BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2432c
Length=136
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609569|ref|NP_216948.1| hypothetical protein Rv2432c [Mycob... 272 1e-71
gi|340627445|ref|YP_004745897.1| hypothetical protein MCAN_24701... 269 1e-70
gi|328858467|gb|EGG07579.1| hypothetical protein MELLADRAFT_6232... 38.1 0.46
>gi|15609569|ref|NP_216948.1| hypothetical protein Rv2432c [Mycobacterium tuberculosis H37Rv]
gi|31793612|ref|NP_856105.1| hypothetical protein Mb2458c [Mycobacterium bovis AF2122/97]
gi|121638314|ref|YP_978538.1| hypothetical protein BCG_2451c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
52 more sequence titles
Length=136
Score = 272 bits (696), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 136/136 (100%), Positives = 136/136 (100%), Gaps = 0/136 (0%)
Query 1 MTVRAEHCRGAGGCDECPSVMPEHPTALFHDVAAIALAQPGAEPGAMMGFPCRPALLPHL 60
MTVRAEHCRGAGGCDECPSVMPEHPTALFHDVAAIALAQPGAEPGAMMGFPCRPALLPHL
Sbjct 1 MTVRAEHCRGAGGCDECPSVMPEHPTALFHDVAAIALAQPGAEPGAMMGFPCRPALLPHL 60
Query 61 SRAVMRCVRTRSASTSLGVSVIAGQLPAAGSRHRLGAPCRHVRWWLASDGHWGMVSYIPT 120
SRAVMRCVRTRSASTSLGVSVIAGQLPAAGSRHRLGAPCRHVRWWLASDGHWGMVSYIPT
Sbjct 61 SRAVMRCVRTRSASTSLGVSVIAGQLPAAGSRHRLGAPCRHVRWWLASDGHWGMVSYIPT 120
Query 121 ALNVSMGGIVGWRCVP 136
ALNVSMGGIVGWRCVP
Sbjct 121 ALNVSMGGIVGWRCVP 136
>gi|340627445|ref|YP_004745897.1| hypothetical protein MCAN_24701 [Mycobacterium canettii CIPT
140010059]
gi|340005635|emb|CCC44801.1| hypothetical protein MCAN_24701 [Mycobacterium canettii CIPT
140010059]
Length=136
Score = 269 bits (687), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 135/136 (99%), Positives = 135/136 (99%), Gaps = 0/136 (0%)
Query 1 MTVRAEHCRGAGGCDECPSVMPEHPTALFHDVAAIALAQPGAEPGAMMGFPCRPALLPHL 60
MTVRAEHCRGAGGCDECPSVMPEHPTALFHDVAAIALAQPGAEPGAMMGFPCRPALLPHL
Sbjct 1 MTVRAEHCRGAGGCDECPSVMPEHPTALFHDVAAIALAQPGAEPGAMMGFPCRPALLPHL 60
Query 61 SRAVMRCVRTRSASTSLGVSVIAGQLPAAGSRHRLGAPCRHVRWWLASDGHWGMVSYIPT 120
SRAVMRCVRTRSASTSLGVSVIAGQLPAAGSRHRLGAPCRHVRWW ASDGHWGMVSYIPT
Sbjct 61 SRAVMRCVRTRSASTSLGVSVIAGQLPAAGSRHRLGAPCRHVRWWPASDGHWGMVSYIPT 120
Query 121 ALNVSMGGIVGWRCVP 136
ALNVSMGGIVGWRCVP
Sbjct 121 ALNVSMGGIVGWRCVP 136
>gi|328858467|gb|EGG07579.1| hypothetical protein MELLADRAFT_62323 [Melampsora larici-populina
98AG31]
Length=309
Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/103 (30%), Positives = 41/103 (40%), Gaps = 6/103 (5%)
Query 10 GAGGCDECPSVMPEHPTALFHDVAAIALAQPGAEPGAMMGFPCRPALLPHLSRAVMRCVR 69
G G + P+V P + T + AA Q P A+ RPA+ S V RCVR
Sbjct 57 GQGSVE--PAVKPSNET----ERAATKAGQSNQNPRAIYKLRARPAVRHAPSEDVYRCVR 110
Query 70 TRSASTSLGVSVIAGQLPAAGSRHRLGAPCRHVRWWLASDGHW 112
T SVI +P S R+ P + + DG +
Sbjct 111 TFEVENGDAGSVICVTIPNRVSSLRIDLPSKRAAFLYRLDGFY 153
Lambda K H
0.325 0.136 0.470
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128858389450
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40