BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2446c
Length=123
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609583|ref|NP_216962.1| integral membrane protein [Mycobact... 234 2e-60
gi|253798474|ref|YP_003031475.1| hypothetical protein TBMG_01526... 233 6e-60
gi|296170487|ref|ZP_06852074.1| conserved hypothetical protein [... 171 3e-41
gi|254821841|ref|ZP_05226842.1| putative integral membrane prote... 166 1e-39
gi|342857844|ref|ZP_08714500.1| hypothetical protein MCOL_03180 ... 161 3e-38
gi|183983750|ref|YP_001852041.1| hypothetical protein MMAR_3770 ... 161 3e-38
gi|118618978|ref|YP_907310.1| hypothetical protein MUL_3717 [Myc... 158 2e-37
gi|41408367|ref|NP_961203.1| hypothetical protein MAP2269c [Myco... 153 9e-36
gi|240170918|ref|ZP_04749577.1| hypothetical protein MkanA1_1652... 152 2e-35
gi|120404903|ref|YP_954732.1| hypothetical protein Mvan_3949 [My... 148 3e-34
gi|108800522|ref|YP_640719.1| hypothetical protein Mmcs_3556 [My... 144 4e-33
gi|145223219|ref|YP_001133897.1| hypothetical protein Mflv_2632 ... 140 5e-32
gi|333990101|ref|YP_004522715.1| hypothetical protein JDM601_146... 130 7e-29
gi|169628695|ref|YP_001702344.1| hypothetical protein MAB_1605 [... 130 9e-29
gi|118467707|ref|YP_888892.1| hypothetical protein MSMEG_4628 [M... 129 2e-28
gi|15827772|ref|NP_302035.1| hypothetical protein ML1470 [Mycoba... 116 1e-24
gi|229493115|ref|ZP_04386907.1| conserved hypothetical protein [... 114 5e-24
gi|226307285|ref|YP_002767245.1| hypothetical protein RER_37980 ... 113 8e-24
gi|226360452|ref|YP_002778230.1| hypothetical protein ROP_10380 ... 104 5e-21
gi|111018326|ref|YP_701298.1| hypothetical protein RHA1_ro01316 ... 103 8e-21
gi|333918791|ref|YP_004492372.1| hypothetical protein AS9A_1120 ... 100 7e-20
gi|312140347|ref|YP_004007683.1| integral membrane protein [Rhod... 97.8 5e-19
gi|343925347|ref|ZP_08764872.1| hypothetical protein GOALK_040_0... 90.1 1e-16
gi|326382836|ref|ZP_08204526.1| hypothetical protein SCNU_07853 ... 88.6 3e-16
gi|260578306|ref|ZP_05846222.1| membrane protein [Corynebacteriu... 85.5 2e-15
gi|68535624|ref|YP_250329.1| hypothetical protein jk0552 [Coryne... 85.5 2e-15
gi|300788554|ref|YP_003768845.1| hypothetical protein AMED_6717 ... 84.7 4e-15
gi|296394165|ref|YP_003659049.1| hypothetical protein Srot_1758 ... 83.6 8e-15
gi|317507071|ref|ZP_07964834.1| 30S ribosomal protein S3 [Segnil... 83.6 1e-14
gi|54023317|ref|YP_117559.1| hypothetical protein nfa13500 [Noca... 83.2 1e-14
gi|262201992|ref|YP_003273200.1| hypothetical protein Gbro_2055 ... 82.4 2e-14
gi|258651729|ref|YP_003200885.1| hypothetical protein Namu_1497 ... 82.4 2e-14
gi|296139193|ref|YP_003646436.1| hypothetical protein Tpau_1470 ... 82.4 2e-14
gi|257055282|ref|YP_003133114.1| hypothetical protein Svir_12380... 82.0 3e-14
gi|319949125|ref|ZP_08023217.1| hypothetical protein ES5_06942 [... 81.6 4e-14
gi|256375308|ref|YP_003098968.1| hypothetical protein Amir_1167 ... 79.0 2e-13
gi|336325190|ref|YP_004605156.1| hypothetical protein CRES_0632 ... 79.0 2e-13
gi|300780639|ref|ZP_07090494.1| conserved hypothetical protein [... 78.2 4e-13
gi|134097974|ref|YP_001103635.1| hypothetical protein SACE_1388 ... 76.6 1e-12
gi|302528927|ref|ZP_07281269.1| predicted protein [Streptomyces ... 75.9 2e-12
gi|334564153|ref|ZP_08517144.1| hypothetical protein CbovD2_0622... 73.9 7e-12
gi|300859014|ref|YP_003783997.1| hypothetical protein cpfrc_0159... 73.9 8e-12
gi|237785944|ref|YP_002906649.1| hypothetical protein ckrop_1365... 73.6 1e-11
gi|337291357|ref|YP_004630378.1| hypothetical protein CULC22_017... 71.2 5e-11
gi|331695817|ref|YP_004332056.1| hypothetical protein Psed_1975 ... 70.9 6e-11
gi|227548729|ref|ZP_03978778.1| conserved hypothetical protein [... 69.3 2e-10
gi|225021676|ref|ZP_03710868.1| hypothetical protein CORMATOL_01... 68.9 2e-10
gi|227488337|ref|ZP_03918653.1| conserved hypothetical protein [... 68.9 2e-10
gi|213966156|ref|ZP_03394342.1| conserved hypothetical protein [... 67.4 7e-10
gi|227542950|ref|ZP_03972999.1| conserved hypothetical protein [... 67.0 9e-10
>gi|15609583|ref|NP_216962.1| integral membrane protein [Mycobacterium tuberculosis H37Rv]
gi|15841970|ref|NP_337007.1| hypothetical protein MT2522 [Mycobacterium tuberculosis CDC1551]
gi|31793627|ref|NP_856120.1| integral membrane protein [Mycobacterium bovis AF2122/97]
64 more sequence titles
Length=123
Score = 234 bits (598), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 123/123 (100%), Positives = 123/123 (100%), Gaps = 0/123 (0%)
Query 1 MTDRSREPADPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAVLLI 60
MTDRSREPADPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAVLLI
Sbjct 1 MTDRSREPADPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAVLLI 60
Query 61 LLTGLQRRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRRRDYR 120
LLTGLQRRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRRRDYR
Sbjct 61 LLTGLQRRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRRRDYR 120
Query 121 VSQ 123
VSQ
Sbjct 121 VSQ 123
>gi|253798474|ref|YP_003031475.1| hypothetical protein TBMG_01526 [Mycobacterium tuberculosis KZN
1435]
gi|254551496|ref|ZP_05141943.1| hypothetical protein Mtube_13719 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|289553762|ref|ZP_06442972.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
9 more sequence titles
Length=123
Score = 233 bits (595), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 122/123 (99%), Positives = 122/123 (99%), Gaps = 0/123 (0%)
Query 1 MTDRSREPADPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAVLLI 60
MTDRSREPADPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAVLLI
Sbjct 1 MTDRSREPADPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAVLLI 60
Query 61 LLTGLQRRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRRRDYR 120
LLTGLQRRPWAIWVNLGAQPVLV GFAVYPGVGFIGVLFAALWVLIAYLRAEVRRRRDYR
Sbjct 61 LLTGLQRRPWAIWVNLGAQPVLVTGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRRRDYR 120
Query 121 VSQ 123
VSQ
Sbjct 121 VSQ 123
>gi|296170487|ref|ZP_06852074.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295894839|gb|EFG74561.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=116
Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 89/117 (77%), Positives = 101/117 (87%), Gaps = 2/117 (1%)
Query 1 MTDRSREPADPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAVLLI 60
MT+++R ADPWK F AVMAATL+LEAIVVLLAIPVV AVGGGL SLGYL+G+A LL+
Sbjct 1 MTEQNR--ADPWKSFGAVMAATLLLEAIVVLLAIPVVSAVGGGLTSVSLGYLIGVAALLV 58
Query 61 LLTGLQRRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRRR 117
LL G+QR+PWAIWVNLG Q +L+AGFAVYPGVGFIGVLF LW LIAY RAEVRRR+
Sbjct 59 LLGGVQRKPWAIWVNLGVQLLLLAGFAVYPGVGFIGVLFTGLWALIAYFRAEVRRRQ 115
>gi|254821841|ref|ZP_05226842.1| putative integral membrane protein [Mycobacterium intracellulare
ATCC 13950]
Length=116
Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 88/117 (76%), Positives = 98/117 (84%), Gaps = 2/117 (1%)
Query 1 MTDRSREPADPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAVLLI 60
MTD++R DPW+ F AVMA TL LEAIVVLLAIPVV AVGGGL ASL YL+GLAVLLI
Sbjct 1 MTDQNRP--DPWRSFGAVMALTLFLEAIVVLLAIPVVGAVGGGLTTASLAYLIGLAVLLI 58
Query 61 LLTGLQRRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRRR 117
L+ G+QR+PWAIW NLG Q +L+AGFAVYPGVGFIGVLF LW LIAY RAEVRRR+
Sbjct 59 LMGGVQRKPWAIWANLGVQVILLAGFAVYPGVGFIGVLFTGLWGLIAYFRAEVRRRQ 115
>gi|342857844|ref|ZP_08714500.1| hypothetical protein MCOL_03180 [Mycobacterium colombiense CECT
3035]
gi|342135177|gb|EGT88343.1| hypothetical protein MCOL_03180 [Mycobacterium colombiense CECT
3035]
Length=126
Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 85/110 (78%), Positives = 93/110 (85%), Gaps = 0/110 (0%)
Query 8 PADPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAVLLILLTGLQR 67
PADPW+ F AVMA TL LEAIVVLLAIPVV AVGGGL SL YL+GLAVLLIL+ G+QR
Sbjct 16 PADPWRSFGAVMALTLFLEAIVVLLAIPVVGAVGGGLTTVSLVYLIGLAVLLILMAGVQR 75
Query 68 RPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRRR 117
+PWAIW NLG Q +L+AGFAVYPGVGFIGVLF LW LIAY RAEVRRR+
Sbjct 76 KPWAIWANLGVQVILLAGFAVYPGVGFIGVLFTGLWGLIAYFRAEVRRRQ 125
>gi|183983750|ref|YP_001852041.1| hypothetical protein MMAR_3770 [Mycobacterium marinum M]
gi|183177076|gb|ACC42186.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=134
Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/126 (69%), Positives = 98/126 (78%), Gaps = 9/126 (7%)
Query 1 MTDRSREPA---------DPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGY 51
MT + +EPA DPWK F +VMAATLILEAIVVLLAIPVV AVGGGL PASLGY
Sbjct 1 MTGQPQEPANHGDPAPQSDPWKSFGSVMAATLILEAIVVLLAIPVVGAVGGGLTPASLGY 60
Query 52 LVGLAVLLILLTGLQRRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRA 111
L+GLAV L+LL G+QRRPWAIW NLG Q V +AG VYP VGF+GV+F A+W ++AY RA
Sbjct 61 LIGLAVTLVLLAGVQRRPWAIWANLGIQLVPIAGVFVYPAVGFLGVVFGAVWAMMAYFRA 120
Query 112 EVRRRR 117
EVRRR
Sbjct 121 EVRRRE 126
>gi|118618978|ref|YP_907310.1| hypothetical protein MUL_3717 [Mycobacterium ulcerans Agy99]
gi|118571088|gb|ABL05839.1| conserved hypothetical membrane protein [Mycobacterium ulcerans
Agy99]
Length=134
Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/126 (67%), Positives = 96/126 (77%), Gaps = 9/126 (7%)
Query 1 MTDRSREPA---------DPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGY 51
MT + +EPA DPWK F +VM ATL LEAIVVLLAIPVV AVGGGL PASLGY
Sbjct 1 MTGQPQEPANHGDPAPQSDPWKSFGSVMTATLTLEAIVVLLAIPVVGAVGGGLTPASLGY 60
Query 52 LVGLAVLLILLTGLQRRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRA 111
L+GLAV L+LL G+QRRPWAIW NLG Q V +AG VYP VGF+GV+F A+W ++AY RA
Sbjct 61 LIGLAVTLVLLAGVQRRPWAIWANLGIQLVPIAGVFVYPAVGFLGVVFGAVWAMMAYFRA 120
Query 112 EVRRRR 117
EVRRR
Sbjct 121 EVRRRE 126
>gi|41408367|ref|NP_961203.1| hypothetical protein MAP2269c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118463661|ref|YP_880953.1| hypothetical protein MAV_1726 [Mycobacterium avium 104]
gi|254774541|ref|ZP_05216057.1| hypothetical protein MaviaA2_07708 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41396723|gb|AAS04586.1| hypothetical protein MAP_2269c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118164948|gb|ABK65845.1| conserved hypothetical protein [Mycobacterium avium 104]
gi|336458195|gb|EGO37176.1| hypothetical protein MAPs_14900 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=125
Score = 153 bits (386), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 91/114 (80%), Positives = 99/114 (87%), Gaps = 0/114 (0%)
Query 4 RSREPADPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAVLLILLT 63
+ R ADPW+ F AVMAATLILEAIVVLLAIPVV AVGGGL SLGYL+GLAVLL+LL
Sbjct 11 QQRGAADPWRSFGAVMAATLILEAIVVLLAIPVVGAVGGGLTRVSLGYLIGLAVLLVLLA 70
Query 64 GLQRRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRRR 117
G+QRRPWAIWVNLGAQ +L+AGFAVYPGVGFIGVLF LW LIAY RAEVRRR+
Sbjct 71 GVQRRPWAIWVNLGAQAILLAGFAVYPGVGFIGVLFTGLWALIAYFRAEVRRRQ 124
>gi|240170918|ref|ZP_04749577.1| hypothetical protein MkanA1_16524 [Mycobacterium kansasii ATCC
12478]
Length=134
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/109 (84%), Positives = 97/109 (89%), Gaps = 0/109 (0%)
Query 9 ADPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAVLLILLTGLQRR 68
ADPWK F AVMAATL+LEAIVVLLAIPVV AVGGGL PASLGYL+GLA LILL GLQRR
Sbjct 18 ADPWKSFGAVMAATLLLEAIVVLLAIPVVGAVGGGLSPASLGYLIGLAAALILLAGLQRR 77
Query 69 PWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRRR 117
PWAIWVNLG Q VL+AGFAVYPGVGF+GVLF +WVLIAY RAEVRRR+
Sbjct 78 PWAIWVNLGVQLVLLAGFAVYPGVGFVGVLFTGVWVLIAYFRAEVRRRQ 126
>gi|120404903|ref|YP_954732.1| hypothetical protein Mvan_3949 [Mycobacterium vanbaalenii PYR-1]
gi|119957721|gb|ABM14726.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=128
Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/115 (67%), Positives = 92/115 (80%), Gaps = 0/115 (0%)
Query 4 RSREPADPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAVLLILLT 63
+ P DPWK F VMA TLILEAIVVLLA+PVV AVG GL S GY++G+AVLL+L++
Sbjct 2 NGQPPPDPWKSFRGVMAGTLILEAIVVLLALPVVGAVGPGLTAGSTGYVIGVAVLLVLMS 61
Query 64 GLQRRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRRRD 118
G+Q RPWAIW NLG Q +LVAG+ +YPGVGFIG+LF +W+LIAYLRAEV RR+
Sbjct 62 GVQGRPWAIWANLGVQLLLVAGWFIYPGVGFIGLLFVVVWLLIAYLRAEVLRRQK 116
>gi|108800522|ref|YP_640719.1| hypothetical protein Mmcs_3556 [Mycobacterium sp. MCS]
gi|119869661|ref|YP_939613.1| hypothetical protein Mkms_3629 [Mycobacterium sp. KMS]
gi|126436138|ref|YP_001071829.1| hypothetical protein Mjls_3561 [Mycobacterium sp. JLS]
gi|108770941|gb|ABG09663.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119695750|gb|ABL92823.1| conserved hypothetical protein [Mycobacterium sp. KMS]
gi|126235938|gb|ABN99338.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=133
Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/112 (66%), Positives = 90/112 (81%), Gaps = 0/112 (0%)
Query 7 EPADPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAVLLILLTGLQ 66
+ DPW+ F VMA TLILEAIVVLLA+PVV +VGGGL AS GYL+G AV+L+L++G+Q
Sbjct 11 QAPDPWRSFRGVMAGTLILEAIVVLLALPVVGSVGGGLTAASTGYLIGFAVVLVLMSGIQ 70
Query 67 RRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRRRD 118
RPWAIW NL Q L+AG+AVYPGVG IGV+FA +W++I YLRAEV RR+
Sbjct 71 GRPWAIWANLAVQVGLIAGWAVYPGVGIIGVIFAVVWLMIVYLRAEVLRRQK 122
>gi|145223219|ref|YP_001133897.1| hypothetical protein Mflv_2632 [Mycobacterium gilvum PYR-GCK]
gi|315443677|ref|YP_004076556.1| hypothetical protein Mspyr1_20670 [Mycobacterium sp. Spyr1]
gi|145215705|gb|ABP45109.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
gi|315261980|gb|ADT98721.1| hypothetical protein Mspyr1_20670 [Mycobacterium sp. Spyr1]
Length=127
Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 74/114 (65%), Positives = 89/114 (79%), Gaps = 0/114 (0%)
Query 5 SREPADPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAVLLILLTG 64
S P DPWK F VMA TLILEAIVVLLA+PVV AVG GL P S Y++G AVLL+++ G
Sbjct 2 STPPPDPWKSFRGVMAGTLILEAIVVLLALPVVGAVGPGLTPFSTAYVIGFAVLLVVMAG 61
Query 65 LQRRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRRRD 118
+Q R WAIW N+G Q +LVAG+ +YPGVGFIG+LF +W+LIAYLRAEV RR+
Sbjct 62 VQGRGWAIWANVGVQLLLVAGWFLYPGVGFIGLLFFVVWLLIAYLRAEVLRRQK 115
>gi|333990101|ref|YP_004522715.1| hypothetical protein JDM601_1461 [Mycobacterium sp. JDM601]
gi|333486069|gb|AEF35461.1| integral membrane protein [Mycobacterium sp. JDM601]
Length=116
Score = 130 bits (327), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 78/117 (67%), Positives = 94/117 (81%), Gaps = 1/117 (0%)
Query 1 MTDRSREPADPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAVLLI 60
M+D + P DPW+GF VM+ATLILEAIVVLLA+PVV VGGGL P SL YL+GLA++L+
Sbjct 1 MSDPTAAP-DPWRGFRGVMSATLILEAIVVLLALPVVHVVGGGLSPVSLAYLLGLALVLL 59
Query 61 LLTGLQRRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRRR 117
L TG+Q RPWAIW NLG Q VLVAGF VYP VG +G++FA +W LIA+ RAEV RR+
Sbjct 60 LFTGIQGRPWAIWANLGLQLVLVAGFVVYPAVGIMGLVFAVVWGLIAHFRAEVLRRQ 116
>gi|169628695|ref|YP_001702344.1| hypothetical protein MAB_1605 [Mycobacterium abscessus ATCC 19977]
gi|169240662|emb|CAM61690.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=145
Score = 130 bits (326), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 68/111 (62%), Positives = 81/111 (73%), Gaps = 0/111 (0%)
Query 8 PADPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAVLLILLTGLQR 67
P DPW+ F VMA TLILE IVVLLAIPVV VGGGL P SL YL+G+ V L+LL G+Q
Sbjct 21 PPDPWRSFRGVMAGTLILETIVVLLAIPVVKMVGGGLSPLSLSYLIGVVVALVLLCGMQG 80
Query 68 RPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRRRD 118
RPWA+ NL Q VLVAGF V VGF+G+LF +W+LI Y+R +VR R+
Sbjct 81 RPWALQANLALQLVLVAGFLVNAAVGFVGLLFLGVWLLIWYMRNQVRDRQS 131
>gi|118467707|ref|YP_888892.1| hypothetical protein MSMEG_4628 [Mycobacterium smegmatis str.
MC2 155]
gi|118168994|gb|ABK69890.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=134
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/117 (60%), Positives = 87/117 (75%), Gaps = 3/117 (2%)
Query 3 DRSREPA-DPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAVLLIL 61
D PA DPWK F VMAA LILEAIVVLLA+PVV GGL A+ GYL+GLAV+LIL
Sbjct 8 DNEPAPAKDPWKSFRGVMAACLILEAIVVLLALPVVAV--GGLSAAAGGYLIGLAVVLIL 65
Query 62 LTGLQRRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRRRD 118
+ G+Q RPWA+W NLG Q ++AG + G+GFIGV+F +W+LI YLR EV+RR++
Sbjct 66 MCGVQGRPWALWANLGMQVPVIAGAVFHGGIGFIGVVFLVVWLLIVYLRHEVKRRQE 122
>gi|15827772|ref|NP_302035.1| hypothetical protein ML1470 [Mycobacterium leprae TN]
gi|221230249|ref|YP_002503665.1| hypothetical protein MLBr_01470 [Mycobacterium leprae Br4923]
gi|13093324|emb|CAC30420.1| conserved membrane protein [Mycobacterium leprae]
gi|219933356|emb|CAR71564.1| conserved membrane protein [Mycobacterium leprae Br4923]
Length=123
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/124 (62%), Positives = 89/124 (72%), Gaps = 9/124 (7%)
Query 1 MTDRSRE--------PADPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYL 52
MTD E ADPWK F+ VMAA L LEAIVVLLA+PV+ A GGL ++L +L
Sbjct 1 MTDSPGEHGPQKPLPSADPWKSFAGVMAAILFLEAIVVLLALPVLGA-SGGLTLSALSFL 59
Query 53 VGLAVLLILLTGLQRRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAE 112
+GLA LLI+L GLQR+ WAIWVNLG Q V++ G AVYP +GF+GVLFA LW LI Y RAE
Sbjct 60 IGLAGLLIVLVGLQRKAWAIWVNLGVQVVVLVGCAVYPVLGFVGVLFAGLWALIVYFRAE 119
Query 113 VRRR 116
V RR
Sbjct 120 VSRR 123
>gi|229493115|ref|ZP_04386907.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|229319846|gb|EEN85675.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=146
Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/109 (53%), Positives = 78/109 (72%), Gaps = 0/109 (0%)
Query 10 DPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAVLLILLTGLQRRP 69
DPWK F VMA TLILEAIVVLLA+PVV VGGGL AS G+++GLAVL+IL G+Q +P
Sbjct 29 DPWKSFRGVMAGTLILEAIVVLLALPVVAVVGGGLTAASAGFIIGLAVLMILGAGIQGKP 88
Query 70 WAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRRRD 118
WA+ N+ Q +L+ GF V+P + + + F +W + YL+ +++RR D
Sbjct 89 WAMGFNVALQVILLFGFFVHPSIAGVAITFGIVWGYLVYLQRDIKRRMD 137
>gi|226307285|ref|YP_002767245.1| hypothetical protein RER_37980 [Rhodococcus erythropolis PR4]
gi|226186402|dbj|BAH34506.1| conserved hypothetical membrane protein [Rhodococcus erythropolis
PR4]
Length=151
Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 57/109 (53%), Positives = 78/109 (72%), Gaps = 0/109 (0%)
Query 10 DPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAVLLILLTGLQRRP 69
DPWK F VMA TLILEAIVVLLA+PVV VGGGL AS G+++GLAVL+IL G+Q +P
Sbjct 34 DPWKSFRGVMAGTLILEAIVVLLALPVVAVVGGGLTAASAGFIIGLAVLMILGAGVQGKP 93
Query 70 WAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRRRD 118
WA+ N+ Q +L+ GF V+P + + + F +W + YL+ +++RR D
Sbjct 94 WAMGFNVALQVILLFGFFVHPSIAGVAITFGIVWGYLVYLQRDIKRRMD 142
>gi|226360452|ref|YP_002778230.1| hypothetical protein ROP_10380 [Rhodococcus opacus B4]
gi|226238937|dbj|BAH49285.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length=136
Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/121 (56%), Positives = 81/121 (67%), Gaps = 6/121 (4%)
Query 4 RSREP------ADPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAV 57
R+ EP DPWKGF V+A +LILEAIVVLLA+PVV VGGGL S YLVGLAV
Sbjct 7 RASEPEFGPPTKDPWKGFRGVVAGSLILEAIVVLLALPVVATVGGGLTWWSGTYLVGLAV 66
Query 58 LLILLTGLQRRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRRR 117
L+IL GLQ RPWA+ NL Q L+ GF V+ +G +GV+FA LW + Y R VR+R
Sbjct 67 LMILGAGLQGRPWAMKYNLLLQVGLLLGFFVHVSIGSVGVVFAILWGYLLYFRRNVRQRM 126
Query 118 D 118
+
Sbjct 127 E 127
>gi|111018326|ref|YP_701298.1| hypothetical protein RHA1_ro01316 [Rhodococcus jostii RHA1]
gi|110817856|gb|ABG93140.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=136
Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 64/109 (59%), Positives = 77/109 (71%), Gaps = 0/109 (0%)
Query 10 DPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAVLLILLTGLQRRP 69
DPWKGF V+A +LILEAIVVLLA+PVV VGGGL S YLVGLAVL+IL GLQ RP
Sbjct 19 DPWKGFRGVVAGSLILEAIVVLLALPVVATVGGGLTWWSGTYLVGLAVLMILGAGLQGRP 78
Query 70 WAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRRRD 118
WA+ NL Q L+ GF V+ +G +GV+FA LW + Y R VR+R +
Sbjct 79 WAMKYNLLLQVGLLLGFFVHVSIGSVGVVFAILWGYLLYFRRNVRQRME 127
>gi|333918791|ref|YP_004492372.1| hypothetical protein AS9A_1120 [Amycolicicoccus subflavus DQS3-9A1]
gi|333481012|gb|AEF39572.1| hypothetical protein AS9A_1120 [Amycolicicoccus subflavus DQS3-9A1]
Length=142
Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/117 (49%), Positives = 80/117 (69%), Gaps = 1/117 (0%)
Query 1 MTDRSREPA-DPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAVLL 59
MT+ PA DPWKG VMA TLIL+AIVV+LA+PVV VG G+ S Y++GLAVL+
Sbjct 1 MTEAVPPPAKDPWKGLRGVMAGTLILQAIVVMLALPVVWRVGDGITWFSGSYVIGLAVLM 60
Query 60 ILLTGLQRRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRR 116
IL GLQ RPWA+ ++ Q +++ F + +G +G++FAA+W I YLR +++ R
Sbjct 61 ILGAGLQGRPWALKFDIALQVLMIGTFVISVALGILGLIFAAVWGYILYLRNDLQSR 117
>gi|312140347|ref|YP_004007683.1| integral membrane protein [Rhodococcus equi 103S]
gi|325677076|ref|ZP_08156745.1| hypothetical protein HMPREF0724_14528 [Rhodococcus equi ATCC
33707]
gi|311889686|emb|CBH49003.1| putative integral membrane protein [Rhodococcus equi 103S]
gi|325552061|gb|EGD21754.1| hypothetical protein HMPREF0724_14528 [Rhodococcus equi ATCC
33707]
Length=133
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/108 (54%), Positives = 72/108 (67%), Gaps = 1/108 (0%)
Query 10 DPWKGFSAVMAATLILEAIVVLLAIPVVDAVGG-GLRPASLGYLVGLAVLLILLTGLQRR 68
DPWKGF VMA TLILEAIVVLLA+PVV V GL AS Y+ LA+L+IL G+Q +
Sbjct 15 DPWKGFRGVMAGTLILEAIVVLLALPVVAVVNSTGLTWASGLYICVLALLMILGAGVQGK 74
Query 69 PWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRR 116
PWA+ NL Q + GF + +G IGVLF A+W+ I YLR ++ R
Sbjct 75 PWAMKFNLTLQVATILGFFIDISLGVIGVLFGAVWLYIVYLRKDISER 122
>gi|343925347|ref|ZP_08764872.1| hypothetical protein GOALK_040_00510 [Gordonia alkanivorans NBRC
16433]
gi|343764786|dbj|GAA11798.1| hypothetical protein GOALK_040_00510 [Gordonia alkanivorans NBRC
16433]
Length=129
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/118 (41%), Positives = 76/118 (65%), Gaps = 0/118 (0%)
Query 1 MTDRSREPADPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAVLLI 60
MT + DPWKG VMA T+ILE IVV+LA P+V +GGGL S GYL+ L + +I
Sbjct 1 MTRYTPPANDPWKGLRGVMAGTMILEVIVVILAFPIVWRLGGGLTWVSGGYLILLVLAMI 60
Query 61 LLTGLQRRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRRRD 118
+ G+Q RP+A+ ++L Q ++AG + + +GV+F ++W+ I Y++ +V +R +
Sbjct 61 VAAGMQGRPYALKLDLALQVAVIAGGVFHWSIAAVGVVFGSVWLYIVYIKRDVEKRVE 118
>gi|326382836|ref|ZP_08204526.1| hypothetical protein SCNU_07853 [Gordonia neofelifaecis NRRL
B-59395]
gi|326198426|gb|EGD55610.1| hypothetical protein SCNU_07853 [Gordonia neofelifaecis NRRL
B-59395]
Length=139
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/110 (45%), Positives = 72/110 (66%), Gaps = 0/110 (0%)
Query 9 ADPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAVLLILLTGLQRR 68
DPWKGF VMA TLILE IVV LA PVV + GG+ AS YL + ++L+LL+G Q +
Sbjct 20 TDPWKGFRGVMAGTLILEVIVVALAFPVVAKLAGGVTWASGLYLGAVTLILLLLSGRQGK 79
Query 69 PWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRRRD 118
P A+ +NL Q ++AG + + +GV+F +W+ IAY++ +V +R +
Sbjct 80 PHALEINLVMQLFVIAGGFFHWSIAVVGVIFLCVWIYIAYIKRDVAKRIE 129
>gi|260578306|ref|ZP_05846222.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
gi|258603608|gb|EEW16869.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
Length=171
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/109 (44%), Positives = 67/109 (62%), Gaps = 2/109 (1%)
Query 10 DPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLG--YLVGLAVLLILLTGLQR 67
DP KG VMA T I+EAIV+LL + V+ V GG + Y++GL +I+ LQ+
Sbjct 38 DPLKGLRGVMAGTHIMEAIVILLVLTVITRVDGGASATTFNMVYVIGLGAAMIVAAFLQK 97
Query 68 RPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRR 116
WA W+N+ Q + VAGF V+P +G +GV+FA W I +LR+ + RR
Sbjct 98 VRWADWLNIALQVLAVAGFIVHPAMGAMGVIFALCWWYIYHLRSNLMRR 146
>gi|68535624|ref|YP_250329.1| hypothetical protein jk0552 [Corynebacterium jeikeium K411]
gi|68263223|emb|CAI36711.1| putative membrane protein [Corynebacterium jeikeium K411]
Length=171
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/109 (44%), Positives = 67/109 (62%), Gaps = 2/109 (1%)
Query 10 DPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLG--YLVGLAVLLILLTGLQR 67
DP KG VMA T I+EAIV+LL + V+ V GG + Y++GL +I+ LQ+
Sbjct 38 DPLKGLRGVMAGTHIMEAIVILLVLTVITRVDGGASATTFNMVYVIGLGAAMIVAAFLQK 97
Query 68 RPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRR 116
WA W+N+ Q + VAGF V+P +G +GV+FA W I +LR+ + RR
Sbjct 98 VRWADWLNIALQVLAVAGFIVHPAMGAMGVIFALCWWYIYHLRSNLMRR 146
>gi|300788554|ref|YP_003768845.1| hypothetical protein AMED_6717 [Amycolatopsis mediterranei U32]
gi|299798068|gb|ADJ48443.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340530159|gb|AEK45364.1| hypothetical protein RAM_34455 [Amycolatopsis mediterranei S699]
Length=132
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/119 (45%), Positives = 77/119 (65%), Gaps = 3/119 (2%)
Query 1 MTDRSREP---ADPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAV 57
MT + EP DP KGF VM+ TLI+EAI V LA+PVV+ +GGG+ + ++ +AV
Sbjct 1 MTSPAPEPPKPKDPMKGFRGVMSGTLIMEAITVALAVPVVNKLGGGISTGTGWTVIAVAV 60
Query 58 LLILLTGLQRRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRR 116
LLI+ G +RPWA+ + LG Q VL+A P + +GV+F A+W+ + +LR +V RR
Sbjct 61 LLIVTCGFVKRPWAVPLILGLQVVLIALVFWLPAIAVLGVIFLAVWLWLLWLRKDVARR 119
>gi|296394165|ref|YP_003659049.1| hypothetical protein Srot_1758 [Segniliparus rotundus DSM 44985]
gi|296181312|gb|ADG98218.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985]
Length=134
Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/124 (42%), Positives = 72/124 (59%), Gaps = 7/124 (5%)
Query 2 TDR-SREPADPWKGFSAVMAATLILEAIVVLLAIPVV----DAVGGGLRPASLGYLVGLA 56
TD + PADPWKGF V + LILE IVVLLAIPV D G P +++ A
Sbjct 10 TDHDASPPADPWKGFRGVCSGILILEMIVVLLAIPVAVNFSDIPGPSWLPTV--FVLCAA 67
Query 57 VLLILLTGLQRRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRR 116
LL +Q +PWA ++ G Q VLVAG+ ++P +G G++F +W L+ ++R VR+
Sbjct 68 ALLFWACAVQSKPWAFALDFGLQFVLVAGWLLHPAIGVTGLVFVVVWSLVWWMRRGVRKA 127
Query 117 RDYR 120
+ R
Sbjct 128 QGSR 131
>gi|317507071|ref|ZP_07964834.1| 30S ribosomal protein S3 [Segniliparus rugosus ATCC BAA-974]
gi|316254646|gb|EFV13953.1| 30S ribosomal protein S3 [Segniliparus rugosus ATCC BAA-974]
Length=129
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/126 (39%), Positives = 71/126 (57%), Gaps = 9/126 (7%)
Query 1 MTDRSREP-------ADPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRP--ASLGY 51
MT+ P DPWKGF V + LILE I VLL +PVV + P A +
Sbjct 1 MTEEEPNPDPAPAERPDPWKGFRGVCSGILILEMIAVLLGVPVVVNLSSFHGPGWAPTAF 60
Query 52 LVGLAVLLILLTGLQRRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRA 111
++ A LL +Q +PW ++LG Q VLVAG+ V+P +G G++FAA+W ++ ++R
Sbjct 61 VLCFAALLFWACAVQSKPWGFSLDLGLQAVLVAGWLVHPAIGVTGLIFAAVWAVVWWMRR 120
Query 112 EVRRRR 117
V+R +
Sbjct 121 AVQRAQ 126
>gi|54023317|ref|YP_117559.1| hypothetical protein nfa13500 [Nocardia farcinica IFM 10152]
gi|54014825|dbj|BAD56195.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=136
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/107 (52%), Positives = 71/107 (67%), Gaps = 0/107 (0%)
Query 12 WKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAVLLILLTGLQRRPWA 71
WKG VMA TL+LE+IVVLLA+PVV VGGG+ S YLV LA+ +IL GLQ R WA
Sbjct 16 WKGLRGVMAGTLVLESIVVLLALPVVADVGGGITWFSGSYLVILALAMILGAGLQGRSWA 75
Query 72 IWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRRRD 118
+ NLG Q +++ G ++ + IGV+F +W I LR EV+RR D
Sbjct 76 LAFNLGLQVLVLLGGFIHLSILVIGVVFVLVWAFILILRHEVKRRMD 122
>gi|262201992|ref|YP_003273200.1| hypothetical protein Gbro_2055 [Gordonia bronchialis DSM 43247]
gi|262085339|gb|ACY21307.1| hypothetical protein Gbro_2055 [Gordonia bronchialis DSM 43247]
Length=137
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/123 (40%), Positives = 71/123 (58%), Gaps = 7/123 (5%)
Query 1 MTDRSREPA-------DPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLV 53
M++ + EP DPWKG VMA TLILE IV++L P+V + GGL S YL
Sbjct 1 MSEGAVEPQRFTPPTNDPWKGLRGVMAGTLILEVIVMILTFPIVARIAGGLTWVSGIYLA 60
Query 54 GLAVLLILLTGLQRRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEV 113
+ V LIL G+Q R A+ ++L Q ++AG + + +G+LF +W+ I Y++ +V
Sbjct 61 AVTVALILAAGMQGRRHALTIDLALQFAVIAGGVFHWSIAVVGLLFMCVWIYIRYVKVDV 120
Query 114 RRR 116
RR
Sbjct 121 ERR 123
>gi|258651729|ref|YP_003200885.1| hypothetical protein Namu_1497 [Nakamurella multipartita DSM
44233]
gi|258554954|gb|ACV77896.1| hypothetical protein Namu_1497 [Nakamurella multipartita DSM
44233]
Length=142
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/114 (45%), Positives = 76/114 (67%), Gaps = 0/114 (0%)
Query 3 DRSREPADPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAVLLILL 62
+ +R A KG VM+ATL+LEAI VLLA+PV V GG+ PA + + LA LI+
Sbjct 14 ELARRQAAINKGLRGVMSATLVLEAIAVLLALPVAINVDGGVGPAGIAAICLLAAALIMC 73
Query 63 TGLQRRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRR 116
+ RRP+A+ V LG Q +++ G+++ P +G +G++FAA+W LI + RAE+ RR
Sbjct 74 CVIVRRPYAVAVILGLQALMIVGWSITPTLGVMGIVFAAVWALILWFRAELHRR 127
>gi|296139193|ref|YP_003646436.1| hypothetical protein Tpau_1470 [Tsukamurella paurometabola DSM
20162]
gi|296027327|gb|ADG78097.1| conserved hypothetical protein [Tsukamurella paurometabola DSM
20162]
Length=133
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/119 (37%), Positives = 71/119 (60%), Gaps = 3/119 (2%)
Query 1 MTDRSR---EPADPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAV 57
MT R P DPWK F +++ TLILE IV+LLA+PVV + G+ + Y++ LA
Sbjct 1 MTQPQRFTPPPKDPWKSFRGILSGTLILEMIVILLALPVVFKLSPGMTGLKVAYVLLLAA 60
Query 58 LLILLTGLQRRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRR 116
+ ++PWAI Q ++AG+ V+PG+G +G++FA +W I ++ +V++R
Sbjct 61 ACFAGCMVVKKPWAIPAFCALQVAVIAGWIVHPGIGGVGIVFAIVWGYIVFIERDVKKR 119
>gi|257055282|ref|YP_003133114.1| hypothetical protein Svir_12380 [Saccharomonospora viridis DSM
43017]
gi|256585154|gb|ACU96287.1| hypothetical protein Svir_12380 [Saccharomonospora viridis DSM
43017]
Length=149
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/108 (49%), Positives = 66/108 (62%), Gaps = 0/108 (0%)
Query 9 ADPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAVLLILLTGLQRR 68
DP KGF V A TL+LEAIVV LA+PVV +G GL + G+AV L++ TGL R
Sbjct 23 TDPMKGFRGVQAGTLVLEAIVVGLALPVVAQLGDGLTSLQGWTVSGIAVGLLVCTGLLRF 82
Query 69 PWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRR 116
PW+IWV L L+A P V IGV+F A+W + +LR +V RR
Sbjct 83 PWSIWVILALNVGLLAFVVTLPWVAVIGVMFLAVWGWLMWLRRDVARR 130
>gi|319949125|ref|ZP_08023217.1| hypothetical protein ES5_06942 [Dietzia cinnamea P4]
gi|319437197|gb|EFV92225.1| hypothetical protein ES5_06942 [Dietzia cinnamea P4]
Length=137
Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/115 (41%), Positives = 75/115 (66%), Gaps = 3/115 (2%)
Query 5 SREPA-DPWKGFSAVMAATLILEAIVVLLAIPVVDAV--GGGLRPASLGYLVGLAVLLIL 61
+ EP+ DPWKG +MA TL+LEAIV+ L + V+ + G +P + ++ LA+ +++
Sbjct 12 AHEPSVDPWKGLRGIMAGTLVLEAIVIGLVLTVIARLDDGAHFQPWKVWFVSLLAIAMLV 71
Query 62 LTGLQRRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRR 116
+GLQR+PWAI +NL + VAG+AV+ +G G+LFA +W I +LR ++ R
Sbjct 72 ASGLQRKPWAIPMNLTLAALAVAGWAVHWSMGVSGLLFATVWAYILFLRRDLAGR 126
>gi|256375308|ref|YP_003098968.1| hypothetical protein Amir_1167 [Actinosynnema mirum DSM 43827]
gi|255919611|gb|ACU35122.1| hypothetical protein Amir_1167 [Actinosynnema mirum DSM 43827]
Length=151
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/109 (42%), Positives = 69/109 (64%), Gaps = 4/109 (3%)
Query 10 DPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAVLLILL--TGLQR 67
DP K F +MA TLILEAIV LA+PVV +GGG+ + GYLV LA++L + L +
Sbjct 14 DPMKSFRGIMAGTLILEAIVTALALPVVANLGGGVSTGT-GYLV-LALILAFVGACALLK 71
Query 68 RPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRR 116
PW +W+ + V+VAG + +G +G++F+ +W + +LR +V +R
Sbjct 72 HPWVVWLIIALHVVMVAGIVLMTALGAVGIMFSLVWAYLLWLRHDVTKR 120
>gi|336325190|ref|YP_004605156.1| hypothetical protein CRES_0632 [Corynebacterium resistens DSM
45100]
gi|336101172|gb|AEI08992.1| putative membrane protein [Corynebacterium resistens DSM 45100]
Length=154
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/123 (42%), Positives = 73/123 (60%), Gaps = 5/123 (4%)
Query 6 REPA-DPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPA--SLGYLVGLAVLLILL 62
EPA DP KG VMA T ILEAIV+LL + VV + G ++ Y+ L V +I+
Sbjct 18 HEPATDPLKGLRGVMAGTHILEAIVILLGLTVVTRIHDGDHATVFNIVYVTALGVAMIIA 77
Query 63 TGLQRRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEV--RRRRDYR 120
LQ+ +A +N+G Q + +AGF V+P +G +G+LFAA+W I +L+ + R RR
Sbjct 78 AFLQKAKFADALNIGLQVLAIAGFIVHPSIGAMGLLFAAVWWYIYHLKKNLLERMRRGLL 137
Query 121 VSQ 123
SQ
Sbjct 138 PSQ 140
>gi|300780639|ref|ZP_07090494.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
33030]
gi|300533625|gb|EFK54685.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
33030]
Length=153
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/126 (38%), Positives = 77/126 (62%), Gaps = 10/126 (7%)
Query 6 REP-ADPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYL----VGLAVLLI 60
+EP DP KG S VM+ TLI+EAI + L + V+ + G + ++ +G A L+
Sbjct 26 QEPVKDPMKGLSGVMSGTLIMEAITIFLCLTVILKIQEGALWTTFNWVFVTVMGFAHLIA 85
Query 61 LLTGLQRRPWAIWVNLGAQ-PVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEV--RRRR 117
+QRRP A+W+NLG Q P++V GF ++ VG +G++FA +W L+ +R+++ R+RR
Sbjct 86 AF--VQRRPGALWLNLGLQVPLIVVGFFIHWSVGAVGIMFAIVWFLVVQMRSDILERQRR 143
Query 118 DYRVSQ 123
+Q
Sbjct 144 GLLTTQ 149
>gi|134097974|ref|YP_001103635.1| hypothetical protein SACE_1388 [Saccharopolyspora erythraea NRRL
2338]
gi|291008556|ref|ZP_06566529.1| hypothetical protein SeryN2_28888 [Saccharopolyspora erythraea
NRRL 2338]
gi|133910597|emb|CAM00710.1| hypothetical protein SACE_1388 [Saccharopolyspora erythraea NRRL
2338]
Length=177
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/107 (44%), Positives = 65/107 (61%), Gaps = 0/107 (0%)
Query 10 DPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAVLLILLTGLQRRP 69
DPWKG +MAATLILE IV LA+PVV GG+ A ++ L+VLL++ +QRR
Sbjct 50 DPWKGLRGIMAATLILEFIVFALALPVVWQFAGGVSSAGFAFVAVLSVLLLVAGFVQRRK 109
Query 70 WAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRR 116
W L Q LVA F V+P +G + ++F +W I +LR +V +R
Sbjct 110 WGFGFALALQVALVACFFVHPAIGLMALVFVVVWAYIVHLRRDVAKR 156
>gi|302528927|ref|ZP_07281269.1| predicted protein [Streptomyces sp. AA4]
gi|302437822|gb|EFL09638.1| predicted protein [Streptomyces sp. AA4]
Length=139
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/112 (43%), Positives = 70/112 (63%), Gaps = 1/112 (0%)
Query 6 REPA-DPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAVLLILLTG 64
+ PA DP KGF VMA TLI+EAI V LA+PVV +GGG+ + ++ LAV+LI+L G
Sbjct 13 KPPAKDPMKGFRGVMAGTLIMEAITVALALPVVAKLGGGITSFTGWTVIALAVVLIVLCG 72
Query 65 LQRRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRR 116
+ + WA+ V L Q ++A P + IG++F A ++ +LR +V RR
Sbjct 73 MLKHVWAVPVILLLQLAIIAVGITQPAIAIIGIIFLAAFLWFLWLRRDVARR 124
>gi|334564153|ref|ZP_08517144.1| hypothetical protein CbovD2_06221 [Corynebacterium bovis DSM
20582]
Length=169
Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/111 (46%), Positives = 72/111 (65%), Gaps = 2/111 (1%)
Query 9 ADPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGL--RPASLGYLVGLAVLLILLTGLQ 66
DP + VM+ L++EAIVVLLA+ VV V G P ++ Y+ L V+++L++GLQ
Sbjct 39 TDPLASGTWVMSGALVMEAIVVLLALTVVLRVDEGAYATPFNITYVAVLGVVMLLMSGLQ 98
Query 67 RRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRRR 117
+R WA VN+ Q + VAGF V+P +G GV+FAA WV + YLR +R R+
Sbjct 99 KRRWATPVNVILQVLAVAGFVVHPAIGIAGVIFAAAWVYVYYLRHTIRERQ 149
>gi|300859014|ref|YP_003783997.1| hypothetical protein cpfrc_01597 [Corynebacterium pseudotuberculosis
FRC41]
gi|300686468|gb|ADK29390.1| putative membrane protein [Corynebacterium pseudotuberculosis
FRC41]
gi|302206713|gb|ADL11055.1| Hypothetical protein CpC231_1593 [Corynebacterium pseudotuberculosis
C231]
gi|302331266|gb|ADL21460.1| Hypothetical protein Cp1002_1591 [Corynebacterium pseudotuberculosis
1002]
gi|308276955|gb|ADO26854.1| 7TM-receptor with intracellular phosphohydrolase domain [Corynebacterium
pseudotuberculosis I19]
gi|341825398|gb|AEK92919.1| Hypothetical protein CpPAT10_1593 [Corynebacterium pseudotuberculosis
PAT10]
Length=142
Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/114 (35%), Positives = 68/114 (60%), Gaps = 3/114 (2%)
Query 6 REPA-DPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASL--GYLVGLAVLLILL 62
REPA DP KG VMA T++++AI L + V+ V G+ + GY+ ++ +++L
Sbjct 18 REPAKDPMKGLRGVMAGTMMMQAISFYLVLTVILRVDNGIHWTTFNWGYVTAVSTAMLIL 77
Query 63 TGLQRRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRR 116
+ LQ++ WA+ N+G Q +AGF V+ +G + +++ A+W + YLR + R
Sbjct 78 SFLQKKRWALKANIGIQVFALAGFVVHISMGIMAIIYIAVWWYLLYLRKNLIER 131
>gi|237785944|ref|YP_002906649.1| hypothetical protein ckrop_1365 [Corynebacterium kroppenstedtii
DSM 44385]
gi|237758856|gb|ACR18106.1| putative membrane protein [Corynebacterium kroppenstedtii DSM
44385]
Length=162
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/109 (40%), Positives = 64/109 (59%), Gaps = 2/109 (1%)
Query 10 DPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGL--RPASLGYLVGLAVLLILLTGLQR 67
DP K VMA TLI+E I LL +PVV V G P ++ ++ V L++++ LQ
Sbjct 43 DPLKSLRGVMAGTLIMEFITFLLVLPVVARVDEGAYNTPFNIVSVIVFCVALLVMSFLQG 102
Query 68 RPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRR 116
+ WA+ V+L Q V + GF V+P +G +G++FA +W I YLR + R
Sbjct 103 KSWALGVDLLLQVVAIVGFIVHPAMGVMGIVFALVWAYIVYLRKNLIER 151
>gi|337291357|ref|YP_004630378.1| hypothetical protein CULC22_01749 [Corynebacterium ulcerans BR-AD22]
gi|334697407|gb|AEG82204.1| putative membrane protein [Corynebacterium ulcerans 809]
gi|334699663|gb|AEG84459.1| putative membrane protein [Corynebacterium ulcerans BR-AD22]
Length=142
Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/114 (34%), Positives = 66/114 (58%), Gaps = 3/114 (2%)
Query 6 REPA-DPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLG--YLVGLAVLLILL 62
EPA DP KG VMA T++++AI L + V+ V G+ + Y+ ++ +++L
Sbjct 18 HEPAKDPMKGLRGVMAGTMMMQAISFYLVLTVILRVDNGIHWTTFNWVYVTAVSTAMLIL 77
Query 63 TGLQRRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRR 116
+ LQ++ WA+ N+G Q +AGF V+ +G + V++ A+W + YLR + R
Sbjct 78 SFLQKKRWALKANIGIQVFALAGFVVHISMGIMAVIYIAVWWYLLYLRKNLIER 131
>gi|331695817|ref|YP_004332056.1| hypothetical protein Psed_1975 [Pseudonocardia dioxanivorans
CB1190]
gi|326950506|gb|AEA24203.1| hypothetical protein Psed_1975 [Pseudonocardia dioxanivorans
CB1190]
Length=136
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/104 (45%), Positives = 64/104 (62%), Gaps = 0/104 (0%)
Query 13 KGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAVLLILLTGLQRRPWAI 72
KG V AATLILEAIVVLLA+ V+ G G PA + ++ LA+ +I+ +GLQRRPW +
Sbjct 22 KGIRGVFAATLILEAIVVLLAMLVLPKFGDGATPAGVISMLALALAMIVGSGLQRRPWGL 81
Query 73 WVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRR 116
L Q + A P + IG++FAA+W + LR +V R+
Sbjct 82 AYALVLQVAVFACIVFVPALWVIGIVFAAVWGGLLLLRRDVARK 125
>gi|227548729|ref|ZP_03978778.1| conserved hypothetical protein [Corynebacterium lipophiloflavum
DSM 44291]
gi|227079196|gb|EEI17159.1| conserved hypothetical protein [Corynebacterium lipophiloflavum
DSM 44291]
Length=148
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/123 (37%), Positives = 70/123 (57%), Gaps = 5/123 (4%)
Query 6 REPA-DPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLG--YLVGLAVLLILL 62
R PA DP KG + V++ TLI+E++ V L + VV V G + Y+ + + ++
Sbjct 18 RAPAKDPLKGLNGVLSGTLIMESLTVFLILLVVLKVDDGAHWTTFNWVYITVIGLAHAVM 77
Query 63 TGLQRRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEV--RRRRDYR 120
+QR P A+W+NL Q LV GF V+ V +GV+FA +W + LRA++ R R +
Sbjct 78 AFVQRLPGALWINLALQVPLVFGFFVHWSVTAVGVMFAVVWFFVIRLRADIIARMERGFL 137
Query 121 VSQ 123
V+Q
Sbjct 138 VTQ 140
>gi|225021676|ref|ZP_03710868.1| hypothetical protein CORMATOL_01704 [Corynebacterium matruchotii
ATCC 33806]
gi|224945667|gb|EEG26876.1| hypothetical protein CORMATOL_01704 [Corynebacterium matruchotii
ATCC 33806]
Length=135
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/118 (37%), Positives = 67/118 (57%), Gaps = 4/118 (3%)
Query 10 DPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGY--LVGLAVLLILLTGLQR 67
DP KG VMA + +EA LA+ V+ V GG ++ + + LA L+++++ Q
Sbjct 16 DPLKGLRGVMAGAMGMEATTFYLALTVILRVDGGAYWTTVNWVSITVLATLMLVMSFFQG 75
Query 68 RPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEV--RRRRDYRVSQ 123
+ WA+ VN+G Q V + GF ++P VG + VLFA +W I YLR + R +R +Q
Sbjct 76 KSWAVPVNIGLQVVALFGFIIHPAVGVVAVLFAVVWWYILYLRRNLLERMKRGLLTTQ 133
>gi|227488337|ref|ZP_03918653.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227091699|gb|EEI27011.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51867]
Length=136
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/121 (34%), Positives = 71/121 (59%), Gaps = 3/121 (2%)
Query 6 REP-ADPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAVLLILLTG 64
+EP DP KG VM++ LI EAI + L + V+ G +PA++ ++ +AV ++
Sbjct 14 QEPVKDPIKGLRGVMSSVLITEAITLGLVLTVISKFGDLWQPANIWFVSLVAVAHVVAAF 73
Query 65 LQRRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEV--RRRRDYRVS 122
LQR W+IW+N+ Q V + GF ++ +G + ++F LW+ + YLR + R++R +
Sbjct 74 LQRFSWSIWLNIALQVVALGGFFIHWSMGAVVIMFILLWIFVFYLRNVIIERKKRGLLTT 133
Query 123 Q 123
Q
Sbjct 134 Q 134
>gi|213966156|ref|ZP_03394342.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
gi|213951171|gb|EEB62567.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
Length=171
Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/116 (37%), Positives = 66/116 (57%), Gaps = 3/116 (2%)
Query 6 REPA-DPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGL--RPASLGYLVGLAVLLILL 62
+PA DP KG VMA TLI++AI VLL + VV + G + S+ Y+ L + LI +
Sbjct 47 HDPAKDPLKGLRGVMAGTLIMQAISVLLGLTVVTRIPDGQINQTFSVTYITILGLALIAM 106
Query 63 TGLQRRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEVRRRRD 118
LQ++PWA+ N+ Q V + +G +G++FA +W I +LR + +R +
Sbjct 107 AFLQKQPWALKANIVLQVFGVLAIFTHVSMGVVGIVFALVWAYILHLRKNLIQRME 162
>gi|227542950|ref|ZP_03972999.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227181172|gb|EEI62144.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51866]
Length=136
Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/121 (34%), Positives = 70/121 (58%), Gaps = 3/121 (2%)
Query 6 REP-ADPWKGFSAVMAATLILEAIVVLLAIPVVDAVGGGLRPASLGYLVGLAVLLILLTG 64
+EP DP KG VM++ LI EAI + L + V+ +PA++ ++ +AV ++
Sbjct 14 QEPVKDPIKGLRGVMSSVLITEAITLGLVLTVISKFSDLWQPANIWFVSLVAVAHVVAAF 73
Query 65 LQRRPWAIWVNLGAQPVLVAGFAVYPGVGFIGVLFAALWVLIAYLRAEV--RRRRDYRVS 122
LQR W+IW+N+ Q V + GF ++ +G + ++F LW+ + YLR + R++R +
Sbjct 74 LQRFSWSIWLNIALQVVALGGFFIHWSMGAVVIMFILLWIFVFYLRNVIIERKKRGLLTT 133
Query 123 Q 123
Q
Sbjct 134 Q 134
Lambda K H
0.329 0.144 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131390282924
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40