BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2427A Length=171 Score E Sequences producing significant alignments: (Bits) Value gi|15841947|ref|NP_336984.1| hypothetical protein MT2501 [Mycoba... 151 3e-35 gi|167969746|ref|ZP_02552023.1| hypothetical protein MtubH3_1766... 139 2e-31 gi|15841948|ref|NP_336985.1| hypothetical protein MT2502 [Mycoba... 123 9e-27 gi|289443952|ref|ZP_06433696.1| OxyR [Mycobacterium tuberculosis... 122 2e-26 gi|157102408|gb|ABV23720.1| OxyR [Mycobacterium canettii] 112 3e-23 gi|254819312|ref|ZP_05224313.1| hydrogen peroxide-inducible gene... 68.6 3e-10 gi|342861215|ref|ZP_08717863.1| hydrogen peroxide-inducible gene... 67.0 1e-09 gi|15828101|ref|NP_302364.1| LysR family transcriptional regulat... 65.1 3e-09 gi|254775314|ref|ZP_05216830.1| hydrogen peroxide-inducible gene... 64.7 4e-09 gi|118463106|ref|YP_882025.1| hydrogen peroxide-inducible genes ... 64.7 4e-09 gi|296164879|ref|ZP_06847435.1| hydrogen peroxide-inducible gene... 63.9 8e-09 gi|336457527|gb|EGO36533.1| transcriptional regulator [Mycobacte... 62.0 3e-08 gi|118618390|ref|YP_906722.1| hydrogen peroxide-inducible genes ... 58.5 3e-07 gi|183982762|ref|YP_001851053.1| hydrogen peroxide-inducible gen... 58.2 4e-07 gi|333990604|ref|YP_004523218.1| hydrogen peroxide-inducible gen... 57.4 8e-07 gi|169631484|ref|YP_001705133.1| hydrogen peroxide-inducible gen... 57.0 9e-07 gi|6225813|sp|O87324.1|OXYR_MYCMR RecName: Full=Probable hydroge... 57.0 9e-07 gi|240170514|ref|ZP_04749173.1| hydrogen peroxide-inducible gene... 55.1 4e-06 gi|41407688|ref|NP_960524.1| OxyR [Mycobacterium avium subsp. pa... 50.8 6e-05 gi|8134621|sp|O87883.1|OXYR_MYCXE RecName: Full=Probable hydroge... 49.7 1e-04 gi|209963775|ref|YP_002296690.1| hydrogen peroxide-inducible gen... 49.3 2e-04 gi|269128437|ref|YP_003301807.1| LysR family transcriptional reg... 48.1 5e-04 gi|291451526|ref|ZP_06590916.1| hydrogen peroxide sensing regula... 48.1 5e-04 gi|312139410|ref|YP_004006746.1| lysr family transcriptional reg... 45.8 0.002 gi|111023758|ref|YP_706730.1| LysR family transcriptional regula... 45.8 0.002 gi|12150266|gb|AAG49024.1|U43811_2 OxyR [Mycobacterium marinum] 45.1 0.004 gi|54025758|ref|YP_120000.1| putative hydrogen peroxide sensing ... 43.5 0.011 gi|302206352|gb|ADL10694.1| Transcriptional activator protein ly... 42.7 0.018 gi|300858645|ref|YP_003783628.1| LysR family transcriptional reg... 42.7 0.018 gi|229490873|ref|ZP_04384708.1| putative hydrogen peroxide-induc... 42.0 0.035 gi|226306275|ref|YP_002766235.1| oxidative stress response regul... 41.6 0.047 gi|226366194|ref|YP_002783977.1| oxidative stress response regul... 41.2 0.050 gi|330828662|ref|YP_004391614.1| hydrogen peroxide-inducible gen... 40.4 0.11 gi|307257551|ref|ZP_07539314.1| Hydrogen peroxide-inducible prot... 40.0 0.12 gi|90418681|ref|ZP_01226592.1| putative transcriptional regulato... 39.7 0.15 gi|261493515|ref|ZP_05990036.1| LysR family transcriptional regu... 38.9 0.24 gi|254363242|ref|ZP_04979290.1| LysR family transcriptional regu... 38.9 0.24 gi|117620885|ref|YP_857687.1| hydrogen peroxide-inducible genes ... 38.9 0.28 gi|158314124|ref|YP_001506632.1| LysR family transcriptional reg... 38.5 0.34 gi|260595988|ref|YP_003208559.1| DNA-binding transcriptional reg... 38.5 0.37 gi|145298146|ref|YP_001140987.1| hydrogen peroxide-inducible gen... 38.1 0.43 gi|38234006|ref|NP_939773.1| putative transcriptional regulator ... 38.1 0.48 gi|227488730|ref|ZP_03919046.1| hydrogen peroxide sensing regula... 38.1 0.49 gi|74318341|ref|YP_316081.1| oxidative stress transcriptional re... 38.1 0.52 gi|85060136|ref|YP_455838.1| DNA-binding transcriptional regulat... 37.7 0.58 gi|326384471|ref|ZP_08206151.1| LysR substrate-binding protein [... 37.7 0.63 gi|154248142|ref|YP_001419100.1| LysR family transcriptional reg... 37.7 0.68 gi|218195571|gb|EEC77998.1| hypothetical protein OsI_17389 [Oryz... 37.4 0.77 gi|156935911|ref|YP_001439827.1| DNA-binding transcriptional reg... 37.4 0.77 gi|261819549|ref|YP_003257655.1| OxyR family transcriptional reg... 37.4 0.81 >gi|15841947|ref|NP_336984.1| hypothetical protein MT2501 [Mycobacterium tuberculosis CDC1551] gi|254365203|ref|ZP_04981249.1| OxyR [Mycobacterium tuberculosis str. Haarlem] gi|289746209|ref|ZP_06505587.1| transcriptional regulator, OxyR [Mycobacterium tuberculosis 02_1987] gi|13882219|gb|AAK46798.1| hypothetical protein MT2501 [Mycobacterium tuberculosis CDC1551] gi|134150717|gb|EBA42762.1| OxyR [Mycobacterium tuberculosis str. Haarlem] gi|289686737|gb|EFD54225.1| transcriptional regulator, OxyR [Mycobacterium tuberculosis 02_1987] Length=81 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 77/78 (99%), Positives = 78/78 (100%), Gaps = 0/78 (0%) Query 94 VAGHRRAVRDRRAGGDTDSADRGRRRDHAKPAGTRPIRRPCPARRIGLVFSSFGGREKSY 153 +AGHRRAVRDRRAGGDTDSADRGRRRDHAKPAGTRPIRRPCPARRIGLVFSSFGGREKSY Sbjct 1 MAGHRRAVRDRRAGGDTDSADRGRRRDHAKPAGTRPIRRPCPARRIGLVFSSFGGREKSY 60 Query 154 QRLAGIIGKLIRGDRQVR 171 QRLAGIIGKLIRGDRQVR Sbjct 61 QRLAGIIGKLIRGDRQVR 78 >gi|167969746|ref|ZP_02552023.1| hypothetical protein MtubH3_17665 [Mycobacterium tuberculosis H37Ra] Length=74 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 70/71 (99%), Positives = 71/71 (100%), Gaps = 0/71 (0%) Query 101 VRDRRAGGDTDSADRGRRRDHAKPAGTRPIRRPCPARRIGLVFSSFGGREKSYQRLAGII 160 +RDRRAGGDTDSADRGRRRDHAKPAGTRPIRRPCPARRIGLVFSSFGGREKSYQRLAGII Sbjct 1 MRDRRAGGDTDSADRGRRRDHAKPAGTRPIRRPCPARRIGLVFSSFGGREKSYQRLAGII 60 Query 161 GKLIRGDRQVR 171 GKLIRGDRQVR Sbjct 61 GKLIRGDRQVR 71 >gi|15841948|ref|NP_336985.1| hypothetical protein MT2502 [Mycobacterium tuberculosis CDC1551] gi|253798493|ref|YP_003031494.1| OxyR protein [Mycobacterium tuberculosis KZN 1435] gi|254365204|ref|ZP_04981250.1| OxyR [Mycobacterium tuberculosis str. Haarlem] 26 more sequence titles Length=64 Score = 123 bits (309), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 63/64 (99%), Positives = 64/64 (100%), Gaps = 0/64 (0%) Query 9 VAGLRAFAAVAAKQWFSSAASILDMSQSTLRRAVVGSRSRCTPRACLSGKQRVPLTALSE 68 +AGLRAFAAVAAKQWFSSAASILDMSQSTLRRAVVGSRSRCTPRACLSGKQRVPLTALSE Sbjct 1 MAGLRAFAAVAAKQWFSSAASILDMSQSTLRRAVVGSRSRCTPRACLSGKQRVPLTALSE 60 Query 69 LTLL 72 LTLL Sbjct 61 LTLL 64 >gi|289443952|ref|ZP_06433696.1| OxyR [Mycobacterium tuberculosis T46] gi|289570578|ref|ZP_06450805.1| hypothetical protein TBJG_00945 [Mycobacterium tuberculosis T17] gi|289751034|ref|ZP_06510412.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289754536|ref|ZP_06513914.1| predicted protein [Mycobacterium tuberculosis EAS054] gi|289416871|gb|EFD14111.1| OxyR [Mycobacterium tuberculosis T46] gi|289544332|gb|EFD47980.1| hypothetical protein TBJG_00945 [Mycobacterium tuberculosis T17] gi|289691621|gb|EFD59050.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289695123|gb|EFD62552.1| predicted protein [Mycobacterium tuberculosis EAS054] Length=64 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 62/64 (97%), Positives = 63/64 (99%), Gaps = 0/64 (0%) Query 9 VAGLRAFAAVAAKQWFSSAASILDMSQSTLRRAVVGSRSRCTPRACLSGKQRVPLTALSE 68 +AG RAFAAVAAKQWFSSAASILDMSQSTLRRAVVGSRSRCTPRACLSGKQRVPLTALSE Sbjct 1 MAGFRAFAAVAAKQWFSSAASILDMSQSTLRRAVVGSRSRCTPRACLSGKQRVPLTALSE 60 Query 69 LTLL 72 LTLL Sbjct 61 LTLL 64 >gi|157102408|gb|ABV23720.1| OxyR [Mycobacterium canettii] Length=57 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 57/57 (100%), Positives = 57/57 (100%), Gaps = 0/57 (0%) Query 16 AAVAAKQWFSSAASILDMSQSTLRRAVVGSRSRCTPRACLSGKQRVPLTALSELTLL 72 AAVAAKQWFSSAASILDMSQSTLRRAVVGSRSRCTPRACLSGKQRVPLTALSELTLL Sbjct 1 AAVAAKQWFSSAASILDMSQSTLRRAVVGSRSRCTPRACLSGKQRVPLTALSELTLL 57 >gi|254819312|ref|ZP_05224313.1| hydrogen peroxide-inducible genes activator [Mycobacterium intracellulare ATCC 13950] Length=311 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 56/131 (43%), Positives = 70/131 (54%), Gaps = 18/131 (13%) Query 55 LSGKQRVPLTALSELTLLXLHEGHCLRDQTLDAAQHPGGVAGHRRAVRDRRAGGDTDSAD 114 L+GK+RVP TAL++L LL L EGHCLRDQ LD AG R + + RA + Sbjct 182 LAGKRRVPATALADLPLLLLDEGHCLRDQALDVCHK----AGVRAELANTRAASLATAVQ 237 Query 115 --RGRRRDHAKPAGTRPIR------------RPCPARRIGLVFSSFGGREKSYQRLAGII 160 G P P+ P P RRIGLV+ S GR++SY++LAG+I Sbjct 238 CVTGGLGVTLIPQSAVPVEASRSRLGLAQFAAPRPGRRIGLVYRSSSGRDESYRQLAGLI 297 Query 161 GKLIRGDRQVR 171 GKLI G QVR Sbjct 298 GKLISGQHQVR 308 Score = 44.3 bits (103), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/36 (62%), Positives = 27/36 (75%), Gaps = 0/36 (0%) Query 7 PAVAGLRAFAAVAAKQWFSSAASILDMSQSTLRRAV 42 P +AGLRAF AVA K FS AA+ L +SQSTL +A+ Sbjct 8 PTIAGLRAFVAVAEKHQFSGAATALGVSQSTLSQAL 43 >gi|342861215|ref|ZP_08717863.1| hydrogen peroxide-inducible genes activator [Mycobacterium colombiense CECT 3035] gi|342131115|gb|EGT84396.1| hydrogen peroxide-inducible genes activator [Mycobacterium colombiense CECT 3035] Length=311 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/131 (43%), Positives = 68/131 (52%), Gaps = 18/131 (13%) Query 55 LSGKQRVPLTALSELTLLXLHEGHCLRDQTLDAAQHPGGVAGHRRAVRDRRAGGDTDSAD 114 L+GK+RVP TAL++L LL L EGHCLRDQ LD AG R + + RA + Sbjct 182 LAGKRRVPATALADLPLLLLDEGHCLRDQALDVCHK----AGVRAELANTRAASLATAVQ 237 Query 115 --RGRRRDHAKPAGTRPIR------------RPCPARRIGLVFSSFGGREKSYQRLAGII 160 G P P+ P P RRIGLVF S GR++SY+RLAG+I Sbjct 238 CVTGGLGVTLIPQSAVPVEASRSRLGLAQFAAPRPGRRIGLVFRSSSGRDESYRRLAGLI 297 Query 161 GKLIRGDRQVR 171 G LI QVR Sbjct 298 GTLISSQHQVR 308 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/59 (48%), Positives = 37/59 (63%), Gaps = 0/59 (0%) Query 7 PAVAGLRAFAAVAAKQWFSSAASILDMSQSTLRRAVVGSRSRCTPRACLSGKQRVPLTA 65 P +AGLRAF AVA K+ FSSAA+ L +SQSTL +A+ + + +RV LTA Sbjct 8 PTIAGLRAFVAVAEKRQFSSAATSLGVSQSTLSQALAALEAGLGTQLVERSTRRVFLTA 66 >gi|15828101|ref|NP_302364.1| LysR family transcriptional regulator [Mycobacterium leprae TN] gi|221230578|ref|YP_002503994.1| putative LysR-family transcriptional regulator [Mycobacterium leprae Br4923] gi|1709510|sp|P52678.1|OXYR_MYCLE RecName: Full=Probable hydrogen peroxide-inducible genes activator gi|13093655|emb|CAC30996.1| probable LysR-family transcriptional regulator [Mycobacterium leprae] gi|219933685|emb|CAR72138.1| probable LysR-family transcriptional regulator [Mycobacterium leprae Br4923] Length=311 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/127 (44%), Positives = 65/127 (52%), Gaps = 10/127 (7%) Query 55 LSGKQRVPLTALSELTLLXLHEGHCLRDQTLDAAQHPG---GVAGHRRAVRDRRAGGDTD 111 LSGK+RVP TAL++L LL L EGHCLRDQTLD + G +A R A T Sbjct 182 LSGKRRVPTTALAQLPLLLLDEGHCLRDQTLDICRKSGVQAELANTRAASLATAVQCVTG 241 Query 112 SADRGRRRDHAKPA-------GTRPIRRPCPARRIGLVFSSFGGREKSYQRLAGIIGKLI 164 A P G PCP RRIGL F S GR SY+++A IIG+LI Sbjct 242 GLGVTLLPQSAAPVESVRSKLGLAQFAAPCPGRRIGLAFRSASGRSASYRQIAKIIGELI 301 Query 165 RGDRQVR 171 + VR Sbjct 302 STEHHVR 308 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 22/41 (54%), Positives = 27/41 (66%), Gaps = 0/41 (0%) Query 7 PAVAGLRAFAAVAAKQWFSSAASILDMSQSTLRRAVVGSRS 47 P +AGLRAF AV K FS+AAS L + QSTL +A+ S Sbjct 8 PTIAGLRAFVAVVEKGHFSAAASFLGVRQSTLSQALAALES 48 >gi|254775314|ref|ZP_05216830.1| hydrogen peroxide-inducible genes activator [Mycobacterium avium subsp. avium ATCC 25291] gi|1709509|sp|P52677.1|OXYR_MYCAV RecName: Full=Probable hydrogen peroxide-inducible genes activator gi|1040853|gb|AAA79918.1| similar to Escherichia coli OxyR gene, Swiss-Prot Accession Number P11721 [Mycobacterium avium] Length=311 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 55/131 (42%), Positives = 67/131 (52%), Gaps = 18/131 (13%) Query 55 LSGKQRVPLTALSELTLLXLHEGHCLRDQTLDAAQHPGGVAGHRRAVRDRRAGGDTDSAD 114 L+GK+RVP TAL++L LL L EGHCLRDQ LD AG R + + RA + Sbjct 182 LAGKRRVPATALADLPLLLLDEGHCLRDQALDVCHK----AGVRAELANTRAASLATAVQ 237 Query 115 --RGRRRDHAKPAGTRPIR------------RPCPARRIGLVFSSFGGREKSYQRLAGII 160 G P P+ P P RRIGLVF S GR+ SY+ LAG+I Sbjct 238 CVTGGLGVTLIPQSAVPVEASRSRLGLAQFAAPRPGRRIGLVFRSSSGRDDSYRELAGLI 297 Query 161 GKLIRGDRQVR 171 G+LI QVR Sbjct 298 GELISSQHQVR 308 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 21/36 (59%), Positives = 27/36 (75%), Gaps = 0/36 (0%) Query 7 PAVAGLRAFAAVAAKQWFSSAASILDMSQSTLRRAV 42 P +AGLRAF AVA K+ FS AA+ L +SQSTL + + Sbjct 8 PTIAGLRAFVAVAEKRQFSGAATALGVSQSTLSQVL 43 >gi|118463106|ref|YP_882025.1| hydrogen peroxide-inducible genes activator [Mycobacterium avium 104] gi|118164393|gb|ABK65290.1| probable hydrogen peroxide-inducible genes activator [Mycobacterium avium 104] Length=311 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 55/131 (42%), Positives = 67/131 (52%), Gaps = 18/131 (13%) Query 55 LSGKQRVPLTALSELTLLXLHEGHCLRDQTLDAAQHPGGVAGHRRAVRDRRAGGDTDSAD 114 L+GK+RVP TAL++L LL L EGHCLRDQ LD AG R + + RA + Sbjct 182 LAGKRRVPATALADLPLLLLDEGHCLRDQALDVCHK----AGVRAELANTRAASLATAVQ 237 Query 115 --RGRRRDHAKPAGTRPIR------------RPCPARRIGLVFSSFGGREKSYQRLAGII 160 G P P+ P P RRIGLVF S GR+ SY+ LAG+I Sbjct 238 CVTGGLGVTLIPQSAVPVEASRSRLGLAQFAAPRPGRRIGLVFRSSSGRDDSYRELAGLI 297 Query 161 GKLIRGDRQVR 171 G+LI QVR Sbjct 298 GELISSQHQVR 308 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 22/36 (62%), Positives = 28/36 (78%), Gaps = 0/36 (0%) Query 7 PAVAGLRAFAAVAAKQWFSSAASILDMSQSTLRRAV 42 P +AGLRAF AVA K+ FS AA+ L +SQSTL +A+ Sbjct 8 PTIAGLRAFVAVAEKRQFSGAATALGVSQSTLSQAL 43 >gi|296164879|ref|ZP_06847435.1| hydrogen peroxide-inducible genes activator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899721|gb|EFG79171.1| hydrogen peroxide-inducible genes activator [Mycobacterium parascrofulaceum ATCC BAA-614] Length=320 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 55/131 (42%), Positives = 66/131 (51%), Gaps = 18/131 (13%) Query 55 LSGKQRVPLTALSELTLLXLHEGHCLRDQTLDAAQHPGGVAGHRRAVRDRRAGGDTDSAD 114 LSGK+RVP TAL++L LL L EGHCLRDQ LD AG R + + RA + Sbjct 191 LSGKKRVPATALADLPLLLLDEGHCLRDQALDVCHK----AGVRAELANTRAASLATAVQ 246 Query 115 --RGRRRDHAKPAGTRPIR------------RPCPARRIGLVFSSFGGREKSYQRLAGII 160 G P P+ P P RRIGLV+ S GR++SY+RLAG I Sbjct 247 CVTGGLGVTLIPQSAVPVEASRSRLGLAQFATPRPGRRIGLVYRSSSGRDESYRRLAGTI 306 Query 161 GKLIRGDRQVR 171 G LI VR Sbjct 307 GGLISNQHPVR 317 Score = 44.3 bits (103), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/59 (45%), Positives = 36/59 (62%), Gaps = 0/59 (0%) Query 7 PAVAGLRAFAAVAAKQWFSSAASILDMSQSTLRRAVVGSRSRCTPRACLSGKQRVPLTA 65 P +AGLRAF A+A K+ FS AA+ L +SQSTL +A+ + + +RV LTA Sbjct 17 PTIAGLRAFVAIAEKRQFSGAATALGVSQSTLSQALAALETGLGTQLVERSTRRVLLTA 75 >gi|336457527|gb|EGO36533.1| transcriptional regulator [Mycobacterium avium subsp. paratuberculosis S397] Length=329 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/131 (42%), Positives = 67/131 (52%), Gaps = 19/131 (14%) Query 55 LSGKQRVPLTALSELTLLXLHEGHCLRDQTLDAAQHPGGVAGHRRAVRDRRAGGDTDSAD 114 L+GK+RVP TAL++L LL L EGHCLRDQ LD AG R + + RA + Sbjct 201 LAGKRRVPATALADLPLL-LDEGHCLRDQALDVCHK----AGVRAELANTRAASLATAVQ 255 Query 115 --RGRRRDHAKPAGTRPIR------------RPCPARRIGLVFSSFGGREKSYQRLAGII 160 G P P+ P P RRIGLVF S GR+ SY+ LAG+I Sbjct 256 CVTGGLGVTLIPQSAVPVEASRSRLGLAQFAAPRPGRRIGLVFRSSSGRDDSYRELAGLI 315 Query 161 GKLIRGDRQVR 171 G+LI QVR Sbjct 316 GELISSQHQVR 326 Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/36 (62%), Positives = 28/36 (78%), Gaps = 0/36 (0%) Query 7 PAVAGLRAFAAVAAKQWFSSAASILDMSQSTLRRAV 42 P +AGLRAF AVA K+ FS AA+ L +SQSTL +A+ Sbjct 27 PTIAGLRAFVAVAEKRQFSGAATALGVSQSTLSQAL 62 >gi|118618390|ref|YP_906722.1| hydrogen peroxide-inducible genes activator, OxyR [Mycobacterium ulcerans Agy99] gi|118570500|gb|ABL05251.1| hydrogen peroxide-inducible genes activator, OxyR [Mycobacterium ulcerans Agy99] Length=314 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/136 (39%), Positives = 69/136 (51%), Gaps = 20/136 (14%) Query 51 PRACLSGKQRVPLTALSELTLLXLHEGHCLRDQTLDAAQHPGGVAGHRRAVRDRRA---- 106 P ++ + VP+ ALSEL LL L EGHCLRDQ LD Q+ G A H D A Sbjct 181 PGHPMADRHGVPVAALSELPLLLLDEGHCLRDQALDVCQNAGVRAEHADTRADSLATAVQ 240 Query 107 ---GG--------DTDSADRGRRRDHAKPAGTRPIRRPCPARRIGLVFSSFGGREKSYQR 155 GG S + R R G P P RRIGLV+ + GR+++Y++ Sbjct 241 CVNGGLGVTLIPQSAVSVEAARSR-----VGLTHFAAPTPGRRIGLVYRASSGRDEAYRQ 295 Query 156 LAGIIGKLIRGDRQVR 171 LA I+G+ I ++QVR Sbjct 296 LAAIMGESISNEQQVR 311 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/36 (64%), Positives = 28/36 (78%), Gaps = 0/36 (0%) Query 7 PAVAGLRAFAAVAAKQWFSSAASILDMSQSTLRRAV 42 P +AGLRAF AVA KQ F SAA+ L +SQSTL +A+ Sbjct 11 PTLAGLRAFVAVAEKQHFGSAANALGVSQSTLSQAL 46 >gi|183982762|ref|YP_001851053.1| hydrogen peroxide-inducible genes activator, OxyR [Mycobacterium marinum M] gi|183176088|gb|ACC41198.1| hydrogen peroxide-inducible genes activator, OxyR [Mycobacterium marinum M] Length=319 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/115 (37%), Positives = 56/115 (49%), Gaps = 28/115 (24%) Query 76 EGHCLRDQTLDAAQHPGGVAGHRRAVRDRRA-----------GG--------DTDSADRG 116 EGHCLRDQ LD Q+ AG R + D RA GG S + Sbjct 211 EGHCLRDQALDVCQN----AGVRAELADTRAASLATAVQCVNGGLGVTLIPQSAVSVEAA 266 Query 117 RRRDHAKPAGTRPIRRPCPARRIGLVFSSFGGREKSYQRLAGIIGKLIRGDRQVR 171 R R G P P RRIGLV+ + GR+++Y++LA I+G+ I ++QVR Sbjct 267 RSR-----VGLAHFAAPTPGRRIGLVYRASSGRDEAYRQLAAIMGESISNEQQVR 316 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/36 (64%), Positives = 28/36 (78%), Gaps = 0/36 (0%) Query 7 PAVAGLRAFAAVAAKQWFSSAASILDMSQSTLRRAV 42 P +AGLRAF AVA KQ F SAA+ L +SQSTL +A+ Sbjct 16 PTLAGLRAFVAVAEKQHFGSAANALGVSQSTLSQAL 51 >gi|333990604|ref|YP_004523218.1| hydrogen peroxide-inducible genes activator OxyR [Mycobacterium sp. JDM601] gi|333486572|gb|AEF35964.1| hydrogen peroxide-inducible genes activator OxyR [Mycobacterium sp. JDM601] Length=311 Score = 57.4 bits (137), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 57/139 (42%), Positives = 68/139 (49%), Gaps = 26/139 (18%) Query 51 PRACLSGKQRVPLTALSELTLLXLHEGHCLRDQTLDAAQHPGGVAGHRRAVRDRRA---- 106 P L+GK+RV AL++L LL L EGHCLRDQ LD ++ AG R + + RA Sbjct 178 PGHALAGKRRVAPAALADLPLLLLDEGHCLRDQALDICRN----AGVRAQLANTRAASLG 233 Query 107 -------GG-------DTDSADRGRRRDHAKPAGTRPIRRPCPARRIGLVFSSFGGREKS 152 GG T A R A P P RRIGLVF + GRE S Sbjct 234 TAVQCVTGGLGVTLIPQTAVAVEAERSGLALAY----FAAPRPGRRIGLVFRTSSGREDS 289 Query 153 YQRLAGIIGKLIRGDRQVR 171 Y+RLAGIIG +I QV Sbjct 290 YRRLAGIIGDVIAAQHQVE 308 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/62 (49%), Positives = 37/62 (60%), Gaps = 0/62 (0%) Query 7 PAVAGLRAFAAVAAKQWFSSAASILDMSQSTLRRAVVGSRSRCTPRACLSGKQRVPLTAL 66 P +AGLRAFAAVA K FS AA+ L +SQSTL +A+ S + +RV LTA Sbjct 8 PTLAGLRAFAAVAEKHHFSLAAAGLGLSQSTLSQALSSLESGLGIQLIERSTRRVFLTAE 67 Query 67 SE 68 E Sbjct 68 GE 69 >gi|169631484|ref|YP_001705133.1| hydrogen peroxide-inducible genes activator [Mycobacterium abscessus ATCC 19977] gi|169243451|emb|CAM64479.1| Probable hydrogen peroxide-inducible genes activator [Mycobacterium abscessus] Length=312 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 43/120 (36%), Positives = 59/120 (50%), Gaps = 10/120 (8%) Query 55 LSGKQRVPLTALSELTLLXLHEGHCLRDQTLDAAQHPG--GVAGHRRAVRDRRA-----G 107 L+G + V L+++ LL L EGHCLRDQ L+ Q G GH RA A G Sbjct 182 LAGSKNVEPADLADMPLLLLDEGHCLRDQALEVCQLAGVRPDLGHTRAASLATAVQCVEG 241 Query 108 GDTDSADRGRRRDHAKPAG---TRPIRRPCPARRIGLVFSSFGGREKSYQRLAGIIGKLI 164 G + G +G T P P RRIGLV+ + RE +Y+RLA ++ +L+ Sbjct 242 GLGVTLIPGTAVTAETASGGLATATFAAPVPGRRIGLVYRAISAREDAYRRLAELLTRLV 301 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/36 (53%), Positives = 25/36 (70%), Gaps = 0/36 (0%) Query 7 PAVAGLRAFAAVAAKQWFSSAASILDMSQSTLRRAV 42 P V GLRAF A+A K+ F SAA L +SQ +L +A+ Sbjct 8 PTVVGLRAFVAIARKRHFGSAAGELGVSQPSLSQAL 43 >gi|6225813|sp|O87324.1|OXYR_MYCMR RecName: Full=Probable hydrogen peroxide-inducible genes activator gi|3650469|gb|AAC61302.1| OxyR [Mycobacterium marinum] Length=311 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 52/136 (39%), Positives = 70/136 (52%), Gaps = 28/136 (20%) Query 55 LSGKQRVPLTALSELTLLXLHEGHCLRDQTLDAAQHPGGVAGHRRAVRDRRA-------- 106 ++ + VP+ ALSEL LL L EGHCLRDQ LD Q+ AG R + D RA Sbjct 182 MADRHGVPVAALSELPLLLLDEGHCLRDQALDVCQN----AGVRAELADTRAASLATAVQ 237 Query 107 ---GG--------DTDSADRGRRRDHAKPAGTRPIRRPCPARRIGLVFSSFGGREKSYQR 155 GG S + R R G P P RRIGLV+ + GR+++Y++ Sbjct 238 CVNGGLGVTLIPQSAVSVEAARSR-----VGLAHFAAPTPGRRIGLVYRASSGRDEAYRQ 292 Query 156 LAGIIGKLIRGDRQVR 171 LA I+G+ I ++QVR Sbjct 293 LAAIMGESIGNEQQVR 308 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/36 (64%), Positives = 28/36 (78%), Gaps = 0/36 (0%) Query 7 PAVAGLRAFAAVAAKQWFSSAASILDMSQSTLRRAV 42 P +AGLRAF AVA KQ F SAA+ L +SQSTL +A+ Sbjct 8 PTLAGLRAFVAVAEKQHFGSAANALGVSQSTLSQAL 43 >gi|240170514|ref|ZP_04749173.1| hydrogen peroxide-inducible genes activator, OxyR [Mycobacterium kansasii ATCC 12478] Length=318 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 55/135 (41%), Positives = 71/135 (53%), Gaps = 18/135 (13%) Query 51 PRACLSGKQRVPLTALSELTLLXLHEGHCLRDQTLDAAQHPGGVAGHRRAVRDRRAG--- 107 P L+GK+RVP AL++L LL L EGHCLRDQ LD AG R + D RA Sbjct 178 PGHPLAGKRRVPAAALAQLPLLLLDEGHCLRDQALDVCHK----AGVRVELADTRAASLA 233 Query 108 ----------GDTDSADRGRRRDHAKP-AGTRPIRRPCPARRIGLVFSSFGGREKSYQRL 156 G T + A+ AG P P RRIGLV+ S GR++SY+RL Sbjct 234 TAIQCVAGGLGVTLIPQSAVAVEAARSRAGLAHFGAPRPGRRIGLVYRSSTGRDESYRRL 293 Query 157 AGIIGKLIRGDRQVR 171 A IIG+++ ++ VR Sbjct 294 ARIIGEVVVAEQPVR 308 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/67 (48%), Positives = 40/67 (60%), Gaps = 10/67 (14%) Query 7 PAVAGLRAFAAVAAKQWFSSAASILDMSQSTLRRAVVGSRS--------RCTPRACLS-- 56 P +AGLRAF AVA KQ FSSAA+ L +SQSTL +A+ + R T R L+ Sbjct 8 PTLAGLRAFVAVANKQHFSSAATTLGVSQSTLSQALAALETGLGAHLVERSTRRVLLTAE 67 Query 57 GKQRVPL 63 G Q +PL Sbjct 68 GMQLLPL 74 >gi|41407688|ref|NP_960524.1| OxyR [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396041|gb|AAS03907.1| OxyR [Mycobacterium avium subsp. paratuberculosis K-10] Length=325 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/120 (41%), Positives = 60/120 (50%), Gaps = 19/120 (15%) Query 55 LSGKQRVPLTALSELTLLXLHEGHCLRDQTLDAAQHPGGVAGHRRAVRDRRAGGDTDSAD 114 L+GK+RVP TAL++L LL L EGHCLRDQ LD AG R + + RA + Sbjct 201 LAGKRRVPATALADLPLL-LDEGHCLRDQALDVCHK----AGVRAELANTRAASLATAVQ 255 Query 115 --RGRRRDHAKPAGTRPIR------------RPCPARRIGLVFSSFGGREKSYQRLAGII 160 G P P+ P P RRIGLVF S GR+ SY+ LAG+I Sbjct 256 CVTGGLGVTLIPQSAVPVEASRSRLGLAQFAAPRPGRRIGLVFRSSSGRDDSYRELAGLI 315 Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/36 (62%), Positives = 28/36 (78%), Gaps = 0/36 (0%) Query 7 PAVAGLRAFAAVAAKQWFSSAASILDMSQSTLRRAV 42 P +AGLRAF AVA K+ FS AA+ L +SQSTL +A+ Sbjct 27 PTIAGLRAFVAVAEKRQFSGAATALGVSQSTLSQAL 62 >gi|8134621|sp|O87883.1|OXYR_MYCXE RecName: Full=Probable hydrogen peroxide-inducible genes activator gi|3650450|gb|AAC61664.1| OxyR [Mycobacterium xenopi] Length=189 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/58 (54%), Positives = 37/58 (64%), Gaps = 0/58 (0%) Query 7 PAVAGLRAFAAVAAKQWFSSAASILDMSQSTLRRAVVGSRSRCTPRACLSGKQRVPLT 64 P +AGLRAFAAVA KQ F SAAS L ++QSTL +A+ G S R +RV LT Sbjct 8 PTLAGLRAFAAVAEKQHFGSAASALGVNQSTLSQALAGLESGLGVRLIERSTRRVFLT 65 >gi|209963775|ref|YP_002296690.1| hydrogen peroxide-inducible genes activator protein [Rhodospirillum centenum SW] gi|209957241|gb|ACI97877.1| hydrogen peroxide-inducible genes activator protein [Rhodospirillum centenum SW] Length=301 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/117 (36%), Positives = 53/117 (46%), Gaps = 9/117 (7%) Query 55 LSGKQRVPLTALSELTLLXLHEGHCLRDQTLD------AAQHPGGVAGHRRAVRDRRAGG 108 LS + V + LS LL L +GHC RDQ LD A + PG A + + AGG Sbjct 178 LSERTAVRQSDLSGEVLLLLEDGHCFRDQALDVCRLSGAREDPGFAATSLPTLVEMVAGG 237 Query 109 DTDSADRGRRRDHAKPAG---TRPIRRPCPARRIGLVFSSFGGREKSYQRLAGIIGK 162 + R AG RP P P RR+GLV+ RE QRLAG + + Sbjct 238 LGLTLLPARAAPLLTAAGQVVLRPFVAPVPVRRVGLVWRRGSVREADLQRLAGHLAE 294 >gi|269128437|ref|YP_003301807.1| LysR family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268313395|gb|ACY99769.1| transcriptional regulator, LysR family [Thermomonospora curvata DSM 43183] Length=309 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/120 (33%), Positives = 48/120 (40%), Gaps = 16/120 (13%) Query 51 PRACLSGKQRVPLTALSELTLLXLHEGHCLRDQTLDAAQHPGGVAGHRRAVRDRRAGGDT 110 PRA G + VP L+EL +L L+EGHCLRDQ LD + G A Sbjct 175 PRALEIGPEPVPRKVLTELDVLLLNEGHCLRDQALDLCREVGAQATAATYAASLATLVQL 234 Query 111 DSADRGRRRDHAKPAGTRPIRR-------------PCPARRIGLVFSSFGGREKSYQRLA 157 S G P T P+ P P RRIGL + R + +Q LA Sbjct 235 VSGGLGV---TLLPQTTLPVETRRADGLAVYRFADPAPYRRIGLAYRETSPRVEEFQALA 291 Score = 35.0 bits (79), Expect = 4.4, Method: Compositional matrix adjust. Identities = 23/58 (40%), Positives = 28/58 (49%), Gaps = 0/58 (0%) Query 7 PAVAGLRAFAAVAAKQWFSSAASILDMSQSTLRRAVVGSRSRCTPRACLSGKQRVPLT 64 P VA LRAF A+A F AA++L MSQ L AV R ++V LT Sbjct 6 PTVAQLRAFLALAEYLHFRDAAAVLGMSQPALSGAVAALEQTLNTRLVERTTRKVLLT 63 >gi|291451526|ref|ZP_06590916.1| hydrogen peroxide sensing regulator [Streptomyces albus J1074] gi|291354475|gb|EFE81377.1| hydrogen peroxide sensing regulator [Streptomyces albus J1074] Length=321 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/122 (34%), Positives = 54/122 (45%), Gaps = 11/122 (9%) Query 55 LSGKQRVPLTALSELTLLXLHEGHCLRDQTLDAAQHPG--------GVAGHRRAVRDRRA 106 L G++ VP AL E+ LL L EGHCLRDQ LD + G AG V+ Sbjct 191 LGGREGVPREALREVDLLLLDEGHCLRDQALDVCRDAGRTDRPVTTSAAGLATLVQLVAG 250 Query 107 GGDTDSADRGRRRDHAKPAG---TRPIRRPCPARRIGLVFSSFGGREKSYQRLAGIIGKL 163 G R + A + T P P+RR+GLV S R Y+ LA + + Sbjct 251 GLGVTLLPRTALKVEAGRSSQLLTGTFTDPAPSRRVGLVLRSGAARTHEYEELAAALREA 310 Query 164 IR 165 +R Sbjct 311 LR 312 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 21/40 (53%), Positives = 24/40 (60%), Gaps = 0/40 (0%) Query 3 AKRCPAVAGLRAFAAVAAKQWFSSAASILDMSQSTLRRAV 42 A + P +A LRAFAAVA F AA+ L MSQ L AV Sbjct 13 AAKGPTLAQLRAFAAVAEHLHFRDAAAALGMSQPALSGAV 52 >gi|312139410|ref|YP_004006746.1| lysr family transcriptional regulator [Rhodococcus equi 103S] gi|325672703|ref|ZP_08152399.1| oxidative stress regulatory protein OxyR [Rhodococcus equi ATCC 33707] gi|311888749|emb|CBH48061.1| LysR family transcriptional regulator [Rhodococcus equi 103S] gi|325556580|gb|EGD26246.1| oxidative stress regulatory protein OxyR [Rhodococcus equi ATCC 33707] Length=309 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/123 (40%), Positives = 62/123 (51%), Gaps = 22/123 (17%) Query 54 CLSGKQRVPLTALSELTLLXLHEGHCLRDQTLDAAQ----HPGGVAGHRRA-----VRDR 104 +G+ +PL L EL LL L EGHCLRDQTLD + HP ++G RA V Sbjct 181 VFAGRDDLPLQVLDELPLLLLDEGHCLRDQTLDLCRSVDAHP--LSGDTRATSLATVVQC 238 Query 105 RAGG-------DTDSADRGRRRDHAKPAGTRPIRRPCPARRIGLVFSSFGGREKSYQRLA 157 AGG D+ RR D GT P P R +GLVF + GR + Y++LA Sbjct 239 VAGGLGVTLVPDSAVPVETRRGD----LGTARFAAPAPGRTVGLVFRASSGRAEGYRQLA 294 Query 158 GII 160 G++ Sbjct 295 GLL 297 >gi|111023758|ref|YP_706730.1| LysR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110823288|gb|ABG98572.1| transcriptional regulator, LysR family protein [Rhodococcus jostii RHA1] Length=307 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/99 (40%), Positives = 46/99 (47%), Gaps = 14/99 (14%) Query 76 EGHCLRDQTLD----AAQHPGGVAGHRRA-----VRDRRAG--GDTDSADRGRRRDHAK- 123 EGHCLRDQTLD HP VAG RA V AG G T + + + + Sbjct 203 EGHCLRDQTLDLCRSVDAHP--VAGDTRATSLSTVVQCVAGGLGVTLVPESAVQVETGRG 260 Query 124 PAGTRPIRRPCPARRIGLVFSSFGGREKSYQRLAGIIGK 162 P T P P R IGLVF S R Y +LA ++ K Sbjct 261 PLATARFAAPAPGRTIGLVFRSSSARADGYGQLAALLTK 299 >gi|12150266|gb|AAG49024.1|U43811_2 OxyR [Mycobacterium marinum] Length=196 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/36 (64%), Positives = 28/36 (78%), Gaps = 0/36 (0%) Query 7 PAVAGLRAFAAVAAKQWFSSAASILDMSQSTLRRAV 42 P +AGLRAF AVA KQ F SAA+ L +SQSTL +A+ Sbjct 8 PTLAGLRAFVAVAEKQHFGSAANALGVSQSTLSQAL 43 >gi|54025758|ref|YP_120000.1| putative hydrogen peroxide sensing transcriptional regulator [Nocardia farcinica IFM 10152] gi|54017266|dbj|BAD58636.1| putative hydrogen peroxide sensing transcriptional regulator [Nocardia farcinica IFM 10152] Length=302 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 37/101 (37%), Positives = 45/101 (45%), Gaps = 21/101 (20%) Query 76 EGHCLRDQTLDAAQHPGGVAGHRRAVRDRRAG-------------GDTDSADRGRRRDHA 122 EGHCLRDQTL+ + V AV D RA G T + + A Sbjct 201 EGHCLRDQTLELCRS---VEVDPLAVGDTRAASLATVVQCVAGGLGVTLIPEMAVEAETA 257 Query 123 KPAGTRPIRR---PCPARRIGLVFSSFGGREKSYQRLAGII 160 + GT + R P P R IGLVF S R + Y+ LA II Sbjct 258 R--GTLDVARFSAPAPGRTIGLVFRSSSARAQDYEYLAAII 296 >gi|302206352|gb|ADL10694.1| Transcriptional activator protein lysR [Corynebacterium pseudotuberculosis C231] gi|308276594|gb|ADO26493.1| Transcriptional activator protein lysR [Corynebacterium pseudotuberculosis I19] gi|341825038|gb|AEK92559.1| Transcriptional activator protein lysR [Corynebacterium pseudotuberculosis PAT10] Length=313 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 32/122 (27%), Positives = 54/122 (45%), Gaps = 14/122 (11%) Query 55 LSGKQRVPLTALSELTLLXLHEGHCLRDQTLDAAQHPGGVAGHRRAVRDRRAG------- 107 +G+ + L++L EL L+ L +GHCL DQ +D + + + R A Sbjct 182 FAGRNDLTLSSLRELDLILLDDGHCLHDQIVDLCKQVDINPARSKNAKMRAASLTTVMQL 241 Query 108 -----GDTDSADRGRRRDHAKP--AGTRPIRRPCPARRIGLVFSSFGGREKSYQRLAGII 160 G T + + A+P A +R++GLVF + R + YQ+L I+ Sbjct 242 VGAGLGSTLVPESSISIECARPNVATASFAHEVTASRQVGLVFRASSTRTEEYQKLGSIV 301 Query 161 GK 162 G+ Sbjct 302 GQ 303 Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust. Identities = 16/38 (43%), Positives = 24/38 (64%), Gaps = 0/38 (0%) Query 7 PAVAGLRAFAAVAAKQWFSSAASILDMSQSTLRRAVVG 44 P +A LR F +A + F SAA+ L +SQ +L +A+V Sbjct 8 PTLAQLRTFVTIAENKHFGSAAAKLSISQPSLSQALVA 45 >gi|300858645|ref|YP_003783628.1| LysR family transcriptional regulator [Corynebacterium pseudotuberculosis FRC41] gi|300686099|gb|ADK29021.1| LysR-family transcription regulator [Corynebacterium pseudotuberculosis FRC41] gi|302330908|gb|ADL21102.1| Transcriptional activator protein lysR [Corynebacterium pseudotuberculosis 1002] Length=313 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 32/122 (27%), Positives = 54/122 (45%), Gaps = 14/122 (11%) Query 55 LSGKQRVPLTALSELTLLXLHEGHCLRDQTLDAAQHPGGVAGHRRAVRDRRAG------- 107 +G+ + L++L EL L+ L +GHCL DQ +D + + + R A Sbjct 182 FAGRNDLTLSSLRELDLILLDDGHCLHDQIVDLCKQVDINPARSKNAKMRAASLTTVMQL 241 Query 108 -----GDTDSADRGRRRDHAKP--AGTRPIRRPCPARRIGLVFSSFGGREKSYQRLAGII 160 G T + + A+P A +R++GLVF + R + YQ+L I+ Sbjct 242 VGAGLGSTLVPESSISIECARPNVATASFAHEVTASRQVGLVFRASSTRTEEYQKLGSIV 301 Query 161 GK 162 G+ Sbjct 302 GQ 303 Score = 33.9 bits (76), Expect = 7.9, Method: Compositional matrix adjust. Identities = 16/38 (43%), Positives = 24/38 (64%), Gaps = 0/38 (0%) Query 7 PAVAGLRAFAAVAAKQWFSSAASILDMSQSTLRRAVVG 44 P +A LR F +A + F SAA+ L +SQ +L +A+V Sbjct 8 PTLAQLRTFVTIAENKHFGSAAAKLSISQPSLSQALVA 45 >gi|229490873|ref|ZP_04384708.1| putative hydrogen peroxide-inducible genes activator [Rhodococcus erythropolis SK121] gi|229322263|gb|EEN88049.1| putative hydrogen peroxide-inducible genes activator [Rhodococcus erythropolis SK121] Length=360 Score = 42.0 bits (97), Expect = 0.035, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 48/100 (48%), Gaps = 22/100 (22%) Query 77 GHCLRDQTLD----AAQHPGGVAGHRRA-----VRDRRAGG-------DTDSADRGRRRD 120 GHCLRDQTLD HP +AG RA V AGG ++ A RR D Sbjct 258 GHCLRDQTLDLCRSVDAHP--LAGDTRATSLATVVQCVAGGLGVTLVPESAVAVEVRRGD 315 Query 121 HAKPAGTRPIRRPCPARRIGLVFSSFGGREKSYQRLAGII 160 + T P P R IG+VF S GR + +++LA ++ Sbjct 316 LS----TAHFASPAPGRTIGVVFRSSSGRAEGFRQLAELV 351 >gi|226306275|ref|YP_002766235.1| oxidative stress response regulatory protein OxyR [Rhodococcus erythropolis PR4] gi|226185392|dbj|BAH33496.1| putative oxidative stress response regulatory protein OxyR [Rhodococcus erythropolis PR4] Length=306 Score = 41.6 bits (96), Expect = 0.047, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 48/100 (48%), Gaps = 22/100 (22%) Query 77 GHCLRDQTLD----AAQHPGGVAGHRRA-----VRDRRAGG-------DTDSADRGRRRD 120 GHCLRDQTLD HP +AG RA V AGG ++ A RR D Sbjct 204 GHCLRDQTLDLCRSVDAHP--LAGDTRATSLATVVQCVAGGLGVTLVPESAVAVEVRRGD 261 Query 121 HAKPAGTRPIRRPCPARRIGLVFSSFGGREKSYQRLAGII 160 + T P P R IG+VF S GR + +++LA ++ Sbjct 262 LS----TAHFASPAPGRTIGVVFRSSSGRAEGFRQLAELV 297 >gi|226366194|ref|YP_002783977.1| oxidative stress response regulatory protein OxyR [Rhodococcus opacus B4] gi|226244684|dbj|BAH55032.1| putative oxidative stress response regulatory protein OxyR [Rhodococcus opacus B4] Length=307 Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust. Identities = 39/105 (38%), Positives = 44/105 (42%), Gaps = 24/105 (22%) Query 77 GHCLRDQTLD----AAQHPGGVAGHRRA-----VRDRRAGG--------DTDSADRGRRR 119 GHCLRDQTLD HP VAG RA V AGG + + GR Sbjct 204 GHCLRDQTLDLCRSVDAHP--VAGDTRATSLSTVVQCVAGGLGVTLVPESAVAVETGR-- 259 Query 120 DHAKPAGTRPIRRPCPARRIGLVFSSFGGREKSYQRLAGIIGKLI 164 P T P P R IGLVF S R Y +LA + K + Sbjct 260 ---GPLATARFAAPAPGRTIGLVFRSSSARADDYGQLARLFTKTL 301 >gi|330828662|ref|YP_004391614.1| hydrogen peroxide-inducible genes activator [Aeromonas veronii B565] gi|328803798|gb|AEB48997.1| Hydrogen peroxide-inducible genes activator [Aeromonas veronii B565] Length=299 Score = 40.4 bits (93), Expect = 0.11, Method: Compositional matrix adjust. Identities = 35/115 (31%), Positives = 49/115 (43%), Gaps = 11/115 (9%) Query 60 RVPLTALSELTLLXLHEGHCLRDQTLDAAQHPGGVAGHRR-------AVRDRRAGGD--T 110 +VPL L LL L +GHCLRDQ + GG+ +R +R+ A G T Sbjct 180 QVPLGNLKGKKLLMLADGHCLRDQAMGFC-FAGGIGEDQRFKGTSLETLRNMVAAGSGMT 238 Query 111 DSADRGRRRDHAK-PAGTRPIRRPCPARRIGLVFSSFGGREKSYQRLAGIIGKLI 164 DH + RP+ P P R I L++ + R + LA I L+ Sbjct 239 LVPKLAVPADHDEGGVSYRPVVDPVPGRTISLLYRHYSVRRPCFNELAASIATLM 293 >gi|307257551|ref|ZP_07539314.1| Hydrogen peroxide-inducible proteins activator [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306863952|gb|EFM95872.1| Hydrogen peroxide-inducible proteins activator [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length=297 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 31/119 (27%), Positives = 52/119 (44%), Gaps = 6/119 (5%) Query 56 SGKQRVPLTALSELTLLXLHEGHCLRDQTLD------AAQHPGGVAGHRRAVRDRRAGGD 109 S K ++ ++ L + LL L +GHCLR QTLD A + A + +R+ A Sbjct 176 SHKSKMDISYLKDKELLFLDDGHCLRTQTLDYCLSVGAKESTHFKATNLETLRNMVAANV 235 Query 110 TDSADRGRRRDHAKPAGTRPIRRPCPARRIGLVFSSFGGREKSYQRLAGIIGKLIRGDR 168 S G + P P R +GL++ Y+RLA + K+++ ++ Sbjct 236 GMSLIPGLAAKPCEGLNYLTFDEPKPYRTVGLIYRPGSPLRIRYERLAKEVSKIMKQEK 294 >gi|90418681|ref|ZP_01226592.1| putative transcriptional regulator, possibly inducible by hydrogen peroxide [Aurantimonas manganoxydans SI85-9A1] gi|90336761|gb|EAS50466.1| putative transcriptional regulator, possibly inducible by hydrogen peroxide [Aurantimonas manganoxydans SI85-9A1] Length=300 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 36/115 (32%), Positives = 48/115 (42%), Gaps = 17/115 (14%) Query 59 QRVPLTALSELTLLXLHEGHCLRDQTL------DAAQHPGGVAGHRRAVRDRRAGGDTDS 112 Q VPL+AL L+ L EGHCLR Q L DA + G A + +GG + Sbjct 180 QPVPLSALRNERLILLEEGHCLRAQALDICRIADAGEMAGLGATSLTTILRMVSGGLGAT 239 Query 113 ADRGRRRDHAKPAGTR-------PIRRPCPARRIGLVFSSFGGREKSYQRLAGII 160 + A P TR P P P R I L F R + ++ LA ++ Sbjct 240 L----IPEMAIPDETRSGGIAILPFEAPTPYRTIALAFRPSTARRRDFEALADLL 290 >gi|261493515|ref|ZP_05990036.1| LysR family transcriptional regulator [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495960|ref|ZP_05992376.1| LysR family transcriptional regulator [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308366|gb|EEY09653.1| LysR family transcriptional regulator [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310811|gb|EEY11993.1| LysR family transcriptional regulator [Mannheimia haemolytica serotype A2 str. BOVINE] Length=294 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 30/115 (27%), Positives = 48/115 (42%), Gaps = 6/115 (5%) Query 59 QRVPLTALSELTLLXLHEGHCLRDQTLD------AAQHPGGVAGHRRAVRDRRAGGDTDS 112 ++ + L LL L GHCLR TLD A ++P A + +R+ A + Sbjct 179 KKFDMNLLKNRELLFLDSGHCLRTNTLDYCLSIGAKENPHFKATNLETLRNMVAANVGLA 238 Query 113 ADRGRRRDHAKPAGTRPIRRPCPARRIGLVFSSFGGREKSYQRLAGIIGKLIRGD 167 K P+ P P R +G+V+ Y+RLA I K+++ + Sbjct 239 LIPKLAAKPIKGVHYIPLENPKPFRAVGMVYRPGSPLRARYERLAQAITKIMQSE 293 >gi|254363242|ref|ZP_04979290.1| LysR family transcriptional regulator [Mannheimia haemolytica PHL213] gi|153095139|gb|EDN75686.1| LysR family transcriptional regulator [Mannheimia haemolytica PHL213] Length=294 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 29/103 (29%), Positives = 44/103 (43%), Gaps = 6/103 (5%) Query 71 LLXLHEGHCLRDQTLD------AAQHPGGVAGHRRAVRDRRAGGDTDSADRGRRRDHAKP 124 LL L GHCLR TLD A ++P A + +R+ A + K Sbjct 191 LLFLDSGHCLRTNTLDYCLSIGAKENPHFKATNLETLRNMVAANVGLALIPKLAAKPIKG 250 Query 125 AGTRPIRRPCPARRIGLVFSSFGGREKSYQRLAGIIGKLIRGD 167 P+ P P R +G+V+ Y+RLA I K+++ + Sbjct 251 VHYIPLENPKPFRAVGMVYRPGSPLRARYERLAQAITKIMQSE 293 >gi|117620885|ref|YP_857687.1| hydrogen peroxide-inducible genes activator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562292|gb|ABK39240.1| hydrogen peroxide-inducible genes activator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length=343 Score = 38.9 bits (89), Expect = 0.28, Method: Compositional matrix adjust. Identities = 34/115 (30%), Positives = 51/115 (45%), Gaps = 11/115 (9%) Query 61 VPLTALSELTLLXLHEGHCLRDQTLDAAQHPGGVAGHRR-------AVRDRRAGGD-TDS 112 VPL+ L LL L +GHCLRDQ + G+ +R +R+ A G Sbjct 226 VPLSNLKGKKLLMLADGHCLRDQAMGFC-FAAGIGEDQRFKGTSLETLRNMVAAGSGMTL 284 Query 113 ADRGRRRDHAKPAGT--RPIRRPCPARRIGLVFSSFGGREKSYQRLAGIIGKLIR 165 R +A+ G RP+ P P R I L++ + R + LA I +L++ Sbjct 285 VPRLAVPANAEEGGVSYRPVIDPVPGRTIALLYRHYSVRRPCFNELAARISRLMQ 339 >gi|158314124|ref|YP_001506632.1| LysR family transcriptional regulator [Frankia sp. EAN1pec] gi|158109529|gb|ABW11726.1| transcriptional regulator, LysR family [Frankia sp. EAN1pec] Length=320 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 37/124 (30%), Positives = 53/124 (43%), Gaps = 14/124 (11%) Query 55 LSGKQRVPLTALSELTLLXLHEGHCLRDQTLDAAQHPGGVAGHRRAVR--------DRRA 106 ++G +P+++L LL L +GHC R Q LD + G A R A+R A Sbjct 180 MAGSAALPVSSLCGRDLLLLEDGHCFRAQALDVCREAG--ARERSALRAASLSTIVQMVA 237 Query 107 GG----DTDSADRGRRRDHAKPAGTRPIRRPCPARRIGLVFSSFGGREKSYQRLAGIIGK 162 GG +A G + T R P P RRIGL + + R + LA I + Sbjct 238 GGLGLTLIPAAAVGVEVGEGRGLATATFRNPAPRRRIGLAYRTTSARVADWTLLAAEIRE 297 Query 163 LIRG 166 + G Sbjct 298 ALPG 301 >gi|260595988|ref|YP_003208559.1| DNA-binding transcriptional regulator OxyR [Cronobacter turicensis z3032] gi|260215165|emb|CBA26979.1| Hydrogen peroxide-inducible genes activator [Cronobacter turicensis z3032] Length=305 Score = 38.5 bits (88), Expect = 0.37, Method: Compositional matrix adjust. Identities = 39/123 (32%), Positives = 54/123 (44%), Gaps = 15/123 (12%) Query 56 SGKQRVPLTALSELTLLXLHEGHCLRDQTLDAAQHPGGVAG-HRRA-----VRDRRAGGD 109 +G++RVP+ L+ LL L +GHCLRDQ + G H RA +R+ A G Sbjct 176 AGRERVPMGELAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTHFRATSLETLRNMVAAGS 235 Query 110 ------TDSADRGRRRDHAKPAGTRPIRRPCPARRIGLVFSSFGGREKSYQRLAGIIGKL 163 + R RD P +P P R IGLV+ Y++LA I K Sbjct 236 GITLLPALAVPPERHRDGVV---YLPCVKPEPRRTIGLVYRPGSPLRSRYEQLAEAIRKQ 292 Query 164 IRG 166 + G Sbjct 293 MDG 295 >gi|145298146|ref|YP_001140987.1| hydrogen peroxide-inducible genes activator [Aeromonas salmonicida subsp. salmonicida A449] gi|142850918|gb|ABO89239.1| hydrogen peroxide-inducible genes activator [Aeromonas salmonicida subsp. salmonicida A449] Length=298 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 34/115 (30%), Positives = 50/115 (44%), Gaps = 11/115 (9%) Query 61 VPLTALSELTLLXLHEGHCLRDQTLDAAQHPGGVAGHRR-------AVRDRRAGGD-TDS 112 VPL+ L LL L +GHCLRDQ + G+ +R +R+ A G Sbjct 181 VPLSNLKGKKLLMLADGHCLRDQAMGFC-FAAGIGEDQRFKGTSLETLRNMVAAGSGMTL 239 Query 113 ADRGRRRDHAKPAGT--RPIRRPCPARRIGLVFSSFGGREKSYQRLAGIIGKLIR 165 R +A+ G RP+ P P R I L++ + R + LA I L++ Sbjct 240 VPRLAVPANAEEGGVSYRPVVDPVPGRTISLLYRHYSVRRPCFNELASRISTLMK 294 >gi|38234006|ref|NP_939773.1| putative transcriptional regulator [Corynebacterium diphtheriae NCTC 13129] gi|38200268|emb|CAE49952.1| Putative transcriptional regulator [Corynebacterium diphtheriae] Length=312 Score = 38.1 bits (87), Expect = 0.48, Method: Compositional matrix adjust. Identities = 32/123 (27%), Positives = 52/123 (43%), Gaps = 22/123 (17%) Query 62 PLTALSELTLLXLHE--------GHCLRDQTLDAAQHPGGVAGHRRAVRDRRAG------ 107 PL ++LTL L E GHCLRDQ +D +H H +A R A Sbjct 181 PLAHRNDLTLSHLKELDLLLLDDGHCLRDQIVDLCRHVDVNPTHSKAAETRAASLTTVMQ 240 Query 108 ------GDTDSADRGRRRDHAKPAGTRPIRRP--CPARRIGLVFSSFGGREKSYQRLAGI 159 G T + + ++P P +R++G+V+ + R + +Q+L I Sbjct 241 LVSAGMGATLVPESSVSIECSRPGLATATFAPEVSASRQVGMVYRTSSSRTEEFQKLGSI 300 Query 160 IGK 162 +G+ Sbjct 301 VGQ 303 >gi|227488730|ref|ZP_03919046.1| hydrogen peroxide sensing regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227542273|ref|ZP_03972322.1| hydrogen peroxide sensing regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227091152|gb|EEI26464.1| hydrogen peroxide sensing regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227181934|gb|EEI62906.1| hydrogen peroxide sensing regulator [Corynebacterium glucuronolyticum ATCC 51866] Length=314 Score = 38.1 bits (87), Expect = 0.49, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 24/32 (75%), Gaps = 0/32 (0%) Query 55 LSGKQRVPLTALSELTLLXLHEGHCLRDQTLD 86 L+G + + +TAL++ LL L +GHCLRDQ +D Sbjct 184 LAGAKNLKITALNDTELLLLDDGHCLRDQIID 215 >gi|74318341|ref|YP_316081.1| oxidative stress transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74057836|gb|AAZ98276.1| oxidative stress transcriptional regulator [Thiobacillus denitrificans ATCC 25259] Length=301 Score = 38.1 bits (87), Expect = 0.52, Method: Compositional matrix adjust. Identities = 36/107 (34%), Positives = 46/107 (43%), Gaps = 24/107 (22%) Query 71 LLXLHEGHCLRDQTLDAAQHPGGVAGHRRAVRD------RRAGG-----------DTDSA 113 LL L EGHCLR+Q LD G + R VR R+ G D+A Sbjct 191 LLLLDEGHCLREQALDVC---GARSSGREEVRATSLETLRQMVGMGLGLTLLPALAVDAA 247 Query 114 DRGRRRDHAKPAGTRPIRRPCPARRIGLVFSSFGGREKSYQRLAGII 160 R R K RP R P P R IGLV+ ++++RLA + Sbjct 248 PRQTR----KLVEIRPFRSPPPGRTIGLVWRRRAPFPETFERLAATL 290 >gi|85060136|ref|YP_455838.1| DNA-binding transcriptional regulator OxyR [Sodalis glossinidius str. 'morsitans'] gi|84780656|dbj|BAE75433.1| hydrogen peroxide-inducible regulon activator [Sodalis glossinidius str. 'morsitans'] Length=305 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 37/117 (32%), Positives = 52/117 (45%), Gaps = 15/117 (12%) Query 56 SGKQRVPLTALSELTLLXLHEGHCLRDQTLDAAQHPGGVAG-HRRA-----VRDRRAGGD 109 + + RVP++ L+ LL L +GHCLRDQ + G H RA +R+ A G Sbjct 176 ADRDRVPMSDLAGERLLMLEDGHCLRDQAMGFCFQAGADEDTHFRATSLETLRNMVAAGS 235 Query 110 ------TDSADRGRRRDHAKPAGTRPIRRPCPARRIGLVFSSFGGREKSYQRLAGII 160 + + R R+RD P RP P R I LV+ Y++LA I Sbjct 236 GITLLPSLAVPRERKRDG---VCYLPCYRPEPKRTIALVYRPGSPLRARYEQLADCI 289 >gi|326384471|ref|ZP_08206151.1| LysR substrate-binding protein [Gordonia neofelifaecis NRRL B-59395] gi|326196816|gb|EGD54010.1| LysR substrate-binding protein [Gordonia neofelifaecis NRRL B-59395] Length=318 Score = 37.7 bits (86), Expect = 0.63, Method: Compositional matrix adjust. Identities = 31/102 (31%), Positives = 42/102 (42%), Gaps = 18/102 (17%) Query 77 GHCLRDQTLDAAQHPGGVAGHRRAVRDRRAGGDTDSAD--------------RGRRRDHA 122 GHCLRDQ L+ Q +AG +R RA T + A Sbjct 204 GHCLRDQALEVCQ----LAGVSPDLRQTRAASLTTAVQCVEGGLGVTLIPQTAVAVETAA 259 Query 123 KPAGTRPIRRPCPARRIGLVFSSFGGREKSYQRLAGIIGKLI 164 T P P R+IGLV+ GR ++Y+ LA I +L+ Sbjct 260 GSLATAEFAHPRPGRKIGLVYRESSGRGEAYRALAAEIAELV 301 >gi|154248142|ref|YP_001419100.1| LysR family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154162227|gb|ABS69443.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus Py2] Length=302 Score = 37.7 bits (86), Expect = 0.68, Method: Compositional matrix adjust. Identities = 17/39 (44%), Positives = 23/39 (59%), Gaps = 0/39 (0%) Query 55 LSGKQRVPLTALSELTLLXLHEGHCLRDQTLDAAQHPGG 93 L+ + + +T LS L+ L +GHCLRDQ LD Q G Sbjct 175 LASRDNLSITELSRYNLMLLEDGHCLRDQALDVCQMAGA 213 >gi|218195571|gb|EEC77998.1| hypothetical protein OsI_17389 [Oryza sativa Indica Group] Length=305 Score = 37.4 bits (85), Expect = 0.77, Method: Compositional matrix adjust. Identities = 37/117 (32%), Positives = 51/117 (44%), Gaps = 15/117 (12%) Query 56 SGKQRVPLTALSELTLLXLHEGHCLRDQTLDAAQHPGGVAG-HRRA-----VRDRRAGGD 109 + + RVP+ L+ LL L +GHCLRDQ + G H RA +R+ A G Sbjct 176 ANRDRVPMADLAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTHFRATSLETLRNMVAAGS 235 Query 110 ------TDSADRGRRRDHAKPAGTRPIRRPCPARRIGLVFSSFGGREKSYQRLAGII 160 + R R+RD P +P P R IGLV+ Y++LA I Sbjct 236 GITLLPALAVPRERKRDGVV---YLPCIKPEPRRTIGLVYRPGSPLRSRYEQLAEAI 289 >gi|156935911|ref|YP_001439827.1| DNA-binding transcriptional regulator OxyR [Cronobacter sakazakii ATCC BAA-894] gi|156534165|gb|ABU78991.1| hypothetical protein ESA_03805 [Cronobacter sakazakii ATCC BAA-894] gi|333954733|gb|EGL72554.1| DNA-binding transcriptional regulator OxyR [Cronobacter sakazakii E899] Length=305 Score = 37.4 bits (85), Expect = 0.77, Method: Compositional matrix adjust. Identities = 39/123 (32%), Positives = 53/123 (44%), Gaps = 15/123 (12%) Query 56 SGKQRVPLTALSELTLLXLHEGHCLRDQTLDAAQHPGGVAG-HRRA-----VRDRRAGGD 109 +G+ RVP+ L+ LL L +GHCLRDQ + G H RA +R+ A G Sbjct 176 AGRDRVPMGELAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTHFRATSLETLRNMVAAGS 235 Query 110 ------TDSADRGRRRDHAKPAGTRPIRRPCPARRIGLVFSSFGGREKSYQRLAGIIGKL 163 + R RD P +P P R IGLV+ Y++LA I K Sbjct 236 GITLLPALAVPPERHRDGVV---YLPCVKPEPRRTIGLVYRPGSPLRSRYEQLAEAIRKQ 292 Query 164 IRG 166 + G Sbjct 293 MDG 295 >gi|261819549|ref|YP_003257655.1| OxyR family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261603562|gb|ACX86048.1| transcriptional regulator, LysR family [Pectobacterium wasabiae WPP163] Length=302 Score = 37.4 bits (85), Expect = 0.81, Method: Compositional matrix adjust. Identities = 40/126 (32%), Positives = 58/126 (47%), Gaps = 21/126 (16%) Query 56 SGKQRVPLTALSELTLLXLHEGHCLRDQTLDAAQHPGGVAG-HRRA-----VRDRRAGGD 109 + ++RV ++ L+ LL L +GHCLRDQ + G H RA +R+ A G Sbjct 176 ANRERVAMSDLAGEKLLMLEDGHCLRDQAMGFCFQAGADEDTHFRATSLETLRNMVAAGS 235 Query 110 ------TDSADRGRRRDHAKPAGTRPIRRPCPARRIGLVF---SSFGGREKSYQRLAGII 160 + S R R RD P +P P R I LV+ S GR Y++LA I Sbjct 236 GITLLPSLSVPRERERDG---VCYLPCYKPEPKRTIALVYRPGSPLRGR---YEQLADTI 289 Query 161 GKLIRG 166 + ++G Sbjct 290 REHMQG 295 Lambda K H 0.327 0.138 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 136720389372 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40