVELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPA-VRVIDSRSAA 115 TP +A Y+ AL + G GVV+VH+S LSGT+ AA L A E+GP VR++DSR+ A Sbjct 63 RPTPAAFAATYRDAL-EGGATGVVSVHLSRELSGTWDAARLAAEEVGPGRVRIVDSRAVA 121 Query 116 MGVGFAALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLG 175 MG+G+A LAA AA AG V +AAA +R F +V LD LRR GRI A G Sbjct 122 MGLGYAVLAACDAADAGAGGAEVEQAAADVAARCRVFFSVDSLDRLRRGGRIGAAAKLFG 181 Query 176 TALALKPLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAAND 235 TALA+KPLL + +G+++ +++VRT + A ++D G+ A LAVHH+ A A + Sbjct 182 TALAVKPLLHLAEGRIMPLEKVRTTARAAQRLLDLAVAAAGE-GADLAVHHLGAAARAEE 240 Query 236 VAAALAERLPACEPAMVTAMGPVLALHVGAGAVGVCV 272 +AAAL ERLP +V+ +G V+ H G G +G+ V Sbjct 241 LAAALRERLPDAARLLVSEVGAVIGAHAGPGLLGIVV 277 >gi|269837930|ref|YP_003320158.1| degV family protein [Sphaerobacter thermophilus DSM 20745] gi|269787193|gb|ACZ39336.1| degV family protein [Sphaerobacter thermophilus DSM 20745] Length=289 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 111/286 (39%), Positives = 154/286 (54%), Gaps = 17/286 (5%) Query 3 VVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDIHKR----HATTAGA 58 V VVTD++ LP ++ E + I VPL + +DG DGV P + +R + Sbjct 4 VAVVTDSTADLPREMIEAYDIHVVPLTVHIDGEVFEDGVSITPAEFMRRLTTTTTFPTTS 63 Query 59 TPV--ELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGP--AVRVIDSRSA 114 P + R LA+ D ++++HISS LSGT+++A L + + VIDSRS Sbjct 64 QPSVGRFQEVFNR-LAEEY-DAIISIHISSRLSGTYQSALLARDTINGRLPISVIDSRST 121 Query 115 AMGVGFAALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWL 174 +MG+GF L A + A AG +LDT+ RA A+ HA V L+ LRR GRI A + Sbjct 122 SMGLGFPVLRAAKLAQAGYDLDTIDRATRQAIESTHAVFLVDTLEYLRRGGRIGRAAEIV 181 Query 175 GTALALKPLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPA--ALAVHHVADPAA 232 GT L LKP+L +++G +V R RT ATA +I +LV D P LA+ + Sbjct 182 GTVLQLKPILRLEEGVVVPHARTRTRPKATAGLI----ELVRDFPRIDQLAILTTNGSSD 237 Query 233 ANDVAAALAERLPACEPAMVTAMGPVLALHVGAGAVGVCVDVGASP 278 A VA ALA+R P E + + PVLA HVG GA+GV V G +P Sbjct 238 AERVADALADRCPR-ERMIFAELSPVLAAHVGPGALGVVVYEGDAP 282 >gi|29832033|ref|NP_826667.1| hypothetical protein SAV_5490 [Streptomyces avermitilis MA-4680] gi|29609151|dbj|BAC73202.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length=281 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 99/274 (37%), Positives = 146/274 (54%), Gaps = 4/274 (1%) Query 3 VVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVD----EIPDDIHKRHATTAGA 58 V +VTD++ L E+ I VPL ++L L +G + + + KR T Sbjct 5 VAIVTDSTAYLLPRTMERHGITAVPLTVVLGDQALEEGTEISARSLAQALQKRRPVTTSR 64 Query 59 TPVELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGV 118 +L A R A++G +V++H+SS +SGT+ AA A E VRV+D+ AM + Sbjct 65 PSPQLFAETYRKAAEAGATEIVSLHLSSEISGTYDAAVQAAREAPVPVRVVDTGMVAMAL 124 Query 119 GFAALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTAL 178 GF ALAA AG +D AA + + V LD LRR GRI A+A LG+AL Sbjct 125 GFCALAAAETVGAGGTVDEAVTAAEKRAAGTSTYFYVDNLDYLRRGGRIGAAQALLGSAL 184 Query 179 ALKPLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAA 238 A+KPLL +DDG++ L+++VRT S A A + + + + G +AVHH+A P A+ +A Sbjct 185 AVKPLLQLDDGRIELLEKVRTASKAIARLEEIIAERAGSAQVDIAVHHLAAPERASALAD 244 Query 239 ALAERLPACEPAMVTAMGPVLALHVGAGAVGVCV 272 L R+P V+ +G V+ H G G +G V Sbjct 245 RLRARVPGVADLHVSEVGAVIGAHTGPGLLGAVV 278 >gi|21221028|ref|NP_626807.1| hypothetical protein SCO2569 [Streptomyces coelicolor A3(2)] gi|289771694|ref|ZP_06531072.1| UPF0230 protein [Streptomyces lividans TK24] gi|30179871|sp|Q9RDL7.1|Y2569_STRCO RecName: Full=DegV domain-containing protein SCO2569 gi|6714675|emb|CAB66247.1| conserved hypothetical protein SCC123.07c [Streptomyces coelicolor A3(2)] gi|289701893|gb|EFD69322.1| UPF0230 protein [Streptomyces lividans TK24] Length=281 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 105/274 (39%), Positives = 151/274 (56%), Gaps = 4/274 (1%) Query 3 VVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVD----EIPDDIHKRHATTAGA 58 V +VTD++ LPA E+ I VPL ++L L +G + + + KR T Sbjct 5 VAIVTDSTAYLPARAMERHGITAVPLTVVLGDRALEEGTEISTRSLAQALQKRRPVTTSR 64 Query 59 TPVELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGV 118 EL A R +A+SG DG+V++H+S+ LSGT AA + A E VRV+D+ AM + Sbjct 65 PNPELFAETYRRIAESGADGIVSLHLSAELSGTHDAAVVAAREAPVPVRVVDTGMIAMAL 124 Query 119 GFAALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTAL 178 GF ALAA A AG +D AA + A+ V LD LRR GRI A+A G+AL Sbjct 125 GFCALAAAETAEAGGTVDEAVTAAEKRAAGTSAYFYVDTLDYLRRGGRIGAAQALFGSAL 184 Query 179 ALKPLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAA 238 A+KPLL ++ G++ +++VRT S A A + + G P +AVHH+A P A+ +A Sbjct 185 AVKPLLQLEGGRIEPLEKVRTASKAIARLEEIAADRAGGAPVDIAVHHLAAPDRASALAD 244 Query 239 ALAERLPACEPAMVTAMGPVLALHVGAGAVGVCV 272 L +R+P V+ +G V+ H G G +GV V Sbjct 245 RLRDRVPGLADLHVSEVGAVIGAHTGPGLLGVVV 278 >gi|320010874|gb|ADW05724.1| degV family protein [Streptomyces flavogriseus ATCC 33331] Length=281 Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 107/274 (40%), Positives = 153/274 (56%), Gaps = 4/274 (1%) Query 3 VVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVD----EIPDDIHKRHATTAGA 58 V +VTD++ LP E+ I VPL ++L L +G + + + KR + T Sbjct 5 VAIVTDSTAYLPPQTMERHGITAVPLTVVLGDQALEEGTEISARSLALALQKRRSVTTSR 64 Query 59 TPVELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGV 118 ++ AA RA+A++G G+V++H+SS LSGT+ AA L A E VRV+D+ AM + Sbjct 65 PSPDVFAATYRAVAEAGATGIVSLHLSSELSGTYDAAVLAAKEAPVPVRVVDTGMVAMAL 124 Query 119 GFAALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGTAL 178 GF ALAA A AG LD AA + AF V LD LRR GRI A+A LG+AL Sbjct 125 GFCALAAAEAGEAGGGLDEAVAAADKRAAGTSAFFYVDTLDYLRRGGRIGAAQALLGSAL 184 Query 179 ALKPLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDVAA 238 A+KPLL ++DG++ ++++VRT S A A + + V G +AVHH+A P A +A Sbjct 185 AVKPLLRLEDGRIEMLEKVRTASKAIARLEEIVAAQAGTGAVDIAVHHLAAPEGAERLAE 244 Query 239 ALAERLPACEPAMVTAMGPVLALHVGAGAVGVCV 272 L R+P V+ +G V+ H G G +G V Sbjct 245 RLRGRIPGLADLHVSEVGAVIGAHTGPGLLGAVV 278 >gi|291302918|ref|YP_003514196.1| degV family protein [Stackebrandtia nassauensis DSM 44728] gi|290572138|gb|ADD45103.1| degV family protein [Stackebrandtia nassauensis DSM 44728] Length=326 Score = 148 bits (374), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 107/277 (39%), Positives = 153/277 (56%), Gaps = 8/277 (2%) Query 3 VVVVTDTSCRLPADLREQWSIRQVPLHILLDGLDLRDGVDEIPDDI------HKRHATTA 56 V VVTD++ LP +++ + +P+ + ++G +G + DI + +T+ Sbjct 3 VAVVTDSTACLPPGAEDEYPLTIIPMRVTINGYSGAEGTEITTVDIARAFQERRVEVSTS 62 Query 57 GATPVELSAAYQRALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAM 116 P ++ YQR L D G GVV+VH+S+ALSGT+ +A L A E V V+DS +A M Sbjct 63 RPAPGAVAEIYQRLL-DDGATGVVSVHLSAALSGTYESAVLAAREFDGKVTVVDSANAGM 121 Query 117 GVGFAALAAGRAAAAGDELDTVARAAAAAVSRIHAFVAVARLDNLRRSGRISGAKAWLGT 176 G+GF LAA AA G VA +A+AA S F V L+ LRR GRIS A A LGT Sbjct 122 GLGFCVLAASAAAKRGRGARFVADSASAASSATDTFFYVDTLEFLRRGGRISAAGALLGT 181 Query 177 ALALKPLLSVDDGKLVLVQRVRTVSNATAVMIDRVCQLVGDRPAALAVHHVADPAAANDV 236 ALA+KP+L V+ G++ L +VRT + A A + D V D P LA+HH+ P A ++ Sbjct 182 ALAVKPILHVESGEVKLRDKVRTSTRALARLEDLVVAAGRDGPVDLALHHLRSPERAEEL 241 Query 237 AAALAERL-PACEPAMVTAMGPVLALHVGAGAVGVCV 272 A L +R +T +G V+A H G G +G V Sbjct 242 AHRLRDRFGRQVREVFITEVGAVIAAHCGPGLLGAVV 278 Lambda K H 0.320 0.132 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 442782057568 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40