BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2438A

Length=92
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|31793619|ref|NP_856112.1|  hypothetical protein Mb2465 [Mycoba...   179    2e-43
gi|340627452|ref|YP_004745904.1|  hypothetical protein MCAN_24771...   176    9e-43


>gi|31793619|ref|NP_856112.1| hypothetical protein Mb2465 [Mycobacterium bovis AF2122/97]
 gi|57116991|ref|YP_177671.1| hypothetical protein Rv2438A [Mycobacterium tuberculosis H37Rv]
 gi|121638321|ref|YP_978545.1| hypothetical protein BCG_2458 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 9 more sequence titles
 Length=92

 Score =  179 bits (453),  Expect = 2e-43, Method: Compositional matrix adjust.
 Identities = 91/92 (99%), Positives = 92/92 (100%), Gaps = 0/92 (0%)

Query  1   VARTGHVQYRRGVGRRVTDGGVVSAGGNAHEPVLVGGVKVHRPFIVAQRRQNARITRRVS  60
           +ARTGHVQYRRGVGRRVTDGGVVSAGGNAHEPVLVGGVKVHRPFIVAQRRQNARITRRVS
Sbjct  1   MARTGHVQYRRGVGRRVTDGGVVSAGGNAHEPVLVGGVKVHRPFIVAQRRQNARITRRVS  60

Query  61  TLDTVESPALLADGGIDRRGDATDWAAADPGP  92
           TLDTVESPALLADGGIDRRGDATDWAAADPGP
Sbjct  61  TLDTVESPALLADGGIDRRGDATDWAAADPGP  92


>gi|340627452|ref|YP_004745904.1| hypothetical protein MCAN_24771 [Mycobacterium canettii CIPT 
140010059]
 gi|340005642|emb|CCC44808.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=92

 Score =  176 bits (447),  Expect = 9e-43, Method: Compositional matrix adjust.
 Identities = 90/92 (98%), Positives = 91/92 (99%), Gaps = 0/92 (0%)

Query  1   VARTGHVQYRRGVGRRVTDGGVVSAGGNAHEPVLVGGVKVHRPFIVAQRRQNARITRRVS  60
           +ARTGHVQYRRGVGRRVTDGGVV AGGNAHEPVLVGGVKVHRPFIVAQRRQNARITRRVS
Sbjct  1   MARTGHVQYRRGVGRRVTDGGVVRAGGNAHEPVLVGGVKVHRPFIVAQRRQNARITRRVS  60

Query  61  TLDTVESPALLADGGIDRRGDATDWAAADPGP  92
           TLDTVESPALLADGGIDRRGDATDWAAADPGP
Sbjct  61  TLDTVESPALLADGGIDRRGDATDWAAADPGP  92



Lambda     K      H
   0.319    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128268350160


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40