BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2450c
Length=172
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609587|ref|NP_216966.1| resuscitation-promoting factor RpfE... 335 2e-90
gi|15841974|ref|NP_337011.1| hypothetical protein MT2526 [Mycoba... 334 3e-90
gi|289553758|ref|ZP_06442968.1| resuscitation-promoting factor r... 334 3e-90
gi|31793631|ref|NP_856124.1| resuscitation-promoting factor RpfE... 333 4e-90
gi|289746233|ref|ZP_06505611.1| resuscitation-promoting factor r... 332 1e-89
gi|289758583|ref|ZP_06517961.1| resuscitation-promoting factor r... 331 2e-89
gi|326904065|gb|EGE50998.1| resuscitation-promoting factor rpfE ... 300 4e-80
gi|224990827|ref|YP_002645514.1| putative resuscitation-promotin... 221 3e-56
gi|240170924|ref|ZP_04749583.1| hypothetical protein MkanA1_1655... 198 3e-49
gi|308232136|ref|ZP_07415058.2| resuscitation-promoting factor r... 169 1e-40
gi|118618984|ref|YP_907316.1| resuscitation-promoting factor Rpf... 155 2e-36
gi|336458191|gb|EGO37172.1| transglycosylase-like protein [Mycob... 154 6e-36
gi|333990096|ref|YP_004522710.1| resuscitation-promoting factor-... 140 6e-32
gi|41408371|ref|NP_961207.1| hypothetical protein MAP2273c [Myco... 139 2e-31
gi|296170483|ref|ZP_06852070.1| possible resuscitation-promoting... 136 9e-31
gi|342857850|ref|ZP_08714506.1| resuscitation-promoting factor r... 134 4e-30
gi|108800530|ref|YP_640727.1| transglycosylase-like protein [Myc... 133 8e-30
gi|169628687|ref|YP_001702336.1| hypothetical protein MAB_1597 [... 131 3e-29
gi|118470954|ref|YP_888906.1| resuscitation-promoting factor [My... 131 4e-29
gi|120404916|ref|YP_954745.1| transglycosylase domain-containing... 130 5e-29
gi|183983756|ref|YP_001852047.1| resuscitation-promoting factor ... 130 7e-29
gi|262203254|ref|YP_003274462.1| transglycosylase [Gordonia bron... 129 1e-28
gi|315443664|ref|YP_004076543.1| transglycosylase-like protein [... 128 3e-28
gi|145223206|ref|YP_001133884.1| transglycosylase domain-contain... 128 4e-28
gi|326383331|ref|ZP_08205019.1| transglycosylase domain-containi... 125 3e-27
gi|118466908|ref|YP_880949.1| secreted protein [Mycobacterium av... 124 3e-27
gi|256379283|ref|YP_003102943.1| transglycosylase domain-contain... 124 4e-27
gi|229490962|ref|ZP_04384795.1| secreted protein [Rhodococcus er... 124 4e-27
gi|226305719|ref|YP_002765679.1| resuscitation-promoting factor ... 124 4e-27
gi|54023902|ref|YP_118144.1| hypothetical protein nfa19340 [Noca... 124 5e-27
gi|145223207|ref|YP_001133885.1| transglycosylase domain-contain... 124 5e-27
gi|54026495|ref|YP_120737.1| hypothetical protein nfa45220 [Noca... 124 6e-27
gi|296140721|ref|YP_003647964.1| transglycosylase domain-contain... 124 6e-27
gi|120404915|ref|YP_954744.1| transglycosylase domain-containing... 123 9e-27
gi|254821845|ref|ZP_05226846.1| hypothetical protein MintA_18067... 123 1e-26
gi|256374622|ref|YP_003098282.1| transglycosylase domain-contain... 123 1e-26
gi|300790325|ref|YP_003770616.1| hypothetical protein AMED_8518 ... 122 2e-26
gi|118469017|ref|YP_888904.1| hypothetical protein MSMEG_4640 [M... 122 2e-26
gi|111023353|ref|YP_706325.1| hypothetical protein RHA1_ro06390 ... 120 6e-26
gi|226365860|ref|YP_002783643.1| resuscitation-promoting factor ... 120 6e-26
gi|343924791|ref|ZP_08764330.1| putative resuscitation-promoting... 120 8e-26
gi|257057377|ref|YP_003135209.1| transglycosylase family protein... 119 2e-25
gi|108800529|ref|YP_640726.1| transglycosylase-like protein [Myc... 119 2e-25
gi|312140603|ref|YP_004007939.1| resuscitation-promoting factor ... 115 2e-24
gi|302530572|ref|ZP_07282914.1| predicted protein [Streptomyces ... 114 4e-24
gi|312139409|ref|YP_004006745.1| transglycosylase [Rhodococcus e... 113 8e-24
gi|108799874|ref|YP_640071.1| transglycosylase-like protein [Myc... 113 9e-24
gi|126437075|ref|YP_001072766.1| transglycosylase domain-contain... 113 1e-23
gi|312141114|ref|YP_004008450.1| resuscitation-promoting factor ... 113 1e-23
gi|119868984|ref|YP_938936.1| transglycosylase domain-containing... 113 1e-23
>gi|15609587|ref|NP_216966.1| resuscitation-promoting factor RpfE [Mycobacterium tuberculosis
H37Rv]
gi|2791490|emb|CAA16027.1| PROBABLE RESUSCITATION-PROMOTING FACTOR RPFE [Mycobacterium tuberculosis
H37Rv]
Length=172
Score = 335 bits (859), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 171/172 (99%), Positives = 172/172 (100%), Gaps = 0/172 (0%)
Query 1 LKNARTTLIAAAIAGTLVTTSPAGIANADDAGLDPNAAAGPDAVGFDPNLPPAPDAAPVD 60
+KNARTTLIAAAIAGTLVTTSPAGIANADDAGLDPNAAAGPDAVGFDPNLPPAPDAAPVD
Sbjct 1 MKNARTTLIAAAIAGTLVTTSPAGIANADDAGLDPNAAAGPDAVGFDPNLPPAPDAAPVD 60
Query 61 TPPAPEDAGFDPNLPPPLAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNG 120
TPPAPEDAGFDPNLPPPLAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNG
Sbjct 61 TPPAPEDAGFDPNLPPPLAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNG 120
Query 121 YYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGRRG 172
YYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGRRG
Sbjct 121 YYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGRRG 172
>gi|15841974|ref|NP_337011.1| hypothetical protein MT2526 [Mycobacterium tuberculosis CDC1551]
gi|148823651|ref|YP_001288405.1| resuscitation-promoting factor rpfE [Mycobacterium tuberculosis
F11]
gi|167969775|ref|ZP_02552052.1| resuscitation-promoting factor rpfE [Mycobacterium tuberculosis
H37Ra]
16 more sequence titles
Length=188
Score = 334 bits (856), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 171/172 (99%), Positives = 172/172 (100%), Gaps = 0/172 (0%)
Query 1 LKNARTTLIAAAIAGTLVTTSPAGIANADDAGLDPNAAAGPDAVGFDPNLPPAPDAAPVD 60
LKNARTTLIAAAIAGTLVTTSPAGIANADDAGLDPNAAAGPDAVGFDPNLPPAPDAAPVD
Sbjct 17 LKNARTTLIAAAIAGTLVTTSPAGIANADDAGLDPNAAAGPDAVGFDPNLPPAPDAAPVD 76
Query 61 TPPAPEDAGFDPNLPPPLAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNG 120
TPPAPEDAGFDPNLPPPLAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNG
Sbjct 77 TPPAPEDAGFDPNLPPPLAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNG 136
Query 121 YYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGRRG 172
YYGGL+FTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGRRG
Sbjct 137 YYGGLQFTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGRRG 188
>gi|289553758|ref|ZP_06442968.1| resuscitation-promoting factor rpfE [Mycobacterium tuberculosis
KZN 605]
gi|289438390|gb|EFD20883.1| resuscitation-promoting factor rpfE [Mycobacterium tuberculosis
KZN 605]
Length=186
Score = 334 bits (856), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 171/172 (99%), Positives = 172/172 (100%), Gaps = 0/172 (0%)
Query 1 LKNARTTLIAAAIAGTLVTTSPAGIANADDAGLDPNAAAGPDAVGFDPNLPPAPDAAPVD 60
LKNARTTLIAAAIAGTLVTTSPAGIANADDAGLDPNAAAGPDAVGFDPNLPPAPDAAPVD
Sbjct 15 LKNARTTLIAAAIAGTLVTTSPAGIANADDAGLDPNAAAGPDAVGFDPNLPPAPDAAPVD 74
Query 61 TPPAPEDAGFDPNLPPPLAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNG 120
TPPAPEDAGFDPNLPPPLAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNG
Sbjct 75 TPPAPEDAGFDPNLPPPLAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNG 134
Query 121 YYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGRRG 172
YYGGL+FTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGRRG
Sbjct 135 YYGGLQFTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGRRG 186
>gi|31793631|ref|NP_856124.1| resuscitation-promoting factor RpfE [Mycobacterium bovis AF2122/97]
gi|121638333|ref|YP_978557.1| putative resuscitation-promoting factor rpfE [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|148662285|ref|YP_001283808.1| putative resuscitation-promoting factor RpfE [Mycobacterium tuberculosis
H37Ra]
27 more sequence titles
Length=172
Score = 333 bits (855), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 170/172 (99%), Positives = 172/172 (100%), Gaps = 0/172 (0%)
Query 1 LKNARTTLIAAAIAGTLVTTSPAGIANADDAGLDPNAAAGPDAVGFDPNLPPAPDAAPVD 60
+KNARTTLIAAAIAGTLVTTSPAGIANADDAGLDPNAAAGPDAVGFDPNLPPAPDAAPVD
Sbjct 1 MKNARTTLIAAAIAGTLVTTSPAGIANADDAGLDPNAAAGPDAVGFDPNLPPAPDAAPVD 60
Query 61 TPPAPEDAGFDPNLPPPLAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNG 120
TPPAPEDAGFDPNLPPPLAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNG
Sbjct 61 TPPAPEDAGFDPNLPPPLAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNG 120
Query 121 YYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGRRG 172
YYGGL+FTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGRRG
Sbjct 121 YYGGLQFTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGRRG 172
>gi|289746233|ref|ZP_06505611.1| resuscitation-promoting factor rpfE [Mycobacterium tuberculosis
02_1987]
gi|294994440|ref|ZP_06800131.1| resuscitation-promoting factor rpfE [Mycobacterium tuberculosis
210]
gi|289686761|gb|EFD54249.1| resuscitation-promoting factor rpfE [Mycobacterium tuberculosis
02_1987]
Length=188
Score = 332 bits (850), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 170/172 (99%), Positives = 171/172 (99%), Gaps = 0/172 (0%)
Query 1 LKNARTTLIAAAIAGTLVTTSPAGIANADDAGLDPNAAAGPDAVGFDPNLPPAPDAAPVD 60
LKNARTTLIAAAIAGTLVT SPAGIANADDAGLDPNAAAGPDAVGFDPNLPPAPDAAPVD
Sbjct 17 LKNARTTLIAAAIAGTLVTRSPAGIANADDAGLDPNAAAGPDAVGFDPNLPPAPDAAPVD 76
Query 61 TPPAPEDAGFDPNLPPPLAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNG 120
TPPAPEDAGFDPNLPPPLAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNG
Sbjct 77 TPPAPEDAGFDPNLPPPLAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNG 136
Query 121 YYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGRRG 172
YYGGL+FTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGRRG
Sbjct 137 YYGGLQFTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGRRG 188
>gi|289758583|ref|ZP_06517961.1| resuscitation-promoting factor rpfE [Mycobacterium tuberculosis
T85]
gi|289714147|gb|EFD78159.1| resuscitation-promoting factor rpfE [Mycobacterium tuberculosis
T85]
gi|339298960|gb|AEJ51070.1| resuscitation-promoting factor rpfE [Mycobacterium tuberculosis
CCDC5180]
Length=172
Score = 331 bits (848), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 169/172 (99%), Positives = 171/172 (99%), Gaps = 0/172 (0%)
Query 1 LKNARTTLIAAAIAGTLVTTSPAGIANADDAGLDPNAAAGPDAVGFDPNLPPAPDAAPVD 60
+KNARTTLIAAAIAGTLVT SPAGIANADDAGLDPNAAAGPDAVGFDPNLPPAPDAAPVD
Sbjct 1 MKNARTTLIAAAIAGTLVTRSPAGIANADDAGLDPNAAAGPDAVGFDPNLPPAPDAAPVD 60
Query 61 TPPAPEDAGFDPNLPPPLAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNG 120
TPPAPEDAGFDPNLPPPLAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNG
Sbjct 61 TPPAPEDAGFDPNLPPPLAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNG 120
Query 121 YYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGRRG 172
YYGGL+FTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGRRG
Sbjct 121 YYGGLQFTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGRRG 172
>gi|326904065|gb|EGE50998.1| resuscitation-promoting factor rpfE [Mycobacterium tuberculosis
W-148]
Length=172
Score = 300 bits (769), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 167/172 (98%), Positives = 169/172 (99%), Gaps = 0/172 (0%)
Query 1 LKNARTTLIAAAIAGTLVTTSPAGIANADDAGLDPNAAAGPDAVGFDPNLPPAPDAAPVD 60
+KNARTTLIAAAIAGTLVT SPAGIANADDAGLDPNAAAGPDAVGFDPNLPPAPDAAPVD
Sbjct 1 MKNARTTLIAAAIAGTLVTRSPAGIANADDAGLDPNAAAGPDAVGFDPNLPPAPDAAPVD 60
Query 61 TPPAPEDAGFDPNLPPPLAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNG 120
TPPAPEDAGFDPNLPPPLAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNG
Sbjct 61 TPPAPEDAGFDPNLPPPLAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNG 120
Query 121 YYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGRRG 172
YYGGL+FTAGTWRANGGS SA NASREEQIRVAENVLRSQGIRAWPVCGRRG
Sbjct 121 YYGGLQFTAGTWRANGGSRSADNASREEQIRVAENVLRSQGIRAWPVCGRRG 172
>gi|224990827|ref|YP_002645514.1| putative resuscitation-promoting factor [Mycobacterium bovis
BCG str. Tokyo 172]
gi|224773940|dbj|BAH26746.1| putative resuscitation-promoting factor [Mycobacterium bovis
BCG str. Tokyo 172]
Length=198
Score = 221 bits (563), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 114/116 (99%), Positives = 115/116 (99%), Gaps = 0/116 (0%)
Query 1 LKNARTTLIAAAIAGTLVTTSPAGIANADDAGLDPNAAAGPDAVGFDPNLPPAPDAAPVD 60
+KNARTTLIAAAIAGTLVTTSPAGIANADDAGLDPNAAAGPDAVGFDPNLPPAPDAAPVD
Sbjct 1 MKNARTTLIAAAIAGTLVTTSPAGIANADDAGLDPNAAAGPDAVGFDPNLPPAPDAAPVD 60
Query 61 TPPAPEDAGFDPNLPPPLAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSIN 116
TPPAPEDAGFDPNLPPPLAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSI
Sbjct 61 TPPAPEDAGFDPNLPPPLAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSIT 116
>gi|240170924|ref|ZP_04749583.1| hypothetical protein MkanA1_16554 [Mycobacterium kansasii ATCC
12478]
Length=206
Score = 198 bits (503), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 132/208 (64%), Positives = 142/208 (69%), Gaps = 39/208 (18%)
Query 1 LKNARTTLIAAAIAGTLVTTSPAGIANADDAGLDPNAAAGPDAVGFDPNLPPAPDA---- 56
LKN R TLI AAI GTLVT P+G A AD+ GLDPNAA GPDAV FDPN+PPAPDA
Sbjct 2 LKNVRKTLIVAAITGTLVTV-PSGTAAADE-GLDPNAAPGPDAVDFDPNVPPAPDAFASG 59
Query 57 APVDTPPAPEDAGFDPNLPPPLAPDFLSPPAE---------------------------- 88
AP D PAPE GFDPN+PPP APD + P +
Sbjct 60 AP-DDAPAPELVGFDPNVPPPAAPDAVIAPVDLPDGPAPDAAPPAPEPVDFDPNMAPPPA 118
Query 89 ----EAPPVPVAYSVNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANA 144
PP P AYSVNWDAIAQCESGGNW+INTGNGY GGL+FT+ TW ANGGSGSAA+A
Sbjct 119 PDVPPPPPAPRAYSVNWDAIAQCESGGNWAINTGNGYSGGLQFTSSTWHANGGSGSAASA 178
Query 145 SREEQIRVAENVLRSQGIRAWPVCGRRG 172
SREEQIRVAENVL SQGI AWPVCGRRG
Sbjct 179 SREEQIRVAENVLHSQGIGAWPVCGRRG 206
>gi|308232136|ref|ZP_07415058.2| resuscitation-promoting factor rpfE [Mycobacterium tuberculosis
SUMu001]
gi|308371018|ref|ZP_07423569.2| resuscitation-promoting factor rpfE [Mycobacterium tuberculosis
SUMu003]
gi|308372237|ref|ZP_07427928.2| resuscitation-promoting factor rpfE [Mycobacterium tuberculosis
SUMu004]
15 more sequence titles
Length=95
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/95 (98%), Positives = 95/95 (100%), Gaps = 0/95 (0%)
Query 78 LAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGG 137
+APDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNGYYGGL+FTAGTWRANGG
Sbjct 1 MAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNGYYGGLQFTAGTWRANGG 60
Query 138 SGSAANASREEQIRVAENVLRSQGIRAWPVCGRRG 172
SGSAANASREEQIRVAENVLRSQGIRAWPVCGRRG
Sbjct 61 SGSAANASREEQIRVAENVLRSQGIRAWPVCGRRG 95
>gi|118618984|ref|YP_907316.1| resuscitation-promoting factor RpfE [Mycobacterium ulcerans Agy99]
gi|118571094|gb|ABL05845.1| resuscitation-promoting factor RpfE [Mycobacterium ulcerans Agy99]
Length=214
Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 119/220 (55%), Positives = 127/220 (58%), Gaps = 54/220 (24%)
Query 1 LKNARTTLIAAAIAGTLVTTSPAGIANADDAGLDPNAAAGPDAVGFDPNLPPAPDA---- 56
+KN R TLI AAI T VT A ANADD GLDPNA G D GFDPNLP AP A
Sbjct 1 MKNVRKTLIVAAITETFVTVPTAATANADD-GLDPNAV-GADTTGFDPNLPAAPGAFEPP 58
Query 57 ---------------------------APVDTP-----------------PAPEDAGFDP 72
APVD P PAPED P
Sbjct 59 APQDAPPAPELADADPDLPPPAPDAMIAPVDMPDGPAPEDAPPAPDAFAPPAPEDV---P 115
Query 73 NLPPPLAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTW 132
P P+A + +P P V Y+VNWDAIAQCE GGNW INTGNGY GGL+FTA TW
Sbjct 116 PAPEPVAFEPPAPDVAPPPAPKV-YTVNWDAIAQCEPGGNWGINTGNGYSGGLQFTASTW 174
Query 133 RANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGRRG 172
RA+GG+GSAA ASREEQIRVAENVLRSQGI AWPVCGRRG
Sbjct 175 RASGGAGSAAGASREEQIRVAENVLRSQGIGAWPVCGRRG 214
>gi|336458191|gb|EGO37172.1| transglycosylase-like protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=150
Score = 154 bits (388), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 100/172 (59%), Positives = 109/172 (64%), Gaps = 22/172 (12%)
Query 1 LKNARTTLIAAAIAGTLVTTSPAGIANADDAGLDPNAAAGPDAVGFDPNLPPAPDAAPVD 60
++N R TLI AA+ GTLVT P+ A+AD + VGFDPN+P A A
Sbjct 1 MRNVRKTLILAAVTGTLVTI-PSATAHAD-----------AEQVGFDPNVPAAGPAPDAP 48
Query 61 TPPAPEDAGFDPNLPPPLAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNG 120
PPAP P PP P AYSVNWDAIAQCESGGNW INTGNG
Sbjct 49 PPPAPPAP----------DAPPAPGPDVPPPPAPKAYSVNWDAIAQCESGGNWGINTGNG 98
Query 121 YYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGRRG 172
Y GGL+FT+ TW ANGGSGS A ASREEQIRVAENVL SQGI AWPVCGRRG
Sbjct 99 YAGGLQFTSSTWHANGGSGSPAGASREEQIRVAENVLHSQGIGAWPVCGRRG 150
>gi|333990096|ref|YP_004522710.1| resuscitation-promoting factor-like protein [Mycobacterium sp.
JDM601]
gi|333486064|gb|AEF35456.1| resuscitation-promoting factor-like protein [Mycobacterium sp.
JDM601]
Length=108
Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 67/75 (90%), Positives = 68/75 (91%), Gaps = 0/75 (0%)
Query 98 SVNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVL 157
SVNWDAIA CESGGNWSINTGNGYYGGL+F AGTWRANGGSG NASR EQIRVAENVL
Sbjct 34 SVNWDAIAACESGGNWSINTGNGYYGGLQFNAGTWRANGGSGMPHNASRSEQIRVAENVL 93
Query 158 RSQGIRAWPVCGRRG 172
RSQGI AWPVCGRRG
Sbjct 94 RSQGIGAWPVCGRRG 108
>gi|41408371|ref|NP_961207.1| hypothetical protein MAP2273c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41396727|gb|AAS04590.1| hypothetical protein MAP_2273c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=216
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/76 (87%), Positives = 68/76 (90%), Gaps = 0/76 (0%)
Query 97 YSVNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAENV 156
YSVNWDAIAQCESGGNW INTGNGY GGL+FT+ TW ANGGSGS A ASREEQIRVAENV
Sbjct 141 YSVNWDAIAQCESGGNWGINTGNGYAGGLQFTSSTWHANGGSGSPAGASREEQIRVAENV 200
Query 157 LRSQGIRAWPVCGRRG 172
L SQGI AWPVCGRRG
Sbjct 201 LHSQGIGAWPVCGRRG 216
>gi|296170483|ref|ZP_06852070.1| possible resuscitation-promoting factor [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295894835|gb|EFG74557.1| possible resuscitation-promoting factor [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=79
Score = 136 bits (343), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 67/77 (88%), Positives = 69/77 (90%), Gaps = 0/77 (0%)
Query 96 AYSVNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAEN 155
AYSVNWDAIAQCESGGNWSINTGNG+ GGL+FT TW ANGGSGS A ASREEQIRVAEN
Sbjct 3 AYSVNWDAIAQCESGGNWSINTGNGFSGGLQFTPSTWHANGGSGSPAGASREEQIRVAEN 62
Query 156 VLRSQGIRAWPVCGRRG 172
VL SQGI AWPVCGRRG
Sbjct 63 VLHSQGIGAWPVCGRRG 79
>gi|342857850|ref|ZP_08714506.1| resuscitation-promoting factor rpfE [Mycobacterium colombiense
CECT 3035]
gi|342135183|gb|EGT88349.1| resuscitation-promoting factor rpfE [Mycobacterium colombiense
CECT 3035]
Length=168
Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 104/172 (61%), Positives = 113/172 (66%), Gaps = 18/172 (10%)
Query 1 LKNARTTLIAAAIAGTLVTTSPAGIANADDAGLDPNAAAGPDAVGFDPNLPPAPDAAPVD 60
LKN R TLI AA+ GTLVT P+ A+AD P+AVGFDPN P A A
Sbjct 15 LKNVRKTLILAAVTGTLVTI-PSATAHAD-----------PEAVGFDPNAPAAGPAPDAP 62
Query 61 TPPAPEDAGFDPNLPPPLAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNG 120
PPAP+ PP PD PPA A YSVNWDAIAQCESGGNW I+TGNG
Sbjct 63 PPPAPDAPPPPAPDAPPPGPDVPPPPAHRA------YSVNWDAIAQCESGGNWGISTGNG 116
Query 121 YYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGRRG 172
+ GGL+FT TW ANGGSGS + ASREEQIRVAENVL SQGI AWPVCGRRG
Sbjct 117 FSGGLQFTPSTWHANGGSGSPSGASREEQIRVAENVLHSQGIGAWPVCGRRG 168
>gi|108800530|ref|YP_640727.1| transglycosylase-like protein [Mycobacterium sp. MCS]
gi|119869669|ref|YP_939621.1| transglycosylase domain-containing protein [Mycobacterium sp.
KMS]
gi|126436146|ref|YP_001071837.1| transglycosylase domain-containing protein [Mycobacterium sp.
JLS]
gi|108770949|gb|ABG09671.1| Transglycosylase-like protein [Mycobacterium sp. MCS]
gi|119695758|gb|ABL92831.1| Transglycosylase domain protein [Mycobacterium sp. KMS]
gi|126235946|gb|ABN99346.1| Transglycosylase domain protein [Mycobacterium sp. JLS]
Length=118
Score = 133 bits (335), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 62/74 (84%), Positives = 67/74 (91%), Gaps = 0/74 (0%)
Query 99 VNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVLR 158
VNWDA+A CESGGNWSINTGNGYYGGL+FT GTW++NGGSGS NASREEQIRVAENVL+
Sbjct 45 VNWDAVAACESGGNWSINTGNGYYGGLQFTMGTWQSNGGSGSPHNASREEQIRVAENVLQ 104
Query 159 SQGIRAWPVCGRRG 172
SQGI AWP CG RG
Sbjct 105 SQGIGAWPTCGGRG 118
>gi|169628687|ref|YP_001702336.1| hypothetical protein MAB_1597 [Mycobacterium abscessus ATCC 19977]
gi|169240654|emb|CAM61682.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=110
Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/92 (74%), Positives = 72/92 (79%), Gaps = 5/92 (5%)
Query 86 PAEEAPPVPVAYS-----VNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGS 140
PA A P+ +A + VNWDAIA CESGGNW INTGNGYYGGL+F GTWRANGGSGS
Sbjct 19 PALVAAPMALAGTASADPVNWDAIAACESGGNWGINTGNGYYGGLQFNLGTWRANGGSGS 78
Query 141 AANASREEQIRVAENVLRSQGIRAWPVCGRRG 172
ASREEQIRVAENVL QGI AWPVCGRRG
Sbjct 79 PHLASREEQIRVAENVLARQGIGAWPVCGRRG 110
>gi|118470954|ref|YP_888906.1| resuscitation-promoting factor [Mycobacterium smegmatis str.
MC2 155]
gi|118172241|gb|ABK73137.1| resuscitation-promoting factor [Mycobacterium smegmatis str.
MC2 155]
Length=107
Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/75 (80%), Positives = 66/75 (88%), Gaps = 0/75 (0%)
Query 98 SVNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVL 157
SVNWDAIA CESGGNWSINTGNGYYGGL+F GTWR++GG+G ASR EQIRVAENVL
Sbjct 33 SVNWDAIASCESGGNWSINTGNGYYGGLQFNLGTWRSHGGAGMPHQASRSEQIRVAENVL 92
Query 158 RSQGIRAWPVCGRRG 172
R+QGI AWPVCG+RG
Sbjct 93 RTQGIGAWPVCGKRG 107
>gi|120404916|ref|YP_954745.1| transglycosylase domain-containing protein [Mycobacterium vanbaalenii
PYR-1]
gi|119957734|gb|ABM14739.1| Transglycosylase domain protein [Mycobacterium vanbaalenii PYR-1]
Length=111
Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 60/75 (80%), Positives = 67/75 (90%), Gaps = 0/75 (0%)
Query 98 SVNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVL 157
SVNWDA+A CESGGNWSINTGNGYYGGL+FT GTW++NGGSGS +ASREEQIRVA NVL
Sbjct 37 SVNWDAVAACESGGNWSINTGNGYYGGLQFTMGTWQSNGGSGSPHHASREEQIRVANNVL 96
Query 158 RSQGIRAWPVCGRRG 172
++QGI AWP CG RG
Sbjct 97 QTQGIGAWPSCGARG 111
>gi|183983756|ref|YP_001852047.1| resuscitation-promoting factor RpfE [Mycobacterium marinum M]
gi|183177082|gb|ACC42192.1| resuscitation-promoting factor RpfE [Mycobacterium marinum M]
Length=243
Score = 130 bits (327), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 78/113 (70%), Positives = 82/113 (73%), Gaps = 11/113 (9%)
Query 60 DTPPAPEDAGFDPNLPPPLAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGN 119
D PPAPE F+P P P Y+VNWDAIAQCESGGNW INTGN
Sbjct 142 DVPPAPEPVAFEPPAPDVAPPPAPK-----------VYTVNWDAIAQCESGGNWGINTGN 190
Query 120 GYYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVLRSQGIRAWPVCGRRG 172
GY GGL+FTA TWRANGG+GSAA ASREEQIRVAENVLRSQGI AWPVCGRRG
Sbjct 191 GYSGGLQFTASTWRANGGAGSAAGASREEQIRVAENVLRSQGIGAWPVCGRRG 243
>gi|262203254|ref|YP_003274462.1| transglycosylase [Gordonia bronchialis DSM 43247]
gi|262086601|gb|ACY22569.1| Transglycosylase domain protein [Gordonia bronchialis DSM 43247]
Length=106
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/71 (84%), Positives = 65/71 (92%), Gaps = 0/71 (0%)
Query 100 NWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVLRS 159
NWDA+AQCESGGNW+INTGNGYYGGL+FT TW ANGGSGSA+NASREEQIRVAENVL +
Sbjct 34 NWDAVAQCESGGNWAINTGNGYYGGLQFTQSTWEANGGSGSASNASREEQIRVAENVLAT 93
Query 160 QGIRAWPVCGR 170
QG AWPVCG+
Sbjct 94 QGPGAWPVCGQ 104
>gi|315443664|ref|YP_004076543.1| transglycosylase-like protein [Mycobacterium sp. Spyr1]
gi|315261967|gb|ADT98708.1| transglycosylase-like protein [Mycobacterium sp. Spyr1]
Length=125
Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/74 (80%), Positives = 66/74 (90%), Gaps = 0/74 (0%)
Query 99 VNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVLR 158
VNWDA+A CESGGNWSINTGNGYYGGL+FT GTW++NGGSGS +ASREEQIRVA NVL+
Sbjct 52 VNWDAVAACESGGNWSINTGNGYYGGLQFTMGTWQSNGGSGSPHHASREEQIRVANNVLQ 111
Query 159 SQGIRAWPVCGRRG 172
+QGI AWP CG RG
Sbjct 112 TQGIGAWPTCGGRG 125
>gi|145223206|ref|YP_001133884.1| transglycosylase domain-containing protein [Mycobacterium gilvum
PYR-GCK]
gi|145215692|gb|ABP45096.1| Transglycosylase domain protein [Mycobacterium gilvum PYR-GCK]
Length=171
Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/74 (80%), Positives = 66/74 (90%), Gaps = 0/74 (0%)
Query 99 VNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVLR 158
VNWDA+A CESGGNWSINTGNGYYGGL+FT GTW++NGGSGS +ASREEQIRVA NVL+
Sbjct 98 VNWDAVAACESGGNWSINTGNGYYGGLQFTMGTWQSNGGSGSPHHASREEQIRVANNVLQ 157
Query 159 SQGIRAWPVCGRRG 172
+QGI AWP CG RG
Sbjct 158 TQGIGAWPTCGGRG 171
>gi|326383331|ref|ZP_08205019.1| transglycosylase domain-containing protein [Gordonia neofelifaecis
NRRL B-59395]
gi|326198081|gb|EGD55267.1| transglycosylase domain-containing protein [Gordonia neofelifaecis
NRRL B-59395]
Length=107
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/70 (83%), Positives = 63/70 (90%), Gaps = 0/70 (0%)
Query 100 NWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVLRS 159
NWDA+AQCESGG+WSINTGNGYYGGL+F+ TW ANGGSGSA NASREEQIRVAENVL +
Sbjct 35 NWDAVAQCESGGDWSINTGNGYYGGLQFSQSTWEANGGSGSANNASREEQIRVAENVLAT 94
Query 160 QGIRAWPVCG 169
QG AWPVCG
Sbjct 95 QGPGAWPVCG 104
>gi|118466908|ref|YP_880949.1| secreted protein [Mycobacterium avium 104]
gi|118168195|gb|ABK69092.1| secreted protein [Mycobacterium avium 104]
Length=146
Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/146 (58%), Positives = 88/146 (61%), Gaps = 17/146 (11%)
Query 44 VGFDPNLPPAP-----------------DAAPVDTPPAPEDAGFDPNLPPPLAPDFLSPP 86
+GFDPN+P A P AP D PP P
Sbjct 1 MGFDPNVPAAGPAPDAPPPPAPDAPPAPAPDAPPAPDAPPPPAPDAPPPPAPDAPPAPGP 60
Query 87 AEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASR 146
PP P AYSVNWDAIAQCESGGNW INTGNGY GGL+FT+ TW ANGGSGS A ASR
Sbjct 61 DVPPPPAPKAYSVNWDAIAQCESGGNWGINTGNGYAGGLQFTSSTWHANGGSGSPAGASR 120
Query 147 EEQIRVAENVLRSQGIRAWPVCGRRG 172
EEQIRVAENVL SQGI AWPVCGRRG
Sbjct 121 EEQIRVAENVLHSQGIGAWPVCGRRG 146
>gi|256379283|ref|YP_003102943.1| transglycosylase domain-containing protein [Actinosynnema mirum
DSM 43827]
gi|255923586|gb|ACU39097.1| Transglycosylase domain protein [Actinosynnema mirum DSM 43827]
Length=205
Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/75 (80%), Positives = 63/75 (84%), Gaps = 0/75 (0%)
Query 96 AYSVNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAEN 155
A +WDAIA+CESGGNWSINTGNGYYGGL+F GTW ANGGSG ASREEQIRVAEN
Sbjct 39 AQGADWDAIARCESGGNWSINTGNGYYGGLQFNPGTWAANGGSGMPHQASREEQIRVAEN 98
Query 156 VLRSQGIRAWPVCGR 170
VLRSQGI AWP CGR
Sbjct 99 VLRSQGIGAWPHCGR 113
>gi|229490962|ref|ZP_04384795.1| secreted protein [Rhodococcus erythropolis SK121]
gi|229322078|gb|EEN87866.1| secreted protein [Rhodococcus erythropolis SK121]
Length=184
Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/94 (62%), Positives = 72/94 (77%), Gaps = 0/94 (0%)
Query 78 LAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGG 137
+A ++ P + A + NWD +AQCESGG+W+INTGNGYYGGL+F+ TW ANGG
Sbjct 16 VAGALVAVPLTMSTGTASAATHNWDGVAQCESGGDWNINTGNGYYGGLQFSQSTWTANGG 75
Query 138 SGSAANASREEQIRVAENVLRSQGIRAWPVCGRR 171
+GS ANAS+EEQIRVAEN L+SQG AWPVCG+R
Sbjct 76 TGSPANASKEEQIRVAENTLQSQGPGAWPVCGQR 109
>gi|226305719|ref|YP_002765679.1| resuscitation-promoting factor [Rhodococcus erythropolis PR4]
gi|226184836|dbj|BAH32940.1| putative resuscitation-promoting factor [Rhodococcus erythropolis
PR4]
Length=184
Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/94 (62%), Positives = 72/94 (77%), Gaps = 0/94 (0%)
Query 78 LAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGG 137
+A ++ P + A + NWD +AQCESGG+W+INTGNGYYGGL+F+ TW ANGG
Sbjct 16 VAGALVAVPLTMSTGTASAATHNWDGVAQCESGGDWNINTGNGYYGGLQFSQSTWTANGG 75
Query 138 SGSAANASREEQIRVAENVLRSQGIRAWPVCGRR 171
+GS ANAS+EEQIRVAEN L+SQG AWPVCG+R
Sbjct 76 TGSPANASKEEQIRVAENTLQSQGPGAWPVCGQR 109
>gi|54023902|ref|YP_118144.1| hypothetical protein nfa19340 [Nocardia farcinica IFM 10152]
gi|54015410|dbj|BAD56780.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=111
Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/88 (68%), Positives = 67/88 (77%), Gaps = 0/88 (0%)
Query 82 FLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSA 141
F++ P + AY +WDA+AQCESGGNW INTGNGYYGGL+F+ TW ANGGSG A
Sbjct 21 FVAVPFAVSSATASAYGHDWDAVAQCESGGNWGINTGNGYYGGLQFSHSTWVANGGSGYA 80
Query 142 ANASREEQIRVAENVLRSQGIRAWPVCG 169
NASREEQIRVAENVL +QG AWP CG
Sbjct 81 HNASREEQIRVAENVLATQGPGAWPTCG 108
>gi|145223207|ref|YP_001133885.1| transglycosylase domain-containing protein [Mycobacterium gilvum
PYR-GCK]
gi|315443665|ref|YP_004076544.1| transglycosylase-like protein [Mycobacterium sp. Spyr1]
gi|145215693|gb|ABP45097.1| Transglycosylase domain protein [Mycobacterium gilvum PYR-GCK]
gi|315261968|gb|ADT98709.1| transglycosylase-like protein [Mycobacterium sp. Spyr1]
Length=170
Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/77 (75%), Positives = 65/77 (85%), Gaps = 0/77 (0%)
Query 96 AYSVNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAEN 155
A SVNWDAIAQCESGGNW+INTGNG++GGL+F TW ANGG G+ A A R EQIRVAEN
Sbjct 36 ADSVNWDAIAQCESGGNWAINTGNGHFGGLQFKQATWSANGGVGNPARAPRHEQIRVAEN 95
Query 156 VLRSQGIRAWPVCGRRG 172
VLR+QGI+AWP CG +G
Sbjct 96 VLRTQGIKAWPKCGAKG 112
>gi|54026495|ref|YP_120737.1| hypothetical protein nfa45220 [Nocardia farcinica IFM 10152]
gi|54018003|dbj|BAD59373.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=183
Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 53/71 (75%), Positives = 62/71 (88%), Gaps = 0/71 (0%)
Query 100 NWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVLRS 159
NWD +AQCESGGNW INTGNGYYGGL+F+ TW ANGG+G A AS+EEQIRVAENVL++
Sbjct 39 NWDGVAQCESGGNWGINTGNGYYGGLQFSHSTWVANGGTGYAHQASKEEQIRVAENVLQT 98
Query 160 QGIRAWPVCGR 170
QG+ AWPVCG+
Sbjct 99 QGVGAWPVCGQ 109
>gi|296140721|ref|YP_003647964.1| transglycosylase domain-containing protein [Tsukamurella paurometabola
DSM 20162]
gi|296028855|gb|ADG79625.1| Transglycosylase domain protein [Tsukamurella paurometabola DSM
20162]
Length=107
Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 61/75 (82%), Positives = 63/75 (84%), Gaps = 0/75 (0%)
Query 98 SVNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVL 157
SVNWDAIA CESGGNWS NTGNGYYGGL+F+ TWRANGGSG NASR EQIRVAENVL
Sbjct 33 SVNWDAIAACESGGNWSTNTGNGYYGGLQFSPSTWRANGGSGLPHNASRAEQIRVAENVL 92
Query 158 RSQGIRAWPVCGRRG 172
SQGI AWP CG RG
Sbjct 93 ASQGIGAWPSCGGRG 107
>gi|120404915|ref|YP_954744.1| transglycosylase domain-containing protein [Mycobacterium vanbaalenii
PYR-1]
gi|119957733|gb|ABM14738.1| Transglycosylase domain protein [Mycobacterium vanbaalenii PYR-1]
Length=170
Score = 123 bits (309), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 56/77 (73%), Positives = 65/77 (85%), Gaps = 0/77 (0%)
Query 96 AYSVNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAEN 155
A SVNWDAIAQCESGGNW+INTGNG++GGL+F TW ANGG G+ A A R EQIRVAEN
Sbjct 36 ADSVNWDAIAQCESGGNWAINTGNGHFGGLQFKQATWSANGGVGNPAAAPRHEQIRVAEN 95
Query 156 VLRSQGIRAWPVCGRRG 172
VLR+QG++AWP CG +G
Sbjct 96 VLRTQGLKAWPKCGAKG 112
>gi|254821845|ref|ZP_05226846.1| hypothetical protein MintA_18067 [Mycobacterium intracellulare
ATCC 13950]
Length=99
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/77 (88%), Positives = 70/77 (91%), Gaps = 0/77 (0%)
Query 96 AYSVNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAEN 155
AYSVNWDAIAQCESGGNWSI+TGNGY GGL+FT TWRANGGSGS + ASREEQIRVAEN
Sbjct 23 AYSVNWDAIAQCESGGNWSISTGNGYAGGLQFTPSTWRANGGSGSPSGASREEQIRVAEN 82
Query 156 VLRSQGIRAWPVCGRRG 172
VL SQGI AWPVCGRRG
Sbjct 83 VLHSQGIGAWPVCGRRG 99
>gi|256374622|ref|YP_003098282.1| transglycosylase domain-containing protein [Actinosynnema mirum
DSM 43827]
gi|255918925|gb|ACU34436.1| Transglycosylase domain protein [Actinosynnema mirum DSM 43827]
Length=224
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/74 (75%), Positives = 64/74 (87%), Gaps = 0/74 (0%)
Query 99 VNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVLR 158
VNWDA+A CESGGNWSINTGNGYYGGL+F+ TW ++GGSG A ASR EQIRVAENV++
Sbjct 49 VNWDAVAACESGGNWSINTGNGYYGGLQFSPSTWSSHGGSGMANQASRAEQIRVAENVMK 108
Query 159 SQGIRAWPVCGRRG 172
+QGI AWPVCG +G
Sbjct 109 TQGIGAWPVCGPKG 122
>gi|300790325|ref|YP_003770616.1| hypothetical protein AMED_8518 [Amycolatopsis mediterranei U32]
gi|299799839|gb|ADJ50214.1| secreted protein [Amycolatopsis mediterranei U32]
gi|340532006|gb|AEK47211.1| hypothetical protein RAM_43720 [Amycolatopsis mediterranei S699]
Length=215
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/73 (77%), Positives = 62/73 (85%), Gaps = 0/73 (0%)
Query 96 AYSVNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAEN 155
A + NWDAIAQCES GNW+ NTGNGYYGGL+FT TW+A GGSGSAANASR+EQI VAE
Sbjct 38 ASATNWDAIAQCESSGNWNTNTGNGYYGGLQFTQSTWKAYGGSGSAANASRDEQIAVAER 97
Query 156 VLRSQGIRAWPVC 168
VL+ QGI AWPVC
Sbjct 98 VLQGQGIGAWPVC 110
>gi|118469017|ref|YP_888904.1| hypothetical protein MSMEG_4640 [Mycobacterium smegmatis str.
MC2 155]
gi|118170304|gb|ABK71200.1| secreted protein [Mycobacterium smegmatis str. MC2 155]
Length=153
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/95 (65%), Positives = 68/95 (72%), Gaps = 0/95 (0%)
Query 78 LAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGG 137
LA P +P A SVNWDAIA CESGGNWS NTGNG+YGGL+F TW A+GG
Sbjct 10 LAGALAMGPMVLSPATAAADSVNWDAIAACESGGNWSTNTGNGHYGGLQFKQSTWAAHGG 69
Query 138 SGSAANASREEQIRVAENVLRSQGIRAWPVCGRRG 172
GS A ASRE+QI VAENVLR+QG+ AWP CG RG
Sbjct 70 VGSPATASREQQIAVAENVLRTQGLAAWPKCGARG 104
>gi|111023353|ref|YP_706325.1| hypothetical protein RHA1_ro06390 [Rhodococcus jostii RHA1]
gi|110822883|gb|ABG98167.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=184
Score = 120 bits (302), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 54/75 (72%), Positives = 64/75 (86%), Gaps = 0/75 (0%)
Query 96 AYSVNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAEN 155
A S NWD +AQCESGGNW INTGNGYYGGL+F+ TW ANGG+GSA++AS+ EQ+RVAEN
Sbjct 34 AASHNWDGVAQCESGGNWGINTGNGYYGGLQFSQSTWEANGGTGSASSASKAEQVRVAEN 93
Query 156 VLRSQGIRAWPVCGR 170
VL +QG AWPVCG+
Sbjct 94 VLATQGQGAWPVCGQ 108
>gi|226365860|ref|YP_002783643.1| resuscitation-promoting factor [Rhodococcus opacus B4]
gi|226244350|dbj|BAH54698.1| putative resuscitation-promoting factor [Rhodococcus opacus B4]
Length=184
Score = 120 bits (302), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 55/75 (74%), Positives = 63/75 (84%), Gaps = 0/75 (0%)
Query 96 AYSVNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAEN 155
A S NWD +A CESGGNW INTGNGYYGGL+F+ TW ANGGSGSA+NAS+ EQ+RVAEN
Sbjct 34 AASHNWDGVAACESGGNWGINTGNGYYGGLQFSQSTWEANGGSGSASNASKAEQVRVAEN 93
Query 156 VLRSQGIRAWPVCGR 170
VL +QG AWPVCG+
Sbjct 94 VLATQGQGAWPVCGQ 108
>gi|343924791|ref|ZP_08764330.1| putative resuscitation-promoting factor [Gordonia alkanivorans
NBRC 16433]
gi|343765298|dbj|GAA11256.1| putative resuscitation-promoting factor [Gordonia alkanivorans
NBRC 16433]
Length=84
Score = 120 bits (301), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/74 (79%), Positives = 64/74 (87%), Gaps = 0/74 (0%)
Query 96 AYSVNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAEN 155
A S NWDA+AQCESGG+WSINTGNGYYGGL+F+ TW ANGGSG+ ANASREEQIRVAEN
Sbjct 8 AASGNWDAVAQCESGGDWSINTGNGYYGGLQFSQSTWEANGGSGNPANASREEQIRVAEN 67
Query 156 VLRSQGIRAWPVCG 169
VL +QG AWP CG
Sbjct 68 VLATQGPGAWPTCG 81
>gi|257057377|ref|YP_003135209.1| transglycosylase family protein [Saccharomonospora viridis DSM
43017]
gi|256587249|gb|ACU98382.1| transglycosylase family protein [Saccharomonospora viridis DSM
43017]
Length=205
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/75 (74%), Positives = 62/75 (83%), Gaps = 0/75 (0%)
Query 98 SVNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVL 157
SVNWDAIA+CESGG+WSINTGNGYYGGL+F TW+A GG+G ASREEQI VAE VL
Sbjct 16 SVNWDAIAECESGGDWSINTGNGYYGGLQFKLSTWQAYGGTGMPHEASREEQIAVAERVL 75
Query 158 RSQGIRAWPVCGRRG 172
+ QGI AWPVCG +G
Sbjct 76 QGQGIGAWPVCGPKG 90
>gi|108800529|ref|YP_640726.1| transglycosylase-like protein [Mycobacterium sp. MCS]
gi|119869668|ref|YP_939620.1| transglycosylase domain-containing protein [Mycobacterium sp.
KMS]
gi|126436145|ref|YP_001071836.1| transglycosylase domain-containing protein [Mycobacterium sp.
JLS]
gi|108770948|gb|ABG09670.1| Transglycosylase-like protein [Mycobacterium sp. MCS]
gi|119695757|gb|ABL92830.1| Transglycosylase domain protein [Mycobacterium sp. KMS]
gi|126235945|gb|ABN99345.1| Transglycosylase domain protein [Mycobacterium sp. JLS]
Length=171
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/95 (63%), Positives = 68/95 (72%), Gaps = 6/95 (6%)
Query 78 LAPDFLSPPAEEAPPVPVAYSVNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGG 137
L P F S A SVNWDAIAQCESGGNWS NTGNGY+GGL+F TW ++GG
Sbjct 23 LVPTFFSSATASAD------SVNWDAIAQCESGGNWSTNTGNGYFGGLQFKPTTWSSHGG 76
Query 138 SGSAANASREEQIRVAENVLRSQGIRAWPVCGRRG 172
G+ ANASR EQI+VAE VL +QG++AWP CG RG
Sbjct 77 RGNPANASRSEQIQVAERVLATQGLKAWPKCGPRG 111
>gi|312140603|ref|YP_004007939.1| resuscitation-promoting factor rpfd [Rhodococcus equi 103S]
gi|325675770|ref|ZP_08155454.1| transglycosylase family protein [Rhodococcus equi ATCC 33707]
gi|311889942|emb|CBH49259.1| putative resuscitation-promoting factor rpfD [Rhodococcus equi
103S]
gi|325553741|gb|EGD23419.1| transglycosylase family protein [Rhodococcus equi ATCC 33707]
Length=183
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/71 (74%), Positives = 58/71 (82%), Gaps = 0/71 (0%)
Query 100 NWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVLRS 159
NWD +AQCESGGNW INTGNGYYGGL+F+ TW ANGG+GS AS+EEQIRVAEN L S
Sbjct 38 NWDGVAQCESGGNWGINTGNGYYGGLQFSQSTWTANGGTGSPHTASKEEQIRVAENTLAS 97
Query 160 QGIRAWPVCGR 170
QG AWP CG+
Sbjct 98 QGPGAWPTCGQ 108
>gi|302530572|ref|ZP_07282914.1| predicted protein [Streptomyces sp. AA4]
gi|302439467|gb|EFL11283.1| predicted protein [Streptomyces sp. AA4]
Length=208
Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/76 (68%), Positives = 61/76 (81%), Gaps = 0/76 (0%)
Query 96 AYSVNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAEN 155
A + NWDAIAQCESGGNW+ NTGNGYYGGL+FT TW+A GG+GS ASRE+QI VAE
Sbjct 38 ASATNWDAIAQCESGGNWNTNTGNGYYGGLQFTQSTWKAYGGTGSPQGASREQQIAVAER 97
Query 156 VLRSQGIRAWPVCGRR 171
V++ QG AWPVC ++
Sbjct 98 VMQGQGPGAWPVCSKK 113
>gi|312139409|ref|YP_004006745.1| transglycosylase [Rhodococcus equi 103S]
gi|325672705|ref|ZP_08152401.1| resuscitation-promoting factor [Rhodococcus equi ATCC 33707]
gi|311888748|emb|CBH48060.1| putative transglycosylase [Rhodococcus equi 103S]
gi|325556582|gb|EGD26248.1| resuscitation-promoting factor [Rhodococcus equi ATCC 33707]
Length=195
Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 50/73 (69%), Positives = 60/73 (83%), Gaps = 0/73 (0%)
Query 98 SVNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAENVL 157
S +W +A+CES GNWS NTGNGYYGGL+F+ TW A GG+GSA+NAS+ EQIRVAENVL
Sbjct 36 SHDWSGVAECESSGNWSANTGNGYYGGLQFSQSTWEAYGGTGSASNASQAEQIRVAENVL 95
Query 158 RSQGIRAWPVCGR 170
QG+ AWPVCG+
Sbjct 96 DGQGVGAWPVCGQ 108
>gi|108799874|ref|YP_640071.1| transglycosylase-like protein [Mycobacterium sp. MCS]
gi|108770293|gb|ABG09015.1| Transglycosylase-like protein [Mycobacterium sp. MCS]
Length=181
Score = 113 bits (283), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 54/80 (68%), Positives = 61/80 (77%), Gaps = 0/80 (0%)
Query 90 APPVPVAYSVNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQ 149
A P A +VNWDAIAQCES GNW+INTGNG+YGGL+F TWR +GG GS A RE Q
Sbjct 51 ATPKANASTVNWDAIAQCESSGNWAINTGNGFYGGLQFLPATWREHGGVGSPDKAPREYQ 110
Query 150 IRVAENVLRSQGIRAWPVCG 169
I +AE VLR+QGI AWPVCG
Sbjct 111 IAIAERVLRTQGIGAWPVCG 130
>gi|126437075|ref|YP_001072766.1| transglycosylase domain-containing protein [Mycobacterium sp.
JLS]
gi|126236875|gb|ABO00276.1| Transglycosylase domain protein [Mycobacterium sp. JLS]
Length=153
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/82 (63%), Positives = 66/82 (81%), Gaps = 0/82 (0%)
Query 91 PPVPVAYSVNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQI 150
P A +++WDAIAQCESGG+WSI+TGNGY+GGL+F TW +GG G+ A+A+R EQI
Sbjct 26 PTSAYANAIDWDAIAQCESGGDWSISTGNGYFGGLQFKPSTWAEHGGRGNPADAARTEQI 85
Query 151 RVAENVLRSQGIRAWPVCGRRG 172
R+AE V R+QG+ AWPVCGR+G
Sbjct 86 RIAERVTRTQGLGAWPVCGRKG 107
>gi|312141114|ref|YP_004008450.1| resuscitation-promoting factor rpfc [Rhodococcus equi 103S]
gi|325674066|ref|ZP_08153756.1| resuscitation-promoting factor [Rhodococcus equi ATCC 33707]
gi|311890453|emb|CBH49771.1| putative resuscitation-promoting factor rpfC [Rhodococcus equi
103S]
gi|325555331|gb|EGD25003.1| resuscitation-promoting factor [Rhodococcus equi ATCC 33707]
Length=109
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/75 (72%), Positives = 61/75 (82%), Gaps = 0/75 (0%)
Query 96 AYSVNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQIRVAEN 155
A S NWDA+AQCES GNW+ NTGNG+YGGL+FTA TW++ GGSG A SREEQIRVAEN
Sbjct 33 AASGNWDAVAQCESSGNWAANTGNGFYGGLQFTASTWQSFGGSGMAHQNSREEQIRVAEN 92
Query 156 VLRSQGIRAWPVCGR 170
VL QG AWPVCG+
Sbjct 93 VLAGQGRGAWPVCGQ 107
>gi|119868984|ref|YP_938936.1| transglycosylase domain-containing protein [Mycobacterium sp.
KMS]
gi|126435517|ref|YP_001071208.1| transglycosylase domain-containing protein [Mycobacterium sp.
JLS]
gi|119695073|gb|ABL92146.1| Transglycosylase domain protein [Mycobacterium sp. KMS]
gi|126235317|gb|ABN98717.1| Transglycosylase domain protein [Mycobacterium sp. JLS]
Length=152
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/80 (68%), Positives = 61/80 (77%), Gaps = 0/80 (0%)
Query 90 APPVPVAYSVNWDAIAQCESGGNWSINTGNGYYGGLRFTAGTWRANGGSGSAANASREEQ 149
A P A +VNWDAIAQCES GNW+INTGNG+YGGL+F TWR +GG GS A RE Q
Sbjct 22 ATPKANASTVNWDAIAQCESSGNWAINTGNGFYGGLQFLPATWREHGGVGSPDKAPREYQ 81
Query 150 IRVAENVLRSQGIRAWPVCG 169
I +AE VLR+QGI AWPVCG
Sbjct 82 IAIAERVLRTQGIGAWPVCG 101
Lambda K H
0.312 0.133 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 139975636738
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40