BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2464c Length=268 Score E Sequences producing significant alignments: (Bits) Value gi|15609601|ref|NP_216980.1| DNA glycosylase [Mycobacterium tube... 543 1e-152 gi|253798457|ref|YP_003031458.1| DNA glycosylase [Mycobacterium ... 541 4e-152 gi|306780507|ref|ZP_07418844.1| DNA glycosylase [Mycobacterium t... 541 4e-152 gi|340627478|ref|YP_004745930.1| putative DNA glycosylase [Mycob... 516 1e-144 gi|254821431|ref|ZP_05226432.1| hypothetical protein MintA_15951... 457 6e-127 gi|342857860|ref|ZP_08714516.1| hypothetical protein MCOL_03260 ... 453 1e-125 gi|118465909|ref|YP_880937.1| endonuclease VIII and DNA n-glycos... 451 7e-125 gi|41408382|ref|NP_961218.1| hypothetical protein MAP2284c [Myco... 451 8e-125 gi|183983786|ref|YP_001852077.1| formamidopyrimidine-DNA glycosy... 447 6e-124 gi|240170935|ref|ZP_04749594.1| formamidopyrimidine-DNA glycosyl... 444 4e-123 gi|118618996|ref|YP_907328.1| formamidopyrimidine-DNA glycosylas... 439 2e-121 gi|336458282|gb|EGO37262.1| formamidopyrimidine-DNA glycosylase ... 434 8e-120 gi|296170468|ref|ZP_06852056.1| DNA-formamidopyrimidine glycosyl... 432 3e-119 gi|120405005|ref|YP_954834.1| formamidopyrimidine-DNA glycolase ... 417 6e-115 gi|118473590|ref|YP_888944.1| formamidopyrimidine-DNA glycosylas... 413 1e-113 gi|145223169|ref|YP_001133847.1| formamidopyrimidine-DNA glycosy... 407 1e-111 gi|333990084|ref|YP_004522698.1| formamidopyrimidine-DNA glycosy... 405 3e-111 gi|315443627|ref|YP_004076506.1| formamidopyrimidine-DNA glycosy... 405 4e-111 gi|108800564|ref|YP_640761.1| formamidopyrimidine-DNA glycosylas... 389 3e-106 gi|126436180|ref|YP_001071871.1| formamidopyrimidine-DNA glycosy... 387 1e-105 gi|226360505|ref|YP_002778283.1| DNA glycosylase [Rhodococcus op... 380 1e-103 gi|111018385|ref|YP_701357.1| DNA-formamidopyrimidine glycosylas... 376 2e-102 gi|312140366|ref|YP_004007702.1| DNA-formamidopyrimidine glycosy... 375 3e-102 gi|325676024|ref|ZP_08155707.1| DNA-formamidopyrimidine glycosyl... 374 1e-101 gi|169628665|ref|YP_001702314.1| formamidopyrimidine-DNA glycosy... 356 2e-96 gi|226307305|ref|YP_002767265.1| DNA glycosylase [Rhodococcus er... 356 2e-96 gi|229493198|ref|ZP_04386990.1| formamidopyrimidine-DNA glycosyl... 356 3e-96 gi|54023295|ref|YP_117537.1| putative formamidopyrimidine-DNA gl... 341 6e-92 gi|343927532|ref|ZP_08767002.1| putative DNA glycosylase [Gordon... 333 1e-89 gi|262201979|ref|YP_003273187.1| DNA-(apurinic or apyrimidinic s... 331 5e-89 gi|296139126|ref|YP_003646369.1| DNA-(apurinic or apyrimidinic s... 328 7e-88 gi|134097938|ref|YP_001103599.1| formamidopyrimidine-DNA glycosy... 312 3e-83 gi|319947983|ref|ZP_08022160.1| DNA-formamidopyrimidine glycosyl... 312 4e-83 gi|302529039|ref|ZP_07281381.1| formamidopyrimidine-DNA glycosyl... 304 1e-80 gi|300788645|ref|YP_003768936.1| endonuclease VIII [Amycolatopsi... 301 6e-80 gi|324997971|ref|ZP_08119083.1| endonuclease VIII [Pseudonocardi... 293 1e-77 gi|333918753|ref|YP_004492334.1| fomramidopyrimidine-DNA glycosy... 293 1e-77 gi|331695758|ref|YP_004331997.1| DNA-(apurinic or apyrimidinic s... 288 9e-76 gi|326382819|ref|ZP_08204509.1| DNA-(apurinic or apyrimidinic si... 280 1e-73 gi|257055240|ref|YP_003133072.1| formamidopyrimidine-DNA glycosy... 278 4e-73 gi|256375288|ref|YP_003098948.1| DNA glycosylase/AP lyase [Actin... 278 5e-73 gi|119717704|ref|YP_924669.1| formamidopyrimidine-DNA glycolase ... 276 2e-72 gi|296270386|ref|YP_003653018.1| DNA-(apurinic or apyrimidinic s... 268 4e-70 gi|302534414|ref|ZP_07286756.1| formamidopyrimidine-DNA glycosyl... 268 6e-70 gi|328882456|emb|CCA55695.1| Formamidopyrimidine-DNA glycosylase... 267 1e-69 gi|29831970|ref|NP_826604.1| endonuclease VIII and DNA N-glycosy... 267 1e-69 gi|302545408|ref|ZP_07297750.1| DNA-formamidopyrimidine glycosyl... 265 4e-69 gi|297625920|ref|YP_003687683.1| formamidopyrimidine-DNA glycosy... 265 6e-69 gi|295838891|ref|ZP_06825824.1| DNA-formamidopyrimidine glycosyl... 264 9e-69 gi|158315457|ref|YP_001507965.1| DNA-(apurinic or apyrimidinic s... 264 1e-68 >gi|15609601|ref|NP_216980.1| DNA glycosylase [Mycobacterium tuberculosis H37Rv] gi|15841988|ref|NP_337025.1| formamidopyrimidine-DNA glycosylase [Mycobacterium tuberculosis CDC1551] gi|31793645|ref|NP_856138.1| DNA glycosylase [Mycobacterium bovis AF2122/97] 56 more sequence titles Length=268 Score = 543 bits (1398), Expect = 1e-152, Method: Compositional matrix adjust. Identities = 267/268 (99%), Positives = 268/268 (100%), Gaps = 0/268 (0%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG Sbjct 1 MPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA Sbjct 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP Sbjct 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG Sbjct 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 Query 241 EPCRVCGGVIRTALLEGRNVFWCPVCQT 268 EPCRVCGGVIRTALLEGRNVFWCPVCQT Sbjct 241 EPCRVCGGVIRTALLEGRNVFWCPVCQT 268 >gi|253798457|ref|YP_003031458.1| DNA glycosylase [Mycobacterium tuberculosis KZN 1435] gi|289553745|ref|ZP_06442955.1| DNA glycosylase [Mycobacterium tuberculosis KZN 605] gi|297635070|ref|ZP_06952850.1| DNA glycosylase [Mycobacterium tuberculosis KZN 4207] gi|297732061|ref|ZP_06961179.1| DNA glycosylase [Mycobacterium tuberculosis KZN R506] gi|313659397|ref|ZP_07816277.1| DNA glycosylase [Mycobacterium tuberculosis KZN V2475] gi|253319960|gb|ACT24563.1| DNA glycosylase [Mycobacterium tuberculosis KZN 1435] gi|289438377|gb|EFD20870.1| DNA glycosylase [Mycobacterium tuberculosis KZN 605] gi|328458225|gb|AEB03648.1| DNA glycosylase [Mycobacterium tuberculosis KZN 4207] Length=268 Score = 541 bits (1394), Expect = 4e-152, Method: Compositional matrix adjust. Identities = 266/268 (99%), Positives = 267/268 (99%), Gaps = 0/268 (0%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG Sbjct 1 MPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVG EFGTDLRGPTVCESIDDGEVA Sbjct 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGTEFGTDLRGPTVCESIDDGEVA 120 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP Sbjct 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG Sbjct 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 Query 241 EPCRVCGGVIRTALLEGRNVFWCPVCQT 268 EPCRVCGGVIRTALLEGRNVFWCPVCQT Sbjct 241 EPCRVCGGVIRTALLEGRNVFWCPVCQT 268 >gi|306780507|ref|ZP_07418844.1| DNA glycosylase [Mycobacterium tuberculosis SUMu002] gi|306785259|ref|ZP_07423581.1| DNA glycosylase [Mycobacterium tuberculosis SUMu003] gi|306789618|ref|ZP_07427940.1| DNA glycosylase [Mycobacterium tuberculosis SUMu004] 13 more sequence titles Length=268 Score = 541 bits (1394), Expect = 4e-152, Method: Compositional matrix adjust. Identities = 266/268 (99%), Positives = 268/268 (100%), Gaps = 0/268 (0%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLA+LHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG Sbjct 1 MPEGHTLHRLAQLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA Sbjct 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP Sbjct 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG Sbjct 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 Query 241 EPCRVCGGVIRTALLEGRNVFWCPVCQT 268 EPCRVCGGVIRTALLEGRNVFWCPVCQT Sbjct 241 EPCRVCGGVIRTALLEGRNVFWCPVCQT 268 >gi|340627478|ref|YP_004745930.1| putative DNA glycosylase [Mycobacterium canettii CIPT 140010059] gi|340005668|emb|CCC44834.1| putative DNA glycosylase [Mycobacterium canettii CIPT 140010059] Length=268 Score = 516 bits (1330), Expect = 1e-144, Method: Compositional matrix adjust. Identities = 256/268 (96%), Positives = 260/268 (98%), Gaps = 0/268 (0%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG Sbjct 1 MPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 GPVVHVHLGLYGTFTEWARP DG LPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA Sbjct 61 GPVVHVHLGLYGTFTEWARPPDGLLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 DVVARLGPDPLRSDANPS AWSRITKSRRPIGALL+DQTVIAGVGNVYR+ELLFRHRIDP Sbjct 121 DVVARLGPDPLRSDANPSLAWSRITKSRRPIGALLIDQTVIAGVGNVYRSELLFRHRIDP 180 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 R GRGIGEPEFDAAW DLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG Sbjct 181 YRHGRGIGEPEFDAAWYDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 Query 241 EPCRVCGGVIRTALLEGRNVFWCPVCQT 268 +PCRVCG VIRTALLEGRNVFWCP CQT Sbjct 241 QPCRVCGEVIRTALLEGRNVFWCPACQT 268 >gi|254821431|ref|ZP_05226432.1| hypothetical protein MintA_15951 [Mycobacterium intracellulare ATCC 13950] Length=268 Score = 457 bits (1177), Expect = 6e-127, Method: Compositional matrix adjust. Identities = 218/267 (82%), Positives = 241/267 (91%), Gaps = 0/267 (0%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLARLHQRR+AGAPVSVSSPQGRFAD+A+A++GRVL+R SAWGKHLFHHY G Sbjct 1 MPEGHTLHRLARLHQRRYAGAPVSVSSPQGRFADAAAAVDGRVLQRTSAWGKHLFHHYAG 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 GP+VHVHLGLYG FTEW RP DG PE GQVRMRM+GA++GTDLRGPTVCE ID+G+V+ Sbjct 61 GPIVHVHLGLYGAFTEWERPDDGSFPEAVGQVRMRMIGADYGTDLRGPTVCEVIDEGQVS 120 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 DV+ARLGPDPLR DA+PS AW RI KSRRPIGALLMDQTV+AGVGNVYR+ELL+RH IDP Sbjct 121 DVLARLGPDPLRGDADPSWAWKRIAKSRRPIGALLMDQTVMAGVGNVYRSELLYRHGIDP 180 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 RPGR +GE EFDAAW DLV+LMKVGLRRGKIIVVRPEHDHG PSY PDRPRTYVYRR+G Sbjct 181 FRPGRDVGEDEFDAAWIDLVALMKVGLRRGKIIVVRPEHDHGAPSYRPDRPRTYVYRRSG 240 Query 241 EPCRVCGGVIRTALLEGRNVFWCPVCQ 267 EPCRVC IRT +LEGRNVFWCP CQ Sbjct 241 EPCRVCKAPIRTTVLEGRNVFWCPTCQ 267 >gi|342857860|ref|ZP_08714516.1| hypothetical protein MCOL_03260 [Mycobacterium colombiense CECT 3035] gi|342135193|gb|EGT88359.1| hypothetical protein MCOL_03260 [Mycobacterium colombiense CECT 3035] Length=268 Score = 453 bits (1165), Expect = 1e-125, Method: Compositional matrix adjust. Identities = 218/267 (82%), Positives = 238/267 (90%), Gaps = 0/267 (0%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLARLHQRR+AGAPV+VSSPQGRFADSA+ ++GRVL+R SAWGKHLFHHY G Sbjct 1 MPEGHTLHRLARLHQRRYAGAPVAVSSPQGRFADSAAVVDGRVLQRTSAWGKHLFHHYAG 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 GP+VHVHLGLYG FTEW RP DG PE GQVRMRM+GA +GTDLRGPTVCE ID+G+V+ Sbjct 61 GPIVHVHLGLYGAFTEWERPGDGLFPEAIGQVRMRMIGAGYGTDLRGPTVCEVIDEGQVS 120 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 DV+ARLGPDPLR DA+PS AW RI KSRR IGALLMDQTV+AGVGNVYR+ELLFRH IDP Sbjct 121 DVLARLGPDPLRGDADPSWAWKRIAKSRRTIGALLMDQTVMAGVGNVYRSELLFRHGIDP 180 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 RPGR +GE EFDAAW DLV+LMKVGLRRGKIIVVRPEHDHG PSY PDRPRTYVYRR G Sbjct 181 FRPGRDVGEDEFDAAWTDLVALMKVGLRRGKIIVVRPEHDHGAPSYRPDRPRTYVYRRTG 240 Query 241 EPCRVCGGVIRTALLEGRNVFWCPVCQ 267 EPCRV G IRTA+LEGRNVFWCP CQ Sbjct 241 EPCRVSGDPIRTAVLEGRNVFWCPTCQ 267 >gi|118465909|ref|YP_880937.1| endonuclease VIII and DNA n-glycosylase with an AP lyase activity [Mycobacterium avium 104] gi|254774526|ref|ZP_05216042.1| endonuclease VIII and DNA n-glycosylase with an AP lyase activity [Mycobacterium avium subsp. avium ATCC 25291] gi|118167196|gb|ABK68093.1| endonuclease VIII and dna n-glycosylase with an ap lyase activity [Mycobacterium avium 104] Length=268 Score = 451 bits (1159), Expect = 7e-125, Method: Compositional matrix adjust. Identities = 216/267 (81%), Positives = 240/267 (90%), Gaps = 0/267 (0%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLARLHQRR+AGAPV+V+SPQGRFA++A+ ++GRVLRR SAWGKHLFHHY G Sbjct 1 MPEGHTLHRLARLHQRRYAGAPVAVTSPQGRFAEAAAVVDGRVLRRTSAWGKHLFHHYAG 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 GP+VHVHLGLYG+F+EW RP DG LP+P GQVRMRMVGA GTDLRGPTVCE ID+G+V+ Sbjct 61 GPIVHVHLGLYGSFSEWERPGDGPLPDPVGQVRMRMVGASHGTDLRGPTVCEVIDEGQVS 120 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 DV+ARLGPDPLR DA+PS AW RI KSRRPIGALLMDQTV+AGVGNVYR+ELLFRH IDP Sbjct 121 DVLARLGPDPLRDDADPSWAWQRIAKSRRPIGALLMDQTVMAGVGNVYRSELLFRHGIDP 180 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 R GR +GE EFDAAW DLV+LMKVGLRRGKIIVVRPEHD G PSY PDRPRTYVYRRAG Sbjct 181 YRAGRDVGEAEFDAAWTDLVALMKVGLRRGKIIVVRPEHDRGAPSYRPDRPRTYVYRRAG 240 Query 241 EPCRVCGGVIRTALLEGRNVFWCPVCQ 267 E CRVCG +RTA+LEGRNVFWCP CQ Sbjct 241 EACRVCGEPVRTAVLEGRNVFWCPTCQ 267 >gi|41408382|ref|NP_961218.1| hypothetical protein MAP2284c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396738|gb|AAS04601.1| hypothetical protein MAP_2284c [Mycobacterium avium subsp. paratuberculosis K-10] Length=268 Score = 451 bits (1159), Expect = 8e-125, Method: Compositional matrix adjust. Identities = 217/267 (82%), Positives = 240/267 (90%), Gaps = 0/267 (0%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLARLHQRR+AGAPV+VSSPQGRFA++A+ ++GRVLRR SAWGKHLFHHY G Sbjct 1 MPEGHTLHRLARLHQRRYAGAPVAVSSPQGRFAEAAAVVDGRVLRRTSAWGKHLFHHYAG 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 GP+VHVHLGLYG+F+EW RP DG LP+P GQVRMRMVGA GTDLRGPTVCE ID+G+V+ Sbjct 61 GPIVHVHLGLYGSFSEWERPGDGPLPDPVGQVRMRMVGAGHGTDLRGPTVCEVIDEGQVS 120 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 DV+ARLGPDPLR DA+PS AW RI KSRRPIGALLMDQTV+AGVGNVYR+ELLFRH IDP Sbjct 121 DVLARLGPDPLRDDADPSWAWQRIAKSRRPIGALLMDQTVMAGVGNVYRSELLFRHGIDP 180 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 R GR +GE EFDAAW DLV+LMKVGLRRGKIIVVRPEHD G PSY PDRPRTYVYRRAG Sbjct 181 YRAGRDVGEAEFDAAWTDLVALMKVGLRRGKIIVVRPEHDRGAPSYRPDRPRTYVYRRAG 240 Query 241 EPCRVCGGVIRTALLEGRNVFWCPVCQ 267 E CRVCG +RTA+LEGRNVFWCP CQ Sbjct 241 EACRVCGEPVRTAVLEGRNVFWCPTCQ 267 >gi|183983786|ref|YP_001852077.1| formamidopyrimidine-DNA glycosylase [Mycobacterium marinum M] gi|183177112|gb|ACC42222.1| formamidopyrimidine-DNA glycosylase [Mycobacterium marinum M] Length=268 Score = 447 bits (1151), Expect = 6e-124, Method: Compositional matrix adjust. Identities = 216/268 (81%), Positives = 234/268 (88%), Gaps = 0/268 (0%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLARLHQRRFAGAPV VSSPQG+FADSA A++GRVLR ASAWGKHLFHHY G Sbjct 1 MPEGHTLHRLARLHQRRFAGAPVVVSSPQGKFADSAGAVDGRVLRAASAWGKHLFHHYAG 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 GPVVHVHLGLYG FTEWAR LP+P GQVRMRMVGAE+GTDLRGPTVCE IDD +VA Sbjct 61 GPVVHVHLGLYGAFTEWARSAGELLPDPVGQVRMRMVGAEYGTDLRGPTVCEVIDDAQVA 120 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 DV+ARLGPDPLR DA+PS AW+RI KSRRPIGALLMDQ V+AGVGNVYR+ELLFRHRIDP Sbjct 121 DVLARLGPDPLRKDADPSWAWARIAKSRRPIGALLMDQKVMAGVGNVYRSELLFRHRIDP 180 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 R G+ I E EF AAW DLV+LMKVGLR GKI+VVRPEHDHG PSY RPRTYVYRRAG Sbjct 181 YRSGQRITEAEFSAAWTDLVALMKVGLRGGKIVVVRPEHDHGAPSYAAGRPRTYVYRRAG 240 Query 241 EPCRVCGGVIRTALLEGRNVFWCPVCQT 268 +PCRVCG + TA+LEGRNVFWCP CQ Sbjct 241 DPCRVCGATVGTAVLEGRNVFWCPSCQA 268 >gi|240170935|ref|ZP_04749594.1| formamidopyrimidine-DNA glycosylase [Mycobacterium kansasii ATCC 12478] Length=268 Score = 444 bits (1143), Expect = 4e-123, Method: Compositional matrix adjust. Identities = 214/268 (80%), Positives = 235/268 (88%), Gaps = 0/268 (0%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLARLH RRFAGAPV+VSSPQGRFADSA+A++GRVLRR S WGKHLFHHY G Sbjct 1 MPEGHTLHRLARLHHRRFAGAPVAVSSPQGRFADSAAAVDGRVLRRTSVWGKHLFHHYSG 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 G +VHVHLGLYG FTEW RP LPEP GQVRMRMVGA FG+DLRGPTVCE ID+ +VA Sbjct 61 GGIVHVHLGLYGAFTEWERPAADPLPEPVGQVRMRMVGAAFGSDLRGPTVCEVIDESQVA 120 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 +VVARLGPDPLR DA+PS AW+RI KSRRPIGALLMDQTV+AGVGNVYR+ELLFRHRIDP Sbjct 121 EVVARLGPDPLRRDADPSWAWARIMKSRRPIGALLMDQTVMAGVGNVYRSELLFRHRIDP 180 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 R G+ I E EF AAW DLV+LMKVGLRRGKII VRPEHDHG PSY PDRPRTYVYRRAG Sbjct 181 YRAGQRITEAEFAAAWTDLVALMKVGLRRGKIIAVRPEHDHGAPSYRPDRPRTYVYRRAG 240 Query 241 EPCRVCGGVIRTALLEGRNVFWCPVCQT 268 +PCR+C +RTA LEGRN+FWCP CQ+ Sbjct 241 DPCRLCATTVRTAELEGRNLFWCPTCQS 268 >gi|118618996|ref|YP_907328.1| formamidopyrimidine-DNA glycosylase [Mycobacterium ulcerans Agy99] gi|118571106|gb|ABL05857.1| formamidopyrimidine-DNA glycosylase [Mycobacterium ulcerans Agy99] Length=268 Score = 439 bits (1128), Expect = 2e-121, Method: Compositional matrix adjust. Identities = 213/268 (80%), Positives = 231/268 (87%), Gaps = 0/268 (0%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLARLHQRRFAGAPV VSSPQG+FADSA A++GRVLR ASAWGKHLFHHY G Sbjct 1 MPEGHTLHRLARLHQRRFAGAPVVVSSPQGKFADSAGAVDGRVLRAASAWGKHLFHHYAG 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 GPVVHVHLGLYG FTEW R LP+P GQVRMRMVGAE+GTDLRGPTVCE IDD +VA Sbjct 61 GPVVHVHLGLYGAFTEWVRSAGELLPDPVGQVRMRMVGAEYGTDLRGPTVCEVIDDAQVA 120 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 DV+ARLGPDPLR DA+PS AW+RI KSRRPIGALLMDQ V+AGVGNVYR+ELLFRHRIDP Sbjct 121 DVLARLGPDPLRKDADPSWAWARIAKSRRPIGALLMDQKVMAGVGNVYRSELLFRHRIDP 180 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 R G+ I E EF AAW DLV+LMKVG R GKI+VVRPEHDHG PSY RPRTYVYRRAG Sbjct 181 YRSGQRITEAEFSAAWTDLVALMKVGSRGGKIVVVRPEHDHGAPSYAAGRPRTYVYRRAG 240 Query 241 EPCRVCGGVIRTALLEGRNVFWCPVCQT 268 +PCRVCG + TA+LEGRNVFW P CQ Sbjct 241 DPCRVCGATVGTAVLEGRNVFWRPSCQA 268 >gi|336458282|gb|EGO37262.1| formamidopyrimidine-DNA glycosylase [Mycobacterium avium subsp. paratuberculosis S397] Length=268 Score = 434 bits (1115), Expect = 8e-120, Method: Compositional matrix adjust. Identities = 216/267 (81%), Positives = 239/267 (90%), Gaps = 0/267 (0%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLARLHQRR+AGAPV+VSSPQGRFA++A+ ++GRVLRR SAWGKHLFHHY G Sbjct 1 MPEGHTLHRLARLHQRRYAGAPVAVSSPQGRFAEAAAVVDGRVLRRTSAWGKHLFHHYAG 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 GP+VHVHLGLYG+F+EW P DG LP+P GQVRMRMVGA GTDLRGPTVCE ID+G+V+ Sbjct 61 GPIVHVHLGLYGSFSEWEPPGDGPLPDPVGQVRMRMVGAGHGTDLRGPTVCEVIDEGQVS 120 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 DV+ARLGPDPLR DA+PS AW RI KSRRPIGALLMDQTV+AGVGNVYR+ELLFRH IDP Sbjct 121 DVLARLGPDPLRDDADPSWAWQRIAKSRRPIGALLMDQTVMAGVGNVYRSELLFRHGIDP 180 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 R GR +GE EFDAAW DLV+LMKVGLRRGKIIVVRPEHD G PSY PDRPRTYVYRRAG Sbjct 181 YRAGRDVGEAEFDAAWTDLVALMKVGLRRGKIIVVRPEHDRGAPSYRPDRPRTYVYRRAG 240 Query 241 EPCRVCGGVIRTALLEGRNVFWCPVCQ 267 E CRVCG +RTA+LEGRNVFWCP CQ Sbjct 241 EACRVCGEPVRTAVLEGRNVFWCPTCQ 267 >gi|296170468|ref|ZP_06852056.1| DNA-formamidopyrimidine glycosylase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894939|gb|EFG74660.1| DNA-formamidopyrimidine glycosylase [Mycobacterium parascrofulaceum ATCC BAA-614] Length=266 Score = 432 bits (1111), Expect = 3e-119, Method: Compositional matrix adjust. Identities = 212/267 (80%), Positives = 232/267 (87%), Gaps = 2/267 (0%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLARLHQRRF APV+VSSPQGRFADSA ++GRVLRR S WGKHLFHHY G Sbjct 1 MPEGHTLHRLARLHQRRFGRAPVAVSSPQGRFADSA-VVDGRVLRRTSVWGKHLFHHYAG 59 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 GP+VHVHLGLYG FTEW R LPEP GQVRMRMVGAE+G DLRGPTVCE ID+G V+ Sbjct 60 GPIVHVHLGLYGAFTEWPR-AGAVLPEPVGQVRMRMVGAEYGADLRGPTVCEVIDEGRVS 118 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 DV+A+LGPDPLR+DA+PS AW RI KSRRP+GALLMDQTV+AGVGNVYR+ELLFRH IDP Sbjct 119 DVLAKLGPDPLRNDADPSWAWKRIAKSRRPVGALLMDQTVMAGVGNVYRSELLFRHGIDP 178 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 RPGR +GE EF AAW DLV+LMKVGLRRG+I+VVRPEHDHG P Y PDRPRTYVYRRAG Sbjct 179 FRPGRDVGEDEFYAAWTDLVALMKVGLRRGQIVVVRPEHDHGAPPYRPDRPRTYVYRRAG 238 Query 241 EPCRVCGGVIRTALLEGRNVFWCPVCQ 267 E CRVCG IRT +LEGRNVFWCP CQ Sbjct 239 EACRVCGDAIRTTVLEGRNVFWCPSCQ 265 >gi|120405005|ref|YP_954834.1| formamidopyrimidine-DNA glycolase [Mycobacterium vanbaalenii PYR-1] gi|119957823|gb|ABM14828.1| Formamidopyrimidine-DNA glycolase [Mycobacterium vanbaalenii PYR-1] Length=268 Score = 417 bits (1073), Expect = 6e-115, Method: Compositional matrix adjust. Identities = 204/268 (77%), Positives = 223/268 (84%), Gaps = 0/268 (0%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLAR HQRRF APV VSSPQGRF D A+A+NG V ++ASAWGKHLFHHY G Sbjct 1 MPEGHTLHRLARQHQRRFGRAPVIVSSPQGRFVDGAAAVNGHVFKKASAWGKHLFHHYQG 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 G VVHVHLGLYGTFTEW P D P P GQVRMRM+GAE+GTDLRGPTVCE I++ +VA Sbjct 61 GRVVHVHLGLYGTFTEWPLPDDRTQPIPVGQVRMRMLGAEYGTDLRGPTVCEVIEEPDVA 120 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 DVVARLGPDPLRSDA+P AW RI+KSRRPIGALLMDQTVIAGVGNVYR+ELLFRHR DP Sbjct 121 DVVARLGPDPLRSDADPELAWRRISKSRRPIGALLMDQTVIAGVGNVYRSELLFRHRTDP 180 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 RPG + EF W DLV+LMKVG+RRGKI+VV PEHDHG PSY RPRTYVYRRAG Sbjct 181 FRPGTTVTSDEFAEMWTDLVALMKVGVRRGKIVVVAPEHDHGAPSYREGRPRTYVYRRAG 240 Query 241 EPCRVCGGVIRTALLEGRNVFWCPVCQT 268 +PCRVC IRT LEGRN+FWCP CQT Sbjct 241 DPCRVCATPIRTVELEGRNLFWCPACQT 268 >gi|118473590|ref|YP_888944.1| formamidopyrimidine-DNA glycosylase [Mycobacterium smegmatis str. MC2 155] gi|118174877|gb|ABK75773.1| putative formamidopyrimidine-DNA glycosylase [Mycobacterium smegmatis str. MC2 155] Length=268 Score = 413 bits (1061), Expect = 1e-113, Method: Compositional matrix adjust. Identities = 196/268 (74%), Positives = 225/268 (84%), Gaps = 0/268 (0%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLARLHQRRF V VSSPQGRFAD A+A++G++ +RA+AWGKHLFHHY G Sbjct 1 MPEGHTLHRLARLHQRRFGRTAVVVSSPQGRFADGAAAVSGQIFKRATAWGKHLFHHYDG 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 G VVH+HLGLYG FTEW P + LP P GQVRMR++GA++GTDLRGPTVCE I + E+ Sbjct 61 GRVVHIHLGLYGAFTEWPVPAELALPLPVGQVRMRIIGAQYGTDLRGPTVCELITEPEIV 120 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 DV+A+LGPDPLR DA+ S AW RITKSRRPIGALLMDQTV+AGVGNVYR+ELLFRH IDP Sbjct 121 DVIAKLGPDPLRPDADASLAWKRITKSRRPIGALLMDQTVMAGVGNVYRSELLFRHGIDP 180 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 PG + EFDA W DLV+LMKVG+RRGKI+VVRPEHDHG PSY RPRTYVYRRAG Sbjct 181 YLPGTQLDAAEFDAMWTDLVALMKVGVRRGKIVVVRPEHDHGAPSYRTGRPRTYVYRRAG 240 Query 241 EPCRVCGGVIRTALLEGRNVFWCPVCQT 268 EPCR+CG +RTA LEGRN+FWCP CQ+ Sbjct 241 EPCRICGTPVRTAELEGRNLFWCPTCQS 268 >gi|145223169|ref|YP_001133847.1| formamidopyrimidine-DNA glycosylase [Mycobacterium gilvum PYR-GCK] gi|145215655|gb|ABP45059.1| Formamidopyrimidine-DNA glycolase [Mycobacterium gilvum PYR-GCK] Length=264 Score = 407 bits (1045), Expect = 1e-111, Method: Compositional matrix adjust. Identities = 197/268 (74%), Positives = 223/268 (84%), Gaps = 4/268 (1%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLAR HQRRF APV VSSPQGRF D A+A+NGRVL++A+AWGKHLFHHY G Sbjct 1 MPEGHTLHRLARQHQRRFGRAPVIVSSPQGRFVDGATAVNGRVLKKATAWGKHLFHHYDG 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 G VVHVHLGLYG+FTEW+ P P GQVRMRMVG E+G DLRGPTVCE ID+ E+A Sbjct 61 GRVVHVHLGLYGSFTEWSLPP----LLPVGQVRMRMVGTEYGADLRGPTVCEVIDEPEIA 116 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 D+VARLGPDPLR DA+PS AW RI+KSRRPIGALLMDQ+VIAG+GNVYR+ELLFRHR DP Sbjct 117 DIVARLGPDPLRPDADPSLAWRRISKSRRPIGALLMDQSVIAGIGNVYRSELLFRHRTDP 176 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 RPG + EFDA W DLV+LMKVG+RRGKI+VV PEHDHG PSY RPRTYVYRRAG Sbjct 177 FRPGTSVTADEFDALWTDLVALMKVGVRRGKIVVVLPEHDHGAPSYREGRPRTYVYRRAG 236 Query 241 EPCRVCGGVIRTALLEGRNVFWCPVCQT 268 +PCRVC +RT +E RN+FWCP CQ+ Sbjct 237 DPCRVCSTPVRTVEMEARNLFWCPNCQS 264 >gi|333990084|ref|YP_004522698.1| formamidopyrimidine-DNA glycosylase [Mycobacterium sp. JDM601] gi|333486052|gb|AEF35444.1| formamidopyrimidine-DNA glycosylase [Mycobacterium sp. JDM601] Length=267 Score = 405 bits (1041), Expect = 3e-111, Method: Compositional matrix adjust. Identities = 191/268 (72%), Positives = 224/268 (84%), Gaps = 1/268 (0%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGH LHRLARLHQRRF GAPV+VSSPQGRF A+A++GRVL A AWGKHLFHHY G Sbjct 1 MPEGHILHRLARLHQRRFGGAPVAVSSPQGRFEAGAAAIDGRVLTGAEAWGKHLFHHYAG 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 GP+V VHLG+YG FTE+ +DG +P+P GQVRMRM+G ++GTDLRGP CE +D+ A Sbjct 61 GPIVRVHLGIYGHFTEF-HLSDGGIPDPVGQVRMRMIGVDYGTDLRGPAACEVVDEAFAA 119 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 DV+ARLGPDPLR DA+P+ A+ RI KSRR IGALLMDQ+V+AGVGNVYR+E+LFRHRIDP Sbjct 120 DVIARLGPDPLRGDADPALAFKRIGKSRRTIGALLMDQSVLAGVGNVYRSEVLFRHRIDP 179 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 RPG IGE EF+A W DLV+LMKVGLRRG I+VVRPE DHG P+Y P +PRTYVYRRAG Sbjct 180 FRPGTAIGEAEFNAVWTDLVALMKVGLRRGNIVVVRPEDDHGAPAYAPGKPRTYVYRRAG 239 Query 241 EPCRVCGGVIRTALLEGRNVFWCPVCQT 268 +PCR+CG +RTA LE RNVFWCP CQ+ Sbjct 240 DPCRLCGNTVRTAELEARNVFWCPSCQS 267 >gi|315443627|ref|YP_004076506.1| formamidopyrimidine-DNA glycosylase [Mycobacterium sp. Spyr1] gi|315261930|gb|ADT98671.1| formamidopyrimidine-DNA glycosylase [Mycobacterium sp. Spyr1] Length=264 Score = 405 bits (1040), Expect = 4e-111, Method: Compositional matrix adjust. Identities = 197/268 (74%), Positives = 221/268 (83%), Gaps = 4/268 (1%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLAR HQRRF APV VSSPQGRF D A+A+NGRVL++A+AWGKHLFHHY G Sbjct 1 MPEGHTLHRLARQHQRRFGRAPVIVSSPQGRFVDGATAVNGRVLKKATAWGKHLFHHYDG 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 G VVHVHLGLYG+FTEW P P GQVRMRMVG E+G DLRGPTVCE ID+ E+A Sbjct 61 GRVVHVHLGLYGSFTEWPLPPL----LPVGQVRMRMVGTEYGADLRGPTVCEVIDEPEIA 116 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 D+VARLGPDPLR DA+PS AW RI KSRRPIGALLMDQ+VIAG+GNVYR+ELLFRHR DP Sbjct 117 DIVARLGPDPLRPDADPSLAWRRINKSRRPIGALLMDQSVIAGIGNVYRSELLFRHRTDP 176 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 RPG + EFDA W DLV+LMKVG+RRGKI+VV PEHDHG PSY RPRTYVYRRAG Sbjct 177 FRPGTSVTANEFDALWTDLVALMKVGVRRGKIVVVLPEHDHGAPSYREGRPRTYVYRRAG 236 Query 241 EPCRVCGGVIRTALLEGRNVFWCPVCQT 268 +PCRVC +RT +E RN+FWCP CQ+ Sbjct 237 DPCRVCSTPVRTVEMEARNLFWCPNCQS 264 >gi|108800564|ref|YP_640761.1| formamidopyrimidine-DNA glycosylase [Mycobacterium sp. MCS] gi|119869703|ref|YP_939655.1| formamidopyrimidine-DNA glycosylase [Mycobacterium sp. KMS] gi|108770983|gb|ABG09705.1| Formamidopyrimidine-DNA glycolase [Mycobacterium sp. MCS] gi|119695792|gb|ABL92865.1| Formamidopyrimidine-DNA glycolase [Mycobacterium sp. KMS] Length=268 Score = 389 bits (998), Expect = 3e-106, Method: Compositional matrix adjust. Identities = 185/267 (70%), Positives = 217/267 (82%), Gaps = 0/267 (0%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLARLHQ+R+ G V VSSPQGRFA+ A+ ++GR ASAWGKHLFHHY G Sbjct 1 MPEGHTLHRLARLHQKRYKGQRVRVSSPQGRFAEGAAMVDGRTFTGASAWGKHLFHHYRG 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 G ++HVHLGLYG F E+A D P+P GQVRMRMVGA GTDLRGPT CE +D+ +V+ Sbjct 61 GRIIHVHLGLYGRFDEFAVSADDPPPDPVGQVRMRMVGAGHGTDLRGPTACEIVDEAQVS 120 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 D++ARLGPDPLR DA+P+ AW+R+ +SRRP+GALLMDQTVIAGVGNVYR+ELL+RHRIDP Sbjct 121 DILARLGPDPLRRDADPAPAWTRLNRSRRPVGALLMDQTVIAGVGNVYRSELLYRHRIDP 180 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 R G + EFDA W DLV LMKVG+RRGKI+ VRPE DHG PSY RPRTYVYRRA Sbjct 181 YRLGTNLEPGEFDAMWTDLVELMKVGVRRGKIVTVRPEDDHGAPSYRTGRPRTYVYRRAL 240 Query 241 EPCRVCGGVIRTALLEGRNVFWCPVCQ 267 EPCR+CG + TA+LEGRN+FWCP CQ Sbjct 241 EPCRICGTPVNTAVLEGRNLFWCPTCQ 267 >gi|126436180|ref|YP_001071871.1| formamidopyrimidine-DNA glycosylase [Mycobacterium sp. JLS] gi|126235980|gb|ABN99380.1| Formamidopyrimidine-DNA glycolase [Mycobacterium sp. JLS] Length=268 Score = 387 bits (993), Expect = 1e-105, Method: Compositional matrix adjust. Identities = 184/267 (69%), Positives = 216/267 (81%), Gaps = 0/267 (0%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLARLHQ+R+ G V VSSPQGRFA+ A+ ++GR ASAWGKHLFHHY G Sbjct 1 MPEGHTLHRLARLHQKRYKGQRVRVSSPQGRFAEGAAMVDGRTFTGASAWGKHLFHHYRG 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 G ++HVHLGLYG F E+A D P+P GQVRMRMVG GTDLRGPT CE +D+ +V+ Sbjct 61 GRIIHVHLGLYGRFDEFAVSADDPPPDPVGQVRMRMVGDGHGTDLRGPTACEIVDEAQVS 120 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 D++ARLGPDPLR DA+P+ AW+R+ +SRRP+GALLMDQTVIAGVGNVYR+ELL+RHRIDP Sbjct 121 DILARLGPDPLRRDADPAPAWTRLNRSRRPVGALLMDQTVIAGVGNVYRSELLYRHRIDP 180 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 R G + EFDA W DLV LMKVG+RRGKI+ VRPE DHG PSY RPRTYVYRRA Sbjct 181 YRLGTNLEPGEFDAMWTDLVELMKVGVRRGKIVTVRPEDDHGAPSYRTGRPRTYVYRRAL 240 Query 241 EPCRVCGGVIRTALLEGRNVFWCPVCQ 267 EPCR+CG + TA+LEGRN+FWCP CQ Sbjct 241 EPCRICGTPVNTAVLEGRNLFWCPTCQ 267 >gi|226360505|ref|YP_002778283.1| DNA glycosylase [Rhodococcus opacus B4] gi|226238990|dbj|BAH49338.1| putative DNA glycosylase [Rhodococcus opacus B4] Length=265 Score = 380 bits (976), Expect = 1e-103, Method: Compositional matrix adjust. Identities = 186/267 (70%), Positives = 215/267 (81%), Gaps = 4/267 (1%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLARLHQRRFAGAPV V SPQGRFA+ A+ ++GRVL ++ AWGKHL+HHY Sbjct 1 MPEGHTLHRLARLHQRRFAGAPVRVLSPQGRFAEDAALVDGRVLVKSEAWGKHLWHHYES 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 G VVHVHLGLYG FTE A P + P GQVRMRMVGAEFGTDLRGPT CE + +VA Sbjct 61 GLVVHVHLGLYGAFTEAAVPME----PPVGQVRMRMVGAEFGTDLRGPTACEVLHPPQVA 116 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 + ARLGPDPLR DA+P AW RI+ S+ PIGALLMDQ VIAGVGNVYR E+LFRH IDP Sbjct 117 AIEARLGPDPLRKDADPDKAWKRISASKTPIGALLMDQAVIAGVGNVYRAEVLFRHGIDP 176 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 RPGRG+ E+DA W DLV+LMKVG+RRG++ VVRPE DHG P+Y DRPRTYVYRRAG Sbjct 177 ARPGRGLSRDEWDALWADLVALMKVGVRRGRMHVVRPEDDHGDPAYAKDRPRTYVYRRAG 236 Query 241 EPCRVCGGVIRTALLEGRNVFWCPVCQ 267 PCR+CG + A+++GRN+FWCP CQ Sbjct 237 SPCRICGTPVAHAVMKGRNLFWCPSCQ 263 >gi|111018385|ref|YP_701357.1| DNA-formamidopyrimidine glycosylase [Rhodococcus jostii RHA1] gi|110817915|gb|ABG93199.1| probable DNA-formamidopyrimidine glycosylase [Rhodococcus jostii RHA1] Length=265 Score = 376 bits (965), Expect = 2e-102, Method: Compositional matrix adjust. Identities = 182/267 (69%), Positives = 214/267 (81%), Gaps = 4/267 (1%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLARLHQRRFAGAPV V SPQGRF++ A+ ++GRVL ++ AWGKHL+HHY Sbjct 1 MPEGHTLHRLARLHQRRFAGAPVRVLSPQGRFSEDAALVDGRVLVKSEAWGKHLWHHYES 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 G VVHVHLGLYG FTE A P + P GQVRMRMVGAEFGTDLRGPT CE + +VA Sbjct 61 GLVVHVHLGLYGAFTESAVPME----PPVGQVRMRMVGAEFGTDLRGPTACEVLHPPQVA 116 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 + ARLGPDPLR DA+P AW RI+ S+ PIGALLMDQ VIAG+GNVYR E+LFRH I+P Sbjct 117 AIEARLGPDPLRKDADPDKAWKRISASKTPIGALLMDQAVIAGIGNVYRAEVLFRHGINP 176 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 RPGR + E+DA W DLV+LMKVG+RRGK+ VVRPE DHG P+Y DRPRTYVYRRAG Sbjct 177 DRPGRALSRDEWDALWADLVALMKVGVRRGKMHVVRPEDDHGDPAYAKDRPRTYVYRRAG 236 Query 241 EPCRVCGGVIRTALLEGRNVFWCPVCQ 267 PCR+CG + ++++GRN+FWCP CQ Sbjct 237 SPCRICGTPVTHSVMKGRNLFWCPSCQ 263 >gi|312140366|ref|YP_004007702.1| DNA-formamidopyrimidine glycosylase [Rhodococcus equi 103S] gi|311889705|emb|CBH49022.1| DNA-formamidopyrimidine glycosylase [Rhodococcus equi 103S] Length=265 Score = 375 bits (964), Expect = 3e-102, Method: Compositional matrix adjust. Identities = 183/268 (69%), Positives = 212/268 (80%), Gaps = 4/268 (1%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLARLHQRRFAG+PV VSSPQGRFA+ A+ ++GRVL R+ AWGKHL+HHY Sbjct 1 MPEGHTLHRLARLHQRRFAGSPVRVSSPQGRFAEDAALIDGRVLVRSDAWGKHLWHHYEN 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 G VVHVHLGLYG FTE P L P GQVRMRM G EFGTDLRGPT CE + + +VA Sbjct 61 GLVVHVHLGLYGKFTESPLP----LEPPVGQVRMRMAGTEFGTDLRGPTACEVLHEPQVA 116 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 + ARLGPDPLR+DA+P AW+RI+KS+ PIGALLMDQ V+AGVGNVYR E+LFRH I P Sbjct 117 AIEARLGPDPLRADADPDRAWARISKSQTPIGALLMDQAVLAGVGNVYRAEILFRHGIHP 176 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 +RPG+ + EFDA W DLV LM VG+RRGK+ VVRPE DHG PSY DRPRTY YRRAG Sbjct 177 ERPGKNVSRAEFDAMWADLVDLMNVGVRRGKMHVVRPEDDHGDPSYAKDRPRTYTYRRAG 236 Query 241 EPCRVCGGVIRTALLEGRNVFWCPVCQT 268 CR+CG I A+++GRN+FWCP CQ Sbjct 237 SACRICGTPIAHAVMKGRNLFWCPGCQV 264 >gi|325676024|ref|ZP_08155707.1| DNA-formamidopyrimidine glycosylase [Rhodococcus equi ATCC 33707] gi|325553262|gb|EGD22941.1| DNA-formamidopyrimidine glycosylase [Rhodococcus equi ATCC 33707] Length=265 Score = 374 bits (959), Expect = 1e-101, Method: Compositional matrix adjust. Identities = 182/268 (68%), Positives = 211/268 (79%), Gaps = 4/268 (1%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLARLHQRRFAG+PV VSSPQGRFA+ A+ ++GRVL R+ AWGKHL+HHY Sbjct 1 MPEGHTLHRLARLHQRRFAGSPVRVSSPQGRFAEDAALIDGRVLVRSDAWGKHLWHHYEN 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 G VVHVHLGLYG FTE P L P GQVRMRM G EFGTDLRGPT CE + + +VA Sbjct 61 GLVVHVHLGLYGKFTESPLP----LEPPVGQVRMRMAGTEFGTDLRGPTACEVLHEPQVA 116 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 + ARLGPDPLR+DA+P AW+RI+KS+ PIGALLMDQ V+AGVGNVYR E+LFRH I P Sbjct 117 AIEARLGPDPLRADADPDRAWARISKSQTPIGALLMDQAVLAGVGNVYRAEILFRHGIHP 176 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 +RPG+ + EFDA W DLV LM VG+RRGK+ VVRPE DHG PSY DRPRTY YRRAG Sbjct 177 ERPGKNVSRAEFDAMWADLVDLMNVGVRRGKMHVVRPEDDHGDPSYAKDRPRTYTYRRAG 236 Query 241 EPCRVCGGVIRTALLEGRNVFWCPVCQT 268 CR+CG I +++GRN+FWCP CQ Sbjct 237 SACRICGTPIAHVVMKGRNLFWCPGCQV 264 >gi|169628665|ref|YP_001702314.1| formamidopyrimidine-DNA glycosylase [Mycobacterium abscessus ATCC 19977] gi|169240632|emb|CAM61660.1| Probable formamidopyrimidine-DNA glycolase [Mycobacterium abscessus] Length=265 Score = 356 bits (914), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 180/267 (68%), Positives = 205/267 (77%), Gaps = 4/267 (1%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLARLHQRRFAGAPVSVSSPQGRF + A+A+NGR +A AWGKHLFH Y Sbjct 1 MPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFTEGAAAVNGRTFVQAHAWGKHLFHDYGP 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 VVHVHLGLYG FTE P + P GQVRMR+ GAEFGTDLRG T CE ID +V Sbjct 61 VGVVHVHLGLYGAFTELPVP----MGLPVGQVRMRIEGAEFGTDLRGATACELIDAPQVD 116 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 ++ARLGPDPLR ++P+SA+ RI KS RPIGALLMDQ +IAGVGNVYR+E+LFR RIDP Sbjct 117 AILARLGPDPLRPRSDPASAFERIAKSHRPIGALLMDQKIIAGVGNVYRSEVLFRRRIDP 176 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 R G + + A W+DLV M+VGLR GKI+ V PEHD G PSY PDRPRTYVYRRAG Sbjct 177 YREGSRLDPEQLTALWSDLVDRMRVGLRVGKIVTVDPEHDCGDPSYAPDRPRTYVYRRAG 236 Query 241 EPCRVCGGVIRTALLEGRNVFWCPVCQ 267 PCRVCG I TA ++ RN+FWCP CQ Sbjct 237 APCRVCGTPILTAEMDARNLFWCPSCQ 263 >gi|226307305|ref|YP_002767265.1| DNA glycosylase [Rhodococcus erythropolis PR4] gi|226186422|dbj|BAH34526.1| putative DNA glycosylase [Rhodococcus erythropolis PR4] Length=265 Score = 356 bits (913), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 176/268 (66%), Positives = 206/268 (77%), Gaps = 4/268 (1%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLARLH R+F G+PV V SPQGRFA+ A ++G VL + AWGKHL+H Y Sbjct 1 MPEGHTLHRLARLHARKFVGSPVRVLSPQGRFAEDARLVDGHVLTSSDAWGKHLWHTYDN 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 G VHVHLGLYG FT+ A P + EP GQVRMRMVGA+FGTDLRGPT CE + +VA Sbjct 61 GLTVHVHLGLYGKFTDSALPME----EPVGQVRMRMVGADFGTDLRGPTACEVLLPPQVA 116 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 + ARLGPDPLR A+P AW RI+KS++ IGALLMDQ V+AGVGNVYR ELLFRH I P Sbjct 117 AIEARLGPDPLRRGADPHQAWVRISKSKKAIGALLMDQAVLAGVGNVYRAELLFRHGISP 176 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 +RPG I E+ A W DLV LMKVG+RRGK+ VVR EHD+G P+Y DRPRTYVYRRAG Sbjct 177 ERPGNLISHDEWTAMWADLVELMKVGVRRGKMHVVRAEHDNGDPAYAKDRPRTYVYRRAG 236 Query 241 EPCRVCGGVIRTALLEGRNVFWCPVCQT 268 PCRVCG I +++E RN+FWCPVCQ+ Sbjct 237 SPCRVCGTPILHSVMEARNLFWCPVCQS 264 >gi|229493198|ref|ZP_04386990.1| formamidopyrimidine-DNA glycosylase [Rhodococcus erythropolis SK121] gi|229319929|gb|EEN85758.1| formamidopyrimidine-DNA glycosylase [Rhodococcus erythropolis SK121] Length=265 Score = 356 bits (913), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 175/268 (66%), Positives = 207/268 (78%), Gaps = 4/268 (1%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLARLH R+F G+PV V SPQGRFA+ A ++G VL + AWGKHL+H Y Sbjct 1 MPEGHTLHRLARLHARKFVGSPVRVLSPQGRFAEDARLVDGHVLTSSDAWGKHLWHTYDN 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 G VHVHLGLYG FT+ A P + EP GQVRMRMVGA+FGTDLRGPT CE + +VA Sbjct 61 GLTVHVHLGLYGKFTDAALPME----EPVGQVRMRMVGADFGTDLRGPTACEVLLPPQVA 116 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 + ARLGPDPLR DA+P AW RI+KS+ IGALLMDQ V+AGVGNVYR ELLFRH I+P Sbjct 117 AIEARLGPDPLRRDADPEKAWLRISKSKTAIGALLMDQAVLAGVGNVYRAELLFRHGINP 176 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 +RPG + E+ A W DLV LMKVG+RRGK+ VVR EHD+G P+Y DRPRTYVYRRAG Sbjct 177 ERPGNLVSHGEWTAMWADLVELMKVGVRRGKMHVVRAEHDNGDPAYAKDRPRTYVYRRAG 236 Query 241 EPCRVCGGVIRTALLEGRNVFWCPVCQT 268 PCRVCG I ++++ RN+FWCPVCQ+ Sbjct 237 SPCRVCGTPILHSVMKARNLFWCPVCQS 264 >gi|54023295|ref|YP_117537.1| putative formamidopyrimidine-DNA glycosylase [Nocardia farcinica IFM 10152] gi|54014803|dbj|BAD56173.1| putative formamidopyrimidine-DNA glycosylase [Nocardia farcinica IFM 10152] Length=265 Score = 341 bits (875), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 173/267 (65%), Positives = 198/267 (75%), Gaps = 4/267 (1%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLA HQR FAG PV VSSPQGRFA+ A+ ++GRVL R A GKHL HHY Sbjct 1 MPEGHTLHRLAERHQRVFAGGPVRVSSPQGRFAEGAALVDGRVLARCEAHGKHLLHHYEH 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 GPVVHVHLGLYG F + P + P G+VRMRMVGA GTDLRGP CE + EV Sbjct 61 GPVVHVHLGLYGKFYDAPVP----MGPPVGEVRMRMVGATEGTDLRGPAACEVLTPPEVD 116 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 ++ RLGPDPLR+DA+P AW RI +SRRPIGALLMDQ V+AGVGNVYR E+LFRH I P Sbjct 117 ALLERLGPDPLRADADPDRAWQRIRRSRRPIGALLMDQRVLAGVGNVYRAEVLFRHGISP 176 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 RPG + E+ A W DLV LM +G+ G++ VVRPEHDHG PSY PDRPRTYVYRR G Sbjct 177 YRPGVDLDAAEWKAIWADLVDLMPIGVETGRMHVVRPEHDHGEPSYAPDRPRTYVYRRPG 236 Query 241 EPCRVCGGVIRTALLEGRNVFWCPVCQ 267 CRVCG I A+L+GRN+FWCP CQ Sbjct 237 AGCRVCGSPIAHAVLDGRNLFWCPTCQ 263 >gi|343927532|ref|ZP_08767002.1| putative DNA glycosylase [Gordonia alkanivorans NBRC 16433] gi|343762520|dbj|GAA13928.1| putative DNA glycosylase [Gordonia alkanivorans NBRC 16433] Length=267 Score = 333 bits (855), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 165/270 (62%), Positives = 198/270 (74%), Gaps = 7/270 (2%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLAR QR F G V V+SPQGRFAD A+A++G A AWGKHL H Y Sbjct 1 MPEGHTLHRLARRQQRLFGGRRVRVTSPQGRFADGAAAVDGMTFHAAEAWGKHLLHRYRD 60 Query 61 G---PVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDG 117 G +VH+HLGLYG FTE P LPEP GQVR+R+ + GTDLRGPT CE Sbjct 61 GRTEQMVHIHLGLYGAFTELTAP----LPEPVGQVRLRIETEDTGTDLRGPTACEIYHPV 116 Query 118 EVADVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHR 177 ++ ++ARLGPDPLR DA+P AW+ +++S RPIGALLMDQ VIAG+GNVYR E+LFR Sbjct 117 DLDALIARLGPDPLRRDADPERAWAAMSRSSRPIGALLMDQKVIAGIGNVYRAEVLFRAG 176 Query 178 IDPQRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYR 237 IDP RPG+ + EFD W DLV+LMKVG+RRG+I V+RPE DHG P+Y +RPRTYVYR Sbjct 177 IDPMRPGKRLLRTEFDEMWLDLVALMKVGVRRGRIHVIRPEDDHGAPAYAANRPRTYVYR 236 Query 238 RAGEPCRVCGGVIRTALLEGRNVFWCPVCQ 267 RAGEPCR+CG + A LE R ++WCPVCQ Sbjct 237 RAGEPCRICGTPVLLAELEARKLYWCPVCQ 266 >gi|262201979|ref|YP_003273187.1| DNA-(apurinic or apyrimidinic site) lyase [Gordonia bronchialis DSM 43247] gi|262085326|gb|ACY21294.1| DNA-(apurinic or apyrimidinic site) lyase [Gordonia bronchialis DSM 43247] Length=267 Score = 331 bits (849), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 166/271 (62%), Positives = 194/271 (72%), Gaps = 7/271 (2%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLAR H R G V+V+SPQGRFAD A+A++G RA AWGKHL H Y Sbjct 1 MPEGHTLHRLARRHTRLLGGRRVTVNSPQGRFADGAAAVDGMTFGRADAWGKHLVHRYRD 60 Query 61 G---PVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDG 117 G ++H+HLGLYG FTE P D +P GQVR+R+ E G DLRGPT CE Sbjct 61 GRREQLIHIHLGLYGAFTEAPVPMD----DPVGQVRLRIESDEIGIDLRGPTACELYGPA 116 Query 118 EVADVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHR 177 ++ +VARLGPDPLR DA P AW+ I SRRPIGALLMDQ V+AGVGNVYR E+LFR Sbjct 117 DLEALVARLGPDPLRRDAKPVDAWTAIRSSRRPIGALLMDQKVVAGVGNVYRAEVLFRAG 176 Query 178 IDPQRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYR 237 IDP RPG I EFD W DLV LM++G+RRG+I V+RP+ DHG PSY PDRPRTYVYR Sbjct 177 IDPMRPGTIITRAEFDGLWADLVDLMRIGVRRGRIHVMRPDDDHGAPSYAPDRPRTYVYR 236 Query 238 RAGEPCRVCGGVIRTALLEGRNVFWCPVCQT 268 RAGE CR+CG + A LE R ++WCPVCQT Sbjct 237 RAGEACRICGTPVLIAELEARKLYWCPVCQT 267 >gi|296139126|ref|YP_003646369.1| DNA-(apurinic or apyrimidinic site) lyase [Tsukamurella paurometabola DSM 20162] gi|296027260|gb|ADG78030.1| DNA-(apurinic or apyrimidinic site) lyase [Tsukamurella paurometabola DSM 20162] Length=267 Score = 328 bits (840), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 168/268 (63%), Positives = 202/268 (76%), Gaps = 1/268 (0%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLA H RRF G V V+SPQGRFA A L+GR A AWGKHL+H Y G Sbjct 1 MPEGHTLHRLALDHDRRFGGETVRVASPQGRFAAEAKRLDGREFLGADAWGKHLWHRYDG 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 G VHVHLGLYG+F ++ DG P P GQVRMR+VG GTDLRGPT C + + ++ Sbjct 61 GLTVHVHLGLYGSFADFEL-LDGAPPAPVGQVRMRIVGPRDGTDLRGPTACHLVSEEQID 119 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 +V+ARLGPDPLR+DA+P AW RI++SRRPIGALLMDQ V+AGVGNVYR E+L+R +DP Sbjct 120 EVLARLGPDPLRADADPDPAWRRISRSRRPIGALLMDQKVVAGVGNVYRAEVLYRAGLDP 179 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAG 240 R GR +G +FD W DLV+LM +G+ RG++ VVR E DHG PSY PDRPRTYVYRRAG Sbjct 180 HREGRALGREDFDGIWADLVALMPIGVERGRMHVVRAEDDHGAPSYAPDRPRTYVYRRAG 239 Query 241 EPCRVCGGVIRTALLEGRNVFWCPVCQT 268 EPCRVC +RT ++E RN++WCP CQT Sbjct 240 EPCRVCRTPVRTEVMEARNLYWCPTCQT 267 >gi|134097938|ref|YP_001103599.1| formamidopyrimidine-DNA glycosylase [Saccharopolyspora erythraea NRRL 2338] gi|133910561|emb|CAM00674.1| formamidopyrimidine-DNA glycosylase [Saccharopolyspora erythraea NRRL 2338] Length=269 Score = 312 bits (800), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 162/272 (60%), Positives = 191/272 (71%), Gaps = 8/272 (2%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLA+LHQ+R+ GA V V SPQGRFA SA+ L+G VLRRA A GKHLFH + Sbjct 1 MPEGHTLHRLAQLHQKRYGGAAVRVGSPQGRFAASAALLDGSVLRRAEAHGKHLFHFHGP 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 VVHVHLGLYGTFTE P D EP GQVRMR+VG GTDLRGPT CE + D EV Sbjct 61 DRVVHVHLGLYGTFTESELPMD----EPRGQVRMRIVGDTHGTDLRGPTACELLTDAEVE 116 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 + RLGPDPLR+DA+P AW RI++SR I ALL+DQ V+AG GNVYR E+LFRH I P Sbjct 117 ALRDRLGPDPLRADADPDRAWQRISRSRTSIAALLLDQKVLAGAGNVYRAEVLFRHGIPP 176 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPR----TYVY 236 + PGR +G +D W+DLV LM G+R G+I VRPEH+ P + R YVY Sbjct 177 RTPGRDLGRERWDLVWSDLVELMAAGVRAGRIDTVRPEHEPEATGRAPRQDRHGGEVYVY 236 Query 237 RRAGEPCRVCGGVIRTALLEGRNVFWCPVCQT 268 RRAG+PC VCG + TA L GR ++WCP CQ Sbjct 237 RRAGQPCLVCGTEVATADLVGRKLYWCPSCQA 268 >gi|319947983|ref|ZP_08022160.1| DNA-formamidopyrimidine glycosylase [Dietzia cinnamea P4] gi|319438329|gb|EFV93272.1| DNA-formamidopyrimidine glycosylase [Dietzia cinnamea P4] Length=278 Score = 312 bits (799), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 163/273 (60%), Positives = 188/273 (69%), Gaps = 7/273 (2%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLARLH FAG PV VSSPQGRFAD ++GR RA+A GKHLFHHY G Sbjct 1 MPEGHTLHRLARLHTEYFAGGPVRVSSPQGRFADHV-VVDGRHFDRATAVGKHLFHHYEG 59 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFG-----TDLRGPTVCESID 115 G VHVHLGLYG F P P P GQVRMR+ G DLRGPT CE I Sbjct 60 GLAVHVHLGLYGFFDTHLVPEGQDPPAPVGQVRMRVGAIADGAPAHWVDLRGPTRCEVIA 119 Query 116 DGEVADVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFR 175 + EV V RLGPDPL DA P AW+RI +S RPIGALLMDQ V+AGVGNVYR E+LFR Sbjct 120 EAEVGAVRDRLGPDPLDPDAEPERAWARIARSARPIGALLMDQKVLAGVGNVYRAEVLFR 179 Query 176 HRIDPQRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHG-LPSYLPDRPRTY 234 H IDP RPG+ + +FDA W+DLV+LM++G+R G I +RPEHDHG +P DRPR Y Sbjct 180 HGIDPFRPGKDLDRAQFDAVWDDLVALMEIGVRTGAIHTIRPEHDHGDVPRRGADRPRNY 239 Query 235 VYRRAGEPCRVCGGVIRTALLEGRNVFWCPVCQ 267 VY+R G CRVCG +R +E R ++WCP CQ Sbjct 240 VYQRDGWECRVCGDQVRQQAMEARTLYWCPTCQ 272 >gi|302529039|ref|ZP_07281381.1| formamidopyrimidine-DNA glycosylase [Streptomyces sp. AA4] gi|302437934|gb|EFL09750.1| formamidopyrimidine-DNA glycosylase [Streptomyces sp. AA4] Length=269 Score = 304 bits (778), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 160/274 (59%), Positives = 186/274 (68%), Gaps = 14/274 (5%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLARLHQRR+AG PV+VSSPQGRFA A L+G+VL A A+GKHLFHHY Sbjct 1 MPEGHTLHRLARLHQRRYAGGPVAVSSPQGRFAAEAGKLDGQVLVSAEAYGKHLFHHYGP 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 VHVHLGLYGTF E P P GQVRMR+VG TDLRGPT CE +D +V Sbjct 61 LGTVHVHLGLYGTFGEAPLPETA----PVGQVRMRLVGRTHWTDLRGPTRCELLDPAQVD 116 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 + ARLGPDPLR DA P AW RI++SR I ALLMDQ V+AGVGNVYR E+LFRH I P Sbjct 117 AIKARLGPDPLRRDAKPDRAWERISRSRTTIAALLMDQAVLAGVGNVYRAEVLFRHGISP 176 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPR-------T 233 PGR + +DA W DLV+LM+ G+R G+I V PEH LP+ + PR Sbjct 177 MVPGRSLDRALWDAMWADLVTLMRAGVRVGRIDTVAPEH---LPAAMGRAPREDRHGGEV 233 Query 234 YVYRRAGEPCRVCGGVIRTALLEGRNVFWCPVCQ 267 YVYRRAG PC +CG + L RN++WCP CQ Sbjct 234 YVYRRAGMPCLICGTPVAQKELAARNLYWCPACQ 267 >gi|300788645|ref|YP_003768936.1| endonuclease VIII [Amycolatopsis mediterranei U32] gi|299798159|gb|ADJ48534.1| endonuclease VIII [Amycolatopsis mediterranei U32] gi|340530257|gb|AEK45462.1| endonuclease VIII [Amycolatopsis mediterranei S699] Length=268 Score = 301 bits (772), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 158/274 (58%), Positives = 190/274 (70%), Gaps = 14/274 (5%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLARLH+RRFAGAPV+VSSPQGRFA AS L+G+V A A+GKHLFH Y Sbjct 1 MPEGHTLHRLARLHKRRFAGAPVAVSSPQGRFAAEASRLDGQVFAGAEAYGKHLFHDYGS 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 +VH+HLGLYGTF E P PEP GQVR+R+ G TDLRGPT CE +D G+ Sbjct 61 HGIVHIHLGLYGTFGESPLPA----PEPVGQVRLRLAGRTHWTDLRGPTRCELLDPGQAD 116 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 + ARLGPDPLR DA P AW+R+++S+ I ALLMDQ V+AGVGNVYR E+LFRH + P Sbjct 117 AIKARLGPDPLRRDAKPELAWARVSRSKTSIAALLMDQAVLAGVGNVYRAEVLFRHGVAP 176 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPR-------T 233 PGR + P +D W DLV LM+ G+R G+I VRPEH LP + R Sbjct 177 LTPGRALDRPLWDDLWADLVILMRDGVRVGRIDTVRPEH---LPEAMGRAARVDRHGGEV 233 Query 234 YVYRRAGEPCRVCGGVIRTALLEGRNVFWCPVCQ 267 YVYRRAG+PC VCG + + L GRN++WCP CQ Sbjct 234 YVYRRAGDPCLVCGTPVAHSELVGRNLYWCPKCQ 267 >gi|324997971|ref|ZP_08119083.1| endonuclease VIII [Pseudonocardia sp. P1] Length=271 Score = 293 bits (751), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 158/272 (59%), Positives = 183/272 (68%), Gaps = 10/272 (3%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLA+ H+ F PV VSSPQGRF SA+ L+G+V+ A A GKHLFH Y Sbjct 1 MPEGHTLHRLAKRHRSLFVRRPVRVSSPQGRFEGSAALLDGQVMTGAEAHGKHLFHRYGR 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 VVHVHLGLYGTFTE P PEP GQ+RMR+VG DLRGPT CE I E Sbjct 61 DRVVHVHLGLYGTFTESELPA----PEPVGQLRMRLVGESHYADLRGPTACELITSAEAR 116 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 V ARLG DPLR DA+P W R+++SR P+ LLMDQ V+AGVGNVYR ELLFRH +DP Sbjct 117 AVRARLGADPLRRDADPDRVWERVSRSRSPLATLLMDQAVLAGVGNVYRAELLFRHGLDP 176 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHD---HGLPSYLPDRP--RTYV 235 Q PGRG+ +DA W DLV+LM+ G+R G+I VRPEHD G P DR YV Sbjct 177 QLPGRGLDRATWDAMWPDLVALMRDGVRVGRIDTVRPEHDPRRRGEPGR-KDRHGGEVYV 235 Query 236 YRRAGEPCRVCGGVIRTALLEGRNVFWCPVCQ 267 YRRAG PC VCG +R + RN+FWCP CQ Sbjct 236 YRRAGLPCLVCGTEVRHSEHAARNLFWCPTCQ 267 >gi|333918753|ref|YP_004492334.1| fomramidopyrimidine-DNA glycosylase [Amycolicicoccus subflavus DQS3-9A1] gi|333480974|gb|AEF39534.1| Formamidopyrimidine-DNA glycosylase [Amycolicicoccus subflavus DQS3-9A1] Length=240 Score = 293 bits (751), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 141/244 (58%), Positives = 171/244 (71%), Gaps = 4/244 (1%) Query 25 VSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVGGPVVHVHLGLYGTFTEWARPTDGW 84 +SSPQGRFA A ++G+ RA AWGKHL HHY GG VVHVHLGLYG FT P Sbjct 1 MSSPQGRFAAGAQQVDGKRFERAEAWGKHLLHHYEGGAVVHVHLGLYGKFTCQYTP---- 56 Query 85 LPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVADVVARLGPDPLRSDANPSSAWSRI 144 + P G+VRMR+ GA +G DLRGPT CE I + V ++ARLGPDPLR DA+P W R+ Sbjct 57 MAAPVGEVRMRIAGATWGADLRGPTRCEVIGEEAVDQLLARLGPDPLRDDADPEQVWRRV 116 Query 145 TKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDPQRPGRGIGEPEFDAAWNDLVSLMK 204 +SR +G LL++Q+VIAGVGNVYR E+LFR I P RPG + E++ W DL LM Sbjct 117 HRSRAAVGGLLLNQSVIAGVGNVYRAEVLFRQGIAPDRPGSSLSRGEWNDVWRDLTDLMP 176 Query 205 VGLRRGKIIVVRPEHDHGLPSYLPDRPRTYVYRRAGEPCRVCGGVIRTALLEGRNVFWCP 264 VG+ GK+I +RPEHD+G P+Y P RPRTYVYRRAGE CRVCG +I A L+ R +FWCP Sbjct 177 VGVAEGKMITIRPEHDNGAPAYEPGRPRTYVYRRAGEKCRVCGSLIEQADLQARKIFWCP 236 Query 265 VCQT 268 CQ Sbjct 237 RCQV 240 >gi|331695758|ref|YP_004331997.1| DNA-(apurinic or apyrimidinic site) lyase [Pseudonocardia dioxanivorans CB1190] gi|326950447|gb|AEA24144.1| DNA-(apurinic or apyrimidinic site) lyase [Pseudonocardia dioxanivorans CB1190] Length=278 Score = 288 bits (736), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 166/273 (61%), Positives = 183/273 (68%), Gaps = 7/273 (2%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLAR H R F APV VSSPQGRF +A+ L+G VL RA A GKHLFH Y Sbjct 1 MPEGHTLHRLARRHGRLFGRAPVRVSSPQGRFEQAAALLDGAVLTRADAHGKHLFHRYGR 60 Query 61 GPVVHVHLGLYGTFTEWA-RPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEV 119 VVHVHLGLYGTF E G PEP GQVRMR+VGA DLRGPT CE I DGEV Sbjct 61 DRVVHVHLGLYGTFDETELPEPGGAPPEPRGQVRMRIVGATHVADLRGPTACELITDGEV 120 Query 120 ADVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRID 179 + ARLGPDPLR DA+P AW RI +S P+ LLMDQ V+AGVGNVYR ELLFRH ID Sbjct 121 RALRARLGPDPLRRDADPDLAWERIRRSSSPLATLLMDQKVVAGVGNVYRAELLFRHGID 180 Query 180 PQRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHD---HGLPSYLPDRP--RTY 234 PQ PGR + +DA W DLV LM+ G+RRG+I V PEHD G P DR Y Sbjct 181 PQLPGRALPRGTWDAMWADLVVLMRDGVRRGRIDTVAPEHDPRRRGEPGR-KDRHGGEVY 239 Query 235 VYRRAGEPCRVCGGVIRTALLEGRNVFWCPVCQ 267 VYRR G PC VCG + A RN+FWCP CQ Sbjct 240 VYRRQGMPCLVCGTPVLHAEHAARNLFWCPTCQ 272 >gi|326382819|ref|ZP_08204509.1| DNA-(apurinic or apyrimidinic site) lyase [Gordonia neofelifaecis NRRL B-59395] gi|326198409|gb|EGD55593.1| DNA-(apurinic or apyrimidinic site) lyase [Gordonia neofelifaecis NRRL B-59395] Length=231 Score = 280 bits (717), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 136/233 (59%), Positives = 165/233 (71%), Gaps = 12/233 (5%) Query 43 VLRRASAWGKHLFHHYVGGP--------VVHVHLGLYGTFTEWARPTDGWLPEPAGQVRM 94 V RRA AWGKHL H Y G +VH+HLG+YGTF E + P +PEP GQVRM Sbjct 2 VFRRAEAWGKHLIHRYDDGRRGSAATRRIVHIHLGIYGTFREESLP----MPEPTGQVRM 57 Query 95 RMVGAEFGTDLRGPTVCESIDDGEVADVVARLGPDPLRSDANPSSAWSRITKSRRPIGAL 154 R++G + G DLRGP CE ++ +VARLGPDPLR DA+P AW I++SRRPIG+L Sbjct 58 RLIGTDLGVDLRGPNACELYTRDDLERLVARLGPDPLRDDADPEVAWKAISRSRRPIGSL 117 Query 155 LMDQTVIAGVGNVYRNELLFRHRIDPQRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIV 214 LMDQ VIAGVGN+YR E+LFR ++P RPG + EFD W DL+ LM +G+RRG I V Sbjct 118 LMDQKVIAGVGNIYRAEVLFRAGVEPHRPGSAVTRDEFDEMWADLLHLMPIGVRRGHIHV 177 Query 215 VRPEHDHGLPSYLPDRPRTYVYRRAGEPCRVCGGVIRTALLEGRNVFWCPVCQ 267 VRPE D+G P+Y DRPRTYVYRRAG+PCR+CG I +EGRN+FWCP CQ Sbjct 178 VRPEDDNGAPAYASDRPRTYVYRRAGDPCRLCGAPIAWEEMEGRNLFWCPSCQ 230 >gi|257055240|ref|YP_003133072.1| formamidopyrimidine-DNA glycosylase [Saccharomonospora viridis DSM 43017] gi|256585112|gb|ACU96245.1| formamidopyrimidine-DNA glycosylase [Saccharomonospora viridis DSM 43017] Length=270 Score = 278 bits (712), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 152/271 (57%), Positives = 187/271 (70%), Gaps = 8/271 (2%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLARLH+RR+ GAPV VSSPQGRF+ A+ ++G V+ A A+GKHLFH+Y Sbjct 1 MPEGHTLHRLARLHRRRYVGAPVEVSSPQGRFSTEAAVIDGHVMTAAEAFGKHLFHYYGS 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 +VHVHLGLYGTFTE+ P + EP GQVRMR+VG TDLRGP CE + + Sbjct 61 QGIVHVHLGLYGTFTEYPLP----VAEPVGQVRMRLVGRTHWTDLRGPNRCELLTPPQAE 116 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 ++ARLGPDPLR DA+P AW RI++SR P+ LLMDQ+VIAGVGNVYR E+L+R RIDP Sbjct 117 ALIARLGPDPLRDDADPQEAWERISRSRAPLAGLLMDQSVIAGVGNVYRAEVLYRQRIDP 176 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPR----TYVY 236 PGR + +DA W DL LM+ G+R G+I V PEH + P R R YVY Sbjct 177 MLPGRSLSRRRWDALWADLRQLMREGVRLGRIDTVEPEHRPEVMGRAPRRDRHGGEVYVY 236 Query 237 RRAGEPCRVCGGVIRTALLEGRNVFWCPVCQ 267 RR +PC VCG + L GRN++WCP CQ Sbjct 237 RRTHKPCLVCGTPVAQTKLAGRNLYWCPTCQ 267 >gi|256375288|ref|YP_003098948.1| DNA glycosylase/AP lyase [Actinosynnema mirum DSM 43827] gi|255919591|gb|ACU35102.1| DNA glycosylase/AP lyase, H2TH DNA-binding [Actinosynnema mirum DSM 43827] Length=267 Score = 278 bits (712), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 146/274 (54%), Positives = 183/274 (67%), Gaps = 16/274 (5%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGH LHR+ARLHQR +AG ++V+SPQGRFA A A++GRVL +A A GKHL H Y Sbjct 1 MPEGHVLHRIARLHQRVYAGQALTVTSPQGRFA--AEAVDGRVLVKAEAHGKHLLHVYGP 58 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 +VHVHLGLYG F E P EP GQVRMR+VG TDLRGP CE + VA Sbjct 59 DAIVHVHLGLYGKFAEHEPPVT----EPVGQVRMRIVGERNWTDLRGPAACEVLTLDGVA 114 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 + ARLGPDPLR DA P+ A +R+ +S++P+ LLMDQ V+AG+GN+YR ELLFRH +DP Sbjct 115 ALRARLGPDPLRRDAKPAEALARVRRSKQPLATLLMDQKVVAGIGNIYRAELLFRHGLDP 174 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPR-------T 233 + G + E + A W DLV+LM+ G++ G+I VRP H LP PR Sbjct 175 MKQGSAVDEELWAAMWPDLVALMRDGVKAGRIDTVRPAH---LPEVTGRAPREDRHGGEV 231 Query 234 YVYRRAGEPCRVCGGVIRTALLEGRNVFWCPVCQ 267 YVYRRAG+PC VCG + A+L RN++WCP CQ Sbjct 232 YVYRRAGQPCLVCGTPVAHAVLAARNLYWCPTCQ 265 >gi|119717704|ref|YP_924669.1| formamidopyrimidine-DNA glycolase [Nocardioides sp. JS614] gi|119538365|gb|ABL82982.1| Formamidopyrimidine-DNA glycolase [Nocardioides sp. JS614] Length=282 Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 151/278 (55%), Positives = 182/278 (66%), Gaps = 16/278 (5%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLA FAG V SPQGRFADSA+ ++G+VL A AWGKHLF + Sbjct 1 MPEGHTLHRLADEITATFAGRVVRTGSPQGRFADSAALVDGQVLVGAEAWGKHLFIAFPD 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFG----TDLRGPTVCESIDD 116 VH+HLGLYG A +P GQVR+R+V A+ DLRG T CE + Sbjct 61 ERFVHIHLGLYGKLDLVAGVEQ--VPAAVGQVRLRIVAADRSWHAYADLRGATTCELVTR 118 Query 117 GEVADVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRH 176 + VVAR GPDPLR+DA+P AW+RI +S+ PIG LLMDQ V+AGVGNVYR ELLFRH Sbjct 119 EQRDAVVARSGPDPLRADADPGRAWARIRRSKAPIGGLLMDQAVLAGVGNVYRAELLFRH 178 Query 177 RIDPQRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPR---- 232 RIDPQRPG + ++ A W+DLV LM+ G+R G+I VRPEH P + PR Sbjct 179 RIDPQRPGNTLRVGQWQAMWDDLVVLMREGVRTGRIDTVRPEH---TPEAMGRPPRRDDH 235 Query 233 ---TYVYRRAGEPCRVCGGVIRTALLEGRNVFWCPVCQ 267 YVYRR G+PC VCG +RTA L+GRN+FWCP CQ Sbjct 236 GGEVYVYRRTGQPCHVCGATVRTAELQGRNLFWCPRCQ 273 >gi|296270386|ref|YP_003653018.1| DNA-(apurinic or apyrimidinic site) lyase [Thermobispora bispora DSM 43833] gi|296093173|gb|ADG89125.1| DNA-(apurinic or apyrimidinic site) lyase [Thermobispora bispora DSM 43833] Length=269 Score = 268 bits (686), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 148/273 (55%), Positives = 179/273 (66%), Gaps = 12/273 (4%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGH +HRLA + R FAG PV+VSSPQG+F+DSA+ L+G+ + A GKHLF + Sbjct 1 MPEGHIIHRLAAEYARSFAGGPVAVSSPQGKFSDSAALLDGQRMHGTDAHGKHLFLGF-- 58 Query 61 GPV--VHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGE 118 GP+ V +HLGLYG T P P P G VR+R+ G DLRGP CE I D E Sbjct 59 GPLGWVRIHLGLYGKVTFGDDPA----PAPVGAVRLRLAGGGRWADLRGPAACELITDEE 114 Query 119 VADVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRI 178 V ARLGPDPLR +P AW+RI++SR PI ALL+DQ VIAGVGNVYR E+LFRH I Sbjct 115 KRAVHARLGPDPLRDGDDPERAWARISRSRAPIAALLLDQRVIAGVGNVYRAEVLFRHGI 174 Query 179 DPQRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHD---HGLPSYLPDR-PRTY 234 DP RPG + E++A W+DL LM+ G+ G+I VRPEH G P + D Y Sbjct 175 DPYRPGCELTRAEWEALWSDLAGLMRQGVANGRIDTVRPEHTPEAMGRPPRVDDHGGEVY 234 Query 235 VYRRAGEPCRVCGGVIRTALLEGRNVFWCPVCQ 267 VYRRAG PC VCG IRTA LE RN++WCP CQ Sbjct 235 VYRRAGSPCHVCGAEIRTAELESRNLYWCPACQ 267 >gi|302534414|ref|ZP_07286756.1| formamidopyrimidine-DNA glycosylase [Streptomyces sp. C] gi|302443309|gb|EFL15125.1| formamidopyrimidine-DNA glycosylase [Streptomyces sp. C] Length=268 Score = 268 bits (685), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 146/278 (53%), Positives = 179/278 (65%), Gaps = 23/278 (8%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHT+HRLA+ H RFA PV VSSPQGRFA+SA+ L+GR L A A GKHLF +G Sbjct 1 MPEGHTIHRLAQDHTERFAARPVRVSSPQGRFAESAALLDGRELESAEAHGKHLFLE-LG 59 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPA----GQVRMRMVGAEFGTDLRGPTVCESIDD 116 +H+HLGL+G G+ P PA VR+R++ + DLRGPT C I + Sbjct 60 DAWIHIHLGLFGKL--------GFGPAPAPPATDTVRLRLLNEDHYADLRGPTACALIGE 111 Query 117 GEVADVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRH 176 GE + RLGPDPLR +P AW+RI++SR + ALLMDQ V+AGVGNVYR E+LFRH Sbjct 112 GEKKAIHDRLGPDPLRPADDPGRAWTRISRSRTTVAALLMDQKVVAGVGNVYRAEVLFRH 171 Query 177 RIDPQRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPR---- 232 IDP R GR + E+DA W DL +LM+ G+RR +I VR EH LP + PR Sbjct 172 GIDPYRLGRDLTRAEWDAMWADLAALMREGMRRNRIDTVRDEH---LPEAMGRPPRVDDH 228 Query 233 ---TYVYRRAGEPCRVCGGVIRTALLEGRNVFWCPVCQ 267 YVYRRA PC +CGG IRTA L RN+FWCP CQ Sbjct 229 GGEVYVYRRANMPCHICGGEIRTADLAARNLFWCPTCQ 266 >gi|328882456|emb|CCA55695.1| Formamidopyrimidine-DNA glycosylase [Streptomyces venezuelae ATCC 10712] Length=269 Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 146/272 (54%), Positives = 172/272 (64%), Gaps = 8/272 (2%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHT+HRLA H+ RF G V V+SPQG+FADSA+ L+G VL A GKHLF + G Sbjct 1 MPEGHTIHRLAVDHRERFGGRSVRVTSPQGKFADSAALLDGTVLETTEAHGKHLFLGFTG 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 VH+HLGL+G P P P VR+R+ + DLRGPT C I D E Sbjct 61 MGWVHIHLGLFGKVGFGDAPA----PPPTDTVRLRLANSRSYVDLRGPTTCALITDAEKR 116 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 + RLGPDPLR D + + AW RI+ SR I ALLMDQ VIAGVGNVYR E+LFRH IDP Sbjct 117 AIHDRLGPDPLREDDDRARAWRRISASRTTIAALLMDQKVIAGVGNVYRAEVLFRHGIDP 176 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHD---HGLPSYLPDR-PRTYVY 236 R GR + E+DA W DLV LM+ G+R +I VRPEH G P + D YVY Sbjct 177 YRAGRDLTPEEWDALWEDLVLLMREGVRLNRIDTVRPEHTPEAMGRPPRVDDHGGEVYVY 236 Query 237 RRAGEPCRVCGGVIRTALLEGRNVFWCPVCQT 268 RRA +PC VCG IRTA L RN+FWCP CQT Sbjct 237 RRANQPCHVCGSEIRTADLAARNLFWCPGCQT 268 >gi|29831970|ref|NP_826604.1| endonuclease VIII and DNA N-glycosylase with an AP lyase activity [Streptomyces avermitilis MA-4680] gi|29609087|dbj|BAC73139.1| putative endonuclease VIII and DNA N-glycosylase with an AP lyase activity [Streptomyces avermitilis MA-4680] Length=269 Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 142/271 (53%), Positives = 175/271 (65%), Gaps = 8/271 (2%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHT+HRLA ++ RF GA V+SPQG+FAD+A+ L+G VL A A GKHLF + Sbjct 1 MPEGHTIHRLADDYEARFGGAAARVTSPQGKFADAAALLDGTVLETADAHGKHLFLGFRR 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 +H+HLGL+G P P P VR+R+ DLRGPT C I DGE Sbjct 61 ADWIHIHLGLFGKVGFGDAPA----PPPTDTVRLRLANDTSYVDLRGPTTCALITDGEKR 116 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 + RLGPDPLR DA+P+ A+ R+++SR + ALLMDQ VIAGVGNVYR E+LFRH IDP Sbjct 117 AIHDRLGPDPLRPDADPARAYDRVSRSRTSVAALLMDQKVIAGVGNVYRAEVLFRHGIDP 176 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHD---HGLPSYLPDR-PRTYVY 236 R GR + E+DA W DLV+LM+ G+R +I VRPEH G P + D YVY Sbjct 177 YRTGRELTRREWDAIWADLVALMREGVRNNRIDTVRPEHTPEAMGRPPRVDDHGGEVYVY 236 Query 237 RRAGEPCRVCGGVIRTALLEGRNVFWCPVCQ 267 RRA PC +CGG IRTA L RN+FWCP CQ Sbjct 237 RRANLPCHICGGEIRTAGLAARNLFWCPTCQ 267 >gi|302545408|ref|ZP_07297750.1| DNA-formamidopyrimidine glycosylase [Streptomyces hygroscopicus ATCC 53653] gi|302463026|gb|EFL26119.1| DNA-formamidopyrimidine glycosylase [Streptomyces himastatinicus ATCC 53653] Length=270 Score = 265 bits (678), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 142/271 (53%), Positives = 175/271 (65%), Gaps = 8/271 (2%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHT+HRLA H RF G PV +SPQG+FAD A+ ++G+VL+ A A GKHLF + Sbjct 2 MPEGHTIHRLAADHLERFGGRPVRATSPQGKFADGAALVDGQVLQHAEAHGKHLFLDFAA 61 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 VHVHLGL+G +T + E VR+R+ G DLRGPT C I D E Sbjct 62 TGWVHVHLGLFGKYT-FGPAPAPPPTE---TVRLRLAGPGGYADLRGPTACALITDPEKQ 117 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 + RLGPDPLR D + AW+RI++SR + ALLMDQ ++AGVGNVYR E+LFRH IDP Sbjct 118 AIHDRLGPDPLRPDDDGDGAWTRISRSRVSVAALLMDQKIVAGVGNVYRAEVLFRHGIDP 177 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHD---HGLPSYLPDR-PRTYVY 236 RPGR + E+DA W+DL LM+ G+R +I VRPEH G P + D YVY Sbjct 178 YRPGRALARAEWDAIWSDLAELMREGVRNNRIDTVRPEHTPEAMGRPPRVDDHGGEVYVY 237 Query 237 RRAGEPCRVCGGVIRTALLEGRNVFWCPVCQ 267 RRAG+PC VC G IRTA L RN+FWCP CQ Sbjct 238 RRAGQPCLVCDGEIRTAGLAARNLFWCPACQ 268 >gi|297625920|ref|YP_003687683.1| formamidopyrimidine-DNA glycosylase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921685|emb|CBL56242.1| Formamidopyrimidine-DNA glycosylase (DNA-formamidopyrimidine glycosylase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length=271 Score = 265 bits (676), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 139/279 (50%), Positives = 176/279 (64%), Gaps = 23/279 (8%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHY-- 58 +PEGH LHRLA FA V VSSPQGRFA+SA+ ++G L +A AWGKHLF + Sbjct 1 MPEGHVLHRLAARFNELFADEQVQVSSPQGRFAESAALIDGSTLVQAQAWGKHLFVRFDA 60 Query 59 -VGGPVVHVHLGLYG--TFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESID 115 + P+VH+HLGL G +FTE L P GQVR+R+ + DLRGP +C I Sbjct 61 PIADPIVHIHLGLIGKLSFTE--------LAPPVGQVRVRINDGTWAADLRGPQICRLIS 112 Query 116 DGEVADVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFR 175 + E A +LG DPLRSD++P AW+++ +S +PI +LLM+Q + AGVGN+YR E+LFR Sbjct 113 EDEEAAATKKLGADPLRSDSDPERAWTKVHRSGKPIASLLMNQAIFAGVGNIYRAEVLFR 172 Query 176 HRIDPQRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPR--- 232 HRIDPQ PG + FD WNDLV LM++G+R G+I V PEH P L PR Sbjct 173 HRIDPQCPGNKLHRASFDLMWNDLVQLMRLGVRDGRIDTVYPEH---TPEALGRPPRVDA 229 Query 233 ----TYVYRRAGEPCRVCGGVIRTALLEGRNVFWCPVCQ 267 YVYRRA +PC VCG I LEGR++FWC CQ Sbjct 230 HGGEVYVYRRADQPCLVCGSPIHETTLEGRHLFWCGRCQ 268 >gi|295838891|ref|ZP_06825824.1| DNA-formamidopyrimidine glycosylase [Streptomyces sp. SPB74] gi|295827240|gb|EDY42376.2| DNA-formamidopyrimidine glycosylase [Streptomyces sp. SPB74] Length=271 Score = 264 bits (675), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 146/277 (53%), Positives = 178/277 (65%), Gaps = 18/277 (6%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHTLHRLA H +RF G PV +SPQG+FA SA+ L+G VL A A GKHLF + Sbjct 1 MPEGHTLHRLAADHDQRFGGRPVRATSPQGKFAASAALLDGAVLDGAEAHGKHLFLGF-- 58 Query 61 GPV--VHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGE 118 GP+ VH+HLGL+G + G P P +R+R+ G +DLRGPT C IDD Sbjct 59 GPLGWVHIHLGLFGKVAQ----GPGAAPPPTDTIRLRLTGPGGWSDLRGPTACALIDDEA 114 Query 119 VADVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRI 178 A + ARLGPDPLR + +AW+RI +SR I ALLMDQ ++AGVGNVYR E LFRH I Sbjct 115 KAALHARLGPDPLREADDGEAAWTRIARSRTTIAALLMDQKIVAGVGNVYRAEALFRHGI 174 Query 179 DPQRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHDHGLPSYLPDRPR------ 232 DP RPGR + E+DA W DL +LM+ G+R G+I VRPEH P + PR Sbjct 175 DPDRPGRSLTRTEWDALWADLRALMREGVRLGRIDTVRPEH---TPEAMGRPPRRDDHGG 231 Query 233 -TYVYRRAGEPCRVCGGVIRTALLEGRNVFWCPVCQT 268 YVYRRA +PC +CG IRT L GRN+FWCP CQ Sbjct 232 EVYVYRRAHQPCLICGTEIRTRELAGRNLFWCPRCQA 268 >gi|158315457|ref|YP_001507965.1| DNA-(apurinic or apyrimidinic site) lyase [Frankia sp. EAN1pec] gi|158110862|gb|ABW13059.1| DNA-(apurinic or apyrimidinic site) lyase [Frankia sp. EAN1pec] Length=272 Score = 264 bits (675), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 138/271 (51%), Positives = 173/271 (64%), Gaps = 8/271 (2%) Query 1 VPEGHTLHRLARLHQRRFAGAPVSVSSPQGRFADSASALNGRVLRRASAWGKHLFHHYVG 60 +PEGHT+HRLA +HQR F G PV+VSSPQGRF D A L+G+VL A A GKHL + Sbjct 1 MPEGHTVHRLAAVHQRMFRGRPVTVSSPQGRFVDGARMLDGQVLAEAEAHGKHLLLEFGD 60 Query 61 GPVVHVHLGLYGTFTEWARPTDGWLPEPAGQVRMRMVGAEFGTDLRGPTVCESIDDGEVA 120 ++H+HLG+YGT+ P P P G VR+R+ DLRGP CE + GEV Sbjct 61 EQILHIHLGIYGTYALGPGPA----PVPTGAVRLRLTADTGYADLRGPNACELLAPGEVK 116 Query 121 DVVARLGPDPLRSDANPSSAWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180 + RLGPDPLR+DA+P+ AW RI +SR PI LL+DQ V+AG GN+YR E+LFR I P Sbjct 117 VLRDRLGPDPLRADADPALAWRRIERSRTPIAVLLLDQKVVAGPGNIYRAEVLFRAGIHP 176 Query 181 QRPGRGIGEPEFDAAWNDLVSLMKVGLRRGKIIVVRPEHD---HGLPSYLPDR-PRTYVY 236 PGR + ++ A W DLV+LM G+R G+I VRP H G P + D YVY Sbjct 177 LLPGRELARDQWAAIWADLVTLMADGVRTGRIDTVRPAHTPEAMGRPPRVDDHGGEVYVY 236 Query 237 RRAGEPCRVCGGVIRTALLEGRNVFWCPVCQ 267 RR G+PC +C +RT L GRN+FWCP CQ Sbjct 237 RRTGQPCLICAAEVRTVQLAGRNLFWCPACQ 267 Lambda K H 0.323 0.141 0.457 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 410477079682 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40