BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2444c Length=953 Score E Sequences producing significant alignments: (Bits) Value gi|15609581|ref|NP_216960.1| ribonuclease E [Mycobacterium tuber... 1877 0.0 gi|254365221|ref|ZP_04981267.1| ribonuclease E rne [Mycobacteriu... 1875 0.0 gi|341602365|emb|CCC65041.1| possible ribonuclease E rne [Mycoba... 1873 0.0 gi|298525924|ref|ZP_07013333.1| conserved hypothetical protein [... 1873 0.0 gi|167969768|ref|ZP_02552045.1| ribonuclease E rne [Mycobacteriu... 1800 0.0 gi|306780489|ref|ZP_07418826.1| ribonuclease E rne [Mycobacteriu... 1796 0.0 gi|15841967|ref|NP_337004.1| cytoplasmic axial filament protein,... 1231 0.0 gi|15827770|ref|NP_302033.1| ribonuclease [Mycobacterium leprae ... 1166 0.0 gi|183983748|ref|YP_001852039.1| ribonuclease E Rne [Mycobacteri... 1154 0.0 gi|118618976|ref|YP_907308.1| ribonuclease E Rne [Mycobacterium ... 1145 0.0 gi|118465085|ref|YP_880955.1| Rne protein [Mycobacterium avium 1... 1123 0.0 gi|336458197|gb|EGO37178.1| ribonuclease, Rne/Rng family [Mycoba... 1119 0.0 gi|41408365|ref|NP_961201.1| Rne [Mycobacterium avium subsp. par... 1119 0.0 gi|296170489|ref|ZP_06852076.1| ribonuclease E [Mycobacterium pa... 1082 0.0 gi|342857842|ref|ZP_08714498.1| ribonuclease [Mycobacterium colo... 1064 0.0 gi|240170915|ref|ZP_04749574.1| ribonuclease E Rne [Mycobacteriu... 1058 0.0 gi|254774544|ref|ZP_05216060.1| Rne protein [Mycobacterium avium... 997 0.0 gi|254819897|ref|ZP_05224898.1| Rne [Mycobacterium intracellular... 986 0.0 gi|145223221|ref|YP_001133899.1| ribonuclease [Mycobacterium gil... 946 0.0 gi|108800517|ref|YP_640714.1| ribonuclease [Mycobacterium sp. MC... 930 0.0 gi|126436133|ref|YP_001071824.1| ribonuclease [Mycobacterium sp.... 930 0.0 gi|120404901|ref|YP_954730.1| ribonuclease [Mycobacterium vanbaa... 920 0.0 gi|289762614|ref|ZP_06521992.1| ribonuclease E rne [Mycobacteriu... 912 0.0 gi|333990103|ref|YP_004522717.1| ribonuclease E Rne [Mycobacteri... 892 0.0 gi|169628697|ref|YP_001702346.1| ribonuclease E [Mycobacterium a... 852 0.0 gi|296139195|ref|YP_003646438.1| Rne/Rng family ribonuclease [Ts... 775 0.0 gi|262201995|ref|YP_003273203.1| ribonuclease, Rne/Rng family [G... 764 0.0 gi|333918793|ref|YP_004492374.1| putative ribonuclease E/ G [Amy... 763 0.0 gi|325677079|ref|ZP_08156748.1| rne/Rng family ribonuclease [Rho... 760 0.0 gi|312140345|ref|YP_004007681.1| ribonuclease e and g [Rhodococc... 758 0.0 gi|111018324|ref|YP_701296.1| ribonuclease E/ G [Rhodococcus jos... 757 0.0 gi|229493246|ref|ZP_04387038.1| possible ribonuclease E Rne [Rho... 754 0.0 gi|54023319|ref|YP_117561.1| hypothetical protein nfa13520 [Noca... 751 0.0 gi|319949123|ref|ZP_08023215.1| ribonuclease, Rne/Rng family [Di... 739 0.0 gi|343925344|ref|ZP_08764869.1| putative ribonuclease [Gordonia ... 737 0.0 gi|296394163|ref|YP_003659047.1| ribonuclease, Rne/Rng family [S... 735 0.0 gi|226360450|ref|YP_002778228.1| ribonuclease [Rhodococcus opacu... 733 0.0 gi|326382839|ref|ZP_08204529.1| ribonuclease, Rne/Rng family [Go... 730 0.0 gi|257055293|ref|YP_003133125.1| ribonuclease, Rne/Rng family [S... 713 0.0 gi|317507074|ref|ZP_07964836.1| rne/Rng family ribonuclease [Seg... 707 0.0 gi|256375324|ref|YP_003098984.1| ribonuclease, Rne/Rng family [A... 706 0.0 gi|302528915|ref|ZP_07281257.1| predicted protein [Streptomyces ... 700 0.0 gi|134097992|ref|YP_001103653.1| ribonuclease [Saccharopolyspora... 700 0.0 gi|226307282|ref|YP_002767242.1| ribonuclease [Rhodococcus eryth... 699 0.0 gi|332670933|ref|YP_004453941.1| ribonuclease, Rne/Rng family [C... 692 0.0 gi|300788544|ref|YP_003768835.1| ribonuclease [Amycolatopsis med... 689 0.0 gi|340530149|gb|AEK45354.1| ribonuclease [Amycolatopsis mediterr... 689 0.0 gi|256396379|ref|YP_003117943.1| ribonuclease, Rne/Rng family [C... 687 0.0 gi|296130124|ref|YP_003637374.1| ribonuclease, Rne/Rng family [C... 684 0.0 gi|291008538|ref|ZP_06566511.1| ribonuclease [Saccharopolyspora ... 682 0.0 >gi|15609581|ref|NP_216960.1| ribonuclease E [Mycobacterium tuberculosis H37Rv] gi|31793625|ref|NP_856118.1| ribonuclease E [Mycobacterium bovis AF2122/97] gi|121638327|ref|YP_978551.1| putative ribonuclease E rne [Mycobacterium bovis BCG str. Pasteur 1173P2] 48 more sequence titles Length=953 Score = 1877 bits (4863), Expect = 0.0, Method: Compositional matrix adjust. Identities = 952/953 (99%), Positives = 953/953 (100%), Gaps = 0/953 (0%) Query 1 VIDGAPPSDPPEPSQHEELPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDRV 60 +IDGAPPSDPPEPSQHEELPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDRV Sbjct 1 MIDGAPPSDPPEPSQHEELPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDRV 60 Query 61 DAVRVRDLLATHLETAGVLAASVHAPEASEEPESRLMLETQETRNADVERPHYMPLFVAP 120 DAVRVRDLLATHLETAGVLAASVHAPEASEEPESRLMLETQETRNADVERPHYMPLFVAP Sbjct 61 DAVRVRDLLATHLETAGVLAASVHAPEASEEPESRLMLETQETRNADVERPHYMPLFVAP 120 Query 121 QPIPEPLADDEDVDDGPDYVADDSDADDEGQLDRPANRRRRRGRRGRGRGRGEQGGSDGD 180 QPIPEPLADDEDVDDGPDYVADDSDADDEGQLDRPANRRRRRGRRGRGRGRGEQGGSDGD Sbjct 121 QPIPEPLADDEDVDDGPDYVADDSDADDEGQLDRPANRRRRRGRRGRGRGRGEQGGSDGD 180 Query 181 PVDQQSEPRAQQFTSADAAETDDGDDRDSEDTEAGDNGEDENGSLEAGNRRRRRRRRRKS 240 PVDQQSEPRAQQFTSADAAETDDGDDRDSEDTEAGDNGEDENGSLEAGNRRRRRRRRRKS Sbjct 181 PVDQQSEPRAQQFTSADAAETDDGDDRDSEDTEAGDNGEDENGSLEAGNRRRRRRRRRKS 240 Query 241 ASGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKR 300 ASGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKR Sbjct 241 ASGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKR 300 Query 301 QRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGI 360 QRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGI Sbjct 301 QRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGI 360 Query 361 VVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGA 420 VVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGA Sbjct 361 VVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGA 420 Query 421 DRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTE 480 DRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTE Sbjct 421 DRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTE 480 Query 481 RQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGA 540 RQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGA Sbjct 481 RQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGA 540 Query 541 AVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADG 600 AVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADG Sbjct 541 AVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADG 600 Query 601 PDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNL 660 PDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNL Sbjct 601 PDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNL 660 Query 661 EQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQ 720 EQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQ Sbjct 661 EQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQ 720 Query 721 VSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRKSEPGARR 780 VSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRKSEPGARR Sbjct 721 VSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRKSEPGARR 780 Query 781 GKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAAGLSSLAGRGDEESGEPAAELAEQ 840 GKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAAGLSSLAGRGDEESGEPAAELAEQ Sbjct 781 GKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAAGLSSLAGRGDEESGEPAAELAEQ 840 Query 841 AGDQPPTDLDDTAQADFEDTEDTDEDEDELDADEDLEDLDDEDLDEDLDVEDSDSDDEDS 900 AGDQPPTDLDDTAQADFEDTEDTDEDEDELDADEDLEDLDDEDLDEDLDVEDSDSDDEDS Sbjct 841 AGDQPPTDLDDTAQADFEDTEDTDEDEDELDADEDLEDLDDEDLDEDLDVEDSDSDDEDS 900 Query 901 DEDAADADVDEEDAAGLDGSPGEVDVPGVTELAPTRPRRRVAGRPAGPPIRLD 953 DEDAADADVDEEDAAGLDGSPGEVDVPGVTELAPTRPRRRVAGRPAGPPIRLD Sbjct 901 DEDAADADVDEEDAAGLDGSPGEVDVPGVTELAPTRPRRRVAGRPAGPPIRLD 953 >gi|254365221|ref|ZP_04981267.1| ribonuclease E rne [Mycobacterium tuberculosis str. Haarlem] gi|134150735|gb|EBA42780.1| ribonuclease E rne [Mycobacterium tuberculosis str. Haarlem] Length=953 Score = 1875 bits (4857), Expect = 0.0, Method: Compositional matrix adjust. Identities = 951/953 (99%), Positives = 952/953 (99%), Gaps = 0/953 (0%) Query 1 VIDGAPPSDPPEPSQHEELPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDRV 60 +IDGAPPSDPPEPSQHEELPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDRV Sbjct 1 MIDGAPPSDPPEPSQHEELPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDRV 60 Query 61 DAVRVRDLLATHLETAGVLAASVHAPEASEEPESRLMLETQETRNADVERPHYMPLFVAP 120 DAVRVRDLLATHLETAGVLAASVHAPEASEEPESRLMLETQETRNADVERPHYMPLFVAP Sbjct 61 DAVRVRDLLATHLETAGVLAASVHAPEASEEPESRLMLETQETRNADVERPHYMPLFVAP 120 Query 121 QPIPEPLADDEDVDDGPDYVADDSDADDEGQLDRPANRRRRRGRRGRGRGRGEQGGSDGD 180 QPIPEPLADDEDVDDGPDYVADDSDADDEGQLDRPANRRRRRGRRGRGRGRGEQGGSDGD Sbjct 121 QPIPEPLADDEDVDDGPDYVADDSDADDEGQLDRPANRRRRRGRRGRGRGRGEQGGSDGD 180 Query 181 PVDQQSEPRAQQFTSADAAETDDGDDRDSEDTEAGDNGEDENGSLEAGNRRRRRRRRRKS 240 PVDQQSEPRAQQFTSADAAETDDGDDRDSEDTEAGDNGEDENGSLEAGNRRRRRRRRRKS Sbjct 181 PVDQQSEPRAQQFTSADAAETDDGDDRDSEDTEAGDNGEDENGSLEAGNRRRRRRRRRKS 240 Query 241 ASGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKR 300 ASGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKR Sbjct 241 ASGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKR 300 Query 301 QRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGI 360 QRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGI Sbjct 301 QRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGI 360 Query 361 VVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGA 420 VVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGA Sbjct 361 VVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGA 420 Query 421 DRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTE 480 DRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTE Sbjct 421 DRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTE 480 Query 481 RQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGA 540 RQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGA Sbjct 481 RQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGA 540 Query 541 AVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADG 600 AVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADG Sbjct 541 AVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADG 600 Query 601 PDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNL 660 PDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNL Sbjct 601 PDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNL 660 Query 661 EQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQ 720 EQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQ Sbjct 661 EQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQ 720 Query 721 VSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRKSEPGARR 780 VSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRKSEPGARR Sbjct 721 VSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRKSEPGARR 780 Query 781 GKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAAGLSSLAGRGDEESGEPAAELAEQ 840 GKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAAGLSSLAGRGDEESGEPAAELAEQ Sbjct 781 GKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAAGLSSLAGRGDEESGEPAAELAEQ 840 Query 841 AGDQPPTDLDDTAQADFEDTEDTDEDEDELDADEDLEDLDDEDLDEDLDVEDSDSDDEDS 900 AGDQPPTDLDDTAQADFEDTEDTDEDEDELDADEDLEDLDDEDLDEDLDVEDSDSDDEDS Sbjct 841 AGDQPPTDLDDTAQADFEDTEDTDEDEDELDADEDLEDLDDEDLDEDLDVEDSDSDDEDS 900 Query 901 DEDAADADVDEEDAAGLDGSPGEVDVPGVTELAPTRPRRRVAGRPAGPPIRLD 953 DEDAADADVDEEDAAGLDGSP EVDVPGVTELAPTRPRRRVAGRPAGPPIRLD Sbjct 901 DEDAADADVDEEDAAGLDGSPAEVDVPGVTELAPTRPRRRVAGRPAGPPIRLD 953 >gi|341602365|emb|CCC65041.1| possible ribonuclease E rne [Mycobacterium bovis BCG str. Moreau RDJ] Length=953 Score = 1873 bits (4853), Expect = 0.0, Method: Compositional matrix adjust. Identities = 951/953 (99%), Positives = 952/953 (99%), Gaps = 0/953 (0%) Query 1 VIDGAPPSDPPEPSQHEELPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDRV 60 +IDGAPPSDPPEPSQHEELPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDRV Sbjct 1 MIDGAPPSDPPEPSQHEELPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDRV 60 Query 61 DAVRVRDLLATHLETAGVLAASVHAPEASEEPESRLMLETQETRNADVERPHYMPLFVAP 120 DAVRVRDLLATHLETAGVLAASVHAPEASEEPESRLMLETQETRNADVERPHYMPLFVAP Sbjct 61 DAVRVRDLLATHLETAGVLAASVHAPEASEEPESRLMLETQETRNADVERPHYMPLFVAP 120 Query 121 QPIPEPLADDEDVDDGPDYVADDSDADDEGQLDRPANRRRRRGRRGRGRGRGEQGGSDGD 180 QPIPEPLADDEDVDDGPDYVADDSDADDEGQLDRPANRRRRRGRRGRGRGRGEQGGSDGD Sbjct 121 QPIPEPLADDEDVDDGPDYVADDSDADDEGQLDRPANRRRRRGRRGRGRGRGEQGGSDGD 180 Query 181 PVDQQSEPRAQQFTSADAAETDDGDDRDSEDTEAGDNGEDENGSLEAGNRRRRRRRRRKS 240 PVDQQSEPRAQQFTSADAAETDDGDDRDSEDTEAGDNGEDENGSLEAGNRRRRRRRRRKS Sbjct 181 PVDQQSEPRAQQFTSADAAETDDGDDRDSEDTEAGDNGEDENGSLEAGNRRRRRRRRRKS 240 Query 241 ASGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKR 300 ASGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKR Sbjct 241 ASGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKR 300 Query 301 QRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGI 360 QRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGI Sbjct 301 QRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGI 360 Query 361 VVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGA 420 VVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGA Sbjct 361 VVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGA 420 Query 421 DRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTE 480 DRKIEQALKPGDYVVVQVSKDPVGHKGARL TQVSLAGRFLVYVPGASSTGISRKLPDTE Sbjct 421 DRKIEQALKPGDYVVVQVSKDPVGHKGARLPTQVSLAGRFLVYVPGASSTGISRKLPDTE 480 Query 481 RQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGA 540 RQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGA Sbjct 481 RQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGA 540 Query 541 AVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADG 600 AVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADG Sbjct 541 AVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADG 600 Query 601 PDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNL 660 PDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNL Sbjct 601 PDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNL 660 Query 661 EQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQ 720 EQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQ Sbjct 661 EQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQ 720 Query 721 VSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRKSEPGARR 780 VSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRKSEPGARR Sbjct 721 VSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRKSEPGARR 780 Query 781 GKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAAGLSSLAGRGDEESGEPAAELAEQ 840 GKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAAGLSSLAGRGDEESGEPAAELAEQ Sbjct 781 GKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAAGLSSLAGRGDEESGEPAAELAEQ 840 Query 841 AGDQPPTDLDDTAQADFEDTEDTDEDEDELDADEDLEDLDDEDLDEDLDVEDSDSDDEDS 900 AGDQPPTDLDDTAQADFEDTEDTDEDEDELDADEDLEDLDDEDLDEDLDVEDSDSDDEDS Sbjct 841 AGDQPPTDLDDTAQADFEDTEDTDEDEDELDADEDLEDLDDEDLDEDLDVEDSDSDDEDS 900 Query 901 DEDAADADVDEEDAAGLDGSPGEVDVPGVTELAPTRPRRRVAGRPAGPPIRLD 953 DEDAADADVDEEDAAGLDGSPGEVDVPGVTELAPTRPRRRVAGRPAGPPIRLD Sbjct 901 DEDAADADVDEEDAAGLDGSPGEVDVPGVTELAPTRPRRRVAGRPAGPPIRLD 953 >gi|298525924|ref|ZP_07013333.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|298495718|gb|EFI31012.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] Length=953 Score = 1873 bits (4851), Expect = 0.0, Method: Compositional matrix adjust. Identities = 951/953 (99%), Positives = 952/953 (99%), Gaps = 0/953 (0%) Query 1 VIDGAPPSDPPEPSQHEELPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDRV 60 +IDGAPPSDPPEPSQHEELPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDRV Sbjct 1 MIDGAPPSDPPEPSQHEELPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDRV 60 Query 61 DAVRVRDLLATHLETAGVLAASVHAPEASEEPESRLMLETQETRNADVERPHYMPLFVAP 120 DAVRVRDLLATHLETAGVLAASVHAPEASEEPESRLMLETQETRNADVERPHYMPLFVAP Sbjct 61 DAVRVRDLLATHLETAGVLAASVHAPEASEEPESRLMLETQETRNADVERPHYMPLFVAP 120 Query 121 QPIPEPLADDEDVDDGPDYVADDSDADDEGQLDRPANRRRRRGRRGRGRGRGEQGGSDGD 180 QPIPEPLADDEDVDDGPDYVADDSDADDEGQLDRPANRRRRRGRRGRGRGRGEQGGSDGD Sbjct 121 QPIPEPLADDEDVDDGPDYVADDSDADDEGQLDRPANRRRRRGRRGRGRGRGEQGGSDGD 180 Query 181 PVDQQSEPRAQQFTSADAAETDDGDDRDSEDTEAGDNGEDENGSLEAGNRRRRRRRRRKS 240 PVDQQSEPRAQQFTSADAAETDDGDDRDSEDTEAGDNGEDENGSLEAGNRRRRRRRRRKS Sbjct 181 PVDQQSEPRAQQFTSADAAETDDGDDRDSEDTEAGDNGEDENGSLEAGNRRRRRRRRRKS 240 Query 241 ASGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKR 300 ASGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKR Sbjct 241 ASGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKR 300 Query 301 QRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGI 360 QRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGI Sbjct 301 QRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGI 360 Query 361 VVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGA 420 VVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGA Sbjct 361 VVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGA 420 Query 421 DRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTE 480 DRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTE Sbjct 421 DRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTE 480 Query 481 RQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGA 540 RQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGA Sbjct 481 RQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGA 540 Query 541 AVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADG 600 AVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADG Sbjct 541 AVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADG 600 Query 601 PDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNL 660 PDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNL Sbjct 601 PDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNL 660 Query 661 EQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQ 720 EQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQ Sbjct 661 EQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQ 720 Query 721 VSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRKSEPGARR 780 VSEVTSLGLVQLTRKRL TGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRKSEPGARR Sbjct 721 VSEVTSLGLVQLTRKRLRTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRKSEPGARR 780 Query 781 GKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAAGLSSLAGRGDEESGEPAAELAEQ 840 GKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAAGLSSLAGRGDEESGEPAAELAEQ Sbjct 781 GKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAAGLSSLAGRGDEESGEPAAELAEQ 840 Query 841 AGDQPPTDLDDTAQADFEDTEDTDEDEDELDADEDLEDLDDEDLDEDLDVEDSDSDDEDS 900 AGDQPPTDLDDTAQADFEDTEDTDEDEDELDADEDLEDLDDEDLDEDLDVEDSDSDDEDS Sbjct 841 AGDQPPTDLDDTAQADFEDTEDTDEDEDELDADEDLEDLDDEDLDEDLDVEDSDSDDEDS 900 Query 901 DEDAADADVDEEDAAGLDGSPGEVDVPGVTELAPTRPRRRVAGRPAGPPIRLD 953 DEDAADADVDEEDAAGLDGSPGEVDVPGVTELAPTRPRRRVAGRPAGPPIRLD Sbjct 901 DEDAADADVDEEDAAGLDGSPGEVDVPGVTELAPTRPRRRVAGRPAGPPIRLD 953 >gi|167969768|ref|ZP_02552045.1| ribonuclease E rne [Mycobacterium tuberculosis H37Ra] gi|254551494|ref|ZP_05141941.1| ribonuclease E rne [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|294994446|ref|ZP_06800137.1| ribonuclease E rne [Mycobacterium tuberculosis 210] 14 more sequence titles Length=915 Score = 1800 bits (4662), Expect = 0.0, Method: Compositional matrix adjust. Identities = 914/915 (99%), Positives = 915/915 (100%), Gaps = 0/915 (0%) Query 39 VLDALTALDGRVRSAHSTVDRVDAVRVRDLLATHLETAGVLAASVHAPEASEEPESRLML 98 +LDALTALDGRVRSAHSTVDRVDAVRVRDLLATHLETAGVLAASVHAPEASEEPESRLML Sbjct 1 MLDALTALDGRVRSAHSTVDRVDAVRVRDLLATHLETAGVLAASVHAPEASEEPESRLML 60 Query 99 ETQETRNADVERPHYMPLFVAPQPIPEPLADDEDVDDGPDYVADDSDADDEGQLDRPANR 158 ETQETRNADVERPHYMPLFVAPQPIPEPLADDEDVDDGPDYVADDSDADDEGQLDRPANR Sbjct 61 ETQETRNADVERPHYMPLFVAPQPIPEPLADDEDVDDGPDYVADDSDADDEGQLDRPANR 120 Query 159 RRRRGRRGRGRGRGEQGGSDGDPVDQQSEPRAQQFTSADAAETDDGDDRDSEDTEAGDNG 218 RRRRGRRGRGRGRGEQGGSDGDPVDQQSEPRAQQFTSADAAETDDGDDRDSEDTEAGDNG Sbjct 121 RRRRGRRGRGRGRGEQGGSDGDPVDQQSEPRAQQFTSADAAETDDGDDRDSEDTEAGDNG 180 Query 219 EDENGSLEAGNRRRRRRRRRKSASGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQ 278 EDENGSLEAGNRRRRRRRRRKSASGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQ Sbjct 181 EDENGSLEAGNRRRRRRRRRKSASGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQ 240 Query 279 DGGSGSTEIKGIDGSTRLEAKRQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDR 338 DGGSGSTEIKGIDGSTRLEAKRQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDR Sbjct 241 DGGSGSTEIKGIDGSTRLEAKRQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDR 300 Query 339 VRTEPPLPGTRYTQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIG 398 VRTEPPLPGTRYTQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIG Sbjct 301 VRTEPPLPGTRYTQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIG 360 Query 399 RGRNGVLYAGEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAG 458 RGRNGVLYAGEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAG Sbjct 361 RGRNGVLYAGEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAG 420 Query 459 RFLVYVPGASSTGISRKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVAR 518 RFLVYVPGASSTGISRKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVAR Sbjct 421 RFLVYVPGASSTGISRKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVAR 480 Query 519 LRERWEQIEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTIN 578 LRERWEQIEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTIN Sbjct 481 LRERWEQIEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTIN 540 Query 579 EYVNSVAPELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVID 638 EYVNSVAPELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVID Sbjct 541 EYVNSVAPELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVID 600 Query 639 RTEAMTVIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLE 698 RTEAMTVIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLE Sbjct 601 RTEAMTVIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLE 660 Query 699 SNRDLVLRRLTESLARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGIL 758 SNRDLVLRRLTESLARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGIL Sbjct 661 SNRDLVLRRLTESLARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGIL 720 Query 759 LHADPVDSAAATGRKSEPGARRGKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAAG 818 LHADPVDSAAATGRKSEPGARRGKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAAG Sbjct 721 LHADPVDSAAATGRKSEPGARRGKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAAG 780 Query 819 LSSLAGRGDEESGEPAAELAEQAGDQPPTDLDDTAQADFEDTEDTDEDEDELDADEDLED 878 LSSLAGRGDEESGEPAAELAEQAGDQPPTDLDDTAQADFEDTEDTDEDEDELDADEDLED Sbjct 781 LSSLAGRGDEESGEPAAELAEQAGDQPPTDLDDTAQADFEDTEDTDEDEDELDADEDLED 840 Query 879 LDDEDLDEDLDVEDSDSDDEDSDEDAADADVDEEDAAGLDGSPGEVDVPGVTELAPTRPR 938 LDDEDLDEDLDVEDSDSDDEDSDEDAADADVDEEDAAGLDGSPGEVDVPGVTELAPTRPR Sbjct 841 LDDEDLDEDLDVEDSDSDDEDSDEDAADADVDEEDAAGLDGSPGEVDVPGVTELAPTRPR 900 Query 939 RRVAGRPAGPPIRLD 953 RRVAGRPAGPPIRLD Sbjct 901 RRVAGRPAGPPIRLD 915 >gi|306780489|ref|ZP_07418826.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu002] gi|306789600|ref|ZP_07427922.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu004] gi|306793927|ref|ZP_07432229.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu005] gi|308326638|gb|EFP15489.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu002] gi|308333903|gb|EFP22754.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu004] gi|308337706|gb|EFP26557.1| ribonuclease E rne [Mycobacterium tuberculosis SUMu005] Length=915 Score = 1796 bits (4653), Expect = 0.0, Method: Compositional matrix adjust. Identities = 913/915 (99%), Positives = 914/915 (99%), Gaps = 0/915 (0%) Query 39 VLDALTALDGRVRSAHSTVDRVDAVRVRDLLATHLETAGVLAASVHAPEASEEPESRLML 98 +LDALTALDGRVRSAHSTVDRVDAVRVRDLLATHLETAGVLAASVHAPEASEEPESRLML Sbjct 1 MLDALTALDGRVRSAHSTVDRVDAVRVRDLLATHLETAGVLAASVHAPEASEEPESRLML 60 Query 99 ETQETRNADVERPHYMPLFVAPQPIPEPLADDEDVDDGPDYVADDSDADDEGQLDRPANR 158 ETQETRNADVERPHYMPLFVAPQPIPEPLADDEDVDDGPDYVADDSDADDEGQLDRPANR Sbjct 61 ETQETRNADVERPHYMPLFVAPQPIPEPLADDEDVDDGPDYVADDSDADDEGQLDRPANR 120 Query 159 RRRRGRRGRGRGRGEQGGSDGDPVDQQSEPRAQQFTSADAAETDDGDDRDSEDTEAGDNG 218 RRRRGRRGRGRGRGEQGGSDGDPVDQQSEPRAQQFTSADAAETDDGDDRDSEDTEAGDNG Sbjct 121 RRRRGRRGRGRGRGEQGGSDGDPVDQQSEPRAQQFTSADAAETDDGDDRDSEDTEAGDNG 180 Query 219 EDENGSLEAGNRRRRRRRRRKSASGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQ 278 EDENGSLEAGNRRRRRRRRRKSASGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQ Sbjct 181 EDENGSLEAGNRRRRRRRRRKSASGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQ 240 Query 279 DGGSGSTEIKGIDGSTRLEAKRQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDR 338 DGGSGSTEIKGIDGSTRLEAKRQRRRDGRDAGRRRPPVLSEAEFLARREAVE VMVVRDR Sbjct 241 DGGSGSTEIKGIDGSTRLEAKRQRRRDGRDAGRRRPPVLSEAEFLARREAVEWVMVVRDR 300 Query 339 VRTEPPLPGTRYTQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIG 398 VRTEPPLPGTRYTQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIG Sbjct 301 VRTEPPLPGTRYTQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIG 360 Query 399 RGRNGVLYAGEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAG 458 RGRNGVLYAGEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAG Sbjct 361 RGRNGVLYAGEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAG 420 Query 459 RFLVYVPGASSTGISRKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVAR 518 RFLVYVPGASSTGISRKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVAR Sbjct 421 RFLVYVPGASSTGISRKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVAR 480 Query 519 LRERWEQIEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTIN 578 LRERWEQIEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTIN Sbjct 481 LRERWEQIEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTIN 540 Query 579 EYVNSVAPELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVID 638 EYVNSVAPELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVID Sbjct 541 EYVNSVAPELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVID 600 Query 639 RTEAMTVIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLE 698 RTEAMTVIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLE Sbjct 601 RTEAMTVIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLE 660 Query 699 SNRDLVLRRLTESLARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGIL 758 SNRDLVLRRLTESLARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGIL Sbjct 661 SNRDLVLRRLTESLARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGIL 720 Query 759 LHADPVDSAAATGRKSEPGARRGKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAAG 818 LHADPVDSAAATGRKSEPGARRGKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAAG Sbjct 721 LHADPVDSAAATGRKSEPGARRGKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAAG 780 Query 819 LSSLAGRGDEESGEPAAELAEQAGDQPPTDLDDTAQADFEDTEDTDEDEDELDADEDLED 878 LSSLAGRGDEESGEPAAELAEQAGDQPPTDLDDTAQADFEDTEDTDEDEDELDADEDLED Sbjct 781 LSSLAGRGDEESGEPAAELAEQAGDQPPTDLDDTAQADFEDTEDTDEDEDELDADEDLED 840 Query 879 LDDEDLDEDLDVEDSDSDDEDSDEDAADADVDEEDAAGLDGSPGEVDVPGVTELAPTRPR 938 LDDEDLDEDLDVEDSDSDDEDSDEDAADADVDEEDAAGLDGSPGEVDVPGVTELAPTRPR Sbjct 841 LDDEDLDEDLDVEDSDSDDEDSDEDAADADVDEEDAAGLDGSPGEVDVPGVTELAPTRPR 900 Query 939 RRVAGRPAGPPIRLD 953 RRVAGRPAGPPIRLD Sbjct 901 RRVAGRPAGPPIRLD 915 >gi|15841967|ref|NP_337004.1| cytoplasmic axial filament protein, putative [Mycobacterium tuberculosis CDC1551] gi|13882240|gb|AAK46818.1| cytoplasmic axial filament protein, putative [Mycobacterium tuberculosis CDC1551] Length=621 Score = 1231 bits (3186), Expect = 0.0, Method: Compositional matrix adjust. Identities = 621/621 (100%), Positives = 621/621 (100%), Gaps = 0/621 (0%) Query 333 MVVRDRVRTEPPLPGTRYTQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEA 392 MVVRDRVRTEPPLPGTRYTQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEA Sbjct 1 MVVRDRVRTEPPLPGTRYTQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEA 60 Query 393 AFVDIGRGRNGVLYAGEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTT 452 AFVDIGRGRNGVLYAGEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTT Sbjct 61 AFVDIGRGRNGVLYAGEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTT 120 Query 453 QVSLAGRFLVYVPGASSTGISRKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDI 512 QVSLAGRFLVYVPGASSTGISRKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDI Sbjct 121 QVSLAGRFLVYVPGASSTGISRKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDI 180 Query 513 RADVARLRERWEQIEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDE 572 RADVARLRERWEQIEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDE Sbjct 181 RADVARLRERWEQIEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDE 240 Query 573 AWNTINEYVNSVAPELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSG 632 AWNTINEYVNSVAPELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSG Sbjct 241 AWNTINEYVNSVAPELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSG 300 Query 633 GTLVIDRTEAMTVIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDF 692 GTLVIDRTEAMTVIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDF Sbjct 301 GTLVIDRTEAMTVIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDF 360 Query 693 IDMVLESNRDLVLRRLTESLARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNC 752 IDMVLESNRDLVLRRLTESLARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNC Sbjct 361 IDMVLESNRDLVLRRLTESLARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNC 420 Query 753 SGRGILLHADPVDSAAATGRKSEPGARRGKRSKKSRSEESSDRSMVAKVPVHAPGEHPMF 812 SGRGILLHADPVDSAAATGRKSEPGARRGKRSKKSRSEESSDRSMVAKVPVHAPGEHPMF Sbjct 421 SGRGILLHADPVDSAAATGRKSEPGARRGKRSKKSRSEESSDRSMVAKVPVHAPGEHPMF 480 Query 813 KAMAAGLSSLAGRGDEESGEPAAELAEQAGDQPPTDLDDTAQADFEDTEDTDEDEDELDA 872 KAMAAGLSSLAGRGDEESGEPAAELAEQAGDQPPTDLDDTAQADFEDTEDTDEDEDELDA Sbjct 481 KAMAAGLSSLAGRGDEESGEPAAELAEQAGDQPPTDLDDTAQADFEDTEDTDEDEDELDA 540 Query 873 DEDLEDLDDEDLDEDLDVEDSDSDDEDSDEDAADADVDEEDAAGLDGSPGEVDVPGVTEL 932 DEDLEDLDDEDLDEDLDVEDSDSDDEDSDEDAADADVDEEDAAGLDGSPGEVDVPGVTEL Sbjct 541 DEDLEDLDDEDLDEDLDVEDSDSDDEDSDEDAADADVDEEDAAGLDGSPGEVDVPGVTEL 600 Query 933 APTRPRRRVAGRPAGPPIRLD 953 APTRPRRRVAGRPAGPPIRLD Sbjct 601 APTRPRRRVAGRPAGPPIRLD 621 >gi|15827770|ref|NP_302033.1| ribonuclease [Mycobacterium leprae TN] gi|221230247|ref|YP_002503663.1| putative ribonuclease [Mycobacterium leprae Br4923] gi|13093322|emb|CAC30418.1| possible ribonuclease [Mycobacterium leprae] gi|219933354|emb|CAR71562.1| possible ribonuclease [Mycobacterium leprae Br4923] Length=924 Score = 1166 bits (3017), Expect = 0.0, Method: Compositional matrix adjust. Identities = 669/865 (78%), Positives = 726/865 (84%), Gaps = 36/865 (4%) Query 1 VIDGAPPSDPP-EPSQHEELPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDR 59 +IDGAPP +P EP+QH ELPDRLRVHSLARTLGTTSRRVLD L+ALDGR+RSAHS+VDR Sbjct 1 MIDGAPPLEPSKEPTQHMELPDRLRVHSLARTLGTTSRRVLDVLSALDGRIRSAHSSVDR 60 Query 60 VDAVRVRDLLATHLETAGVLAASVHAPEASEEPESRLMLETQETRNADVERPHYMPLFVA 119 VDAVRVRDLLA+ + L A P A EE +SRL+LET VERPHYMPLFVA Sbjct 61 VDAVRVRDLLASQPNSPHELTAVPDNPVALEERDSRLVLETT------VERPHYMPLFVA 114 Query 120 PQPIPEPLADDEDVDDGPDYVADDSDADDEGQLDRPANRRRRRGRRGRGRGRGEQGGSD- 178 PQPI + DD DD + D DDE Q DRPANRRRRRGRRGRGRGRGEQGGSD Sbjct 115 PQPIE--VDDDSCADDDVESGDDSDVGDDEEQPDRPANRRRRRGRRGRGRGRGEQGGSDV 172 Query 179 -GDPVDQQSEPRAQQFTSADAAETDDGDDRDSEDTEAGDNGEDENGSLEAGNRRRRRRRR 237 D VD + D+ E++D D +D +++E + G DE+GS EAGNRRRRRRRR Sbjct 173 QSDDVDG----------AVDSTESEDFDGQDFDESEDTEIGYDESGSSEAGNRRRRRRRR 222 Query 238 RKSASGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQDG--GSGSTEIKGIDGSTR 295 RKS G+D EG PDDPPNTVVHER PRA ++ + +G G+GS +IKGIDGSTR Sbjct 223 RKSGVGED-----EGCAPDDPPNTVVHERTPRAAGRSASFDNGVNGTGSADIKGIDGSTR 277 Query 296 LEAKRQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAV 355 LEAKRQRRRDGRDAGRRR VLSEAEFLARRE+VERVMVVRDR+RTEPP PG RYTQIAV Sbjct 278 LEAKRQRRRDGRDAGRRRSSVLSEAEFLARRESVERVMVVRDRIRTEPPHPGARYTQIAV 337 Query 356 LEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAA 415 LEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNW+AA Sbjct 338 LEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAA 397 Query 416 GLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRK 475 GLGGADRKIEQALKPGDY+VVQV+KDPVGHKGARLTTQVSLAGR+LVYVPGASSTGISRK Sbjct 398 GLGGADRKIEQALKPGDYIVVQVNKDPVGHKGARLTTQVSLAGRYLVYVPGASSTGISRK 457 Query 476 LPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKE 535 LPDTERQRLKEILREVVP DAGVIIRTASEGVKE+DIR DV RL+E WEQIEAK +TKE Sbjct 458 LPDTERQRLKEILREVVPPDAGVIIRTASEGVKEEDIRKDVTRLQEHWEQIEAKTIQTKE 517 Query 536 KAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKY 595 KAAGAAVALYEEPDVLVKVIRDLFN+DF GL+VSGDEAWNTINEYVNSVAPELVSKLTKY Sbjct 518 KAAGAAVALYEEPDVLVKVIRDLFNDDFSGLVVSGDEAWNTINEYVNSVAPELVSKLTKY 577 Query 596 ESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTG 655 + GPDGQ PDVF VHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTG Sbjct 578 DPPIGPDGQHGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTG 637 Query 656 AGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARD 715 +GGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTE LARD Sbjct 638 SGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTEVLARD 697 Query 716 RTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRKSE 775 RTRHQVSEVTSLGLVQLTRKRLGTGL+EAFSTSCPNC+GRGILLH DP +S GRKSE Sbjct 698 RTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTSCPNCTGRGILLHTDPANSTPMVGRKSE 757 Query 776 PGARRGKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAAGLSSLAGRGDEESGEPAA 835 G RR KRSKK+RS+E++ V KVPVHAPGEHPMFKAMAAG SS+ G++ES E Sbjct 758 SGGRRSKRSKKNRSDETA----VVKVPVHAPGEHPMFKAMAAGSSSVVVGGEDESNESGT 813 Query 836 ELAEQAGDQPPTDLDDTAQADFEDT 860 EL + D+P L++ A A +D Sbjct 814 ELTGKI-DEP---LEEQAVAGLDDV 834 >gi|183983748|ref|YP_001852039.1| ribonuclease E Rne [Mycobacterium marinum M] gi|183177074|gb|ACC42184.1| ribonuclease E Rne [Mycobacterium marinum M] Length=1017 Score = 1154 bits (2985), Expect = 0.0, Method: Compositional matrix adjust. Identities = 684/865 (80%), Positives = 734/865 (85%), Gaps = 31/865 (3%) Query 1 VIDGAPPSDPP-EPSQHEELPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDR 59 ++DGAP SDP EP+Q E+LPDRLRVHSLARTLGT+SRRVLDAL+ALDGR+RSAHS+VDR Sbjct 1 MVDGAPSSDPENEPTQREDLPDRLRVHSLARTLGTSSRRVLDALSALDGRIRSAHSSVDR 60 Query 60 VDAVRVRDLLATHLETAGVLAASVHAPEA--------------SEEPESRLMLETQETRN 105 VDAVRVRDLLA G AP+A +EPESRLMLETQET Sbjct 61 VDAVRVRDLLAEQPAEEGQAEEGQQAPDAVAAEVPDAPGEPAEPDEPESRLMLETQETVQ 120 Query 106 A---DVERPHYMPLFVAPQPIPEPLADDEDVDDGPDYVADDSDADDEGQLDRPANRRRRR 162 VERPHYMPLFVAPQPI EP+A D+ D + D DDE Q DRPANRRRRR Sbjct 121 VVETWVERPHYMPLFVAPQPISEPVAGDD-----ADDESGDEGDDDEEQADRPANRRRRR 175 Query 163 GRRGRGRGRGEQGGSDGD--PVDQQSEPRAQQFTSADAAETDDGDDRDSEDTEAGDNGED 220 GRRGRGRGRGEQG +DG P D E A Q T ++ +DD + +D D+E DNG+D Sbjct 176 GRRGRGRGRGEQGANDGQDQPGDDGDE--APQKTGGNSTSSDDTEAQDGADSEESDNGDD 233 Query 221 ENGSLEAGNRRRRRRRRRKSASGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQDG 280 +NGS + NRRRRRRRRRKS +GDD D EGP PDDPPNTVVHER PR+G K+GNS G Sbjct 234 DNGSADGANRRRRRRRRRKSGAGDDGD---EGPAPDDPPNTVVHERAPRSGGKSGNSDSG 290 Query 281 G-SGSTEIKGIDGSTRLEAKRQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRV 339 SG EIKGIDGSTRLEAKRQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRV Sbjct 291 DDSGGNEIKGIDGSTRLEAKRQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRV 350 Query 340 RTEPPLPGTRYTQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGR 399 RTEPP PG+RYTQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGR Sbjct 351 RTEPPHPGSRYTQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGR 410 Query 400 GRNGVLYAGEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGR 459 GRNGVLYAGEVNWDAAGLGGADRKIEQALKPGDY+VVQVSKDPVGHKGARLTTQVSLAGR Sbjct 411 GRNGVLYAGEVNWDAAGLGGADRKIEQALKPGDYIVVQVSKDPVGHKGARLTTQVSLAGR 470 Query 460 FLVYVPGASSTGISRKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARL 519 +LVYVPGASSTGISRKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADV RL Sbjct 471 YLVYVPGASSTGISRKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVTRL 530 Query 520 RERWEQIEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINE 579 +ERW QIEAKA E K+KAAGAAVALYEEPDVLVKVIRDLFNEDF GL+VSGD+AW+TINE Sbjct 531 QERWNQIEAKAVEIKQKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLVVSGDDAWDTINE 590 Query 580 YVNSVAPELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDR 639 YV+SVAP+LVSKL+KYE A G +GQ PDVF VHRIDEQLAKAMDRKVWLPSGGTLVIDR Sbjct 591 YVSSVAPDLVSKLSKYEPAVGSEGQVGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDR 650 Query 640 TEAMTVIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLES 699 TEAMTV+DVNTGKFTG+GGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLES Sbjct 651 TEAMTVVDVNTGKFTGSGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLES 710 Query 700 NRDLVLRRLTESLARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILL 759 NRDLVLRRLTE+LARDRTRHQVSEVTSLGLVQLTRKRLGTGL+EAFSTSCP+CSGRGILL Sbjct 711 NRDLVLRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTSCPHCSGRGILL 770 Query 760 HADPVDSAAATGRKSEPGARRGKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAAGL 819 HADPVDSA TGRK++ G RR +RSKK+R+EE S++ VAKVP HAPGEHPMFKAMAA Sbjct 771 HADPVDSAPTTGRKADSGGRRNRRSKKNRAEEPSEKEAVAKVPTHAPGEHPMFKAMAASS 830 Query 820 SSLAGRGDEESGEPAAELAEQAGDQ 844 SS A GD E E EL DQ Sbjct 831 SSEAEHGDGEVEESGEELTAAVDDQ 855 >gi|118618976|ref|YP_907308.1| ribonuclease E Rne [Mycobacterium ulcerans Agy99] gi|118571086|gb|ABL05837.1| ribonuclease E Rne [Mycobacterium ulcerans Agy99] Length=988 Score = 1145 bits (2963), Expect = 0.0, Method: Compositional matrix adjust. Identities = 682/862 (80%), Positives = 732/862 (85%), Gaps = 28/862 (3%) Query 1 VIDGAPPSDPP-EPSQHEELPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDR 59 ++DGAP SDP EP+Q E+LPDRLRVHSLARTLGT+SRRVLDAL+ALDGR+RSAHS+VDR Sbjct 1 MVDGAPSSDPENEPTQREDLPDRLRVHSLARTLGTSSRRVLDALSALDGRIRSAHSSVDR 60 Query 60 VDAVRVRDLLATHLETAG----------VLAASV-HAPEASEEPESRLMLETQETRNA-- 106 VDAVRVRDLLA G +AA V AP EPESRLMLETQET Sbjct 61 VDAVRVRDLLAEQPAEEGQAEEDQQAPDAVAAEVPDAPGEPAEPESRLMLETQETVQVVE 120 Query 107 -DVERPHYMPLFVAPQPIPEPLADDEDVDDGPDYVADDSDADDEGQLDRPANRRRRRGRR 165 VERPHYMPLFVAPQPI EP+A D+ D + D DDE Q DRP NRRRRRGRR Sbjct 121 TWVERPHYMPLFVAPQPISEPVAGDD-----ADDESGDEGDDDEEQADRPGNRRRRRGRR 175 Query 166 GRGRGRGEQGGSDGD--PVDQQSEPRAQQFTSADAAETDDGDDRDSEDTEAGDNGEDENG 223 GRGRGRGEQG +DG P D E A Q ++ +DD + +D D+E DNG+D+NG Sbjct 176 GRGRGRGEQGANDGQDQPGDDGDE--APQKAGGNSTSSDDSEAQDGADSEESDNGDDDNG 233 Query 224 SLEAGNRRRRRRRRRKSASGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQDGG-S 282 S + +RRRRRRRRRKS +GDD D EGP PDDPPNTVVHER PR+GDK+GNS G S Sbjct 234 SADGASRRRRRRRRRKSGAGDDGD---EGPAPDDPPNTVVHERAPRSGDKSGNSDSGDDS 290 Query 283 GSTEIKGIDGSTRLEAKRQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTE 342 G EIKGIDGSTRLEAKRQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTE Sbjct 291 GGNEIKGIDGSTRLEAKRQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTE 350 Query 343 PPLPGTRYTQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRN 402 PP PG+RYTQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRN Sbjct 351 PPHPGSRYTQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRN 410 Query 403 GVLYAGEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLV 462 GVLYAGEVNWDAAGLGGADRKIEQALKPGDY+VVQVSKDPVGHKGARLTTQVSLAGR+LV Sbjct 411 GVLYAGEVNWDAAGLGGADRKIEQALKPGDYIVVQVSKDPVGHKGARLTTQVSLAGRYLV 470 Query 463 YVPGASSTGISRKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRER 522 YV GASSTGISRKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADV RL+ER Sbjct 471 YVAGASSTGISRKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVTRLQER 530 Query 523 WEQIEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVN 582 W QIEAKA E K+KAAGAAVALYEEPDVLVKVIRDLFNEDF GL+VSGD+AW+TINEYV+ Sbjct 531 WNQIEAKAVEIKQKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLVVSGDDAWDTINEYVS 590 Query 583 SVAPELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEA 642 SVAP+LVSKL+KYE A G +GQ PDVF VHRIDE LAKAMDRKVWLPSGGTLVIDRTEA Sbjct 591 SVAPDLVSKLSKYEPAVGSEGQVGPDVFAVHRIDEHLAKAMDRKVWLPSGGTLVIDRTEA 650 Query 643 MTVIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRD 702 MTV+DVNTGKFTG+GGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRD Sbjct 651 MTVVDVNTGKFTGSGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRD 710 Query 703 LVLRRLTESLARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHAD 762 LVLRRLTE+LARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCP+CSGRGILLHAD Sbjct 711 LVLRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPHCSGRGILLHAD 770 Query 763 PVDSAAATGRKSEPGARRGKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAAGLSSL 822 PVDSA TGRK++ G RR +RSKK+R+EE S++ VAKVP +APGEHPMFKAMAA SS Sbjct 771 PVDSAPTTGRKADSGGRRNRRSKKNRAEEPSEKEAVAKVPTYAPGEHPMFKAMAASSSSE 830 Query 823 AGRGDEESGEPAAELAEQAGDQ 844 A GD E E EL DQ Sbjct 831 AEHGDGEVEESGEELTAAVDDQ 852 >gi|118465085|ref|YP_880955.1| Rne protein [Mycobacterium avium 104] gi|118166372|gb|ABK67269.1| Rne protein [Mycobacterium avium 104] Length=949 Score = 1123 bits (2904), Expect = 0.0, Method: Compositional matrix adjust. Identities = 670/851 (79%), Positives = 724/851 (86%), Gaps = 32/851 (3%) Query 1 VIDGAPPSDPPEPSQHE-ELPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDR 59 ++DGAP +DP E S +LPDRLRVHSLARTLGTTS+RVLDAL+ LDGRVRSAHSTVDR Sbjct 1 MVDGAPTADPSEESTRSGDLPDRLRVHSLARTLGTTSKRVLDALSELDGRVRSAHSTVDR 60 Query 60 VDAVRVRDLLATH----LETAGVLAASVHAPEA--SEEPESRLMLETQETRNADVERPHY 113 DAVRVRDLLA LE A AAS P+A + EPESRL+LET + ERPHY Sbjct 61 EDAVRVRDLLAAQPSAELEPAAEDAAS-GGPDAGITGEPESRLLLETPDA----TERPHY 115 Query 114 MPLFVAPQPIPEPLADDEDVDDGPDYVADDSDADDEGQLDRPANRRRRRGRRGRGRGRGE 173 MPLFVAPQP+ E DD D D+ D D D D+ Q DRP++RRRRRGRRGRGRGRGE Sbjct 116 MPLFVAPQPL-ESSDDDGDADETADSDDSDGDDDE--QADRPSSRRRRRGRRGRGRGRGE 172 Query 174 QGGSDGDPVDQQSEPRAQQFTSADAAETDDGDDRDSEDTEAGDNGEDENGSLEAGNRRRR 233 QGGSDG EP+ + + DD D +D+ED + D G+D + + GNRRRR Sbjct 173 QGGSDGPGDGDNDEPQNRGKKGGQSDGDDDSDGQDAEDADDSDTGDDGSA--DGGNRRRR 230 Query 234 RRRRRKSASGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGS 293 RRRRRKS SGDDN+ +GP PDDPPNTVVHER PR G G+ +G S S+EIKGIDGS Sbjct 231 RRRRRKSGSGDDNE---DGPSPDDPPNTVVHERPPRNGKNGGDDGNGSS-SSEIKGIDGS 286 Query 294 TRLEAKRQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQI 353 TRLEAKRQRRRDGRDAGRRRPPVL+EAEFLARREAVERVMVVRDR+RTEPP G+RYTQI Sbjct 287 TRLEAKRQRRRDGRDAGRRRPPVLTEAEFLARREAVERVMVVRDRIRTEPPHQGSRYTQI 346 Query 354 AVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWD 413 AVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNW+ Sbjct 347 AVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWE 406 Query 414 AAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGIS 473 AAGLGG+DRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGR+LVYVPGASSTGIS Sbjct 407 AAGLGGSDRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGASSTGIS 466 Query 474 RKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQET 533 RKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIR DV RL+ERW+QIEAKA E Sbjct 467 RKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRGDVTRLQERWKQIEAKAIEI 526 Query 534 KEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLT 593 KEKAAGAAVALYEEPDVLVKVIRDLFNEDF GLIVSGD+AWNTINEYVNSVAP+LVSK+T Sbjct 527 KEKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLIVSGDDAWNTINEYVNSVAPDLVSKVT 586 Query 594 KYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKF 653 KYE A GPDG PDVF VHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKF Sbjct 587 KYEPATGPDGTPGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKF 646 Query 654 TGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLA 713 TG+GGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTE+LA Sbjct 647 TGSGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTEALA 706 Query 714 RDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRK 773 RDRTRHQVSEVTSLGLVQLTRKRLGTGL+EAFSTSCPNC GRGILLHADPVDSA + GRK Sbjct 707 RDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTSCPNCGGRGILLHADPVDSAPSNGRK 766 Query 774 SEPGARRGKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAAGLSSLAGRGDEESGEP 833 SE G RRG+R KKS++EE +VAKVPVH+PGEHPMFKAMAAG S+ A ++ES Sbjct 767 SESGGRRGRR-KKSKAEE----PVVAKVPVHSPGEHPMFKAMAAGSSTQAASDEDESA-- 819 Query 834 AAELAEQAGDQ 844 AE+AGD+ Sbjct 820 ----AEEAGDE 826 >gi|336458197|gb|EGO37178.1| ribonuclease, Rne/Rng family [Mycobacterium avium subsp. paratuberculosis S397] Length=943 Score = 1119 bits (2895), Expect = 0.0, Method: Compositional matrix adjust. Identities = 669/851 (79%), Positives = 723/851 (85%), Gaps = 32/851 (3%) Query 1 VIDGAPPSDPPEPSQHE-ELPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDR 59 ++DGAP +DP E S +LPDRLRVHSLARTLGTTS+RVLDAL+ LDGRVRSAHSTVDR Sbjct 1 MVDGAPTADPSEESTRSGDLPDRLRVHSLARTLGTTSKRVLDALSELDGRVRSAHSTVDR 60 Query 60 VDAVRVRDLLATHL----ETAGVLAASVHAPEA--SEEPESRLMLETQETRNADVERPHY 113 DAVRVRDLLA E A AAS P+A + EPESRL+LET + ERPHY Sbjct 61 EDAVRVRDLLAAQPSAEPEPAAEDAAS-GGPDAGIAGEPESRLLLETPDA----TERPHY 115 Query 114 MPLFVAPQPIPEPLADDEDVDDGPDYVADDSDADDEGQLDRPANRRRRRGRRGRGRGRGE 173 MPLFVAPQP+ E DD D D+ D D D D+ Q DRP++RRRRRGRRGRGRGRGE Sbjct 116 MPLFVAPQPL-ESSDDDGDADETADSDDSDGDDDE--QADRPSSRRRRRGRRGRGRGRGE 172 Query 174 QGGSDGDPVDQQSEPRAQQFTSADAAETDDGDDRDSEDTEAGDNGEDENGSLEAGNRRRR 233 QGGSDG EP+ + + DD D +D+ED + D G+D + + GNRRRR Sbjct 173 QGGSDGPGDGDDDEPQNRGKKGGQSDGDDDSDGQDAEDADDSDTGDDGSA--DGGNRRRR 230 Query 234 RRRRRKSASGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGS 293 RRRRRKS SGDDN+ +GP PDDPPNTVVHER PR G G+ +G S S+EIKGIDGS Sbjct 231 RRRRRKSGSGDDNE---DGPSPDDPPNTVVHERPPRNGKNGGDDGNGSS-SSEIKGIDGS 286 Query 294 TRLEAKRQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQI 353 TRLEAKRQRRRDGRDAGRRRPPVL+EAEFLARREAVERVMVVRDR+RTEPP G+RYTQI Sbjct 287 TRLEAKRQRRRDGRDAGRRRPPVLTEAEFLARREAVERVMVVRDRIRTEPPHQGSRYTQI 346 Query 354 AVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWD 413 AVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNW+ Sbjct 347 AVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWE 406 Query 414 AAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGIS 473 AAGLGG+DRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGR+LVYVPGASSTGIS Sbjct 407 AAGLGGSDRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGASSTGIS 466 Query 474 RKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQET 533 RKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIR DV RL+ERW+QIEAKA E Sbjct 467 RKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRGDVTRLQERWKQIEAKAIEI 526 Query 534 KEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLT 593 KEKAAGAAVALYEEPDVLVKVIRDLFNEDF GLIVSGD+AWNTINEYVNSVAP+LVSK+T Sbjct 527 KEKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLIVSGDDAWNTINEYVNSVAPDLVSKVT 586 Query 594 KYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKF 653 KYE A GPDG PDVF VHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKF Sbjct 587 KYEPATGPDGTPGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKF 646 Query 654 TGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLA 713 TG+GGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTE+LA Sbjct 647 TGSGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTEALA 706 Query 714 RDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRK 773 RDRTRHQVSEVTSLGLVQLTRKRLGTGL+EAFSTSCPNC GRGILLHADPVDSA + GRK Sbjct 707 RDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTSCPNCGGRGILLHADPVDSAPSNGRK 766 Query 774 SEPGARRGKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAAGLSSLAGRGDEESGEP 833 SE G RRG+R KKS++EE +VAKVPVH+PGEHPMFKAMAAG S+ A ++ES Sbjct 767 SESGGRRGRR-KKSKAEE----PVVAKVPVHSPGEHPMFKAMAAGSSTQAASDEDESA-- 819 Query 834 AAELAEQAGDQ 844 AE+AGD+ Sbjct 820 ----AEEAGDE 826 >gi|41408365|ref|NP_961201.1| Rne [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396721|gb|AAS04584.1| Rne [Mycobacterium avium subsp. paratuberculosis K-10] Length=946 Score = 1119 bits (2895), Expect = 0.0, Method: Compositional matrix adjust. Identities = 669/851 (79%), Positives = 723/851 (85%), Gaps = 32/851 (3%) Query 1 VIDGAPPSDPPEPSQHE-ELPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDR 59 ++DGAP +DP E S +LPDRLRVHSLARTLGTTS+RVLDAL+ LDGRVRSAHSTVDR Sbjct 1 MVDGAPTADPSEESTRSGDLPDRLRVHSLARTLGTTSKRVLDALSELDGRVRSAHSTVDR 60 Query 60 VDAVRVRDLLATHL----ETAGVLAASVHAPEA--SEEPESRLMLETQETRNADVERPHY 113 DAVRVRDLLA E A AAS P+A + EPESRL+LET + ERPHY Sbjct 61 EDAVRVRDLLAAQPSAEPEPAAEDAAS-GGPDAGIAGEPESRLLLETPDA----TERPHY 115 Query 114 MPLFVAPQPIPEPLADDEDVDDGPDYVADDSDADDEGQLDRPANRRRRRGRRGRGRGRGE 173 MPLFVAPQP+ E DD D D+ D D D D+ Q DRP++RRRRRGRRGRGRGRGE Sbjct 116 MPLFVAPQPL-ESSDDDGDADETADSDDSDGDDDE--QADRPSSRRRRRGRRGRGRGRGE 172 Query 174 QGGSDGDPVDQQSEPRAQQFTSADAAETDDGDDRDSEDTEAGDNGEDENGSLEAGNRRRR 233 QGGSDG EP+ + + DD D +D+ED + D G+D + + GNRRRR Sbjct 173 QGGSDGPGDGDDDEPQNRGKKGGQSDGDDDSDGQDAEDADDSDTGDDGSA--DGGNRRRR 230 Query 234 RRRRRKSASGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGS 293 RRRRRKS SGDDN+ +GP PDDPPNTVVHER PR G G+ +G S S+EIKGIDGS Sbjct 231 RRRRRKSGSGDDNE---DGPSPDDPPNTVVHERPPRNGKNGGDDGNGSS-SSEIKGIDGS 286 Query 294 TRLEAKRQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQI 353 TRLEAKRQRRRDGRDAGRRRPPVL+EAEFLARREAVERVMVVRDR+RTEPP G+RYTQI Sbjct 287 TRLEAKRQRRRDGRDAGRRRPPVLTEAEFLARREAVERVMVVRDRIRTEPPHQGSRYTQI 346 Query 354 AVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWD 413 AVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNW+ Sbjct 347 AVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWE 406 Query 414 AAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGIS 473 AAGLGG+DRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGR+LVYVPGASSTGIS Sbjct 407 AAGLGGSDRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGASSTGIS 466 Query 474 RKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQET 533 RKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIR DV RL+ERW+QIEAKA E Sbjct 467 RKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRGDVTRLQERWKQIEAKAIEI 526 Query 534 KEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLT 593 KEKAAGAAVALYEEPDVLVKVIRDLFNEDF GLIVSGD+AWNTINEYVNSVAP+LVSK+T Sbjct 527 KEKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLIVSGDDAWNTINEYVNSVAPDLVSKVT 586 Query 594 KYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKF 653 KYE A GPDG PDVF VHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKF Sbjct 587 KYEPATGPDGTPGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKF 646 Query 654 TGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLA 713 TG+GGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTE+LA Sbjct 647 TGSGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTEALA 706 Query 714 RDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRK 773 RDRTRHQVSEVTSLGLVQLTRKRLGTGL+EAFSTSCPNC GRGILLHADPVDSA + GRK Sbjct 707 RDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTSCPNCGGRGILLHADPVDSAPSNGRK 766 Query 774 SEPGARRGKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAAGLSSLAGRGDEESGEP 833 SE G RRG+R KKS++EE +VAKVPVH+PGEHPMFKAMAAG S+ A ++ES Sbjct 767 SESGGRRGRR-KKSKAEE----PVVAKVPVHSPGEHPMFKAMAAGSSTQAASDEDESA-- 819 Query 834 AAELAEQAGDQ 844 AE+AGD+ Sbjct 820 ----AEEAGDE 826 >gi|296170489|ref|ZP_06852076.1| ribonuclease E [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894841|gb|EFG74563.1| ribonuclease E [Mycobacterium parascrofulaceum ATCC BAA-614] Length=945 Score = 1082 bits (2797), Expect = 0.0, Method: Compositional matrix adjust. Identities = 646/824 (79%), Positives = 699/824 (85%), Gaps = 18/824 (2%) Query 1 VIDGAPPSDPPE-PSQHEELPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDR 59 ++DGAP ++ E P++H+ELPDRLRVHSLARTLGTTS+RVLDAL+ALDGR+RSAHSTVDR Sbjct 1 MVDGAPSAESSEEPTRHDELPDRLRVHSLARTLGTTSKRVLDALSALDGRIRSAHSTVDR 60 Query 60 VDAVRVRDLLATHLETAGVLAASVHAPEASEEPESRLMLETQETRNADVERPHYMPLFVA 119 DAVRVRDLLA + A S +A A+EEPESRLMLET ERPHYMPLFVA Sbjct 61 DDAVRVRDLLAAQPDGGAEGAGSENAQAAAEEPESRLMLETAG------ERPHYMPLFVA 114 Query 120 PQPIPEPLADDEDVDDGPDYVADDSDADDEGQLDRPANRRRRRGRRGRGRGRGEQGGSDG 179 PQPI + D + D D D +D+ Q DRPANRRRRRGRRGRGRGRGEQGG DG Sbjct 115 PQPIEAEERANADEAESDDSDDSDGDDEDDEQTDRPANRRRRRGRRGRGRGRGEQGGPDG 174 Query 180 DPV---DQQSEPRAQQFTSADAAETDDGDDRDSEDTEAGDNGEDENGSLEAGNRRRRRRR 236 D + + R Q+ DA D DD S+ +++ D+ ++GS E +RRRRRRR Sbjct 175 QNDSGDDDEPQQRRQKAGRGDADAEDGDDDDSSDYSDSDDSENGDDGSGEGASRRRRRRR 234 Query 237 RRKSASGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRL 296 RRKS SGDD D E DDPPNTVVHER PR G G+ +G S + EIKGIDGSTRL Sbjct 235 RRKSGSGDDGD---ESSSTDDPPNTVVHERAPRGGKNGGDGGNGSS-NAEIKGIDGSTRL 290 Query 297 EAKRQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVL 356 EAKRQRRRDGRDAGRRRPPVL+EAEFLARREAVERVMVVRDRVRTEPP G RYTQIAVL Sbjct 291 EAKRQRRRDGRDAGRRRPPVLTEAEFLARREAVERVMVVRDRVRTEPPHQGARYTQIAVL 350 Query 357 EDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAG 416 EDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNW+AAG Sbjct 351 EDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAAG 410 Query 417 LGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKL 476 LGG+DRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGR+LVYVPGASSTGISRKL Sbjct 411 LGGSDRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGASSTGISRKL 470 Query 477 PDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEK 536 PDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIR DV RL+ERW QIEAKA E EK Sbjct 471 PDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRGDVTRLQERWRQIEAKATEITEK 530 Query 537 AAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYE 596 AAGAAVALYEEPDVLVKVIRDLFNEDF GLIVSGDEAW TI +YVNSVAP+LV KL+KYE Sbjct 531 AAGAAVALYEEPDVLVKVIRDLFNEDFAGLIVSGDEAWTTITDYVNSVAPDLVPKLSKYE 590 Query 597 SADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGA 656 GP+GQ+ PDVF VHRIDEQLAKAM+RKVWLPSGGTLVIDRTEAMTV+DVNTGKFTG+ Sbjct 591 PPSGPEGQAGPDVFAVHRIDEQLAKAMERKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGS 650 Query 657 GGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDR 716 GGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTE+LARDR Sbjct 651 GGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTEALARDR 710 Query 717 TRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRKSEP 776 TRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSC +C GRGI+LH DPVDSA + GRKSE Sbjct 711 TRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCTHCGGRGIVLHTDPVDSAPSNGRKSES 770 Query 777 GARRGKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAAGLS 820 G RRG+RSKK+R+EE +VAKVP H+PGEHPMFKAMAAG S Sbjct 771 GGRRGRRSKKNRAEE----PVVAKVPAHSPGEHPMFKAMAAGGS 810 >gi|342857842|ref|ZP_08714498.1| ribonuclease [Mycobacterium colombiense CECT 3035] gi|342135175|gb|EGT88341.1| ribonuclease [Mycobacterium colombiense CECT 3035] Length=929 Score = 1064 bits (2752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 648/832 (78%), Positives = 706/832 (85%), Gaps = 30/832 (3%) Query 23 LRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDRVDAVRVRDLLATHLETAGVLAAS 82 +RVHSLARTLGTTS+RVLDAL+ LDGR+RSAHSTVDR DAVRVRDLLA+ AG A Sbjct 1 MRVHSLARTLGTTSKRVLDALSELDGRIRSAHSTVDRDDAVRVRDLLASAQPPAGAEDAD 60 Query 83 VHAPEA---SEEPESRLMLETQETRNADVERPHYMPLFVAPQPIPEPLADDEDVDDGPDY 139 AP A ++EPESRL+LET + NA ERPHYMPLFVAPQPI A ++D Sbjct 61 -GAPTAGAEADEPESRLLLETPD--NA-AERPHYMPLFVAPQPID---AREDDTGADDGA 113 Query 140 VADDSDADDEGQLDRPANRRRRRGRRGRGRGRGEQGGSDGDPVDQ---QSEPRAQQFTSA 196 +DD+D +D+ Q DRP+NRRRRRGRRGRGRGRGEQGGSD D + +PR ++ A Sbjct 114 DSDDADGEDDEQSDRPSNRRRRRGRRGRGRGRGEQGGSDDQGDDGDDDERQPRGKKGGQA 173 Query 197 DAAETDDGDDRDSEDTEAGDNGEDENGSLEAGNRRRRRRRRRKSASGDDNDAALEGPLPD 256 DA ++D D DS+D++ DNG+D + + GNRRRRRRRRRKS SGDDND E PD Sbjct 174 DAEDSDGQDSDDSDDSDDSDNGDDGSA--DGGNRRRRRRRRRKSGSGDDND---ESSSPD 228 Query 257 DPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKRQRRRDGRDAGRRRPPV 316 DPPNTVVHER PR+G G+ + EIKGI+GSTRLEAKRQRRRDGRDAGRRRPPV Sbjct 229 DPPNTVVHERAPRSGKGGGDDSG--GSNNEIKGINGSTRLEAKRQRRRDGRDAGRRRPPV 286 Query 317 LSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGIVVEHFVTSAASASLVG 376 L+EAEFLARREAVER+MVVRDRVRTEPP G RYTQIAVLEDGIVVEHFVTSAASASLVG Sbjct 287 LTEAEFLARREAVERMMVVRDRVRTEPPHQGARYTQIAVLEDGIVVEHFVTSAASASLVG 346 Query 377 NIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGADRKIEQALKPGDYVVV 436 NIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNW+AAGLGG+DRKIEQALKPGDYVVV Sbjct 347 NIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAAGLGGSDRKIEQALKPGDYVVV 406 Query 437 QVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTERQRLKEILREVVPSDA 496 QVSKDPVGHKGARLTTQVSLAGR+LVYVPGASSTGISRKLPDTERQRLKEILREVVPSDA Sbjct 407 QVSKDPVGHKGARLTTQVSLAGRYLVYVPGASSTGISRKLPDTERQRLKEILREVVPSDA 466 Query 497 GVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGAAVALYEEPDVLVKVIR 556 GVIIRTASEGVKE+DIR+DVARL+ERW+QIEAKA E KEKAAGAAVALYEEPDVLVKVIR Sbjct 467 GVIIRTASEGVKEEDIRSDVARLQERWKQIEAKAIEIKEKAAGAAVALYEEPDVLVKVIR 526 Query 557 DLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADGPDGQSAPDVFTVHRID 616 DLFNEDF GLIVSGDEAW TIN+YVNSVAP+LVSKLTKYE+ GP+GQ+ PDVF VHRID Sbjct 527 DLFNEDFAGLIVSGDEAWTTINDYVNSVAPDLVSKLTKYEAPAGPEGQAGPDVFAVHRID 586 Query 617 EQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIV 676 EQLAKAM+RKVWLPSGGTLVIDRTEAMTV+DVNTGKFTG+GGNLEQTVTKNNLEAAEEIV Sbjct 587 EQLAKAMERKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGSGGNLEQTVTKNNLEAAEEIV 646 Query 677 RQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQVSEVTSLGLVQLTRKR 736 RQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTE+LARDRTRHQVSEVTSLGLVQLTRKR Sbjct 647 RQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQLTRKR 706 Query 737 LGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRKSEP-GARRGKRSKKSRSEESSDR 795 LGTGLIEAFSTSC NC GRGILLH DPVDSA + GRKSE G R R KK+++EE Sbjct 707 LGTGLIEAFSTSCSNCGGRGILLHTDPVDSAPSNGRKSESGGGGRRGRRKKNKAEE---- 762 Query 796 SMVAKVPVHAPGEHPMFKAMAAGLSSLAGRGDEESGEPAAEL----AEQAGD 843 +VAKVP HAPGEHPMFKAMAAG S+ DE + E EL A +AGD Sbjct 763 PVVAKVPTHAPGEHPMFKAMAAG-SATQSEDDETTEEATDELDREKAGRAGD 813 >gi|240170915|ref|ZP_04749574.1| ribonuclease E Rne [Mycobacterium kansasii ATCC 12478] Length=966 Score = 1058 bits (2735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 654/868 (76%), Positives = 703/868 (81%), Gaps = 55/868 (6%) Query 39 VLDALTALDGRVRSAHSTVDRVDAVRVRDLLATHLETAGVLAASVHAPEASE-------- 90 +LDAL ALDGR+RSAHS+VDRVDAVRVRDLLA + PE + Sbjct 1 MLDALNALDGRIRSAHSSVDRVDAVRVRDLLAETPIEEPANEPNQAKPEENAELGVAAAA 60 Query 91 --------------------------EPESRLMLETQETRNA---DVERPHYMPLFVAPQ 121 EPESRL+LETQET VERPHY+PLFVAPQ Sbjct 61 VAPGEADDEADDEADYEADYEADEAPEPESRLLLETQETVQVVETWVERPHYLPLFVAPQ 120 Query 122 PIPEPLADDEDVDDGPDYVADDSDADDEGQLDRPANRRRRRGRRGRGRGRGEQGGSDGDP 181 PIPE A DED + D D D+ Q+DRP+ RRRRRGRRGRGRGRGEQGGSDG Sbjct 121 PIPE--AIDEDNGTDDEAADDSDDDDEHEQIDRPSGRRRRRGRRGRGRGRGEQGGSDGPG 178 Query 182 VDQQSEPRAQQFTSADAAETDDGDDRDSEDTEAGDNGEDENGSLEAGNRRRRRRRRRKSA 241 D E + + ++ + DD D D G+D+NGS E +RRRRRRRRRKS Sbjct 179 EDDGDEADRKANGDSARSDDSESDDAADSDDTDTDAGDDDNGSAEGASRRRRRRRRRKSG 238 Query 242 SGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKRQ 301 SG+D D EGP PDDPPNTVVHER PR G AG+ + SGS EIKGIDGSTRLEAKRQ Sbjct 239 SGEDGD---EGPAPDDPPNTVVHERAPRNG-GAGDEE---SGSNEIKGIDGSTRLEAKRQ 291 Query 302 RRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGIV 361 RRRDGRDAGRRRPPVL+EAEFLARREAVERVMVVRDRVRTEPP PGTRYTQIAVLEDGIV Sbjct 292 RRRDGRDAGRRRPPVLTEAEFLARREAVERVMVVRDRVRTEPPHPGTRYTQIAVLEDGIV 351 Query 362 VEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGAD 421 VEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGAD Sbjct 352 VEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGAD 411 Query 422 RKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTER 481 RKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGR+LVYVPGASSTGISRKLPDTER Sbjct 412 RKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGASSTGISRKLPDTER 471 Query 482 QRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGAA 541 QRLKEILREVVPSDAGVIIRTASEGVKE DIRADV RL+ERW+QIEAKA E K+KAAGAA Sbjct 472 QRLKEILREVVPSDAGVIIRTASEGVKEGDIRADVTRLQERWQQIEAKAAEVKQKAAGAA 531 Query 542 VALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADGP 601 VALYEEPDVLVKVIRDLFNEDF GLIVSGDEAW TIN+YVNSVAP+LVSKLTKYE A+ Sbjct 532 VALYEEPDVLVKVIRDLFNEDFAGLIVSGDEAWTTINDYVNSVAPDLVSKLTKYEPAELA 591 Query 602 DGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNLE 661 +GQ+ PDVF VHRIDEQL KAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTG+GGNLE Sbjct 592 EGQTRPDVFAVHRIDEQLTKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGSGGNLE 651 Query 662 QTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQV 721 QTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTE+LARDRTRHQV Sbjct 652 QTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTEALARDRTRHQV 711 Query 722 SEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRKSEPGARRG 781 SEVTSLGLVQLTRKRLGTGLIEAFS+SCP CSGRGILLHADPVD+A ATGRKSE G RR Sbjct 712 SEVTSLGLVQLTRKRLGTGLIEAFSSSCPQCSGRGILLHADPVDAAPATGRKSESGGRRN 771 Query 782 KRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAAGLSSLAGRGDEESGEPAAELAEQA 841 +RSKKSR+EE SD+ +VAKVP HAPGEHPMFKAMAAG S GRGD GEP E++ Sbjct 772 RRSKKSRAEEPSDKGIVAKVPAHAPGEHPMFKAMAAGSSLGPGRGD---GEP-----EES 823 Query 842 GDQPPTDLD-DTAQADFEDTEDTDEDED 868 G++ +D +TA A + +D +ED D Sbjct 824 GEEFAAAIDEETAVAVSDGIDDLEEDAD 851 >gi|254774544|ref|ZP_05216060.1| Rne protein [Mycobacterium avium subsp. avium ATCC 25291] Length=749 Score = 997 bits (2577), Expect = 0.0, Method: Compositional matrix adjust. Identities = 536/619 (87%), Positives = 567/619 (92%), Gaps = 15/619 (2%) Query 226 EAGNRRRRRRRRRKSASGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQDGGSGST 285 + GNRRRRRRRRRKS SGDDN+ +GP PDDPPNTVVHER PR G G+ +G S S+ Sbjct 26 DGGNRRRRRRRRRKSGSGDDNE---DGPSPDDPPNTVVHERPPRNGKNGGDDGNGSS-SS 81 Query 286 EIKGIDGSTRLEAKRQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPL 345 EIKGIDGSTRLEAKRQRRRDGRDAGRRRPPVL+EAEFLARREAVERVMVVRDR+RTEPP Sbjct 82 EIKGIDGSTRLEAKRQRRRDGRDAGRRRPPVLTEAEFLARREAVERVMVVRDRIRTEPPH 141 Query 346 PGTRYTQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVL 405 G+RYTQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVL Sbjct 142 QGSRYTQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVL 201 Query 406 YAGEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVP 465 YAGEVNW+AAGLGG+DRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGR+LVYVP Sbjct 202 YAGEVNWEAAGLGGSDRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVP 261 Query 466 GASSTGISRKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQ 525 GASSTGISRKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIR DV RL+ERW+Q Sbjct 262 GASSTGISRKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRGDVTRLQERWKQ 321 Query 526 IEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVA 585 IEAKA E KEKAAGAAVALYEEPDVLVKVIRDLFNEDF GLIVSGD+AWNTINEYVNSVA Sbjct 322 IEAKAIEIKEKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLIVSGDDAWNTINEYVNSVA 381 Query 586 PELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTV 645 P+LVSK+TKYE A GPDG PDVF VHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTV Sbjct 382 PDLVSKVTKYEPATGPDGTPGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTV 441 Query 646 IDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVL 705 IDVNTGKFTG+GGNLEQTVTKNNLEA EEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVL Sbjct 442 IDVNTGKFTGSGGNLEQTVTKNNLEAVEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVL 501 Query 706 RRLTESLARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVD 765 RRLTE+LARDRTRHQVSEVTSLGLVQLTRKRLGTGL+EAFSTSCPNC GRGILLHADPVD Sbjct 502 RRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTSCPNCGGRGILLHADPVD 561 Query 766 SAAATGRKSEPGARRGKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAAGLSSLAGR 825 SA + GRKSE G RRG+R KKS++EE +VAKVPVH+PGEHPMFKAMAAG S+ A Sbjct 562 SAPSNGRKSESGGRRGRR-KKSKAEE----PVVAKVPVHSPGEHPMFKAMAAGSSTQAAS 616 Query 826 GDEESGEPAAELAEQAGDQ 844 ++ES AE+AGD+ Sbjct 617 DEDESA------AEEAGDE 629 >gi|254819897|ref|ZP_05224898.1| Rne [Mycobacterium intracellulare ATCC 13950] Length=709 Score = 986 bits (2549), Expect = 0.0, Method: Compositional matrix adjust. Identities = 531/621 (86%), Positives = 562/621 (91%), Gaps = 12/621 (1%) Query 239 KSASGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEA 298 KS SGDDND EGP PDDPPNTVVHER PR G G DGGS S EIKGIDGSTRLEA Sbjct 21 KSGSGDDND---EGPSPDDPPNTVVHERPPRNGKNGG---DGGSASNEIKGIDGSTRLEA 74 Query 299 KRQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLED 358 KRQRRRDGRDAGRRRPPVL+EAEFLARREAVERVMVVRDRVR+EPP G+RYTQIAVLED Sbjct 75 KRQRRRDGRDAGRRRPPVLTEAEFLARREAVERVMVVRDRVRSEPPHQGSRYTQIAVLED 134 Query 359 GIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLG 418 GIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNW+AAGLG Sbjct 135 GIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAAGLG 194 Query 419 GADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPD 478 G+DRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGR+LVYVPGASSTGISRKLPD Sbjct 195 GSDRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGASSTGISRKLPD 254 Query 479 TERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAA 538 TERQRLKEILREVVPSDAGVIIRTASEGVKEDDIR DV RL+ERW+QIEAKA E KEKAA Sbjct 255 TERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRNDVTRLQERWKQIEAKAIEIKEKAA 314 Query 539 GAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESA 598 GAAVALYEEPDVLVKVIRDLFNEDF GL+VSGDEAWNTINEYVNSVAP+LVSKL+KYE Sbjct 315 GAAVALYEEPDVLVKVIRDLFNEDFAGLVVSGDEAWNTINEYVNSVAPDLVSKLSKYEPP 374 Query 599 DGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGG 658 GPDG S PDVF VHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTV+DVNTGKFTG+GG Sbjct 375 AGPDGSSGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGSGG 434 Query 659 NLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTR 718 NLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTE+LARDRTR Sbjct 435 NLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTEALARDRTR 494 Query 719 HQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRKSEPGA 778 HQVSEVTSLGLVQLTRKRLGTGL+EAFSTSCPNC GRGILLH DPVDSA + GRKSE G Sbjct 495 HQVSEVTSLGLVQLTRKRLGTGLVEAFSTSCPNCGGRGILLHTDPVDSAPSNGRKSESGG 554 Query 779 RRGKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAAGLSSLAGRGDEESGEPAAELA 838 RRG+R KK+++EE +VAKVPVH+PGEHPMFKAMAAG S+ A D+ES E E + Sbjct 555 RRGRR-KKNKAEE----PVVAKVPVHSPGEHPMFKAMAAGSSTQAASEDDESDEATEETS 609 Query 839 EQAGDQPPTDLDDTAQADFED 859 ++ ++ D +D + AD ED Sbjct 610 DEFDEKARRD-EDVSDADQED 629 >gi|145223221|ref|YP_001133899.1| ribonuclease [Mycobacterium gilvum PYR-GCK] gi|315443679|ref|YP_004076558.1| ribonuclease, Rne/Rng family [Mycobacterium sp. Spyr1] gi|145215707|gb|ABP45111.1| ribonuclease, Rne/Rng family [Mycobacterium gilvum PYR-GCK] gi|315261982|gb|ADT98723.1| ribonuclease, Rne/Rng family [Mycobacterium sp. Spyr1] Length=1016 Score = 946 bits (2444), Expect = 0.0, Method: Compositional matrix adjust. Identities = 581/871 (67%), Positives = 644/871 (74%), Gaps = 73/871 (8%) Query 13 PSQHEELP--DRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDRVDAVRVRDLLA 70 PSQ + P ++LRVHSLAR LGTTSRR++DAL LDGR RSAHSTV +A RVR++LA Sbjct 25 PSQAKSAPASEKLRVHSLARVLGTTSRRIIDALAELDGRARSAHSTVGPDEADRVREVLA 84 Query 71 T-HLETA--GVLAASVHAPEASEEPE-------------------------------SRL 96 ET V + A EA EP+ SRL Sbjct 85 APEPETTPEQVTEVATDAVEAQAEPQPEAQAQSEAQAQPQPGPEAPAPEAPAEEEPESRL 144 Query 97 MLETQETRNADVERPHYMPLFVAPQPI-----PEPLADDEDVDDGPDYVADDSDADDEGQ 151 +LET + + E Y+PLFVAPQP+ E DD++ D D D+ Q Sbjct 145 ILETP-SAPSTAEPADYLPLFVAPQPVRFEDRYEDSDDDDEDASDSDDSDDSDSDSDDDQ 203 Query 152 LDRPANRRRRRGRRGRGRGRGEQGGSDGDPVDQQSEPRAQQFTSADAAETDDGDDRDSED 211 RPA +RRRRGRRGRGRGRGEQ G EP S AET+ DSED Sbjct 204 SGRPAAKRRRRGRRGRGRGRGEQNG---------DEPSDADGDSDGDAETEKARSDDSED 254 Query 212 TEAGDNGEDENGSLEAGNRRRRRRRRRKSASGDDNDAALEGPLPDDPPNTVVHERVPRAG 271 D+ D++G+ RRRRRRRR+ + DD++ + G PDDPPNTVVHER PR Sbjct 255 DNGEDDNGDDDGAGGDAGTRRRRRRRRRKSGSDDDNGS--GGSPDDPPNTVVHEREPRKS 312 Query 272 DKAGNSQDGGSGSTEIKGIDGSTRLEAKRQRRRDGRDAGRRRPPVLSEAEFLARREAVER 331 +A D G S EI+GI GSTRLEAKRQRRRDGRDAGRRRPP+LSEAEFLARREAVER Sbjct 313 GRA----DKGDKSDEIQGISGSTRLEAKRQRRRDGRDAGRRRPPILSEAEFLARREAVER 368 Query 332 VMVVRDRVRTEPPLPGTRYTQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSME 391 MVVRD+VRTEPP G RYTQIAVLEDG+VVEHFVTSAA SLVGNIYLGIVQNVLPSME Sbjct 369 TMVVRDKVRTEPPHEGARYTQIAVLEDGVVVEHFVTSAAQVSLVGNIYLGIVQNVLPSME 428 Query 392 AAFVDIGRGRNGVLYAGEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLT 451 AAFVDIGRGRNGVLYAGEVNW+AAGLGGA RKIEQALKPGDYVVVQVSKDPVGHKGARLT Sbjct 429 AAFVDIGRGRNGVLYAGEVNWEAAGLGGAQRKIEQALKPGDYVVVQVSKDPVGHKGARLT 488 Query 452 TQVSLAGRFLVYVPGASSTGISRKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDD 511 TQVSLAGR+LVYVPGASSTGISRKLPDTERQRLKEILREVVPS+AGVIIRTASEGVKEDD Sbjct 489 TQVSLAGRYLVYVPGASSTGISRKLPDTERQRLKEILREVVPSNAGVIIRTASEGVKEDD 548 Query 512 IRADVARLRERWEQIEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGD 571 IR DV RL++RW IEAKA E K AGAAVALYEEPDVLVKVIRDLFNEDF LIVSGD Sbjct 549 IRTDVERLQKRWTDIEAKAAEVTAKKAGAAVALYEEPDVLVKVIRDLFNEDFSNLIVSGD 608 Query 572 EAWNTINEYVNSVAPELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPS 631 +AW TI++YV +VAPEL+ ++T+YE A P+ +APDVF VHRIDEQLAKAMDRKV+LPS Sbjct 609 QAWKTIDDYVTAVAPELLPRITRYEPAGSPEAGTAPDVFAVHRIDEQLAKAMDRKVYLPS 668 Query 632 GGTLVIDRTEAMTVIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVID 691 GGTLVIDRTEAMTV+DVNTGKFTG+GGNLEQTVT+NNLEAAEE VRQLRLRDIGGIVVID Sbjct 669 GGTLVIDRTEAMTVVDVNTGKFTGSGGNLEQTVTRNNLEAAEETVRQLRLRDIGGIVVID 728 Query 692 FIDMVLESNRDLVLRRLTESLARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPN 751 FIDMVLESNRDLVLRRLTE+LARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFST+C + Sbjct 729 FIDMVLESNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTTCTH 788 Query 752 CSGRGILLHADPVDSAAAT-GRKSEPGARRGKRSKKSRSEESSDRS---------MVAKV 801 CSGRGI+LH DPVDS++ + GRK++ G S V KV Sbjct 789 CSGRGIMLHGDPVDSSSGSNGRKADSGGGGNGGGGGGGGRRSRRGKRGAKPEPEVQVTKV 848 Query 802 PVHAPGEHPMFKAMAAGLSSLAGRGDEESGE 832 P H PGEHPMFKAMA A G +E GE Sbjct 849 PAHLPGEHPMFKAMA------AANGKDEDGE 873 >gi|108800517|ref|YP_640714.1| ribonuclease [Mycobacterium sp. MCS] gi|119869656|ref|YP_939608.1| ribonuclease [Mycobacterium sp. KMS] gi|108770936|gb|ABG09658.1| ribonuclease, Rne/Rng family [Mycobacterium sp. MCS] gi|119695745|gb|ABL92818.1| ribonuclease, Rne/Rng family [Mycobacterium sp. KMS] Length=991 Score = 930 bits (2404), Expect = 0.0, Method: Compositional matrix adjust. Identities = 487/582 (84%), Positives = 519/582 (90%), Gaps = 13/582 (2%) Query 239 KSASGDDNDAALEGPLPDDPPNTVVHERVPRA-GDKAGNSQDGGSGSTEIKGIDGSTRLE 297 KS + DD+D PDDPPNTVVHER PR G K+G+S D EI+GI GSTRLE Sbjct 268 KSGASDDSDNGS----PDDPPNTVVHERPPRERGGKSGDSDD-----NEIQGISGSTRLE 318 Query 298 AKRQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLE 357 AKRQRRRDGRDAGRRRPP+LSEAEFLARREAVERVMVVRD+VRTEPP G RYTQIAVLE Sbjct 319 AKRQRRRDGRDAGRRRPPILSEAEFLARREAVERVMVVRDKVRTEPPHEGARYTQIAVLE 378 Query 358 DGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGL 417 DG+VVEHFVTS ASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNW+AAGL Sbjct 379 DGVVVEHFVTSPASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAAGL 438 Query 418 GGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLP 477 GG +RKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGR+LVYVPGASSTGISRKLP Sbjct 439 GGQNRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGASSTGISRKLP 498 Query 478 DTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKA 537 DTERQRLKEILREVVP+DAGVIIRTASEGVKEDDIR+DV RL+ERW QIEAKA E K Sbjct 499 DTERQRLKEILREVVPADAGVIIRTASEGVKEDDIRSDVNRLQERWTQIEAKAAEITAKK 558 Query 538 AGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYES 597 AGAAVALYEEPDVLVKVIRDLFNEDF GLIVSGDEAWNTIN YV SVAP+L+ +LTKYE Sbjct 559 AGAAVALYEEPDVLVKVIRDLFNEDFSGLIVSGDEAWNTINSYVESVAPDLMPRLTKYEP 618 Query 598 ADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAG 657 A P+G+ PDVF VHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTV+DVNTGKFTG+G Sbjct 619 AGNPNGE-GPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGSG 677 Query 658 GNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRT 717 GNLEQTVT+NNLEAAEEIVRQLRLRDIGGI+VIDFIDMVLESNRDLVLRRLTE+LARDRT Sbjct 678 GNLEQTVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLTEALARDRT 737 Query 718 RHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRKSEPG 777 RHQVSEVTSLGLVQLTRKRLGTGLIEAFST CP+C+GRGI+LH DP+D+A+ GRKSEPG Sbjct 738 RHQVSEVTSLGLVQLTRKRLGTGLIEAFSTPCPHCAGRGIVLHGDPIDNASGNGRKSEPG 797 Query 778 -ARRGKRSKK-SRSEESSDRSMVAKVPVHAPGEHPMFKAMAA 817 RR KR KK + EE+ V KVP H GEHPMFKAMAA Sbjct 798 TGRRSKRGKKGGKPEEAPAAVPVIKVPPHPAGEHPMFKAMAA 839 >gi|126436133|ref|YP_001071824.1| ribonuclease [Mycobacterium sp. JLS] gi|126235933|gb|ABN99333.1| ribonuclease, Rne/Rng family [Mycobacterium sp. JLS] Length=987 Score = 930 bits (2404), Expect = 0.0, Method: Compositional matrix adjust. Identities = 487/582 (84%), Positives = 519/582 (90%), Gaps = 13/582 (2%) Query 239 KSASGDDNDAALEGPLPDDPPNTVVHERVPRA-GDKAGNSQDGGSGSTEIKGIDGSTRLE 297 KS + DD+D PDDPPNTVVHER PR G K+G+S D EI+GI GSTRLE Sbjct 268 KSGASDDSDNGS----PDDPPNTVVHERPPRERGGKSGDSDD-----NEIQGISGSTRLE 318 Query 298 AKRQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLE 357 AKRQRRRDGRDAGRRRPP+LSEAEFLARREAVERVMVVRD+VRTEPP G RYTQIAVLE Sbjct 319 AKRQRRRDGRDAGRRRPPILSEAEFLARREAVERVMVVRDKVRTEPPHEGARYTQIAVLE 378 Query 358 DGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGL 417 DG+VVEHFVTS ASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNW+AAGL Sbjct 379 DGVVVEHFVTSPASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAAGL 438 Query 418 GGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLP 477 GG +RKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGR+LVYVPGASSTGISRKLP Sbjct 439 GGQNRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGASSTGISRKLP 498 Query 478 DTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKA 537 DTERQRLKEILREVVP+DAGVIIRTASEGVKEDDIR+DV RL+ERW QIEAKA E K Sbjct 499 DTERQRLKEILREVVPADAGVIIRTASEGVKEDDIRSDVNRLQERWTQIEAKAAEITAKK 558 Query 538 AGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYES 597 AGAAVALYEEPDVLVKVIRDLFNEDF GLIVSGDEAWNTIN YV SVAP+L+ +LTKYE Sbjct 559 AGAAVALYEEPDVLVKVIRDLFNEDFSGLIVSGDEAWNTINSYVESVAPDLMPRLTKYEP 618 Query 598 ADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAG 657 A P+G+ PDVF VHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTV+DVNTGKFTG+G Sbjct 619 AGNPNGE-GPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGSG 677 Query 658 GNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRT 717 GNLEQTVT+NNLEAAEEIVRQLRLRDIGGI+VIDFIDMVLESNRDLVLRRLTE+LARDRT Sbjct 678 GNLEQTVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLTEALARDRT 737 Query 718 RHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRKSEPG 777 RHQVSEVTSLGLVQLTRKRLGTGLIEAFST CP+C+GRGI+LH DP+D+A+ GRKSEPG Sbjct 738 RHQVSEVTSLGLVQLTRKRLGTGLIEAFSTPCPHCAGRGIVLHGDPIDNASGNGRKSEPG 797 Query 778 A-RRGKRSKK-SRSEESSDRSMVAKVPVHAPGEHPMFKAMAA 817 RR KR KK + EE+ V KVP H GEHPMFKAMAA Sbjct 798 TGRRSKRGKKGGKPEEAPAAVPVIKVPPHPAGEHPMFKAMAA 839 >gi|120404901|ref|YP_954730.1| ribonuclease [Mycobacterium vanbaalenii PYR-1] gi|119957719|gb|ABM14724.1| ribonuclease, Rne/Rng family [Mycobacterium vanbaalenii PYR-1] Length=961 Score = 920 bits (2379), Expect = 0.0, Method: Compositional matrix adjust. Identities = 483/580 (84%), Positives = 519/580 (90%), Gaps = 15/580 (2%) Query 242 SGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKRQ 301 SG D+D E PDDPPNTVVHER PR K+ N D S +EI+GI GSTRLEAKRQ Sbjct 261 SGSDDDG--ENGSPDDPPNTVVHEREPR---KSANRGDKTSSDSEIQGISGSTRLEAKRQ 315 Query 302 RRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGIV 361 RRRDGRDAGRRRPP+LSEAEFLARREAVER+MV+RD+VRTEPP G RYTQIAVLEDG+V Sbjct 316 RRRDGRDAGRRRPPILSEAEFLARREAVERMMVIRDKVRTEPPHEGARYTQIAVLEDGVV 375 Query 362 VEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGAD 421 VEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNW+AAGLGGA Sbjct 376 VEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAAGLGGAQ 435 Query 422 RKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTER 481 RKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGR+LVYVPGASSTGISRKLPDTER Sbjct 436 RKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGASSTGISRKLPDTER 495 Query 482 QRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGAA 541 QRLKEILREVVPSDAGVIIRTASEGVKE+DIR+DV RL++RW +IEAKA E EK AGAA Sbjct 496 QRLKEILREVVPSDAGVIIRTASEGVKEEDIRSDVERLQKRWTEIEAKAAEITEKKAGAA 555 Query 542 VALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADGP 601 VALYEEPDVLVKVIRDLFNEDF GL VSGD AW TIN+YV +VAPEL+ ++T+YE A P Sbjct 556 VALYEEPDVLVKVIRDLFNEDFTGLTVSGDHAWKTINDYVTAVAPELLPRMTQYEPA-SP 614 Query 602 DGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNLE 661 D APDVF VHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTV+DVNTGKFTG+GGNLE Sbjct 615 D---APDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGSGGNLE 671 Query 662 QTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQV 721 QTVT+NNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTE+LARDRTRHQV Sbjct 672 QTVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTEALARDRTRHQV 731 Query 722 SEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAA-ATGRKSEPGA-R 779 SEVTSLGLVQLTRK+LGTGLIEAFST+C +C+GRGI+LH DPVDS A A GRKSEPG R Sbjct 732 SEVTSLGLVQLTRKKLGTGLIEAFSTTCSHCAGRGIMLHGDPVDSMAPANGRKSEPGTGR 791 Query 780 RGKRSKK-SRSEESSDRSMVAKVPVHAPGEHPMFKAMAAG 818 R KR K+ +R+E+ V KVP H+PGEHPMFKAMAA Sbjct 792 RSKRGKRGARAEQEVP---VVKVPSHSPGEHPMFKAMAAA 828 >gi|289762614|ref|ZP_06521992.1| ribonuclease E rne [Mycobacterium tuberculosis GM 1503] gi|289710120|gb|EFD74136.1| ribonuclease E rne [Mycobacterium tuberculosis GM 1503] Length=463 Score = 912 bits (2356), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/463 (99%), Positives = 463/463 (100%), Gaps = 0/463 (0%) Query 491 VVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGAAVALYEEPDV 550 +VPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGAAVALYEEPDV Sbjct 1 MVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGAAVALYEEPDV 60 Query 551 LVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADGPDGQSAPDVF 610 LVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADGPDGQSAPDVF Sbjct 61 LVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADGPDGQSAPDVF 120 Query 611 TVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNLEQTVTKNNLE 670 TVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNLEQTVTKNNLE Sbjct 121 TVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNLEQTVTKNNLE 180 Query 671 AAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQVSEVTSLGLV 730 AAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQVSEVTSLGLV Sbjct 181 AAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQVSEVTSLGLV 240 Query 731 QLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRKSEPGARRGKRSKKSRSE 790 QLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRKSEPGARRGKRSKKSRSE Sbjct 241 QLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRKSEPGARRGKRSKKSRSE 300 Query 791 ESSDRSMVAKVPVHAPGEHPMFKAMAAGLSSLAGRGDEESGEPAAELAEQAGDQPPTDLD 850 ESSDRSMVAKVPVHAPGEHPMFKAMAAGLSSLAGRGDEESGEPAAELAEQAGDQPPTDLD Sbjct 301 ESSDRSMVAKVPVHAPGEHPMFKAMAAGLSSLAGRGDEESGEPAAELAEQAGDQPPTDLD 360 Query 851 DTAQADFEDTEDTDEDEDELDADEDLEDLDDEDLDEDLDVEDSDSDDEDSDEDAADADVD 910 DTAQADFEDTEDTDEDEDELDADEDLEDLDDEDLDEDLDVEDSDSDDEDSDEDAADADVD Sbjct 361 DTAQADFEDTEDTDEDEDELDADEDLEDLDDEDLDEDLDVEDSDSDDEDSDEDAADADVD 420 Query 911 EEDAAGLDGSPGEVDVPGVTELAPTRPRRRVAGRPAGPPIRLD 953 EEDAAGLDGSPGEVDVPGVTELAPTRPRRRVAGRPAGPPIRLD Sbjct 421 EEDAAGLDGSPGEVDVPGVTELAPTRPRRRVAGRPAGPPIRLD 463 >gi|333990103|ref|YP_004522717.1| ribonuclease E Rne [Mycobacterium sp. JDM601] gi|333486071|gb|AEF35463.1| ribonuclease E Rne [Mycobacterium sp. JDM601] Length=930 Score = 892 bits (2304), Expect = 0.0, Method: Compositional matrix adjust. Identities = 475/581 (82%), Positives = 513/581 (89%), Gaps = 14/581 (2%) Query 239 KSASGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEA 298 K+ +GDD D DDPPNTVVHER PR ++ S+ S EI+GI GSTRLEA Sbjct 217 KTGNGDDEDTGSS----DDPPNTVVHERTPRKTTRSTKSEKSSSDD-EIQGITGSTRLEA 271 Query 299 KRQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLED 358 KRQRRRDGRDAGRRRPP+LSEAEFLARREAVER MVVRDRVRTEPP G RYTQIAVLED Sbjct 272 KRQRRRDGRDAGRRRPPILSEAEFLARREAVERRMVVRDRVRTEPPHTGARYTQIAVLED 331 Query 359 GIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLG 418 G++VEHFVTSAAS SLVGN+YLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNW+AAGLG Sbjct 332 GVMVEHFVTSAASTSLVGNVYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAAGLG 391 Query 419 GADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPD 478 GA+RKIEQALKPGDYVVVQVSKDP+GHKGARLTTQVSLAGR+LVYVPGASSTGISRKLPD Sbjct 392 GANRKIEQALKPGDYVVVQVSKDPIGHKGARLTTQVSLAGRYLVYVPGASSTGISRKLPD 451 Query 479 TERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAA 538 TERQRLKEILREVVP DAGVIIRTASEGVKE+DIRADV RL+ERW QIEA A ETK KAA Sbjct 452 TERQRLKEILREVVPPDAGVIIRTASEGVKEEDIRADVERLQERWNQIEATAAETKSKAA 511 Query 539 GAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESA 598 GAAVALYEEPDVLVKVIRDLFNEDF L+VSGD+AW TIN+YV SVAPELVSKLT+Y + Sbjct 512 GAAVALYEEPDVLVKVIRDLFNEDFSELVVSGDDAWATINDYVGSVAPELVSKLTRYTAT 571 Query 599 DGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGG 658 +GP+GQ+ PDVF VHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTV+DVNTGKFTG+GG Sbjct 572 EGPEGQAGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGSGG 631 Query 659 NLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTR 718 NLE+TVTKNNLEAAEEIVRQLRLRDIGGI+VIDFIDMVLESNRDLVLRRLTE+L RDRTR Sbjct 632 NLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLTEALGRDRTR 691 Query 719 HQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRKSEPG- 777 HQVSEVTSLGLVQLTRKRLGTGLIEAFSTSC +C+GRGI+LHADPVDSAA PG Sbjct 692 HQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCQHCAGRGIMLHADPVDSAA-------PGR 744 Query 778 -ARRGKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAA 817 + R + + +D +VAKVP H PG+HPMFKAMAA Sbjct 745 RSEPSSRRSRRSKKPKADEPVVAKVPAHTPGDHPMFKAMAA 785 >gi|169628697|ref|YP_001702346.1| ribonuclease E [Mycobacterium abscessus ATCC 19977] gi|169240664|emb|CAM61692.1| Possible ribonuclease E Rne [Mycobacterium abscessus] Length=959 Score = 852 bits (2201), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/564 (78%), Positives = 497/564 (89%), Gaps = 29/564 (5%) Query 260 NTVVHERVPRA--GDKAGNSQDGGSGSTEIKGIDGSTRLEAKRQRRRDGRDAGRRRPPVL 317 NTVVHER PRA GD EI+GI GSTRLEAKRQRRRDGRDAGRRRPP+L Sbjct 304 NTVVHERKPRAERGD-------------EIQGISGSTRLEAKRQRRRDGRDAGRRRPPIL 350 Query 318 SEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGIVVEHFVTSAASASLVGN 377 +EAEFLARREAV+RVMVVRD+ R+EPP G RYTQIAVLEDG++VEHFVTSAASASLVGN Sbjct 351 TEAEFLARREAVDRVMVVRDKTRSEPPHEGARYTQIAVLEDGVLVEHFVTSAASASLVGN 410 Query 378 IYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGADRKIEQALKPGDYVVVQ 437 IYLG+VQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGG++RKIEQALK GDYV+VQ Sbjct 411 IYLGVVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGSNRKIEQALKSGDYVLVQ 470 Query 438 VSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTERQRLKEILREVVPSDAG 497 VSKDPVGHKGARLTTQ+SLAGR+LVYVPGASSTGISRKLPDTERQRLKEILR++VP+DAG Sbjct 471 VSKDPVGHKGARLTTQISLAGRYLVYVPGASSTGISRKLPDTERQRLKEILRDIVPADAG 530 Query 498 VIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGAAVALYEEPDVLVKVIRD 557 VIIRTASEGV+E+DIRADV RL+E+W+ IE A + KA+GAAVALYEEPDVLVKV+RD Sbjct 531 VIIRTASEGVREEDIRADVQRLQEQWQGIEQSATDLTSKASGAAVALYEEPDVLVKVVRD 590 Query 558 LFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADGPDGQSAPDVFTVHRIDE 617 LFNEDF LI+ GD AW+TI++YV +VAP+L+S++ +YES +G PDVF VHRIDE Sbjct 591 LFNEDFSKLIIEGDAAWDTIDDYVKTVAPDLLSRIERYESGEG------PDVFAVHRIDE 644 Query 618 QLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVR 677 QLAKA+DRKVWLPSGGTLVIDRTEAMTV+DVNTGKFTGAGGNLE+TVT+NNLEAAEEIVR Sbjct 645 QLAKALDRKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGAGGNLEETVTRNNLEAAEEIVR 704 Query 678 QLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQVSEVTSLGLVQLTRKRL 737 QLRLRD+GGIVVIDFIDMVLESNRDLVLRRLTE+L RDRTRHQVSEVTSLGLVQLTRK+L Sbjct 705 QLRLRDVGGIVVIDFIDMVLESNRDLVLRRLTEALGRDRTRHQVSEVTSLGLVQLTRKKL 764 Query 738 GTGLIEAFSTSCPNCSGRGILLHADPVD---SAAATGRKSEPGARRGKRSKKSRSEESSD 794 GTGLIEAFS++C +C+GRGI+LH DPVD +A++ +K+E G RR KRS+K + +D Sbjct 765 GTGLIEAFSSTCTHCAGRGIVLHVDPVDNASNASSPAKKAETG-RRAKRSRKGK----TD 819 Query 795 RSMVAKVPVHAPGEHPMFKAMAAG 818 +VA+ P H GEHPMFKAMAA Sbjct 820 DVVVARTPSHPQGEHPMFKAMAAA 843 >gi|296139195|ref|YP_003646438.1| Rne/Rng family ribonuclease [Tsukamurella paurometabola DSM 20162] gi|296027329|gb|ADG78099.1| ribonuclease, Rne/Rng family [Tsukamurella paurometabola DSM 20162] Length=1040 Score = 775 bits (2000), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/576 (69%), Positives = 462/576 (81%), Gaps = 43/576 (7%) Query 258 PPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKRQRRRDGRDAGRRRPPVL 317 PPNTVVHER PR + E++GI GSTRLEAKRQRRRDGRD RRRPP+L Sbjct 308 PPNTVVHEREPRQKSR----------RDEVRGISGSTRLEAKRQRRRDGRDTVRRRPPIL 357 Query 318 SEAEFLARREAVERVMVVRDRVRTEP---------PLPGTRYTQIAVLEDGIVVEHFVTS 368 +E+EFLARREAV+RVMVVR+R + P P P YTQ+AVLEDG++VEHFVTS Sbjct 358 TESEFLARREAVDRVMVVRERTKVGPSEGQDGHTVPHP-QDYTQVAVLEDGVLVEHFVTS 416 Query 369 AASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGADRKIEQAL 428 ++SAS+VGNIYLG VQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGL G RKIEQAL Sbjct 417 SSSASMVGNIYLGRVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLDGNARKIEQAL 476 Query 429 KPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTERQRLKEIL 488 KPGD V+VQVSKDPVGHKGARLTTQ+SLAGRFLVYVPG S GISRKLPDTER+RLKEIL Sbjct 477 KPGDQVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPGGGSAGISRKLPDTERKRLKEIL 536 Query 489 REVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGAAVALYEEP 548 +E+VP+DAGVIIRTASEGV +++ DV+RL+ +W +IE + KA G ALYEEP Sbjct 537 KEIVPADAGVIIRTASEGVSAEELAGDVSRLQAQWAEIEEAS-----KAKGVR-ALYEEP 590 Query 549 DVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADGPDGQSAPD 608 D+LVKV+RDLFNEDF L++ G AW T+ +YV++VAP+L+ ++ ++E APD Sbjct 591 DLLVKVVRDLFNEDFSKLVIEGGTAWGTVEKYVSTVAPDLMPRVERFEKRHA----DAPD 646 Query 609 VFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNLEQTVTKNN 668 VF +RIDEQLAKA+DRKVWLPSGGTLVIDRTEAMTV+DVNTGKFTG+GGNLE+TVT+NN Sbjct 647 VFAAYRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGSGGNLEETVTRNN 706 Query 669 LEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQVSEVTSLG 728 LEAAEEIVRQ+RLRDIGG++V+DFIDMVLESNRDLVLRRLTE+L RDRTRHQVSEVTSLG Sbjct 707 LEAAEEIVRQMRLRDIGGMIVVDFIDMVLESNRDLVLRRLTEALGRDRTRHQVSEVTSLG 766 Query 729 LVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRKSEPGARRGKRSKKSR 788 LVQ+TRKR+GTGL+EAFST C CSGRGI++HADPV++A + R G++S+ SR Sbjct 767 LVQMTRKRIGTGLVEAFSTPCQACSGRGIIIHADPVETAGG-----DDSGRSGEKSEGSR 821 Query 789 SEESSDRSMVAKVPVHAP--------GEHPMFKAMA 816 + +S A+ PV AP EHPMFKAMA Sbjct 822 KKRKRSKSDGAQQPVVAPKDDKAAHKSEHPMFKAMA 857 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/88 (47%), Positives = 51/88 (58%), Gaps = 6/88 (6%) Query 8 SDPPEPSQH-----EELPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDRVDA 62 +D P P + EE P +LRVH+LAR LG TS+ VL L L RSAHS++DR A Sbjct 2 ADTPSPEEQNNEAREEFPQKLRVHALARLLGLTSKEVLAHLGDLGFVARSAHSSIDRSAA 61 Query 63 VRVRDLLATHLETAGVLAASVHAPEASE 90 RVRD +A L A AA+ AP +E Sbjct 62 ERVRDRIA-ELAAAPDGAATPEAPAETE 88 >gi|262201995|ref|YP_003273203.1| ribonuclease, Rne/Rng family [Gordonia bronchialis DSM 43247] gi|262085342|gb|ACY21310.1| ribonuclease, Rne/Rng family [Gordonia bronchialis DSM 43247] Length=1123 Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/637 (66%), Positives = 495/637 (78%), Gaps = 43/637 (6%) Query 199 AETDDG--DDRDSEDTEAGDNGEDENGSLEA---GNRRRRRRRRRKSASGDDNDAALEGP 253 AE DD DD D+EDT D+ ED + + G+ RRRRRRRR+ D DA+ Sbjct 358 AEEDDAGTDDSDAEDTGESDDAEDSDAEADGNGEGSTRRRRRRRRRKGGADAEDAS---- 413 Query 254 LPDDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKRQRRRDGRDAGRRR 313 PDDPPNTVVHER PR+ +D E++GI GSTRLEAKRQRRRDGRDAGRRR Sbjct 414 -PDDPPNTVVHEREPRSK----RVRD------EVQGISGSTRLEAKRQRRRDGRDAGRRR 462 Query 314 PPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTR------------YTQIAVLEDGIV 361 PP+L+E+EFLARREAV+RVMVVR+R PGT YTQ+AVLEDG++ Sbjct 463 PPILTESEFLARREAVDRVMVVRERGANSRIAPGTGDDGHEHATPIEDYTQVAVLEDGVL 522 Query 362 VEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGAD 421 VEHFVT+A S+S+VGNIYLG VQNVLP MEAAFVDIGRGRNGVLYAGEVNWDAAGL G Sbjct 523 VEHFVTTATSSSMVGNIYLGRVQNVLPGMEAAFVDIGRGRNGVLYAGEVNWDAAGLDGGS 582 Query 422 RKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTER 481 RKIEQALKPGD V+VQVSKDPVGHKGARLTTQ+SLAGR+LVYVPG SSTGISRKLPD ER Sbjct 583 RKIEQALKPGDNVLVQVSKDPVGHKGARLTTQISLAGRYLVYVPGGSSTGISRKLPDVER 642 Query 482 QRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQI-EAKAQETKEKAAGA 540 +RLK+IL ++VP+DAGVIIRTASEGV +++ AD+ARL +W I E+ Q K + Sbjct 643 KRLKQILAKLVPADAGVIIRTASEGVSAEELGADIARLEAKWRSIDESVTQAKKNSGSAG 702 Query 541 AVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADG 600 ALYEEPD+LV+V+RDLFNEDF L+V G +AWN + YV SVAP+L+ ++ K+E Sbjct 703 PKALYEEPDLLVRVVRDLFNEDFKKLVVEGAKAWNLVEGYVGSVAPDLMDRVEKFEKPHA 762 Query 601 PDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNL 660 APD F VHRIDEQLAKA+DRKVWLPSGGTL+I+ TEAMTV+DVNTGKFTG+GGNL Sbjct 763 ----DAPDSFVVHRIDEQLAKALDRKVWLPSGGTLIIEHTEAMTVVDVNTGKFTGSGGNL 818 Query 661 EQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQ 720 E+TVT+NNLEAAEEIVRQ+RLRDIGG++++DFIDMVLESNRDLVLRRLTE+LARDRTRHQ Sbjct 819 EETVTRNNLEAAEEIVRQMRLRDIGGMIIVDFIDMVLESNRDLVLRRLTEALARDRTRHQ 878 Query 721 VSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRKSEPGARR 780 VSEVTSLGLVQ+TRKRLGTGL+EAFST+C C GRG+++HA+PV+ + + E G++R Sbjct 879 VSEVTSLGLVQMTRKRLGTGLLEAFSTTCTTCGGRGVIVHANPVEVRSEEAGRVEGGSKR 938 Query 781 GKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAA 817 +R K+ + E + + P H P EHPMF+AMAA Sbjct 939 SRRGKR-KPEAAPEHK-----PAHHPAEHPMFRAMAA 969 >gi|333918793|ref|YP_004492374.1| putative ribonuclease E/ G [Amycolicicoccus subflavus DQS3-9A1] gi|333481014|gb|AEF39574.1| putative ribonuclease E/ G [Amycolicicoccus subflavus DQS3-9A1] Length=1070 Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/583 (68%), Positives = 457/583 (79%), Gaps = 31/583 (5%) Query 241 ASGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKR 300 A G+D D + DDPPNTV+HER PR S E++GI GSTRLEAKR Sbjct 348 AGGEDGDGSDAASSDDDPPNTVIHEREPR----------NKSRKDEVQGISGSTRLEAKR 397 Query 301 QRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGI 360 QRR+DGRDA RRRPP+L+EAEFLARRE+V+RVMVVR++ PGT TQIAVLED + Sbjct 398 QRRKDGRDAVRRRPPILTEAEFLARRESVDRVMVVREKQADS--QPGT-TTQIAVLEDSM 454 Query 361 VVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGA 420 +VEHFVTSA+S S+VGNIYLG VQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGG Sbjct 455 LVEHFVTSASSGSIVGNIYLGRVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGN 514 Query 421 DRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTE 480 RKIEQALKPGD V+VQVSKDPVGHKGARLTTQ+SLAGRFLVYVP SSTGISRKLPD E Sbjct 515 SRKIEQALKPGDQVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPEGSSTGISRKLPDNE 574 Query 481 RQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGA 540 R+RLK+ILRE+VP+DAGVIIRTASEGV +++ D+ RLR W I+ +A+ K A Sbjct 575 RKRLKDILREIVPADAGVIIRTASEGVSAEELGRDIERLRTLWSSIDEQAKSEK---GNA 631 Query 541 AVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADG 600 +LYEEPD+LVKV+RDLFNEDF L+V GD WNT+ YV VAP+L+ ++ Y Sbjct 632 PKSLYEEPDLLVKVVRDLFNEDFSRLVVQGDRVWNTVEGYVRKVAPDLLDRVEHY----- 686 Query 601 PDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNL 660 Q+ D F RIDEQ+ KA+DRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTG+GGNL Sbjct 687 ---QADQDAFGAFRIDEQITKALDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGSGGNL 743 Query 661 EQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQ 720 E+TVT+NN+EAAEEIVRQLRLRDIGG++VIDFIDMVLESNRDLVLRRLTE+L+RDRTRHQ Sbjct 744 EETVTRNNIEAAEEIVRQLRLRDIGGMIVIDFIDMVLESNRDLVLRRLTEALSRDRTRHQ 803 Query 721 VSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDS-AAATGRKSEPGAR 779 VSEVTSLGLVQ+TRK++GTGL+EA+ST C +C GRGIL+H +PVD+ GR P + Sbjct 804 VSEVTSLGLVQMTRKKIGTGLVEAYSTPCEHCHGRGILVHEEPVDAQVTGDGRGGLPSSG 863 Query 780 RGKRSKKSRSE----ESSDRSMVAKVPVHAPGEHPMFKAMAAG 818 R R K+R E ++ + A+ VH+ +HPM AMA G Sbjct 864 RRSRRAKARQEVVQPQAKPDDLKAQAQVHS--KHPMILAMAGG 904 Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust. Identities = 23/51 (46%), Positives = 33/51 (65%), Gaps = 0/51 (0%) Query 19 LPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDRVDAVRVRDLL 69 P ++RVH+LA+ LG TS+++L L +RSAHSTV+R A V D + Sbjct 33 FPAKMRVHALAKLLGQTSKQLLSTLKERGLELRSAHSTVERQVAEEVWDAV 83 >gi|325677079|ref|ZP_08156748.1| rne/Rng family ribonuclease [Rhodococcus equi ATCC 33707] gi|325552064|gb|EGD21757.1| rne/Rng family ribonuclease [Rhodococcus equi ATCC 33707] Length=1078 Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/594 (66%), Positives = 471/594 (80%), Gaps = 33/594 (5%) Query 191 QQFTSADAAETDDGDDRDSEDTEAGDNGEDENGSLEAGNRRRRRRRRRKSASGDDNDAAL 250 +Q + +TD ++ SE E+ D+ + EAG R S S D+ D + Sbjct 270 EQHAEGETEDTDKTEETASEAAESTGKSADDTAA-EAGTESAEASEREASESDDEGDGSS 328 Query 251 ---------------EGPLPDDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTR 295 E DDPPNTVVHER PR + + E++GI GSTR Sbjct 329 RRRRRRRRRRGGADGEVASEDDPPNTVVHEREPRNKPRTKD---------EVQGISGSTR 379 Query 296 LEAKRQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAV 355 LEAKRQRRRDGRDAGRRRPP+LSE+EFLARREAV+RVMVVR++V P TQ+AV Sbjct 380 LEAKRQRRRDGRDAGRRRPPILSESEFLARREAVDRVMVVREKVGGANP---AASTQVAV 436 Query 356 LEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAA 415 LEDG++VEHFVT ++S S+VGN+YLG VQNVLPSMEAAF+DIGRGRNGVLYAGEVNW+AA Sbjct 437 LEDGVLVEHFVTGSSSTSMVGNVYLGRVQNVLPSMEAAFIDIGRGRNGVLYAGEVNWEAA 496 Query 416 GLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRK 475 GLGG +RKIEQALKPGD V+VQVSKDPVGHKGARLTTQ+SLAGRFLVYVPG +STGISRK Sbjct 497 GLGGRERKIEQALKPGDQVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPGGTSTGISRK 556 Query 476 LPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKE 535 LPDTER+RLKEILRE+VP+DAGVIIRTASEGV E+++ DV RL+ +W IE +A + K+ Sbjct 557 LPDTERKRLKEILREIVPADAGVIIRTASEGVSEEELSRDVTRLQTQWATIEEQAAKAKD 616 Query 536 KAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKY 595 +G+ ALYEEPD+LVKV+RDLFNEDF L++ G++AWNT+ Y+ +VAP+L+ ++ ++ Sbjct 617 GKSGSPQALYEEPDLLVKVVRDLFNEDFSKLVIEGEKAWNTVETYIKTVAPDLLPRVERH 676 Query 596 ESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTG 655 + A G PDVF HRIDEQLAKA+DRKVWLPSGGTLVIDRTEAMTV+DVNTGKFTG Sbjct 677 DPAPG-----TPDVFETHRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVVDVNTGKFTG 731 Query 656 AGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARD 715 AGGNLE+TVT+NNLEAAEEIVRQ+RLRDIGG++VIDFIDMVLESNRDLVLRRLTESL RD Sbjct 732 AGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVIDFIDMVLESNRDLVLRRLTESLGRD 791 Query 716 RTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAA 769 RTRHQVSEVTSLGLVQ+TRK+LGTGL+EAFST+C +C GRGI++H +PV++ ++ Sbjct 792 RTRHQVSEVTSLGLVQVTRKKLGTGLVEAFSTTCEHCHGRGIIVHTEPVETKSS 845 Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust. Identities = 21/48 (44%), Positives = 32/48 (67%), Gaps = 0/48 (0%) Query 19 LPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDRVDAVRVR 66 LP+++R H+LA+ LG TS++VL AL +RSA S++ R A R+ Sbjct 18 LPEKIRAHALAKLLGVTSKQVLAEAAALGTELRSAQSSLTREIAERIH 65 >gi|312140345|ref|YP_004007681.1| ribonuclease e and g [Rhodococcus equi 103S] gi|311889684|emb|CBH49001.1| putative ribonuclease E and G [Rhodococcus equi 103S] Length=1157 Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/527 (72%), Positives = 450/527 (86%), Gaps = 21/527 (3%) Query 243 GDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKRQR 302 G D + A E DDPPNTVVHER PR + + E++GI GSTRLEAKRQR Sbjct 419 GADGEVASE----DDPPNTVVHEREPRNKPRTKD---------EVQGISGSTRLEAKRQR 465 Query 303 RRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGIVV 362 RRDGRDAGRRRPP+LSE+EFLARREAV+RVMVVR++V P TQ+AVLEDG++V Sbjct 466 RRDGRDAGRRRPPILSESEFLARREAVDRVMVVREKVGGANP---AASTQVAVLEDGVLV 522 Query 363 EHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGADR 422 EHFVT ++S S+VGN+YLG VQNVLPSMEAAF+DIGRGRNGVLYAGEVNW+AAGLGG +R Sbjct 523 EHFVTGSSSTSMVGNVYLGRVQNVLPSMEAAFIDIGRGRNGVLYAGEVNWEAAGLGGRER 582 Query 423 KIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTERQ 482 KIEQALKPGD V+VQVSKDPVGHKGARLTTQ+SLAGRFLVYVPG +STGISRKLPDTER+ Sbjct 583 KIEQALKPGDQVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPGGTSTGISRKLPDTERK 642 Query 483 RLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGAAV 542 RLKEILRE+VP+DAGVIIRTASEGV E+++ DV RL+ +W IE +A + K+ +G+ Sbjct 643 RLKEILREIVPADAGVIIRTASEGVSEEELSRDVTRLQTQWATIEEQAAKAKDGKSGSPQ 702 Query 543 ALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADGPD 602 ALYEEPD+LVKV+RDLFNEDF L++ G++AWNT+ Y+ +VAP+L+ ++ +++ A G Sbjct 703 ALYEEPDLLVKVVRDLFNEDFSKLVIEGEKAWNTVETYIKTVAPDLLPRVERHDPAPG-- 760 Query 603 GQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNLEQ 662 PDVF HRIDEQLAKA+DRKVWLPSGGTLVIDRTEAMTV+DVNTGKFTGAGGNLE+ Sbjct 761 ---TPDVFETHRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGAGGNLEE 817 Query 663 TVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQVS 722 TVT+NNLEAAEEIVRQ+RLRDIGG++VIDFIDMVLESNRDLVLRRLTESL RDRTRHQVS Sbjct 818 TVTRNNLEAAEEIVRQMRLRDIGGMIVIDFIDMVLESNRDLVLRRLTESLGRDRTRHQVS 877 Query 723 EVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAA 769 EVTSLGLVQ+TRK+LGTGL+EAFST+C +C GRGI++H +PV++ ++ Sbjct 878 EVTSLGLVQVTRKKLGTGLVEAFSTTCEHCHGRGIIVHTEPVETKSS 924 Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust. Identities = 28/74 (38%), Positives = 40/74 (55%), Gaps = 8/74 (10%) Query 1 VIDGAPPSDPPEP--------SQHEELPDRLRVHSLARTLGTTSRRVLDALTALDGRVRS 52 V D APP + EP LP+++R H+LA+ LG TS++VL AL +RS Sbjct 65 VADQAPPENVQEPIVEASVQAGATPALPEKIRAHALAKLLGVTSKQVLAEAAALGTELRS 124 Query 53 AHSTVDRVDAVRVR 66 A S++ R A R+ Sbjct 125 AQSSLTREIAERIH 138 >gi|111018324|ref|YP_701296.1| ribonuclease E/ G [Rhodococcus jostii RHA1] gi|110817854|gb|ABG93138.1| probable ribonuclease E/ G [Rhodococcus jostii RHA1] Length=1134 Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/510 (74%), Positives = 445/510 (88%), Gaps = 18/510 (3%) Query 256 DDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKRQRRRDGRDAGRRRPP 315 DDPPNTVVHER PR ++ + E++GI GSTRLEAKRQRRRDGRDAGRRRPP Sbjct 368 DDPPNTVVHEREPRNKSRSKD---------EVQGITGSTRLEAKRQRRRDGRDAGRRRPP 418 Query 316 VLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGIVVEHFVTSAASASLV 375 +L+E+EFLARREAV+RVMVVRDR+ T P TQ+AVLEDG++VEHFVT++ASAS+V Sbjct 419 ILTESEFLARREAVDRVMVVRDRIATGQP---HATTQVAVLEDGVLVEHFVTTSASASMV 475 Query 376 GNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGADRKIEQALKPGDYVV 435 GN+YLG VQNVLPSMEAAF+DIGRGRNGVLYAGEVNW+AAGLGG RKIEQALKPGD V+ Sbjct 476 GNVYLGRVQNVLPSMEAAFIDIGRGRNGVLYAGEVNWEAAGLGGNSRKIEQALKPGDQVL 535 Query 436 VQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTERQRLKEILREVVPSD 495 VQVSKDPVGHKGARLTTQ+SLAGRFLVYVPG +STGISRKLPDTER+RLK+ILR++VPSD Sbjct 536 VQVSKDPVGHKGARLTTQISLAGRFLVYVPGGTSTGISRKLPDTERKRLKDILRDIVPSD 595 Query 496 AGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGAAVALYEEPDVLVKVI 555 AGVIIRTASEGV E+++ DV RL+++W IEA+A + + +G ALYEEPD+LVKVI Sbjct 596 AGVIIRTASEGVSEEELARDVKRLQDQWAGIEAQAAKAESGKSGNPQALYEEPDLLVKVI 655 Query 556 RDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADGPDGQSAPDVFTVHRI 615 RDLFNEDF L++ GD+AW+T+ Y+ SVAP+L+ +L ++ S +G DVF HRI Sbjct 656 RDLFNEDFSKLVIEGDKAWSTVESYIRSVAPDLMPRLEQHTSDNG------VDVFEAHRI 709 Query 616 DEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNLEQTVTKNNLEAAEEI 675 DEQLAKA+DRKVWLPSGGTLVIDRTEAMTV+DVNTGKFTGAGGNLE+TVT+NNLEAAEEI Sbjct 710 DEQLAKALDRKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGAGGNLEETVTRNNLEAAEEI 769 Query 676 VRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQVSEVTSLGLVQLTRK 735 VRQ+RLRDIGG++V+DFIDMVLESNRDLVLRRLTE+L RDRTRHQVSEVTSLGLVQ+TRK Sbjct 770 VRQMRLRDIGGMIVVDFIDMVLESNRDLVLRRLTEALGRDRTRHQVSEVTSLGLVQMTRK 829 Query 736 RLGTGLIEAFSTSCPNCSGRGILLHADPVD 765 +LGTGL+EAFST+C +C GRGI++HA+P++ Sbjct 830 KLGTGLVEAFSTTCEHCHGRGIVVHAEPIE 859 Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/48 (48%), Positives = 33/48 (69%), Gaps = 0/48 (0%) Query 19 LPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDRVDAVRVR 66 LP+++RVH+LA+ LG TS++VL AL +RSA S++ R A RV Sbjct 25 LPEKIRVHALAKLLGVTSKQVLAEAAALGTELRSAQSSLQRDVAERVH 72 >gi|229493246|ref|ZP_04387038.1| possible ribonuclease E Rne [Rhodococcus erythropolis SK121] gi|229319977|gb|EEN85806.1| possible ribonuclease E Rne [Rhodococcus erythropolis SK121] Length=1081 Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/649 (64%), Positives = 496/649 (77%), Gaps = 34/649 (5%) Query 183 DQQSEPRAQQFTSADAAETDDGDDRDSEDTEAGDNGEDENGSLEAGNRRRRRRRRRKSAS 242 +Q+S P A + + DAA + GD SE T D+ ++ L+A RRRRRRR+ + Sbjct 297 EQESAPAAVEKQTDDAAGEESGDK--SESTADADSENADDSDLDADGSSRRRRRRRRRKT 354 Query 243 GDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKRQR 302 G D DDPPNTVVHER PR + + E++GI GSTRLEAKRQR Sbjct 355 GTDGATDATATSEDDPPNTVVHEREPRNKTRVKD---------EVQGISGSTRLEAKRQR 405 Query 303 RRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGIVV 362 RRDGRDAGRRRPP+L+E+EFLARREAV+RVMVVRDR + P TQ+AVLEDG++V Sbjct 406 RRDGRDAGRRRPPILTESEFLARREAVDRVMVVRDRADSGQP---HATTQVAVLEDGVLV 462 Query 363 EHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGADR 422 EHFVT++ASAS+VGN+YLG VQNVLPSMEAAF+DIGRGRNGVLYAGEVNW+AAGLGG R Sbjct 463 EHFVTNSASASMVGNVYLGRVQNVLPSMEAAFIDIGRGRNGVLYAGEVNWEAAGLGGNSR 522 Query 423 KIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTERQ 482 KIEQALKPGD V+VQVSKDPVGHKGARLTTQ+SLAGRFLVYVPG +STGISRKLPDTER+ Sbjct 523 KIEQALKPGDQVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPGGTSTGISRKLPDTERK 582 Query 483 RLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGAAV 542 RLKEILR++VP+DAGVIIRTASEGV E+++ DV RL+ +W IE +A +G Sbjct 583 RLKEILRDIVPADAGVIIRTASEGVSEEELARDVTRLQAQWAGIEEQAAAADTGKSGNPQ 642 Query 543 ALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADGPD 602 ALYEEPD+LVKVIRDLFNEDF L++ G++A T+ Y+NSVAP+L+ +L KY +G Sbjct 643 ALYEEPDMLVKVIRDLFNEDFSKLVIEGEKAHTTVENYINSVAPDLLPRLEKYTPNNG-- 700 Query 603 GQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNLEQ 662 DVF RIDEQLAKA+DRKVWLPSGGTLVIDRTEAMTV+DVNTGKFTGAGGNLE+ Sbjct 701 ----IDVFAARRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGAGGNLEE 756 Query 663 TVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQVS 722 TVT+NNLEAAEEIVRQ+RLRDIGG++V+DFIDMVLESNRDLVLRRLTE L RDRTRHQVS Sbjct 757 TVTRNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLESNRDLVLRRLTECLGRDRTRHQVS 816 Query 723 EVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVD--------SAAATGRKS 774 EVTSLGLVQ+TRK+LGTGL+EAFST+C +C GRGI++H++PV+ S + + R Sbjct 817 EVTSLGLVQMTRKKLGTGLVEAFSTTCEHCHGRGIIVHSEPVEVKSSDDGGSRSGSQRSD 876 Query 775 EPGARRGKRSK--KSRSEESSDRSM----VAKVPVHAPGEHPMFKAMAA 817 +R+ KR + KS S ES+ + V V HP+ AMA+ Sbjct 877 SGTSRKNKRGRGDKSASTESNGQEAPAPEVPAVDATVKRAHPVALAMAS 925 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/57 (44%), Positives = 36/57 (64%), Gaps = 0/57 (0%) Query 18 ELPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDRVDAVRVRDLLATHLE 74 E PD++RVH+LA+ LG TS++VL AL +RSA S++ R A R+ L + E Sbjct 16 EFPDKMRVHALAKLLGVTSKQVLAEAAALGTELRSAQSSLHRDVAQRIHASLTSAAE 72 >gi|54023319|ref|YP_117561.1| hypothetical protein nfa13520 [Nocardia farcinica IFM 10152] gi|54014827|dbj|BAD56197.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=1145 Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/528 (72%), Positives = 436/528 (83%), Gaps = 24/528 (4%) Query 243 GDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKRQR 302 G D D A P DDPPNTVVHER PR N G + E++GI GSTRLEAKRQR Sbjct 315 GGDGDEAQ--PADDDPPNTVVHEREPR------NKARGRASVDEVQGITGSTRLEAKRQR 366 Query 303 RRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGIVV 362 RRDGR+AGRRRPP+L+E+EFLARREAV+RVMVVR++ + P TQ+AVLED I+V Sbjct 367 RRDGREAGRRRPPILTESEFLARREAVDRVMVVREKNFPDHP----NITQVAVLEDNILV 422 Query 363 EHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGADR 422 EHFVT S+VGN+YLG VQNVLPSMEAAFVDIGRGRNGVLYAGEVNW+AAGLGG +R Sbjct 423 EHFVTDTGQPSMVGNVYLGKVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAAGLGGKER 482 Query 423 KIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTERQ 482 KIEQALKPGD V+VQVSKDPVGHKGARLTTQ+SLAGRFLVYVPG +STGISRKLPDTER+ Sbjct 483 KIEQALKPGDQVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPGGTSTGISRKLPDTERK 542 Query 483 RLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGAAV 542 RLKEILRE+VP DAGVIIRTASEGV E ++ DV RL+ W I QE +K GA Sbjct 543 RLKEILREIVPPDAGVIIRTASEGVSEAELARDVERLQSTWRSI----QEQADKDGGAPK 598 Query 543 ALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADGPD 602 LYEEPD+LVKVIRDLFNEDF L++ G+ AW T+ Y+ +VAP+L+++++++E+ Sbjct 599 TLYEEPDLLVKVIRDLFNEDFSQLVIEGERAWTTVQNYIRTVAPDLLARVSRHEN----- 653 Query 603 GQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGG-NLE 661 + DVF +RIDEQLAKA+DRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTG+GG NLE Sbjct 654 --NGVDVFETYRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGSGGSNLE 711 Query 662 QTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQV 721 +TVT+NNLEAAEEIVRQ+RLRDIGG++V+DFIDMVLESNRDLVLRRLTE+L RDRTRHQV Sbjct 712 ETVTRNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLESNRDLVLRRLTEALGRDRTRHQV 771 Query 722 SEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAA 769 SEVTSLGLVQ+TRK+LGTGL+EAFST+C +C GRGI++H PV+ A Sbjct 772 SEVTSLGLVQMTRKKLGTGLVEAFSTTCEHCHGRGIIVHNYPVEPGQA 819 Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 29/54 (54%), Positives = 38/54 (71%), Gaps = 0/54 (0%) Query 17 EELPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDRVDAVRVRDLLA 70 ++LP+R+RVH+LA+ LG TS+R+L L+ L RSA S VDR A VRD LA Sbjct 15 DQLPERIRVHALAKRLGVTSKRILAKLSELGSEARSAQSNVDRAVAETVRDALA 68 >gi|319949123|ref|ZP_08023215.1| ribonuclease, Rne/Rng family [Dietzia cinnamea P4] gi|319437195|gb|EFV92223.1| ribonuclease, Rne/Rng family [Dietzia cinnamea P4] Length=1044 Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/524 (71%), Positives = 437/524 (84%), Gaps = 15/524 (2%) Query 256 DDPPNTVVHERVPRAGDKAGNSQDGGSGST-EIKGIDGSTRLEAKRQRRRDGRDAGRRRP 314 DDPP+T VHER PR + G + G S S+ E++GI GSTRLEAKRQRRRDGR+AGRRR Sbjct 417 DDPPHTEVHERDPR--RRTGRAGQGSSTSSDEVQGITGSTRLEAKRQRRRDGREAGRRRQ 474 Query 315 PVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGIVVEHFVTSAASASL 374 P+LSEAEFLARREAV+RVMVVR++ RT+ TQ+ VLED ++VEHFVT+ ++ S+ Sbjct 475 PILSEAEFLARREAVDRVMVVREKQRTDGK---GLMTQVGVLEDKVLVEHFVTTESARSM 531 Query 375 VGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGADRKIEQALKPGDYV 434 VGN+YLG VQNVLPSMEAAFVDIGRGRNGVLYAGEVNW+AAGLGG R+IEQALK GD V Sbjct 532 VGNVYLGRVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAAGLGGKARRIEQALKSGDMV 591 Query 435 VVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTERQRLKEILREVVPS 494 +VQV+KDPVG KGARL+TQ+SLAGRFLVYVP +STGISRKLPDTER+RLK IL+EVVP Sbjct 592 LVQVTKDPVGQKGARLSTQISLAGRFLVYVPDGNSTGISRKLPDTERRRLKGILKEVVPE 651 Query 495 DAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGAAVALYEEPDVLVKV 554 +GVIIRTA+EGV ++I DV RL +W +I A + E +G VALYEEPD+LVKV Sbjct 652 GSGVIIRTAAEGVSAEEIGRDVERLAAQWTEISEAAAKRTESGSGTPVALYEEPDLLVKV 711 Query 555 IRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADGPDGQSAPDVFTVHR 614 +RDLFNEDF L++ G+ +WNT++ YV+ VAPE+V +L ++ D PD DVF HR Sbjct 712 VRDLFNEDFSKLVIQGETSWNTVHGYVSRVAPEMVDRLERH---DNPD----VDVFATHR 764 Query 615 IDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNLEQTVTKNNLEAAEE 674 +DEQLAKA+DRKVWLPSGG+LVIDRTEAMTVIDVNTGK+TG+GGNLE+TVTKNNLEAAEE Sbjct 765 VDEQLAKALDRKVWLPSGGSLVIDRTEAMTVIDVNTGKYTGSGGNLEETVTKNNLEAAEE 824 Query 675 IVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQVSEVTSLGLVQLTR 734 IVRQLRLRD+GG+V+IDFIDMVLE+NRDLVLRRLTE+L RDRTRHQVSEVTSLGLVQLTR Sbjct 825 IVRQLRLRDVGGMVIIDFIDMVLEANRDLVLRRLTEALGRDRTRHQVSEVTSLGLVQLTR 884 Query 735 KRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRKSEPGA 778 K+LGTGL+EAFST C +C GRG+++HADP+ + + EPGA Sbjct 885 KKLGTGLVEAFSTPCEHCQGRGLIVHADPLHTESHNA--DEPGA 926 >gi|343925344|ref|ZP_08764869.1| putative ribonuclease [Gordonia alkanivorans NBRC 16433] gi|343764783|dbj|GAA11795.1| putative ribonuclease [Gordonia alkanivorans NBRC 16433] Length=1115 Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/664 (61%), Positives = 481/664 (73%), Gaps = 65/664 (9%) Query 204 GDDRDSEDTEAGDNGEDENGSLEAGNRRRRRRRRRKSASGDDNDAAL------------- 250 DD S++ + +GS + R+ S+ G+ D Sbjct 322 ADDSKSDEPTSRRRRRRRSGSDTSEEADRKDSASDDSSKGESKDDDSDDDSDDNDDESGD 381 Query 251 ------------------------EGPLPDDPPNTVVHERVPRAGDKAGNSQDGGSGSTE 286 EG PDDPPNTVVHER PR + ++D E Sbjct 382 DSGEASSTRRRRRRRRRKGGGEPDEGS-PDDPPNTVVHEREPR----SKRARD------E 430 Query 287 IKGIDGSTRLEAKRQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLP 346 ++GI GSTRLEAKRQRRRDGRDAGRRRPP+L+E+EFLARREAV+RVMVVR+R Sbjct 431 VQGISGSTRLEAKRQRRRDGRDAGRRRPPILTESEFLARREAVDRVMVVRERSANSSITD 490 Query 347 G--------TRYTQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIG 398 YTQ+AVLEDG++VEHFVT+A S+S+VGNIYLG VQNVLP MEAAFVDIG Sbjct 491 SDGHDHAAVEDYTQVAVLEDGVLVEHFVTTATSSSMVGNIYLGRVQNVLPGMEAAFVDIG 550 Query 399 RGRNGVLYAGEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAG 458 RGRNGVLYAGEVNWDAAGL G RKIEQALKPGD+V+VQVSKDPVGHKGARLTTQ+SLAG Sbjct 551 RGRNGVLYAGEVNWDAAGLDGGSRKIEQALKPGDHVLVQVSKDPVGHKGARLTTQISLAG 610 Query 459 RFLVYVPGASSTGISRKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVAR 518 R+LVYVPG SSTGISRKLPD ER+RLK+IL ++VP DAGVIIRTASEGV +++ AD+AR Sbjct 611 RYLVYVPGGSSTGISRKLPDVERKRLKQILSKLVPEDAGVIIRTASEGVSAEELGADIAR 670 Query 519 LRERWEQIEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTIN 578 L +W+ IE + K+ +GA ALYEEPD+LV+V+RDLFNEDF L+V GD+AWN + Sbjct 671 LEAKWKSIEESVESVKKSGSGAPKALYEEPDLLVRVVRDLFNEDFKKLVVEGDKAWNLVE 730 Query 579 EYVNSVAPELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVID 638 YV+SVAP+L+ ++ K+ APD F VHRIDEQLAKA+DRKVWLPSGGTL+I+ Sbjct 731 GYVSSVAPDLMERVEKFSKPHA----DAPDSFVVHRIDEQLAKALDRKVWLPSGGTLIIE 786 Query 639 RTEAMTVIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLE 698 TEAMTV+DVNTGKFTG+GGNLE+TVT+NNLEAAEEIVRQ+RLRDIGG++++DFIDMVLE Sbjct 787 HTEAMTVVDVNTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIIVDFIDMVLE 846 Query 699 SNRDLVLRRLTESLARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGIL 758 SNRDLVLRRLTE+LARDRTRHQVSEVTSLGLVQ+TRKRLGTGL+EAFST C +C GRG++ Sbjct 847 SNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQMTRKRLGTGLLEAFSTPCTSCGGRGLI 906 Query 759 LHADPV-----DSAAATGRKSEPGARRGKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFK 813 +HA+PV DSA + G S+ R K+S+ + + A P EHP+F+ Sbjct 907 VHANPVEVRGDDSAKSDGAGSKRSRRGKKKSEAPAEVAAPKAAPPAIPPHKPAAEHPLFR 966 Query 814 AMAA 817 AMAA Sbjct 967 AMAA 970 Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/57 (50%), Positives = 35/57 (62%), Gaps = 0/57 (0%) Query 3 DGAPPSDPPEPSQHEELPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDR 59 +G+P P EE P +LRVH+LAR LG TSR+VL L L + RS S+VDR Sbjct 4 NGSPADANAAPEPVEEFPSKLRVHALARFLGLTSRQVLAHLANLGVQTRSPQSSVDR 60 >gi|296394163|ref|YP_003659047.1| ribonuclease, Rne/Rng family [Segniliparus rotundus DSM 44985] gi|296181310|gb|ADG98216.1| ribonuclease, Rne/Rng family [Segniliparus rotundus DSM 44985] Length=827 Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/564 (67%), Positives = 456/564 (81%), Gaps = 18/564 (3%) Query 256 DDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKRQRRRDGRDAGRRRPP 315 DDPPNTVV ER R+ DK + E++GI GSTRLEAKRQRRR+GRD GRRR Sbjct 250 DDPPNTVVRERSGRSKDKDRD---------EVQGISGSTRLEAKRQRRREGRDWGRRRSV 300 Query 316 VLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGIVVEHFVTSAASASLV 375 +LSE+EFLARREAVERVMVVR+R PG +YTQI VLED I+VEHFVT++ASAS+V Sbjct 301 ILSESEFLARREAVERVMVVRERQVNPDGSPGGKYTQIGVLEDNILVEHFVTTSASASMV 360 Query 376 GNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGADRKIEQALKPGDYVV 435 GNIYLG VQNVLPSMEAAFVDIGRG N VLYAGEVNW+ GLGG RKIE A+KPGDY++ Sbjct 361 GNIYLGRVQNVLPSMEAAFVDIGRGNNAVLYAGEVNWEGVGLGGDARKIEHAIKPGDYLL 420 Query 436 VQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTERQRLKEILREVVPSD 495 VQV+KDPVGHKGARLTTQ++LAGR+LV+VPGAS+ GISRKLPDTER RL+EIL +VP D Sbjct 421 VQVNKDPVGHKGARLTTQIALAGRYLVFVPGASAKGISRKLPDTERNRLREILSGIVPED 480 Query 496 AGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGAAVALYEEPDVLVKVI 555 AGVI+RTASEGV + + DV RL E+W++I+ A+E K + G +LY EPD+LVK+I Sbjct 481 AGVIVRTASEGVSAEHLTEDVTRLAEQWQRIQQLAEEAKAQGGGPR-SLYREPDLLVKLI 539 Query 556 RDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADGPDGQSAPDVFTVHRI 615 RD+FNEDF L+V G+ + + EY++++APEL +L ++E A+ DGQ DVF+ +R+ Sbjct 540 RDVFNEDFARLVVQGEGPYEVVQEYLSAIAPELGERLERFEPAE--DGQ---DVFSAYRV 594 Query 616 DEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNLEQTVTKNNLEAAEEI 675 DEQLAKA+ RKVWLPSGGTLVIDRTEAMTV+DVNTGKF G+GGNLE+TVT+NNLEAAEEI Sbjct 595 DEQLAKALGRKVWLPSGGTLVIDRTEAMTVVDVNTGKFVGSGGNLEETVTRNNLEAAEEI 654 Query 676 VRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQVSEVTSLGLVQLTRK 735 VRQLRLRDIGGI+V+DFIDMVLESNR+LVLRRLTE LARDRTRHQVSEVTSLGLVQ+TRK Sbjct 655 VRQLRLRDIGGIIVVDFIDMVLESNRELVLRRLTECLARDRTRHQVSEVTSLGLVQMTRK 714 Query 736 RLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRKSEPGARRGKRSKKSRSEESSDR 795 R+GTGL+EAFS C +C GRG+++H+DP+ + + + G+ RG+RS+ S ++ + Sbjct 715 RIGTGLLEAFSNKCSHCEGRGVVVHSDPLGTELPDENRHDSGSGRGRRSRGGGSNNNAAQ 774 Query 796 SM--VAKVPVHAPGEHPMFKAMAA 817 S V KV H GEHPMF+AMAA Sbjct 775 SQVPVPKVLAHH-GEHPMFRAMAA 797 >gi|226360450|ref|YP_002778228.1| ribonuclease [Rhodococcus opacus B4] gi|226238935|dbj|BAH49283.1| putative ribonuclease [Rhodococcus opacus B4] Length=1110 Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/510 (74%), Positives = 445/510 (88%), Gaps = 18/510 (3%) Query 256 DDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKRQRRRDGRDAGRRRPP 315 DDPPNTVVHER PR ++ + E++GI GSTRLEAKRQRRRDGRDAGRRRPP Sbjct 360 DDPPNTVVHEREPRNKSRSKD---------EVQGITGSTRLEAKRQRRRDGRDAGRRRPP 410 Query 316 VLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGIVVEHFVTSAASASLV 375 +L+E+EFLARREAV+RVMVVRDRV + P TQ+AVLEDG++VEHFVT++ASAS+V Sbjct 411 ILTESEFLARREAVDRVMVVRDRVVSGQP---HATTQVAVLEDGVLVEHFVTTSASASMV 467 Query 376 GNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGADRKIEQALKPGDYVV 435 GN+YLG VQNVLPSMEAAF+DIGRGRNGVLYAGEVNW+AAGLGG RKIEQALKPGD V+ Sbjct 468 GNVYLGRVQNVLPSMEAAFIDIGRGRNGVLYAGEVNWEAAGLGGNSRKIEQALKPGDQVL 527 Query 436 VQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTERQRLKEILREVVPSD 495 VQVSKDPVGHKGARLTTQ+SLAGRFLVYVPG +STGISRKLPDTER+RLK+ILR++VPSD Sbjct 528 VQVSKDPVGHKGARLTTQISLAGRFLVYVPGGTSTGISRKLPDTERKRLKDILRDIVPSD 587 Query 496 AGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGAAVALYEEPDVLVKVI 555 AGVIIRTASEGV E+++ DV RL+E+W IEA+A + + +G ALYEEPD+LVKVI Sbjct 588 AGVIIRTASEGVSEEELARDVTRLQEQWAGIEAQAAKAESGKSGNPQALYEEPDLLVKVI 647 Query 556 RDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADGPDGQSAPDVFTVHRI 615 RDLFNEDF L++ G++AW+T+ Y+ SVAP+L+ +L ++ S +G DVF HRI Sbjct 648 RDLFNEDFSKLVIEGEKAWSTVESYIQSVAPDLMPRLKQHTSDNG------VDVFEAHRI 701 Query 616 DEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNLEQTVTKNNLEAAEEI 675 DEQLAKA+DRKVWLPSGGTLVIDRTEAMTV+DVNTGKFTGAGGNLE+TVT+NNLEAAEEI Sbjct 702 DEQLAKALDRKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGAGGNLEETVTRNNLEAAEEI 761 Query 676 VRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQVSEVTSLGLVQLTRK 735 VRQ+RLRDIGG++V+DFIDMVLESNRDLVLRRLTE+L RDRTRHQVSEVTSLGLVQ+TRK Sbjct 762 VRQMRLRDIGGMIVVDFIDMVLESNRDLVLRRLTEALGRDRTRHQVSEVTSLGLVQMTRK 821 Query 736 RLGTGLIEAFSTSCPNCSGRGILLHADPVD 765 +LGTGL+EAFST+C +C GRGI++HA+P++ Sbjct 822 KLGTGLVEAFSTTCEHCHGRGIIVHAEPIE 851 Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust. Identities = 22/47 (47%), Positives = 33/47 (71%), Gaps = 0/47 (0%) Query 19 LPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDRVDAVRV 65 LP+++RVH+LA+ LG TS++V+ AL +RSA S++ R A RV Sbjct 25 LPEKIRVHALAKLLGVTSKQVIAEAAALGLELRSAQSSLQRDIAERV 71 >gi|326382839|ref|ZP_08204529.1| ribonuclease, Rne/Rng family [Gordonia neofelifaecis NRRL B-59395] gi|326198429|gb|EGD55613.1| ribonuclease, Rne/Rng family [Gordonia neofelifaecis NRRL B-59395] Length=1039 Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/515 (72%), Positives = 432/515 (84%), Gaps = 21/515 (4%) Query 258 PPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKRQRRRDGRDAGRRRPPVL 317 PPNTVVHER PR +D E++GI GSTRLEAKRQRRRDGRDAGRRRPP+L Sbjct 353 PPNTVVHEREPRTK----KVRD------EVQGISGSTRLEAKRQRRRDGRDAGRRRPPIL 402 Query 318 SEAEFLARREAVERVMVVRDRVRTEPPL-------PGTRYTQIAVLEDGIVVEHFVTSAA 370 +E+EFLARRE+VERVMVVR+R + P YTQIAVLEDG++VEHFVT+ Sbjct 403 TESEFLARRESVERVMVVRERSANASVVDHDSHAAPTEDYTQIAVLEDGVLVEHFVTTET 462 Query 371 SASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGADRKIEQALKP 430 S S+VGNIYLG VQNVLP MEAAFVDIGRGRNGVLYAGEVNW+AAGL G RKIEQALKP Sbjct 463 SQSMVGNIYLGRVQNVLPGMEAAFVDIGRGRNGVLYAGEVNWEAAGLDGGSRKIEQALKP 522 Query 431 GDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTERQRLKEILRE 490 GDYV+VQVSKDP+GHKGARLTTQ+SLAGR+LVYVPG +STGISRKLPDTER+RLK+IL + Sbjct 523 GDYVLVQVSKDPIGHKGARLTTQISLAGRYLVYVPGGTSTGISRKLPDTERKRLKQILAK 582 Query 491 VVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGAAVALYEEPDV 550 +VP +AGVIIRTASEGV +++ AD+ RL +W+ IEA A + KA+G ALYEEPD+ Sbjct 583 LVPDEAGVIIRTASEGVSAEELGADIERLEAQWKSIEAAADGHRSKASGTPKALYEEPDL 642 Query 551 LVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADGPDGQSAPDVF 610 LV+V+RDLFNEDF L+V GD AW+ ++ YV VAP+L +L ++ + APD F Sbjct 643 LVRVVRDLFNEDFRKLVVEGDRAWSQVSGYVRDVAPDLSERLEEFTK----NHADAPDSF 698 Query 611 TVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNLEQTVTKNNLE 670 VHRIDEQLAKA+DRKVWLPSGGTL+I+ TEAMTV+DVNTGKFTG+GGNLE+TVT+NNLE Sbjct 699 AVHRIDEQLAKALDRKVWLPSGGTLIIEHTEAMTVVDVNTGKFTGSGGNLEETVTRNNLE 758 Query 671 AAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQVSEVTSLGLV 730 AAEEIVRQ+RLRDIGG++++DFIDMVLESNRDLVLRRLTE+LARDRTRHQVSEVTSLGLV Sbjct 759 AAEEIVRQMRLRDIGGMIIVDFIDMVLESNRDLVLRRLTEALARDRTRHQVSEVTSLGLV 818 Query 731 QLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVD 765 Q+TRKRLGTGL+EAFST+C CSGRG+++HA+PV+ Sbjct 819 QMTRKRLGTGLLEAFSTTCTACSGRGVIVHANPVE 853 Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/45 (52%), Positives = 30/45 (67%), Gaps = 0/45 (0%) Query 18 ELPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDRVDA 62 + P RLRVH+LARTLG TS+ VL L + R+A S++ R DA Sbjct 19 KFPLRLRVHALARTLGLTSKEVLAHLQEMGVTARTAQSSISRADA 63 >gi|257055293|ref|YP_003133125.1| ribonuclease, Rne/Rng family [Saccharomonospora viridis DSM 43017] gi|256585165|gb|ACU96298.1| ribonuclease, Rne/Rng family [Saccharomonospora viridis DSM 43017] Length=1093 Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/509 (69%), Positives = 415/509 (82%), Gaps = 24/509 (4%) Query 256 DDPPNTVVHERVPR-AGDKAGNSQDGGSGSTEIKGIDGSTRLEAKRQRRRDGRDAGRRRP 314 DDPPNTVVH R + A +K ++DG ++ + GSTRLEAKRQRRRDGR+AGRRR Sbjct 426 DDPPNTVVHVRDGKPAEEKETKAEDG------VRSVRGSTRLEAKRQRRRDGREAGRRRA 479 Query 315 PVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGIVVEHFVTSAASASL 374 P+LSEAEFLARRE+VER MVV +R + TQI VLEDG++VEHFVTS+ S S+ Sbjct 480 PILSEAEFLARRESVERTMVVAERGDS---------TQIGVLEDGVLVEHFVTSSDSGSI 530 Query 375 VGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGADRKIEQALKPGDYV 434 VGN+YLG VQNVLPSMEAAF+DIGRGRN VLYAGEV+WDAAGL G RKIEQAL GD+V Sbjct 531 VGNVYLGRVQNVLPSMEAAFIDIGRGRNAVLYAGEVDWDAAGLEGKARKIEQALTTGDHV 590 Query 435 VVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTERQRLKEILREVVPS 494 +VQV+KDPVGHKGARLTTQ+SL GRFLVYVP +TGISRKLP+ ER+RLK+IL+ +VPS Sbjct 591 LVQVTKDPVGHKGARLTTQISLPGRFLVYVPSGGATGISRKLPENERRRLKDILKRIVPS 650 Query 495 DAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGAAVALYEEPDVLVKV 554 DAGVIIRTASEG+ E+++ DV RL+ +WE I+ KA+ K +GA LY+EPD+LVKV Sbjct 651 DAGVIIRTASEGISEEELARDVRRLKAQWEVIKEKAEAASAKKSGAPALLYQEPDLLVKV 710 Query 555 IRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADGPDGQSAPDVFTVHR 614 IRDLF EDF L+V GD AW TI YV VAP+L+ ++ +Y DVF +R Sbjct 711 IRDLFTEDFKKLVVQGDTAWETIRNYVEHVAPDLLDRVERYVGTG--------DVFADYR 762 Query 615 IDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNLEQTVTKNNLEAAEE 674 IDEQL KA+DRKVWLPSGG LVIDRTEAMTVIDVNTGKFTG+GGNLE+TVT+NNLE+AEE Sbjct 763 IDEQLMKALDRKVWLPSGGYLVIDRTEAMTVIDVNTGKFTGSGGNLEETVTRNNLESAEE 822 Query 675 IVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQVSEVTSLGLVQLTR 734 IVRQLRLRDIGGI+VIDFIDMVLESNR+LVLRRLTE L+RDRTRHQV+EVTSLGLVQ+TR Sbjct 823 IVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLSRDRTRHQVAEVTSLGLVQMTR 882 Query 735 KRLGTGLIEAFSTSCPNCSGRGILLHADP 763 KR+GTGL+EAFST+C +C GRG+++ DP Sbjct 883 KRVGTGLLEAFSTTCEHCKGRGVIVSTDP 911 Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust. Identities = 27/52 (52%), Positives = 33/52 (64%), Gaps = 0/52 (0%) Query 18 ELPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDRVDAVRVRDLL 69 ELPD+ RVH LA+ LGT+SR VL AL L RS S V + A+RV + L Sbjct 25 ELPDKTRVHLLAKLLGTSSREVLAALAQLGHTARSPQSGVSKDVALRVAEEL 76 >gi|317507074|ref|ZP_07964836.1| rne/Rng family ribonuclease [Segniliparus rugosus ATCC BAA-974] gi|316254617|gb|EFV13925.1| rne/Rng family ribonuclease [Segniliparus rugosus ATCC BAA-974] Length=553 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/532 (67%), Positives = 438/532 (83%), Gaps = 9/532 (1%) Query 286 EIKGIDGSTRLEAKRQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPL 345 E++GI GSTRLEAKRQRRR+GRD GRRR +LSE+EFLARRE+VERVMVVR+R Sbjct 13 EVQGISGSTRLEAKRQRRREGRDWGRRRSVILSESEFLARRESVERVMVVRERDGNPDGS 72 Query 346 PGTRYTQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVL 405 PG +YTQI VLED ++VEHFVT++ASAS+VGNIYLG VQNVLPSMEAAFVDIGRG N VL Sbjct 73 PGGKYTQIGVLEDNVLVEHFVTTSASASMVGNIYLGRVQNVLPSMEAAFVDIGRGNNAVL 132 Query 406 YAGEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVP 465 YAGEVNW+ GLGG RKIE A+KPGDY++VQV+KDPVGHKGARLTTQ++LAGR+LV+VP Sbjct 133 YAGEVNWEGVGLGGDARKIEHAIKPGDYLLVQVNKDPVGHKGARLTTQIALAGRYLVFVP 192 Query 466 GASSTGISRKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQ 525 GAS+ GISRKLPDTER RL+EIL +VP DAGVI+RTASEGV + + DV RL E+W++ Sbjct 193 GASAKGISRKLPDTERNRLREILAGIVPEDAGVIVRTASEGVSAEQLTEDVTRLAEQWQR 252 Query 526 IEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVA 585 I+ A++ K + G +LY EPD+LVK+IRD+FNEDF L+V G+ + + EY++++A Sbjct 253 IQKAAEDAKGQGGGPR-SLYREPDLLVKLIRDVFNEDFAKLVVQGENSHEVVQEYLSAIA 311 Query 586 PELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTV 645 P+L +L ++E +GQ DVF+ +R+DEQLAKA+ RKVWLPSGGTLVIDRTEAMTV Sbjct 312 PDLGERLERFEPK--AEGQ---DVFSEYRVDEQLAKALGRKVWLPSGGTLVIDRTEAMTV 366 Query 646 IDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVL 705 +DVNTGKF G+GGNLE+TVT+NNLEAAEEIVRQLRLRDIGGI+V+DFIDMVLESNR+LVL Sbjct 367 VDVNTGKFVGSGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRELVL 426 Query 706 RRLTESLARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVD 765 RRLTE LARDRTRHQVSEVTSLGLVQ+TRKR+GTGL+EAFS+ C +C GRG+++H DP+ Sbjct 427 RRLTECLARDRTRHQVSEVTSLGLVQMTRKRIGTGLLEAFSSKCSHCEGRGVIVHPDPLG 486 Query 766 SAAATGRKSEPGARRGKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAA 817 + + E G+ RG+RS+ + + + +V KV H GEHPMF+AMAA Sbjct 487 TELPEEGRHESGSGRGRRSRGGNAAQQA--PVVPKVVAHH-GEHPMFRAMAA 535 >gi|256375324|ref|YP_003098984.1| ribonuclease, Rne/Rng family [Actinosynnema mirum DSM 43827] gi|255919627|gb|ACU35138.1| ribonuclease, Rne/Rng family [Actinosynnema mirum DSM 43827] Length=974 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/522 (71%), Positives = 422/522 (81%), Gaps = 25/522 (4%) Query 242 SGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKRQ 301 SG D++AA P DDPPNTVVH R R D + D + E++ + GSTRLEAKRQ Sbjct 229 SGADDEAA---PNEDDPPNTVVHVRETR--DARDDRADSEAAQNEVRSVRGSTRLEAKRQ 283 Query 302 RRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGIV 361 RRRDGR+AGRRR PVLSEAEFLARREAVER MVVR+R G R TQI VLEDG++ Sbjct 284 RRRDGREAGRRRAPVLSEAEFLARREAVERTMVVRER--------GDR-TQIGVLEDGVL 334 Query 362 VEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGAD 421 VEHFVTSA S SLVGN+YLG VQNVLPSMEAAF+DIGRGRN VLYAGEV+WDAAGL G Sbjct 335 VEHFVTSAGSGSLVGNVYLGRVQNVLPSMEAAFIDIGRGRNAVLYAGEVDWDAAGLEGKA 394 Query 422 RKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTER 481 RKIEQAL GD V+VQV+KDP+GHKGARLTTQ+SL GRFLVYVPG +TGISRKLPD ER Sbjct 395 RKIEQALSSGDSVLVQVTKDPIGHKGARLTTQISLPGRFLVYVPGGGATGISRKLPDNER 454 Query 482 QRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGAA 541 +RLK+IL+ VVP DAGVIIRTASEGV E+++ DV RL+ +W+ I+ KA K A A Sbjct 455 KRLKDILKRVVPDDAGVIIRTASEGVAEEELARDVTRLQAQWQIIKDKAATPK---AQAP 511 Query 542 VALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADGP 601 LYEEPD+LVKV+RDLF EDF GL+V G EAW+TI+ YV VAP+L +L ++ Sbjct 512 QLLYEEPDLLVKVVRDLFTEDFSGLVVQGSEAWDTIDGYVRHVAPDLQERLHRHV----- 566 Query 602 DGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNLE 661 G S D F +RIDEQL KA+DRKVWLPSGG LVIDRTEAMTVIDVNTGKFTG+GGNLE Sbjct 567 -GNS--DAFGEYRIDEQLMKALDRKVWLPSGGYLVIDRTEAMTVIDVNTGKFTGSGGNLE 623 Query 662 QTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQV 721 +TVT+NNLEAAEEIVRQLRLRD+GGI+VIDFIDMVLESNRDLVLRRLTE L RDRTRHQV Sbjct 624 ETVTRNNLEAAEEIVRQLRLRDVGGIIVIDFIDMVLESNRDLVLRRLTECLGRDRTRHQV 683 Query 722 SEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADP 763 +EVTSLGLVQ+TRKR+GTGL+EAFS++C +C GRG+++ DP Sbjct 684 AEVTSLGLVQMTRKRVGTGLLEAFSSTCEHCRGRGLVVTTDP 725 >gi|302528915|ref|ZP_07281257.1| predicted protein [Streptomyces sp. AA4] gi|302437810|gb|EFL09626.1| predicted protein [Streptomyces sp. AA4] Length=1054 Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/525 (67%), Positives = 417/525 (80%), Gaps = 24/525 (4%) Query 243 GDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKRQR 302 G ++DAA E DDPPNTV H R +A + ++D E++ + GSTRLEAKRQR Sbjct 374 GGEDDAA-ETTGSDDPPNTVTHVRQAKAAEAERPARD------EVRSVRGSTRLEAKRQR 426 Query 303 RRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGIVV 362 RRDGR+AGRRR P+LSEAEFLARRE+V+R MVV ++ + TQIAVLEDG++V Sbjct 427 RRDGREAGRRRAPILSEAEFLARRESVDRTMVVAEKGDS---------TQIAVLEDGVLV 477 Query 363 EHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGADR 422 EHFVTS+ + S+VGN+YLG VQNVLPSMEAAF+DIGRGRN VLYAGEV+WDAAGL G R Sbjct 478 EHFVTSSGTGSIVGNVYLGRVQNVLPSMEAAFIDIGRGRNAVLYAGEVDWDAAGLEGKAR 537 Query 423 KIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTERQ 482 KIEQAL GD V+VQV+KDPVGHKGARLTTQ+SL GRFLVYVP +TGISRKLP+ ER+ Sbjct 538 KIEQALSTGDSVLVQVTKDPVGHKGARLTTQISLPGRFLVYVPAGGATGISRKLPENERR 597 Query 483 RLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGAAV 542 RLK+IL+ +VP DAGVIIRTASEG+ E+++ DV RL+ +W+ I+ KA K GA Sbjct 598 RLKDILKRIVPEDAGVIIRTASEGISEEELDRDVQRLKAQWDVIKEKASAGSAKKGGAPT 657 Query 543 ALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADGPD 602 LYEEPD+LVKV+RDLF EDF L V G AW TI+ YV VAP+L +L +Y + +G Sbjct 658 MLYEEPDLLVKVVRDLFTEDFAKLEVQGSTAWETIHGYVQHVAPDLTDRLKRY-TGNG-- 714 Query 603 GQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNLEQ 662 D F HRIDEQ+ KA+DRKVWLPSGG LVIDRTEAMTVIDVNTGKFTG+GGNLE+ Sbjct 715 -----DAFADHRIDEQITKALDRKVWLPSGGYLVIDRTEAMTVIDVNTGKFTGSGGNLEE 769 Query 663 TVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQVS 722 TVT+NNLE+AEEIVRQLRLRDIGGI+VIDFIDMVLESNR+LVLRRLTE L RDRTRHQV+ Sbjct 770 TVTRNNLESAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDRTRHQVA 829 Query 723 EVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSA 767 EVTSLGLVQ+TRK++GTGL+EAFST C +C GRG+++ +P +A Sbjct 830 EVTSLGLVQMTRKKIGTGLLEAFSTPCEHCKGRGVVVSTEPQRTA 874 Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust. Identities = 27/59 (46%), Positives = 36/59 (62%), Gaps = 0/59 (0%) Query 11 PEPSQHEELPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDRVDAVRVRDLL 69 P S+ ELP R+RVH+LA+ LG +SR +L L L RSA S+V + A RV +L Sbjct 18 PTTSRLGELPPRIRVHALAKLLGLSSRDLLGKLAELGESPRSAQSSVTKEVAHRVAVIL 76 >gi|134097992|ref|YP_001103653.1| ribonuclease [Saccharopolyspora erythraea NRRL 2338] gi|133910615|emb|CAM00728.1| ribonuclease, Rne/Rng family [Saccharopolyspora erythraea NRRL 2338] Length=1075 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/510 (69%), Positives = 407/510 (80%), Gaps = 26/510 (5%) Query 258 PPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKRQRRRDGRDAGRRRPPVL 317 PPNTVVH R + +S D E++ + GSTRLEAKRQRRRDGR+AGRRR PVL Sbjct 336 PPNTVVHVRESAPEGRHDSSDD------EVRAVKGSTRLEAKRQRRRDGREAGRRRAPVL 389 Query 318 SEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGIVVEHFVTSAASASLVGN 377 SEAEFLARRE+V+R MVVR+ TQIAVLED ++VE+FVTSA S SLVGN Sbjct 390 SEAEFLARRESVDRRMVVRE---------NGDQTQIAVLEDNVLVENFVTSAGSGSLVGN 440 Query 378 IYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGADRKIEQALKPGDYVVVQ 437 +YLG VQNVLPSMEAAFVDIGRGRN VLYAGEV+WDAAGL G R+IEQAL GD V+VQ Sbjct 441 VYLGRVQNVLPSMEAAFVDIGRGRNAVLYAGEVDWDAAGLAGKARRIEQALSTGDSVLVQ 500 Query 438 VSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTERQRLKEILREVVPSDAG 497 V+KDPVGHKGARLTTQ+SL GRFLVYVPG +TGISRKLPD ER+RLKEIL+ +VP +AG Sbjct 501 VTKDPVGHKGARLTTQISLPGRFLVYVPGGGATGISRKLPDNERKRLKEILKRIVPENAG 560 Query 498 VIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGAAVALYEEPDVLVKVIRD 557 VIIRTASEG E+ + DV RL+ +WE I+ KA K A A LYEEPD+L+KV+RD Sbjct 561 VIIRTASEGTSEEALDRDVRRLQAQWEVIKEKADSPK---AQAPQLLYEEPDLLIKVVRD 617 Query 558 LFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADGPDGQSAPDVFTVHRIDE 617 LF EDF + V G++AW+TI YV VAP+L +L+K+ + DVFT RI E Sbjct 618 LFTEDFSAMAVQGNQAWDTIEAYVKHVAPDLAGRLSKHVGKN--------DVFTEQRISE 669 Query 618 QLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVR 677 Q+AKA+DRKVWLPSGG LVIDRTEAMTVIDVNTGKFTG+GGNLE+TVT+NNLEAAEEIVR Sbjct 670 QIAKALDRKVWLPSGGYLVIDRTEAMTVIDVNTGKFTGSGGNLEETVTRNNLEAAEEIVR 729 Query 678 QLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQVSEVTSLGLVQLTRKRL 737 QLRLRDIGGI+VIDFIDMVLESNRDLVLRRLTE L RDRTRHQV+EVTSLGLVQ+TRKR+ Sbjct 730 QLRLRDIGGIIVIDFIDMVLESNRDLVLRRLTECLGRDRTRHQVAEVTSLGLVQMTRKRV 789 Query 738 GTGLIEAFSTSCPNCSGRGILLHADPVDSA 767 GTGL+EA+S++C +C GRG+L+ DPV A Sbjct 790 GTGLLEAYSSTCEHCRGRGLLVSTDPVTHA 819 Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/59 (45%), Positives = 38/59 (65%), Gaps = 4/59 (6%) Query 11 PEPSQHE----ELPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDRVDAVRV 65 P P+Q + ELP +LRVH+LA+ LG +SR ++ L +L VRSA S + R A++V Sbjct 16 PTPTQEDQGTFELPAKLRVHALAKLLGASSREIITTLESLGESVRSAQSNITREVAMQV 74 >gi|226307282|ref|YP_002767242.1| ribonuclease [Rhodococcus erythropolis PR4] gi|226186399|dbj|BAH34503.1| putative ribonuclease [Rhodococcus erythropolis PR4] Length=1099 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/665 (61%), Positives = 484/665 (73%), Gaps = 66/665 (9%) Query 183 DQQSEPRAQQFTSADAAETDDGDDRDSEDTEAGDNGEDENGSLEAGNRRRRRRRRRKSAS 242 +Q+S P A + + DAA + GD SE T D+ ++ L+A RRRRRRR+ + Sbjct 315 EQESAPAAVEKQTDDAAGEESGDK--SESTADADSENADDSDLDADGSSRRRRRRRRRKT 372 Query 243 GDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKRQR 302 G D DDPPNTVVHER PR + + E++GI GSTRLEAKRQR Sbjct 373 GTDGATDATATSEDDPPNTVVHEREPRNKTRVKD---------EVQGISGSTRLEAKRQR 423 Query 303 RRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGIVV 362 RRDGRDAGRRRPP+L+E+EFLARREAV+RVMVVRDR + P TQ+AVLEDG++V Sbjct 424 RRDGRDAGRRRPPILTESEFLARREAVDRVMVVRDRADSGQP---HATTQVAVLEDGVLV 480 Query 363 EHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGADR 422 EHFVT++ASAS+VGN+YLG VQNVLPSMEAAF+DIGRGRNGVLYAGEVNW+AAGLGG R Sbjct 481 EHFVTNSASASMVGNVYLGRVQNVLPSMEAAFIDIGRGRNGVLYAGEVNWEAAGLGGNSR 540 Query 423 KIEQALKPGDYVVVQVS----------------KDPVGHKGARLTTQVSLAGRFLVYVPG 466 KIEQALKPGD V+VQVS LAGRFLVYVPG Sbjct 541 KIEQALKPGDQVLVQVSKDPVGHKGARLTTQIS----------------LAGRFLVYVPG 584 Query 467 ASSTGISRKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQI 526 +STGISRKLPDTER+RLKEILR++VP+DAGVIIRTASEGV E+++ DV RL+ +W I Sbjct 585 GTSTGISRKLPDTERKRLKEILRDIVPADAGVIIRTASEGVSEEELARDVTRLQAQWAGI 644 Query 527 EAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAP 586 E +A +G ALYEEPD+LVKVIRDLFNEDF L++ G++A T+ Y+NSVAP Sbjct 645 EEQAAAADTGKSGNPQALYEEPDMLVKVIRDLFNEDFSKLVIEGEKAHTTVENYINSVAP 704 Query 587 ELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVI 646 +L+ +L KY +G DVF RIDEQLAKA+DRKVWLPSGGTLVIDRTEAMTV+ Sbjct 705 DLLPRLEKYTPNNG------IDVFAARRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVV 758 Query 647 DVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLR 706 DVNTGKFTGAGGNLE+TVT+NNLEAAEEIVRQ+RLRDIGG++V+DFIDMVLESNRDLVLR Sbjct 759 DVNTGKFTGAGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLESNRDLVLR 818 Query 707 RLTESLARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPV-- 764 RLTE L RDRTRHQVSEVTSLGLVQ+TRK+LGTGL+EAFST+C +C GRGI++H++PV Sbjct 819 RLTECLGRDRTRHQVSEVTSLGLVQMTRKKLGTGLVEAFSTTCEHCHGRGIIVHSEPVEV 878 Query 765 ----DSAAATG-RKSEPG-ARRGKRSK--KSRSEESSDRSM----VAKVPVHAPGEHPMF 812 D + +G ++SE G +R+ KR + KS S ES+ + V V HP+ Sbjct 879 KSSDDGGSRSGSQRSESGTSRKNKRGRGDKSPSTESNGQEAPAPEVPAVDATVKRAHPVA 938 Query 813 KAMAA 817 AMA+ Sbjct 939 LAMAS 943 Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/57 (44%), Positives = 36/57 (64%), Gaps = 0/57 (0%) Query 18 ELPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDRVDAVRVRDLLATHLE 74 E PD++RVH+LA+ LG TS++VL AL +RSA S++ R A R+ L + E Sbjct 33 EFPDKMRVHALAKLLGVTSKQVLAEAAALGTELRSAQSSLQRDVAQRIHASLTSAAE 89 >gi|332670933|ref|YP_004453941.1| ribonuclease, Rne/Rng family [Cellulomonas fimi ATCC 484] gi|332339971|gb|AEE46554.1| ribonuclease, Rne/Rng family [Cellulomonas fimi ATCC 484] Length=1127 Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/525 (66%), Positives = 416/525 (80%), Gaps = 28/525 (5%) Query 284 STEIKGIDGSTRLEAKRQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEP 343 S E+ + GSTRLEAKRQRRR+GRDAGRRR ++SEAEFLARRE+VER MVVR+R Sbjct 485 SDEVTALRGSTRLEAKRQRRREGRDAGRRRQ-IISEAEFLARRESVERTMVVRERAG--- 540 Query 344 PLPGTRYTQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNG 403 TQIAVLEDG++VEH+V++ A S+VGN+YLG VQNVLPSMEAAFVD+G+GRN Sbjct 541 ------RTQIAVLEDGVLVEHYVSNQAQTSMVGNVYLGRVQNVLPSMEAAFVDVGKGRNA 594 Query 404 VLYAGEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVY 463 VLYAGEVNWDAAGL G R+IEQALK GD V+VQV+KDP+GHKGARLT+QV+LAGR+LV+ Sbjct 595 VLYAGEVNWDAAGLEGQPRRIEQALKSGDSVLVQVTKDPIGHKGARLTSQVTLAGRYLVF 654 Query 464 VPGASSTGISRKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERW 523 VPG TGISRKLPDTER RLK+ILREVVP AGVI+RTA+EG E+++RADVARL+ +W Sbjct 655 VPGGGMTGISRKLPDTERNRLKKILREVVPDSAGVIVRTAAEGASEEELRADVARLQGQW 714 Query 524 EQIEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNS 583 E IE KA + A A L EPD+ ++V+RD+FN+DF L+V GDEAW+TI+ Y++ Sbjct 715 EAIEKKA-----RTASAPALLQGEPDMAIRVVRDIFNDDFSALVVQGDEAWSTISSYIDE 769 Query 584 VAPELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAM 643 +AP+L K++K+ DVFTVHR+DEQLAK MDRKVWLPSGG+LVIDRTEAM Sbjct 770 LAPDLAQKVSKWTGTQ--------DVFTVHRVDEQLAKGMDRKVWLPSGGSLVIDRTEAM 821 Query 644 TVIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDL 703 TV+DVNTGKFTG+GG LE+TVT+NNLEAAEEIVRQLRLRDIGGI+VIDFIDMVLESNRDL Sbjct 822 TVVDVNTGKFTGSGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDL 881 Query 704 VLRRLTESLARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADP 763 VLRRL E L RDRT+HQV+EVTSLGLVQ+TRKR+G GL+EAFS +C +C GRG ++HADP Sbjct 882 VLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSETCEHCHGRGFIVHADP 941 Query 764 VDS-----AAATGRKSEPGARRGKRSKKSRSEESSDRSMVAKVPV 803 V+ A A G + R K+ ++E++ + VPV Sbjct 942 VEKNGRPEAGAPQAPVAEGESKRSRRKRGTAKEAAPAAQHPGVPV 986 >gi|300788544|ref|YP_003768835.1| ribonuclease [Amycolatopsis mediterranei U32] gi|299798058|gb|ADJ48433.1| ribonuclease [Amycolatopsis mediterranei U32] Length=980 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/507 (68%), Positives = 402/507 (80%), Gaps = 21/507 (4%) Query 256 DDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKRQRRRDGRDAGRRRPP 315 DDPPNTV H R KA ++ E++ + GSTRLEAKRQRRRDGR+AGRRR P Sbjct 287 DDPPNTVTHVR----QAKAEQAERERPARDEVRSVRGSTRLEAKRQRRRDGREAGRRRAP 342 Query 316 VLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGIVVEHFVTSAASASLV 375 +LSEAEFLARRE+VER MVV + + TQIAVLEDG++VEHFVT + S S+V Sbjct 343 ILSEAEFLARRESVERTMVVAEHGDS---------TQIAVLEDGVLVEHFVTQSGSGSIV 393 Query 376 GNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGADRKIEQALKPGDYVV 435 GN+YLG VQNVLPSMEAAF+DIGRGRN VLYAGEV+WDAAGL G RKIEQAL GD V+ Sbjct 394 GNVYLGRVQNVLPSMEAAFIDIGRGRNAVLYAGEVDWDAAGLEGKARKIEQALSTGDSVL 453 Query 436 VQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTERQRLKEILREVVPSD 495 VQV+KDPVGHKGARLTTQ+SL GRFLVYVP +TGISRKLP+ ER+RLK+IL+ +VP D Sbjct 454 VQVTKDPVGHKGARLTTQISLPGRFLVYVPAGGATGISRKLPENERRRLKDILKRIVPED 513 Query 496 AGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGAAVALYEEPDVLVKVI 555 AGVIIRTASEG+ E+++ DV RL+ +W+ I+ KA K GA LYEEPD+LVKV+ Sbjct 514 AGVIIRTASEGIGEEELGRDVDRLKAQWDVIKEKAAAGSGKKGGAPTMLYEEPDLLVKVV 573 Query 556 RDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADGPDGQSAPDVFTVHRI 615 RDLF EDF L + G+ +W TIN YV+ VAPEL +L +Y D F HRI Sbjct 574 RDLFTEDFTKLEIQGNRSWETINGYVSHVAPELTERLRRYTGTG--------DAFADHRI 625 Query 616 DEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNLEQTVTKNNLEAAEEI 675 DEQ+ KA+DRKVWLPSGG LVIDRTEAMTVIDVNTGKFTG+GGNLE+TVT+NNLE+AEEI Sbjct 626 DEQITKALDRKVWLPSGGYLVIDRTEAMTVIDVNTGKFTGSGGNLEETVTRNNLESAEEI 685 Query 676 VRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQVSEVTSLGLVQLTRK 735 VRQLRLRDIGGI+VIDFIDMVLESNR+LVLRRLTE L RDRTRHQV+EVTSLGLVQ+TRK Sbjct 686 VRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDRTRHQVAEVTSLGLVQMTRK 745 Query 736 RLGTGLIEAFSTSCPNCSGRGILLHAD 762 ++GTGL+EAFST C +C GRG+L+ + Sbjct 746 KIGTGLLEAFSTPCEHCKGRGVLVSTE 772 >gi|340530149|gb|AEK45354.1| ribonuclease [Amycolatopsis mediterranei S699] Length=980 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/507 (68%), Positives = 402/507 (80%), Gaps = 21/507 (4%) Query 256 DDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKRQRRRDGRDAGRRRPP 315 DDPPNTV H R KA ++ E++ + GSTRLEAKRQRRRDGR+AGRRR P Sbjct 287 DDPPNTVTHVR----QAKAEQAERERPARDEVRSVRGSTRLEAKRQRRRDGREAGRRRAP 342 Query 316 VLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGIVVEHFVTSAASASLV 375 +LSEAEFLARRE+VER MVV + + TQIAVLEDG++VEHFVT + S S+V Sbjct 343 ILSEAEFLARRESVERTMVVAEHGDS---------TQIAVLEDGVLVEHFVTQSGSGSIV 393 Query 376 GNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGADRKIEQALKPGDYVV 435 GN+YLG VQNVLPSMEAAF+DIGRGRN VLYAGEV+WDAAGL G RKIEQAL GD V+ Sbjct 394 GNVYLGRVQNVLPSMEAAFIDIGRGRNAVLYAGEVDWDAAGLEGKARKIEQALSTGDSVL 453 Query 436 VQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTERQRLKEILREVVPSD 495 VQV+KDPVGHKGARLTTQ+SL GRFLVYVP +TGISRKLP+ ER+RLK+IL+ +VP D Sbjct 454 VQVTKDPVGHKGARLTTQISLPGRFLVYVPAGGATGISRKLPENERRRLKDILKRIVPED 513 Query 496 AGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGAAVALYEEPDVLVKVI 555 AGVIIRTASEG+ E+++ DV RL+ +W+ I+ KA K GA LYEEPD+LVKV+ Sbjct 514 AGVIIRTASEGIGEEELGRDVDRLKAQWDVIKEKAAAGSGKKGGAPTMLYEEPDLLVKVV 573 Query 556 RDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADGPDGQSAPDVFTVHRI 615 RDLF EDF L + G+ +W TIN YV+ VAPEL +L +Y D F HRI Sbjct 574 RDLFTEDFTKLEIQGNRSWETINGYVSHVAPELTERLRRYTGTG--------DAFADHRI 625 Query 616 DEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNLEQTVTKNNLEAAEEI 675 DEQ+ KA+DRKVWLPSGG LVIDRTEAMTVIDVNTGKFTG+GGNLE+TVT+NNLE+AEEI Sbjct 626 DEQITKALDRKVWLPSGGYLVIDRTEAMTVIDVNTGKFTGSGGNLEETVTRNNLESAEEI 685 Query 676 VRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQVSEVTSLGLVQLTRK 735 VRQLRLRDIGGI+VIDFIDMVLESNR+LVLRRLTE L RDRTRHQV+EVTSLGLVQ+TRK Sbjct 686 VRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDRTRHQVAEVTSLGLVQMTRK 745 Query 736 RLGTGLIEAFSTSCPNCSGRGILLHAD 762 ++GTGL+EAFST C +C GRG+L+ + Sbjct 746 KIGTGLLEAFSTPCEHCKGRGVLVSTE 772 >gi|256396379|ref|YP_003117943.1| ribonuclease, Rne/Rng family [Catenulispora acidiphila DSM 44928] gi|256362605|gb|ACU76102.1| ribonuclease, Rne/Rng family [Catenulispora acidiphila DSM 44928] Length=1334 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/512 (66%), Positives = 408/512 (80%), Gaps = 22/512 (4%) Query 253 PLPDDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKRQRRRDGRDAGRR 312 P PDDPPNTVV R R ++ + + GG +++G+ GSTRLEAK+QRRR+GRD GRR Sbjct 607 PGPDDPPNTVVKVRESRV--RSRDRKGGGLADDDVQGVRGSTRLEAKKQRRREGRDTGRR 664 Query 313 RPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGIVVEHFVTSAASA 372 R P+++EAEFLARRE+VERVMVVR G R TQI VLEDG++VEH+V A SA Sbjct 665 RAPLITEAEFLARRESVERVMVVRQS--------GDR-TQIGVLEDGVLVEHYVNRAQSA 715 Query 373 SLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGADRKIEQALKPGD 432 S VGN+YLG VQNVLPSMEAAFVDIG+GRN VLYAGEVN++AAG+ G ++IE LK G Sbjct 716 SYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFEAAGITGQAKRIESVLKSGQ 775 Query 433 YVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTERQRLKEILREVV 492 V+ QV+KDP+GHKGARLT+Q+SL GR+LVYVP + TGISRKLP+ ER RLK IL+ VV Sbjct 776 AVLTQVTKDPIGHKGARLTSQISLPGRYLVYVPEGTMTGISRKLPENERNRLKTILKAVV 835 Query 493 PSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGAAVALYEEPDVLV 552 P AGVI+RTA+EG ED++R DV RL +WE+I+ KA K A A LY EPD+ V Sbjct 836 PEHAGVIVRTAAEGATEDELRRDVERLSAQWEEIQRKA---KTSAGSAPTLLYGEPDLTV 892 Query 553 KVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADGPDGQSAPDVFTV 612 +V+RD+FNEDF L+VSGD+AW+TI EYV VAP+L +L ++ S D+F V Sbjct 893 RVVRDIFNEDFSKLVVSGDQAWDTIREYVGGVAPDLAPRLERWTSEQ--------DIFAV 944 Query 613 HRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNLEQTVTKNNLEAA 672 HR+DEQLAKA+DRKVWLPSGG+LVIDRTEAM VIDVNTGKFTG+GGNLE+TVT+NN+EAA Sbjct 945 HRVDEQLAKALDRKVWLPSGGSLVIDRTEAMVVIDVNTGKFTGSGGNLEETVTRNNIEAA 1004 Query 673 EEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQVSEVTSLGLVQL 732 EEIVRQLRLRD+GGI+VIDFIDMVLESNRDLV+RRL E L RDRT+HQV+EVTSLGL+Q+ Sbjct 1005 EEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVMRRLLECLGRDRTKHQVAEVTSLGLIQM 1064 Query 733 TRKRLGTGLIEAFSTSCPNCSGRGILLHADPV 764 TRKR+G GL+EAFS +C C+GRG+L+H +PV Sbjct 1065 TRKRVGQGLLEAFSETCDKCNGRGVLVHMEPV 1096 >gi|296130124|ref|YP_003637374.1| ribonuclease, Rne/Rng family [Cellulomonas flavigena DSM 20109] gi|296021939|gb|ADG75175.1| ribonuclease, Rne/Rng family [Cellulomonas flavigena DSM 20109] Length=1117 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/515 (67%), Positives = 414/515 (81%), Gaps = 26/515 (5%) Query 282 SGSTEIKGIDGSTRLEAKRQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRT 341 S E+ + GSTRLEAKRQRRR+GRDAGRRR V++EAEFLARRE+VER MVVR+ Sbjct 457 SSGDEVTALRGSTRLEAKRQRRREGRDAGRRRQ-VITEAEFLARRESVERAMVVREI--- 512 Query 342 EPPLPGTRYTQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGR 401 G R TQIAVLEDG++VEH+V++ A AS+VGN+YLG VQNVLPSMEAAFVD+G+GR Sbjct 513 -----GGR-TQIAVLEDGVLVEHYVSNQAQASMVGNVYLGRVQNVLPSMEAAFVDVGKGR 566 Query 402 NGVLYAGEVNWDAAGL-GGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRF 460 N VLYAGEVNWDAAGL GG R+IEQALK GD V+VQV+KDP+GHKGARLT+Q++LAGR+ Sbjct 567 NAVLYAGEVNWDAAGLDGGQPRRIEQALKSGDSVLVQVTKDPIGHKGARLTSQITLAGRY 626 Query 461 LVYVPGASSTGISRKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLR 520 LVYVPG TGISRKLPDTER RLK+ILR++VP AGVI+RTA+EG E+++RADVARL+ Sbjct 627 LVYVPGGGMTGISRKLPDTERSRLKKILRDLVPDSAGVIVRTAAEGASEEELRADVARLQ 686 Query 521 ERWEQIEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEY 580 +WE IE K + A A L EPD+ ++V+RD+FN+DF L+V GD+AW+TI+ Y Sbjct 687 GQWEAIE-----KKRRTANAPALLQGEPDMAIRVVRDIFNDDFSSLVVQGDDAWSTISTY 741 Query 581 VNSVAPELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRT 640 V +AP+L +++ K+ DVF+VHR+DEQLAK MDRKVWLPSGG+LVIDRT Sbjct 742 VGELAPDLAARVEKWTGTQ--------DVFSVHRVDEQLAKGMDRKVWLPSGGSLVIDRT 793 Query 641 EAMTVIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESN 700 EAMTV+DVNTGKFTGAGG LE+TVT+NNLEAAEEIVRQLRLRDIGGI+VIDFIDMVLESN Sbjct 794 EAMTVVDVNTGKFTGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESN 853 Query 701 RDLVLRRLTESLARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLH 760 RDLVLRRL E L RDRT+HQV+EVTSLGLVQ+TRKR+G GL+EAFS +C +C GRG ++H Sbjct 854 RDLVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSETCEHCHGRGFIVH 913 Query 761 ADPVDSAAATGRKSEPGARRG--KRSKKSRSEESS 793 ADPV + + P G KRS++ R+E S+ Sbjct 914 ADPVGKGGRPEQHAPPAPEAGESKRSRRKRAEAST 948 >gi|291008538|ref|ZP_06566511.1| ribonuclease [Saccharopolyspora erythraea NRRL 2338] Length=685 Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/482 (71%), Positives = 395/482 (82%), Gaps = 20/482 (4%) Query 286 EIKGIDGSTRLEAKRQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPL 345 E++ + GSTRLEAKRQRRRDGR+AGRRR PVLSEAEFLARRE+V+R MVVR+ Sbjct 18 EVRAVKGSTRLEAKRQRRRDGREAGRRRAPVLSEAEFLARRESVDRRMVVRE-------- 69 Query 346 PGTRYTQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVL 405 TQIAVLED ++VE+FVTSA S SLVGN+YLG VQNVLPSMEAAFVDIGRGRN VL Sbjct 70 -NGDQTQIAVLEDNVLVENFVTSAGSGSLVGNVYLGRVQNVLPSMEAAFVDIGRGRNAVL 128 Query 406 YAGEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVP 465 YAGEV+WDAAGL G R+IEQAL GD V+VQV+KDPVGHKGARLTTQ+SL GRFLVYVP Sbjct 129 YAGEVDWDAAGLAGKARRIEQALSTGDSVLVQVTKDPVGHKGARLTTQISLPGRFLVYVP 188 Query 466 GASSTGISRKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQ 525 G +TGISRKLPD ER+RLKEIL+ +VP +AGVIIRTASEG E+ + DV RL+ +WE Sbjct 189 GGGATGISRKLPDNERKRLKEILKRIVPENAGVIIRTASEGTSEEALDRDVRRLQAQWEV 248 Query 526 IEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVA 585 I+ KA K A A LYEEPD+L+KV+RDLF EDF + V G++AW+TI YV VA Sbjct 249 IKEKADSPK---AQAPQLLYEEPDLLIKVVRDLFTEDFSAMAVQGNQAWDTIEAYVKHVA 305 Query 586 PELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTV 645 P+L +L+K+ + DVFT RI EQ+AKA+DRKVWLPSGG LVIDRTEAMTV Sbjct 306 PDLAGRLSKHVGKN--------DVFTEQRISEQIAKALDRKVWLPSGGYLVIDRTEAMTV 357 Query 646 IDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVL 705 IDVNTGKFTG+GGNLE+TVT+NNLEAAEEIVRQLRLRDIGGI+VIDFIDMVLESNRDLVL Sbjct 358 IDVNTGKFTGSGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVL 417 Query 706 RRLTESLARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVD 765 RRLTE L RDRTRHQV+EVTSLGLVQ+TRKR+GTGL+EA+S++C +C GRG+L+ DPV Sbjct 418 RRLTECLGRDRTRHQVAEVTSLGLVQMTRKRVGTGLLEAYSSTCEHCRGRGLLVSTDPVT 477 Query 766 SA 767 A Sbjct 478 HA 479 Lambda K H 0.311 0.132 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2372331448824 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40