BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2469c
Length=222
Score E
Sequences producing significant alignments: (Bits) Value
gi|308232141|ref|ZP_07415077.2| hypothetical protein TMAG_03028 ... 448 3e-124
gi|15609606|ref|NP_216985.1| hypothetical protein Rv2469c [Mycob... 447 5e-124
gi|31793650|ref|NP_856143.1| hypothetical protein Mb2496c [Mycob... 444 4e-123
gi|183983794|ref|YP_001852085.1| hypothetical protein MMAR_3820 ... 386 1e-105
gi|118619002|ref|YP_907334.1| hypothetical protein MUL_3745 [Myc... 385 2e-105
gi|240170943|ref|ZP_04749602.1| hypothetical protein MkanA1_1664... 380 9e-104
gi|342857866|ref|ZP_08714522.1| HNH endonuclease [Mycobacterium ... 367 9e-100
gi|41408388|ref|NP_961224.1| hypothetical protein MAP2290c [Myco... 365 2e-99
gi|15827641|ref|NP_301904.1| hypothetical protein ML1254 [Mycoba... 343 9e-93
gi|145223160|ref|YP_001133838.1| HNH endonuclease [Mycobacterium... 318 5e-85
gi|108800575|ref|YP_640772.1| HNH endonuclease [Mycobacterium sp... 316 1e-84
gi|254821437|ref|ZP_05226438.1| HNH endonuclease family protein ... 314 8e-84
gi|296170462|ref|ZP_06852050.1| HNH endonuclease [Mycobacterium ... 311 4e-83
gi|333990076|ref|YP_004522690.1| hypothetical protein JDM601_143... 310 7e-83
gi|120405017|ref|YP_954846.1| HNH endonuclease [Mycobacterium va... 306 1e-81
gi|169628657|ref|YP_001702306.1| HNH endonuclease [Mycobacterium... 305 5e-81
gi|118470673|ref|YP_888955.1| HNH endonuclease [Mycobacterium sm... 303 9e-81
gi|325676017|ref|ZP_08155700.1| HNH endonuclease [Rhodococcus eq... 280 7e-74
gi|226360516|ref|YP_002778294.1| hypothetical protein ROP_11020 ... 280 9e-74
gi|111018395|ref|YP_701367.1| endonuclease [Rhodococcus jostii R... 280 1e-73
gi|312140373|ref|YP_004007709.1| hnh endonuclease [Rhodococcus e... 278 3e-73
gi|296139117|ref|YP_003646360.1| HNH endonuclease [Tsukamurella ... 278 3e-73
gi|226307312|ref|YP_002767272.1| hypothetical protein RER_38250 ... 278 5e-73
gi|229493132|ref|ZP_04386924.1| HNH endonuclease family protein ... 278 6e-73
gi|54023280|ref|YP_117522.1| putative endonuclease [Nocardia far... 276 2e-72
gi|262201969|ref|YP_003273177.1| HNH endonuclease [Gordonia bron... 260 1e-67
gi|256375279|ref|YP_003098939.1| HNH endonuclease [Actinosynnema... 258 4e-67
gi|343927547|ref|ZP_08767017.1| hypothetical protein GOALK_095_0... 250 1e-64
gi|257055232|ref|YP_003133064.1| restriction endonuclease [Sacch... 249 1e-64
gi|300788655|ref|YP_003768946.1| HNH endonuclease [Amycolatopsis... 240 1e-61
gi|302529048|ref|ZP_07281390.1| HNH endonuclease [Streptomyces s... 236 3e-60
gi|333918739|ref|YP_004492320.1| HNH endonuclease [Amycolicicocc... 232 3e-59
gi|296270505|ref|YP_003653137.1| HNH endonuclease [Thermobispora... 228 4e-58
gi|134097921|ref|YP_001103582.1| HNH endonuclease [Saccharopolys... 228 6e-58
gi|271968570|ref|YP_003342766.1| HNH endonuclease [Streptosporan... 223 1e-56
gi|269125590|ref|YP_003298960.1| HNH endonuclease [Thermomonospo... 222 3e-56
gi|297562359|ref|YP_003681333.1| HNH endonuclease [Nocardiopsis ... 219 2e-55
gi|72162610|ref|YP_290267.1| HNH nuclease [Thermobifida fusca YX... 207 6e-52
gi|319947987|ref|ZP_08022164.1| putative endonuclease [Dietzia c... 203 1e-50
gi|318060379|ref|ZP_07979102.1| hypothetical protein SSA3_20733 ... 178 4e-43
gi|333027063|ref|ZP_08455127.1| putative HNH endonuclease [Strep... 178 6e-43
gi|336177494|ref|YP_004582869.1| HNH endonuclease [Frankia symbi... 177 1e-42
gi|295838864|ref|ZP_06825797.1| HNH endonuclease [Streptomyces s... 175 3e-42
gi|294812656|ref|ZP_06771299.1| Putative endonuclease [Streptomy... 174 8e-42
gi|325002396|ref|ZP_08123508.1| HNH endonuclease [Pseudonocardia... 172 3e-41
gi|302545386|ref|ZP_07297728.1| HNH endonuclease [Streptomyces h... 172 4e-41
gi|312198933|ref|YP_004018994.1| HNH endonuclease [Frankia sp. E... 172 4e-41
gi|331695690|ref|YP_004331929.1| HNH endonuclease [Pseudonocardi... 172 4e-41
gi|326441189|ref|ZP_08215923.1| endonuclease [Streptomyces clavu... 172 4e-41
gi|337765776|emb|CCB74485.1| putative endonuclease [Streptomyces... 171 5e-41
>gi|308232141|ref|ZP_07415077.2| hypothetical protein TMAG_03028 [Mycobacterium tuberculosis SUMu001]
gi|308405120|ref|ZP_07494266.2| hypothetical protein TMLG_02225 [Mycobacterium tuberculosis SUMu012]
gi|308214900|gb|EFO74299.1| hypothetical protein TMAG_03028 [Mycobacterium tuberculosis SUMu001]
gi|308365332|gb|EFP54183.1| hypothetical protein TMLG_02225 [Mycobacterium tuberculosis SUMu012]
gi|339295358|gb|AEJ47469.1| hypothetical protein CCDC5079_2279 [Mycobacterium tuberculosis
CCDC5079]
gi|339298977|gb|AEJ51087.1| hypothetical protein CCDC5180_2250 [Mycobacterium tuberculosis
CCDC5180]
Length=243
Score = 448 bits (1153), Expect = 3e-124, Method: Compositional matrix adjust.
Identities = 222/222 (100%), Positives = 222/222 (100%), Gaps = 0/222 (0%)
Query 1 MAHGKKRRGHRSSGVAAGVTGPASCLHSVHSHRLASGVETHPPNRHESASIWNRRRVLLL 60
MAHGKKRRGHRSSGVAAGVTGPASCLHSVHSHRLASGVETHPPNRHESASIWNRRRVLLL
Sbjct 22 MAHGKKRRGHRSSGVAAGVTGPASCLHSVHSHRLASGVETHPPNRHESASIWNRRRVLLL 81
Query 61 NSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVRVPYR 120
NSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVRVPYR
Sbjct 82 NSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVRVPYR 141
Query 121 ARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRKGDRL 180
ARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRKGDRL
Sbjct 142 ARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRKGDRL 201
Query 181 LTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 222
LTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA
Sbjct 202 LTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 243
>gi|15609606|ref|NP_216985.1| hypothetical protein Rv2469c [Mycobacterium tuberculosis H37Rv]
gi|15841994|ref|NP_337031.1| hypothetical protein MT2545 [Mycobacterium tuberculosis CDC1551]
gi|148662304|ref|YP_001283827.1| hypothetical protein MRA_2495 [Mycobacterium tuberculosis H37Ra]
63 more sequence titles
Length=222
Score = 447 bits (1150), Expect = 5e-124, Method: Compositional matrix adjust.
Identities = 222/222 (100%), Positives = 222/222 (100%), Gaps = 0/222 (0%)
Query 1 MAHGKKRRGHRSSGVAAGVTGPASCLHSVHSHRLASGVETHPPNRHESASIWNRRRVLLL 60
MAHGKKRRGHRSSGVAAGVTGPASCLHSVHSHRLASGVETHPPNRHESASIWNRRRVLLL
Sbjct 1 MAHGKKRRGHRSSGVAAGVTGPASCLHSVHSHRLASGVETHPPNRHESASIWNRRRVLLL 60
Query 61 NSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVRVPYR 120
NSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVRVPYR
Sbjct 61 NSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVRVPYR 120
Query 121 ARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRKGDRL 180
ARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRKGDRL
Sbjct 121 ARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRKGDRL 180
Query 181 LTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 222
LTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA
Sbjct 181 LTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 222
>gi|31793650|ref|NP_856143.1| hypothetical protein Mb2496c [Mycobacterium bovis AF2122/97]
gi|121638352|ref|YP_978576.1| hypothetical protein BCG_2489c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224990846|ref|YP_002645533.1| hypothetical protein JTY_2483 [Mycobacterium bovis BCG str. Tokyo
172]
8 more sequence titles
Length=222
Score = 444 bits (1143), Expect = 4e-123, Method: Compositional matrix adjust.
Identities = 220/222 (99%), Positives = 221/222 (99%), Gaps = 0/222 (0%)
Query 1 MAHGKKRRGHRSSGVAAGVTGPASCLHSVHSHRLASGVETHPPNRHESASIWNRRRVLLL 60
MAHGKKRRGHRSSGVAAGVTGPASCLH VHSHRLASGVETHPPNRHESASIWNRRRVLLL
Sbjct 1 MAHGKKRRGHRSSGVAAGVTGPASCLHGVHSHRLASGVETHPPNRHESASIWNRRRVLLL 60
Query 61 NSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVRVPYR 120
NSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHS+TRSILVPSVIQLRSYVRVPYR
Sbjct 61 NSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSSTRSILVPSVIQLRSYVRVPYR 120
Query 121 ARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRKGDRL 180
ARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRKGDRL
Sbjct 121 ARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRKGDRL 180
Query 181 LTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 222
LTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA
Sbjct 181 LTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 222
>gi|183983794|ref|YP_001852085.1| hypothetical protein MMAR_3820 [Mycobacterium marinum M]
gi|183177120|gb|ACC42230.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=213
Score = 386 bits (991), Expect = 1e-105, Method: Compositional matrix adjust.
Identities = 188/222 (85%), Positives = 201/222 (91%), Gaps = 9/222 (4%)
Query 1 MAHGKKRRGHRSSGVAAGVTGPASCLHSVHSHRLASGVETHPPNRHESASIWNRRRVLLL 60
MA GKKRRGHR+ G AA +TG ASCLHSV +THPPNRHE+ASIW+RRRVLLL
Sbjct 1 MAQGKKRRGHRNHGAAASMTGTASCLHSV---------DTHPPNRHETASIWSRRRVLLL 51
Query 61 NSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVRVPYR 120
NSTYEPLTAL MRRAIVMVICGKADVVH+DP+GPVIHSATR+I+VPSVIQLR+YVRVPYR
Sbjct 52 NSTYEPLTALPMRRAIVMVICGKADVVHDDPAGPVIHSATRTIVVPSVIQLRTYVRVPYR 111
Query 121 ARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRKGDRL 180
ARVPMTRAALMHRDRFCCAYCG KADTVDHVVPRSRGG HSWENCVACCS CNHRKGD+L
Sbjct 112 ARVPMTRAALMHRDRFCCAYCGAKADTVDHVVPRSRGGEHSWENCVACCSACNHRKGDKL 171
Query 181 LTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 222
LTELGW+LRR PLPPTG HWRLLS +KELDPSWARYLGEGAA
Sbjct 172 LTELGWSLRRTPLPPTGQHWRLLSTIKELDPSWARYLGEGAA 213
>gi|118619002|ref|YP_907334.1| hypothetical protein MUL_3745 [Mycobacterium ulcerans Agy99]
gi|118571112|gb|ABL05863.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=213
Score = 385 bits (989), Expect = 2e-105, Method: Compositional matrix adjust.
Identities = 187/222 (85%), Positives = 201/222 (91%), Gaps = 9/222 (4%)
Query 1 MAHGKKRRGHRSSGVAAGVTGPASCLHSVHSHRLASGVETHPPNRHESASIWNRRRVLLL 60
MA GKKRRGHR+ G AA +TG ASCLHSV +THPPNRHE+ASIW+RRRVLLL
Sbjct 1 MAQGKKRRGHRNHGAAANMTGTASCLHSV---------DTHPPNRHETASIWSRRRVLLL 51
Query 61 NSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVRVPYR 120
NSTYEPLTAL MRRAIVMVICGKADVVH+DP+GPVIHSAT++I+VPSVIQLR+YVRVPYR
Sbjct 52 NSTYEPLTALPMRRAIVMVICGKADVVHDDPAGPVIHSATQTIVVPSVIQLRTYVRVPYR 111
Query 121 ARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRKGDRL 180
ARVPMTRAALMHRDRFCCAYCG KADTVDHVVPRSRGG HSWENCVACCS CNHRKGD+L
Sbjct 112 ARVPMTRAALMHRDRFCCAYCGAKADTVDHVVPRSRGGEHSWENCVACCSACNHRKGDKL 171
Query 181 LTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 222
LTELGW+LRR PLPPTG HWRLLS +KELDPSWARYLGEGAA
Sbjct 172 LTELGWSLRRTPLPPTGQHWRLLSTIKELDPSWARYLGEGAA 213
>gi|240170943|ref|ZP_04749602.1| hypothetical protein MkanA1_16649 [Mycobacterium kansasii ATCC
12478]
Length=224
Score = 380 bits (976), Expect = 9e-104, Method: Compositional matrix adjust.
Identities = 196/224 (88%), Positives = 204/224 (92%), Gaps = 2/224 (0%)
Query 1 MAHGKKRRGHRSSGVAAGVTGPA--SCLHSVHSHRLASGVETHPPNRHESASIWNRRRVL 58
MA GKKRR HR+SG AAG TGPA SCLH HSHR A GVETHPPNR ESASIWNRRRVL
Sbjct 1 MAQGKKRRSHRNSGAAAGGTGPATASCLHGAHSHRPALGVETHPPNRSESASIWNRRRVL 60
Query 59 LLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVRVP 118
LLNSTYEPLTAL MRRA+VMVICGKADVVH+DP+GPVIHSAT SI+VPSVIQLR+YVRVP
Sbjct 61 LLNSTYEPLTALPMRRAVVMVICGKADVVHDDPAGPVIHSATSSIVVPSVIQLRTYVRVP 120
Query 119 YRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRKGD 178
YRARVPMTRAALMHRDRFCCAYCG KADTVDHVVPRSRGG HSWENCVACCS CNHRKGD
Sbjct 121 YRARVPMTRAALMHRDRFCCAYCGAKADTVDHVVPRSRGGEHSWENCVACCSTCNHRKGD 180
Query 179 RLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 222
+LLTELGW+LRR PLPPTG HWRLLS VKELDPSW RYLGEGAA
Sbjct 181 KLLTELGWSLRRKPLPPTGQHWRLLSTVKELDPSWERYLGEGAA 224
>gi|342857866|ref|ZP_08714522.1| HNH endonuclease [Mycobacterium colombiense CECT 3035]
gi|342135199|gb|EGT88365.1| HNH endonuclease [Mycobacterium colombiense CECT 3035]
Length=215
Score = 367 bits (941), Expect = 9e-100, Method: Compositional matrix adjust.
Identities = 186/224 (84%), Positives = 194/224 (87%), Gaps = 11/224 (4%)
Query 1 MAHGKKRRGHRSSGVAAGVTGP--ASCLHSVHSHRLASGVETHPPNRHESASIWNRRRVL 58
MA GKKRR HRS AAG+TGP AS LHSV E HPP R E ASIW+RRRVL
Sbjct 1 MAQGKKRRSHRSQVAAAGLTGPTTASSLHSV---------EIHPPARPEGASIWSRRRVL 51
Query 59 LLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVRVP 118
LLNSTYEPLTAL MRRAIVMVICGKADVVH DP+GPVIHSAT SI+VPSVIQLRSYVRVP
Sbjct 52 LLNSTYEPLTALPMRRAIVMVICGKADVVHHDPAGPVIHSATSSIVVPSVIQLRSYVRVP 111
Query 119 YRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRKGD 178
YRARVPMTRAALMHRDRFCCAYCG KADTVDHV+PRSRGG HSWENCVACCS CNHRKGD
Sbjct 112 YRARVPMTRAALMHRDRFCCAYCGAKADTVDHVLPRSRGGDHSWENCVACCSTCNHRKGD 171
Query 179 RLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 222
+LL+ELGWALRR PLPPTG HWRLLS VKELDP+WARYLGEGAA
Sbjct 172 KLLSELGWALRRPPLPPTGQHWRLLSTVKELDPAWARYLGEGAA 215
>gi|41408388|ref|NP_961224.1| hypothetical protein MAP2290c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118464205|ref|YP_880931.1| HNH endonuclease [Mycobacterium avium 104]
gi|254774520|ref|ZP_05216036.1| HNH endonuclease family protein [Mycobacterium avium subsp. avium
ATCC 25291]
gi|41396744|gb|AAS04607.1| hypothetical protein MAP_2290c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118165492|gb|ABK66389.1| HNH endonuclease family protein [Mycobacterium avium 104]
gi|336458276|gb|EGO37256.1| restriction endonuclease [Mycobacterium avium subsp. paratuberculosis
S397]
Length=215
Score = 365 bits (938), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 185/224 (83%), Positives = 193/224 (87%), Gaps = 11/224 (4%)
Query 1 MAHGKKRRGHRSSGVAAGVTGP--ASCLHSVHSHRLASGVETHPPNRHESASIWNRRRVL 58
MA GKKRR HRS AAG+TGP AS LHSV ETHPP R +S SIW+RRRVL
Sbjct 1 MAQGKKRRRHRSQVAAAGLTGPPTASSLHSV---------ETHPPTRPDSTSIWSRRRVL 51
Query 59 LLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVRVP 118
LLNSTYEPLTAL MRRAIVMVICGKADVVH DP+GPVIHSAT SI++PSVIQLRSYVRVP
Sbjct 52 LLNSTYEPLTALPMRRAIVMVICGKADVVHHDPAGPVIHSATSSIVMPSVIQLRSYVRVP 111
Query 119 YRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRKGD 178
YRARVPMTRAALMHRDRFCCAYCG KADTVDHVVPRSRGG HSWENCVACCS CNHRKGD
Sbjct 112 YRARVPMTRAALMHRDRFCCAYCGAKADTVDHVVPRSRGGDHSWENCVACCSTCNHRKGD 171
Query 179 RLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 222
+LL ELGW LRR PLPPTG HWRLLS VKELDP+WARYLGEGAA
Sbjct 172 KLLNELGWTLRRPPLPPTGQHWRLLSTVKELDPAWARYLGEGAA 215
>gi|15827641|ref|NP_301904.1| hypothetical protein ML1254 [Mycobacterium leprae TN]
gi|221230118|ref|YP_002503534.1| hypothetical protein MLBr_01254 [Mycobacterium leprae Br4923]
gi|4883448|emb|CAB43161.1| hypothetical protein MLCB1610.15 [Mycobacterium leprae]
gi|13093192|emb|CAC31635.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219933225|emb|CAR71349.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=215
Score = 343 bits (880), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 174/224 (78%), Positives = 184/224 (83%), Gaps = 11/224 (4%)
Query 1 MAHGKKRRGHRSSGVAAGVTGPA--SCLHSVHSHRLASGVETHPPNRHESASIWNRRRVL 58
M K RR HRSSG AA + A S LH+V + HP +ES SIWNRRRVL
Sbjct 1 MVQRKNRRSHRSSGAAANLIRAANPSSLHNV---------DIHPSTCYESGSIWNRRRVL 51
Query 59 LLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVRVP 118
LLNSTYEPLTAL RRAI+MVICGKADVVH DP+GPV+HSATRSI VPSVIQLRSYVRVP
Sbjct 52 LLNSTYEPLTALPTRRAIIMVICGKADVVHVDPAGPVVHSATRSITVPSVIQLRSYVRVP 111
Query 119 YRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRKGD 178
YRARVPMTRAALMHRDRFCCAYCG KADTVDHVVPRSRGG HSWENCVACCS CNHRKGD
Sbjct 112 YRARVPMTRAALMHRDRFCCAYCGAKADTVDHVVPRSRGGDHSWENCVACCSTCNHRKGD 171
Query 179 RLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 222
+LLTELGW LRR P+ PTG HWRLLS VKELDP+WARYLG GAA
Sbjct 172 KLLTELGWVLRRTPVLPTGQHWRLLSTVKELDPAWARYLGGGAA 215
>gi|145223160|ref|YP_001133838.1| HNH endonuclease [Mycobacterium gilvum PYR-GCK]
gi|315443617|ref|YP_004076496.1| restriction endonuclease [Mycobacterium sp. Spyr1]
gi|145215646|gb|ABP45050.1| HNH endonuclease [Mycobacterium gilvum PYR-GCK]
gi|315261920|gb|ADT98661.1| restriction endonuclease [Mycobacterium sp. Spyr1]
Length=220
Score = 318 bits (814), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 155/222 (70%), Positives = 180/222 (82%), Gaps = 2/222 (0%)
Query 1 MAHGKKRRGHRSSGVAAGVTGPASCLHSVHSHRLASGVETHPPNRHESASIWNRRRVLLL 60
MA K RGHR+ A + G +S S H +A V+ HP +S+W RRRVLLL
Sbjct 1 MAQRKNGRGHRNHRTAVALPGSSSPTASRALHSVAPAVDAHPVV--AESSVWGRRRVLLL 58
Query 61 NSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVRVPYR 120
NSTYEPLTAL +RRA++M++CGKADVVH+DP GPVIHSATRSI VP+VI+LR++VRVPYR
Sbjct 59 NSTYEPLTALPLRRAVIMLMCGKADVVHDDPVGPVIHSATRSIRVPTVIRLRTFVRVPYR 118
Query 121 ARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRKGDRL 180
AR+PMTRAALMHRDRF CAYCG KADTVDHV+PRSRGGAH+WENCVA CS CNHRK D+L
Sbjct 119 ARIPMTRAALMHRDRFRCAYCGSKADTVDHVIPRSRGGAHTWENCVAACSACNHRKADKL 178
Query 181 LTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 222
L+ELGW+L PLPP G HWRLLS+VKELDP+W RYLGEGAA
Sbjct 179 LSELGWSLHTTPLPPKGQHWRLLSSVKELDPAWVRYLGEGAA 220
>gi|108800575|ref|YP_640772.1| HNH endonuclease [Mycobacterium sp. MCS]
gi|119869714|ref|YP_939666.1| HNH endonuclease [Mycobacterium sp. KMS]
gi|126436191|ref|YP_001071882.1| HNH endonuclease [Mycobacterium sp. JLS]
gi|108770994|gb|ABG09716.1| HNH endonuclease [Mycobacterium sp. MCS]
gi|119695803|gb|ABL92876.1| HNH endonuclease [Mycobacterium sp. KMS]
gi|126235991|gb|ABN99391.1| HNH endonuclease [Mycobacterium sp. JLS]
Length=222
Score = 316 bits (810), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 165/229 (73%), Positives = 179/229 (79%), Gaps = 14/229 (6%)
Query 1 MAHGKKR----RGHRSSGVAAGVTGPAS---CLHSVHSHRLASGVETHPPNRHESASIWN 53
MAH KK GH+ + A G +GPA+ LHSV H + H S+W
Sbjct 1 MAHRKKSPSRPTGHKRAA-AVGPSGPAASARVLHSVEIHGGETAASIH------DGSLWG 53
Query 54 RRRVLLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRS 113
RRRVLLLNSTYEPLTAL +RRA+VM+ICGKADVVHEDPSGPVIHSATRSI VP+VI+LRS
Sbjct 54 RRRVLLLNSTYEPLTALPLRRAVVMLICGKADVVHEDPSGPVIHSATRSISVPTVIRLRS 113
Query 114 YVRVPYRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCN 173
+VRVPYRARVPMTRAALMHRDRF CAYCG KADTVDHVVPRSRGG HSWENCVA C+PCN
Sbjct 114 FVRVPYRARVPMTRAALMHRDRFRCAYCGAKADTVDHVVPRSRGGDHSWENCVAACAPCN 173
Query 174 HRKGDRLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 222
HRK D LL ELGW LR PLPP G HWRLLS VKELDP+W RYLGEGAA
Sbjct 174 HRKADHLLAELGWTLRHVPLPPKGQHWRLLSTVKELDPAWMRYLGEGAA 222
>gi|254821437|ref|ZP_05226438.1| HNH endonuclease family protein [Mycobacterium intracellulare
ATCC 13950]
Length=166
Score = 314 bits (804), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 151/166 (91%), Positives = 158/166 (96%), Gaps = 0/166 (0%)
Query 57 VLLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVR 116
+LLLNSTYEPLTAL MRRAIVMVICGKADVVH DP+GPVIHSATRSI+VPSVIQLRSYVR
Sbjct 1 MLLLNSTYEPLTALPMRRAIVMVICGKADVVHHDPAGPVIHSATRSIVVPSVIQLRSYVR 60
Query 117 VPYRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRK 176
VPYRARVPMTRAALMHRDRFCCAYCG KADTVDHVVPRSRGG HSWENCVACCS CNHRK
Sbjct 61 VPYRARVPMTRAALMHRDRFCCAYCGAKADTVDHVVPRSRGGDHSWENCVACCSTCNHRK 120
Query 177 GDRLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 222
GD+LL+ELGWALRR P+PPTG HWRLLS VKELDP+WARYLGEGAA
Sbjct 121 GDKLLSELGWALRRPPMPPTGQHWRLLSTVKELDPAWARYLGEGAA 166
>gi|296170462|ref|ZP_06852050.1| HNH endonuclease [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295894933|gb|EFG74654.1| HNH endonuclease [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=166
Score = 311 bits (797), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 150/166 (91%), Positives = 156/166 (94%), Gaps = 0/166 (0%)
Query 57 VLLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVR 116
+LLLNSTYEPLTAL MRRAIVMVICGKADVVH DP+GPVIHSAT SI+VPSVIQLR+YVR
Sbjct 1 MLLLNSTYEPLTALPMRRAIVMVICGKADVVHHDPAGPVIHSATSSIMVPSVIQLRTYVR 60
Query 117 VPYRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRK 176
VPYRARVPMTRAALMHRDRF CAYCG KADTVDHVVPRSRGG HSWENCVACCS CNHRK
Sbjct 61 VPYRARVPMTRAALMHRDRFSCAYCGAKADTVDHVVPRSRGGDHSWENCVACCSTCNHRK 120
Query 177 GDRLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 222
GD+LLTELGW LRRAPLPPTG HWRLLS VKELDP+WARYLGEGAA
Sbjct 121 GDKLLTELGWVLRRAPLPPTGQHWRLLSTVKELDPAWARYLGEGAA 166
>gi|333990076|ref|YP_004522690.1| hypothetical protein JDM601_1436 [Mycobacterium sp. JDM601]
gi|333486044|gb|AEF35436.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=211
Score = 310 bits (795), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 161/220 (74%), Positives = 178/220 (81%), Gaps = 13/220 (5%)
Query 6 KRRGHRSSGV-AAGVTGPAS--CLHSVHSHRLASGVETHPPNRHESASIWNRRRVLLLNS 62
KRRGHR G A +TG A+ CLHSV ASG ++SASIW RRRVLLLNS
Sbjct 2 KRRGHRRPGAPVASLTGLATTPCLHSVS----ASGTG------NDSASIWTRRRVLLLNS 51
Query 63 TYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVRVPYRAR 122
T+EPLTAL +RRAIVM+ICGKADVVH+DP+GPVIHSATRS++VPSVI+LRSYVRVPYRAR
Sbjct 52 TFEPLTALPLRRAIVMLICGKADVVHDDPAGPVIHSATRSVVVPSVIRLRSYVRVPYRAR 111
Query 123 VPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRKGDRLLT 182
+P+TRAALMHRDR CAYCGGKADTVDHVVPRSRGG HSWENCVA CS CNHRK DRLL
Sbjct 112 IPLTRAALMHRDRHSCAYCGGKADTVDHVVPRSRGGDHSWENCVAACSACNHRKADRLLA 171
Query 183 ELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 222
ELGW LR P P G HWRLL+ + +LDP W RYLGEGAA
Sbjct 172 ELGWTLRLVPTSPKGQHWRLLAVIHDLDPVWMRYLGEGAA 211
>gi|120405017|ref|YP_954846.1| HNH endonuclease [Mycobacterium vanbaalenii PYR-1]
gi|119957835|gb|ABM14840.1| HNH endonuclease [Mycobacterium vanbaalenii PYR-1]
Length=221
Score = 306 bits (784), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 158/222 (72%), Positives = 179/222 (81%), Gaps = 1/222 (0%)
Query 1 MAHGKKRRGHRSSGVAAGVTGPASCLHSVHSHRLASGVETHPPNRHESASIWNRRRVLLL 60
MA K RGHR AAG +G S S H +A V+T P + S+W RRRVLLL
Sbjct 1 MAQRKNGRGHRHHRTAAGTSGSTSATTSRALHSVAPSVDTLTPA-PQDGSVWGRRRVLLL 59
Query 61 NSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVRVPYR 120
NSTYEPLTAL +RRA++M++CGKADVVH+DP GPVIHSATRSI VP+VI+LR++VRVPYR
Sbjct 60 NSTYEPLTALPLRRAVIMLMCGKADVVHDDPVGPVIHSATRSIAVPTVIRLRTFVRVPYR 119
Query 121 ARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRKGDRL 180
AR+PMTRAALMHRDRF CAYC KADTVDHV+PRSRGGAHSWENCVA CS CNHRK DRL
Sbjct 120 ARIPMTRAALMHRDRFRCAYCSAKADTVDHVIPRSRGGAHSWENCVAACSACNHRKADRL 179
Query 181 LTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 222
L+ELGW+L PLPP G HWRLLS+VKELDP+W RYLGEGAA
Sbjct 180 LSELGWSLHTTPLPPKGQHWRLLSSVKELDPAWVRYLGEGAA 221
>gi|169628657|ref|YP_001702306.1| HNH endonuclease [Mycobacterium abscessus ATCC 19977]
gi|169240624|emb|CAM61652.1| Probable HNH endonuclease precursor [Mycobacterium abscessus]
Length=183
Score = 305 bits (780), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 139/181 (77%), Positives = 162/181 (90%), Gaps = 0/181 (0%)
Query 42 PPNRHESASIWNRRRVLLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATR 101
P +++ S+W RRRVLLLNSTYEPLTAL MRRA++M++CGKADVVH+DP+ P+IHSAT
Sbjct 3 PQQSNDAGSLWGRRRVLLLNSTYEPLTALPMRRAVIMLLCGKADVVHDDPAAPIIHSATT 62
Query 102 SILVPSVIQLRSYVRVPYRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHS 161
S+ VPSVI+LR++VRVPYRARVPMTRAALMHRDRF CAYCGG+ADT+DHV+PRS+GGAHS
Sbjct 63 SVAVPSVIRLRTFVRVPYRARVPMTRAALMHRDRFRCAYCGGRADTIDHVIPRSKGGAHS 122
Query 162 WENCVACCSPCNHRKGDRLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGA 221
WENCVACCS CNHRK DRLL ELGW+L P+PP G HWRLLS+VKELDP+W RYLGEGA
Sbjct 123 WENCVACCSSCNHRKADRLLAELGWSLHTTPMPPKGQHWRLLSSVKELDPAWVRYLGEGA 182
Query 222 A 222
A
Sbjct 183 A 183
>gi|118470673|ref|YP_888955.1| HNH endonuclease [Mycobacterium smegmatis str. MC2 155]
gi|118171960|gb|ABK72856.1| HNH endonuclease family protein [Mycobacterium smegmatis str.
MC2 155]
Length=192
Score = 303 bits (777), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 143/175 (82%), Positives = 159/175 (91%), Gaps = 0/175 (0%)
Query 48 SASIWNRRRVLLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPS 107
AS+W RRRVLLLN+TYEPLTAL +RRA++MV+CGKADVVH+DP+ PVIHSA+RSI+VPS
Sbjct 18 DASLWGRRRVLLLNATYEPLTALPLRRAVIMVVCGKADVVHDDPTSPVIHSASRSIVVPS 77
Query 108 VIQLRSYVRVPYRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVA 167
VI+LR+YVRVPYRARVPMTRAALMHRDRF CAYCGG+ADTVDHVVPRSRGG HSWENCVA
Sbjct 78 VIRLRTYVRVPYRARVPMTRAALMHRDRFRCAYCGGRADTVDHVVPRSRGGEHSWENCVA 137
Query 168 CCSPCNHRKGDRLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 222
C+ CNHRK DRLLTELGW LR P+PP G HWRLLS VKELDP+W RYLGEGAA
Sbjct 138 ACATCNHRKADRLLTELGWTLRCVPMPPKGQHWRLLSTVKELDPAWVRYLGEGAA 192
>gi|325676017|ref|ZP_08155700.1| HNH endonuclease [Rhodococcus equi ATCC 33707]
gi|325553255|gb|EGD22934.1| HNH endonuclease [Rhodococcus equi ATCC 33707]
Length=221
Score = 280 bits (717), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 146/225 (65%), Positives = 169/225 (76%), Gaps = 7/225 (3%)
Query 1 MAHGKKRRGHRS---SGVAAGVTGPASCLHSVHSHRLASGVETHPPNRHESASIWNRRRV 57
MAH + R HR + V T A LH + ASG+ P R WN+RRV
Sbjct 1 MAHRQSARAHRQLVPTDVRGNHTSGAFPLHVI-PEPGASGLAL--PGRGPQPG-WNKRRV 56
Query 58 LLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVRV 117
LLLN+T+EPLTAL RRA+V+++C KAD VHEDP GPVIHS S+ VPSVI+LR+YVRV
Sbjct 57 LLLNATFEPLTALPARRAVVLMVCDKADAVHEDPLGPVIHSEGCSLQVPSVIRLRNYVRV 116
Query 118 PYRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRKG 177
PYR+RVPMTRAALMHRDRF C YCG KA+T+DHVVPRSRGG HSWENCVACC+PCNHRK
Sbjct 117 PYRSRVPMTRAALMHRDRFRCGYCGNKAETIDHVVPRSRGGGHSWENCVACCAPCNHRKA 176
Query 178 DRLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 222
D+LLTELGW LR A +PP+GPHWRLLS+ EL P+W YLGEGAA
Sbjct 177 DKLLTELGWTLRTALVPPSGPHWRLLSSTTELHPTWLPYLGEGAA 221
>gi|226360516|ref|YP_002778294.1| hypothetical protein ROP_11020 [Rhodococcus opacus B4]
gi|226239001|dbj|BAH49349.1| hypothetical protein [Rhodococcus opacus B4]
Length=223
Score = 280 bits (717), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 142/226 (63%), Positives = 168/226 (75%), Gaps = 7/226 (3%)
Query 1 MAHGKKRRGHR----SSGVAAGVTGPASCLHSVHSHRLASGVETHPPNRHESASIWNRRR 56
M + R HR + +AGV+G A L + S + P + +W +RR
Sbjct 1 MKNRHSARAHRQLVPTDARSAGVSG-AFALQVITEGSAHSAEPSFPGE--NAVPLWIKRR 57
Query 57 VLLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVR 116
VLLLN TYEPLTAL RRA+V++ CGKAD VHEDP PV+HS S+ VPSVI+LR+YVR
Sbjct 58 VLLLNVTYEPLTALPARRAVVLMTCGKADTVHEDPHAPVVHSEQWSVQVPSVIRLRNYVR 117
Query 117 VPYRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRK 176
VPYRARVPMTRAALMHRDRF CAYCG KA+TVDHVVPRSRGG HSWENCVACC+PCNHRK
Sbjct 118 VPYRARVPMTRAALMHRDRFRCAYCGSKAETVDHVVPRSRGGEHSWENCVACCAPCNHRK 177
Query 177 GDRLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 222
D+LL+ELGW LR + +PP+GPHWRLL++ K+L PSW YLGEGAA
Sbjct 178 ADKLLSELGWTLRASLVPPSGPHWRLLASTKDLHPSWMPYLGEGAA 223
>gi|111018395|ref|YP_701367.1| endonuclease [Rhodococcus jostii RHA1]
gi|110817925|gb|ABG93209.1| possible endonuclease [Rhodococcus jostii RHA1]
Length=250
Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 141/219 (65%), Positives = 166/219 (76%), Gaps = 7/219 (3%)
Query 8 RGHR----SSGVAAGVTGPASCLHSVHSHRLASGVETHPPNRHESASIWNRRRVLLLNST 63
R HR + +AGV+G A L + S + P + +W +RRVLLLN T
Sbjct 35 RAHRQLVPTDARSAGVSG-AFALQVITEGSAHSAEPSFPGE--NAVPLWIKRRVLLLNVT 91
Query 64 YEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVRVPYRARV 123
YEPLTAL RRA+V++ CGKAD VHEDP PV+HS S+ VPSVI+LR+YVRVPYRARV
Sbjct 92 YEPLTALPARRAVVLMTCGKADTVHEDPQAPVVHSEQWSVQVPSVIRLRNYVRVPYRARV 151
Query 124 PMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRKGDRLLTE 183
PMTRAALMHRDRF CAYCG KA+TVDHVVPRSRGG HSWENCVACC+PCNHRK D+LL+E
Sbjct 152 PMTRAALMHRDRFRCAYCGAKAETVDHVVPRSRGGEHSWENCVACCAPCNHRKADKLLSE 211
Query 184 LGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 222
LGW LR + +PP+GPHWRLL++ K+L PSW YLGEGAA
Sbjct 212 LGWTLRASLVPPSGPHWRLLASTKDLHPSWMPYLGEGAA 250
>gi|312140373|ref|YP_004007709.1| hnh endonuclease [Rhodococcus equi 103S]
gi|311889712|emb|CBH49029.1| HNH endonuclease [Rhodococcus equi 103S]
Length=204
Score = 278 bits (712), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 130/171 (77%), Positives = 149/171 (88%), Gaps = 0/171 (0%)
Query 52 WNRRRVLLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQL 111
WN+RRVLLLN+T+EPLTAL RRA+V+++C KAD VHEDP GPVIHS S+ VPSVI+L
Sbjct 34 WNKRRVLLLNATFEPLTALPARRAVVLMVCDKADAVHEDPLGPVIHSEGCSLQVPSVIRL 93
Query 112 RSYVRVPYRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSP 171
R+YVRVPYR+RVPMTRAALMHRDRF C YCG KA+T+DHVVPRSRGG HSWENCVACC+P
Sbjct 94 RNYVRVPYRSRVPMTRAALMHRDRFRCGYCGNKAETIDHVVPRSRGGGHSWENCVACCAP 153
Query 172 CNHRKGDRLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 222
CNHRK D+LLTELGW LR A +PP+GPHWRLLS+ EL P+W YLGEGAA
Sbjct 154 CNHRKADKLLTELGWTLRTALVPPSGPHWRLLSSTTELHPTWLPYLGEGAA 204
>gi|296139117|ref|YP_003646360.1| HNH endonuclease [Tsukamurella paurometabola DSM 20162]
gi|296027251|gb|ADG78021.1| HNH endonuclease [Tsukamurella paurometabola DSM 20162]
Length=196
Score = 278 bits (712), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 129/173 (75%), Positives = 150/173 (87%), Gaps = 0/173 (0%)
Query 50 SIWNRRRVLLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVI 109
S W +RRVLLLN+TYEPLTA+SMRRAIV+++ +ADVVH+DP+GP++HSA RS+ VPSVI
Sbjct 24 SAWGKRRVLLLNATYEPLTAVSMRRAIVLMLRDRADVVHDDPNGPLVHSADRSLSVPSVI 83
Query 110 QLRSYVRVPYRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACC 169
+LR+YVRVPYRA+VPMTRAALMHRDRF C YCGGKADT+DHV PRSRGG HSWENCVACC
Sbjct 84 RLRTYVRVPYRAQVPMTRAALMHRDRFRCGYCGGKADTIDHVQPRSRGGGHSWENCVACC 143
Query 170 SPCNHRKGDRLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 222
+ CNHRK DRLL+ELGW LR P PP G HWRLLS +KE+DP W+RYL AA
Sbjct 144 ASCNHRKADRLLSELGWTLRTEPRPPQGRHWRLLSTLKEVDPMWSRYLDLDAA 196
>gi|226307312|ref|YP_002767272.1| hypothetical protein RER_38250 [Rhodococcus erythropolis PR4]
gi|226186429|dbj|BAH34533.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=232
Score = 278 bits (710), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 132/187 (71%), Positives = 153/187 (82%), Gaps = 2/187 (1%)
Query 36 SGVETHPPNRHESASIWNRRRVLLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPV 95
S +E PP+R W +RRVLLLN TYEPLTAL RRA+V++ CGKAD VHED GPV
Sbjct 48 SHLEMFPPDR--VVPEWVKRRVLLLNVTYEPLTALPARRAVVLMACGKADTVHEDEQGPV 105
Query 96 IHSATRSILVPSVIQLRSYVRVPYRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRS 155
+HSA S+ VPSVI+LR+YVRVPYRAR+PMTRAALMHRD F CAYCG KA+T+DHVVPRS
Sbjct 106 VHSADWSVQVPSVIRLRTYVRVPYRARIPMTRAALMHRDHFRCAYCGAKAETIDHVVPRS 165
Query 156 RGGAHSWENCVACCSPCNHRKGDRLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWAR 215
RGG HSWENCVACC+PCNHRK D++L+ELGW LR +PP+GPHWRLL+A KEL P+W
Sbjct 166 RGGGHSWENCVACCAPCNHRKADKMLSELGWTLRAELVPPSGPHWRLLAATKELHPAWMP 225
Query 216 YLGEGAA 222
YLG GAA
Sbjct 226 YLGVGAA 232
>gi|229493132|ref|ZP_04386924.1| HNH endonuclease family protein [Rhodococcus erythropolis SK121]
gi|229319863|gb|EEN85692.1| HNH endonuclease family protein [Rhodococcus erythropolis SK121]
Length=232
Score = 278 bits (710), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 132/187 (71%), Positives = 153/187 (82%), Gaps = 2/187 (1%)
Query 36 SGVETHPPNRHESASIWNRRRVLLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPV 95
S +E PP+R W +RRVLLLN TYEPLTAL RRA+V++ CGKAD VHED GPV
Sbjct 48 SHLEMFPPDR--VVPEWVKRRVLLLNVTYEPLTALPARRAVVLMACGKADTVHEDEQGPV 105
Query 96 IHSATRSILVPSVIQLRSYVRVPYRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRS 155
+HSA S+ VPSVI+LR+YVRVPYRAR+PMTRAALMHRD F CAYCG KA+T+DHVVPRS
Sbjct 106 VHSADWSVQVPSVIRLRTYVRVPYRARIPMTRAALMHRDHFRCAYCGAKAETIDHVVPRS 165
Query 156 RGGAHSWENCVACCSPCNHRKGDRLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWAR 215
RGG HSWENCVACC+PCNHRK D++L+ELGW LR +PP+GPHWRLL+A KEL P+W
Sbjct 166 RGGGHSWENCVACCAPCNHRKADKMLSELGWTLRAELVPPSGPHWRLLAATKELHPAWMP 225
Query 216 YLGEGAA 222
YLG GAA
Sbjct 226 YLGVGAA 232
>gi|54023280|ref|YP_117522.1| putative endonuclease [Nocardia farcinica IFM 10152]
gi|54014788|dbj|BAD56158.1| putative endonuclease [Nocardia farcinica IFM 10152]
Length=243
Score = 276 bits (705), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 129/182 (71%), Positives = 149/182 (82%), Gaps = 0/182 (0%)
Query 41 HPPNRHESASIWNRRRVLLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSAT 100
H P + W++RRVLLLN+TYEPLTALS RRA+V++IC KAD VH +P GPV+HSA
Sbjct 62 HSPTTDTPSINWSKRRVLLLNATYEPLTALSARRAVVLLICDKADTVHHNPEGPVVHSAG 121
Query 101 RSILVPSVIQLRSYVRVPYRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAH 160
+ VPSVI+LR+YVRVPYRARVPMTRAALMHRDR+ C YCGGKA+T+DHVVPRSRGG H
Sbjct 122 AEVAVPSVIRLRTYVRVPYRARVPMTRAALMHRDRYRCGYCGGKAETIDHVVPRSRGGEH 181
Query 161 SWENCVACCSPCNHRKGDRLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEG 220
SWENCVA C+PCNHRK D+LL+ELGW LR + P GPHWRLLS ELDP W +YLGEG
Sbjct 182 SWENCVASCAPCNHRKADKLLSELGWTLRAPLVSPKGPHWRLLSTTAELDPVWLQYLGEG 241
Query 221 AA 222
AA
Sbjct 242 AA 243
>gi|262201969|ref|YP_003273177.1| HNH endonuclease [Gordonia bronchialis DSM 43247]
gi|262085316|gb|ACY21284.1| HNH endonuclease [Gordonia bronchialis DSM 43247]
Length=205
Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 123/196 (63%), Positives = 151/196 (78%), Gaps = 0/196 (0%)
Query 27 HSVHSHRLASGVETHPPNRHESASIWNRRRVLLLNSTYEPLTALSMRRAIVMVICGKADV 86
H V R A + PP+ ++W RRRVLLLN+TYEPLTA+S+RRA+V+++ +AD+
Sbjct 10 HRVRVLRPAGDHDAPPPSVERPGAMWGRRRVLLLNATYEPLTAISIRRAVVLILRERADI 69
Query 87 VHEDPSGPVIHSATRSILVPSVIQLRSYVRVPYRARVPMTRAALMHRDRFCCAYCGGKAD 146
+H D G +HSA ++ VPSVI+LR+YVRVPYRA VPMTR ALM RDRF CAYCGG+A
Sbjct 70 IHADDGGLAVHSAQTTVPVPSVIRLRTYVRVPYRAVVPMTRTALMRRDRFRCAYCGGRAT 129
Query 147 TVDHVVPRSRGGAHSWENCVACCSPCNHRKGDRLLTELGWALRRAPLPPTGPHWRLLSAV 206
T+DHVVPRSRGG H W+NCVACC+ CNHRK DRLL ELGW LR P+ P G HWRLL++V
Sbjct 130 TIDHVVPRSRGGQHGWDNCVACCAGCNHRKADRLLGELGWTLRTVPIVPKGGHWRLLASV 189
Query 207 KELDPSWARYLGEGAA 222
KE+DP+W RYL GAA
Sbjct 190 KEIDPAWERYLDAGAA 205
>gi|256375279|ref|YP_003098939.1| HNH endonuclease [Actinosynnema mirum DSM 43827]
gi|255919582|gb|ACU35093.1| HNH endonuclease [Actinosynnema mirum DSM 43827]
Length=220
Score = 258 bits (660), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 118/171 (70%), Positives = 143/171 (84%), Gaps = 0/171 (0%)
Query 52 WNRRRVLLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQL 111
W RR+VLLLN+T+EPLTAL +RRA+V+V+CGKA+VVH DP G V+HS+T +LVPSVI+L
Sbjct 50 WGRRKVLLLNTTFEPLTALPLRRAVVLVVCGKAEVVHGDPDGTVLHSSTAEVLVPSVIRL 109
Query 112 RSYVRVPYRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSP 171
++VRVPYR RVP+TRA LMHRDR+ CAYCGG+A+T+DHVVPRSRGG H+W NCVACC+
Sbjct 110 SNHVRVPYRGRVPLTRAGLMHRDRYRCAYCGGRAETIDHVVPRSRGGPHTWTNCVACCAK 169
Query 172 CNHRKGDRLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 222
CNHRK D+LL+ELGW LR P P GPHWRLL+ V + DP W YLGE AA
Sbjct 170 CNHRKADKLLSELGWRLRVVPAAPRGPHWRLLAGVTDADPQWLPYLGEPAA 220
>gi|343927547|ref|ZP_08767017.1| hypothetical protein GOALK_095_00270 [Gordonia alkanivorans NBRC
16433]
gi|343762535|dbj|GAA13943.1| hypothetical protein GOALK_095_00270 [Gordonia alkanivorans NBRC
16433]
Length=188
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 114/171 (67%), Positives = 142/171 (84%), Gaps = 0/171 (0%)
Query 52 WNRRRVLLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQL 111
W RRRVLLLN+TYEPL+A+++RRA+V+++ G+AD+VH D SG HSA ++ VP+VI+L
Sbjct 18 WTRRRVLLLNATYEPLSAVTIRRAVVLILRGRADMVHADESGGAFHSAATAVPVPTVIRL 77
Query 112 RSYVRVPYRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSP 171
R+YVRVPYRA VPMTRAALMHRDRF C YC A T+DHVVPRSRGGAH+WENCVACC+
Sbjct 78 RNYVRVPYRASVPMTRAALMHRDRFRCGYCRKPATTIDHVVPRSRGGAHNWENCVACCAS 137
Query 172 CNHRKGDRLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 222
CNHRK DRL+TELGW LR P+ P G HW L++AVK++DP+W +Y+ GAA
Sbjct 138 CNHRKADRLITELGWTLRNRPVAPKGRHWGLIAAVKDIDPAWMQYIDAGAA 188
>gi|257055232|ref|YP_003133064.1| restriction endonuclease [Saccharomonospora viridis DSM 43017]
gi|256585104|gb|ACU96237.1| restriction endonuclease [Saccharomonospora viridis DSM 43017]
Length=166
Score = 249 bits (637), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 116/166 (70%), Positives = 140/166 (85%), Gaps = 0/166 (0%)
Query 57 VLLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVR 116
+LLLN+T+EPLTAL +RRAIV+++CGKA++VHEDP+G ++ SAT ++ VPSVI+L YVR
Sbjct 1 MLLLNATFEPLTALPLRRAIVLLVCGKAEIVHEDPTGLLLRSATMTVGVPSVIRLSRYVR 60
Query 117 VPYRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRK 176
VPYR RVP+TRA LM+RDRF CAYCGGKA+T+DHVVPRSRGGAHSWENCVACC+ CNHRK
Sbjct 61 VPYRTRVPLTRAGLMYRDRFRCAYCGGKAETIDHVVPRSRGGAHSWENCVACCAKCNHRK 120
Query 177 GDRLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 222
D+ L+ELGW LR P P GPHW+LL+ KE DP W RYLG AA
Sbjct 121 ADKSLSELGWRLRVVPREPRGPHWKLLAHAKEADPLWQRYLGMPAA 166
>gi|300788655|ref|YP_003768946.1| HNH endonuclease [Amycolatopsis mediterranei U32]
gi|299798169|gb|ADJ48544.1| HNH endonuclease [Amycolatopsis mediterranei U32]
gi|340530268|gb|AEK45473.1| HNH endonuclease [Amycolatopsis mediterranei S699]
Length=165
Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 113/165 (69%), Positives = 136/165 (83%), Gaps = 0/165 (0%)
Query 57 VLLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVR 116
+LLLN+T+EPLTAL +RRA+V+V+CGKA+VVH DP G +HSA S+ VPSVI+L +YVR
Sbjct 1 MLLLNATFEPLTALPLRRAVVLVMCGKAEVVHGDPGGIELHSAKVSLPVPSVIRLSTYVR 60
Query 117 VPYRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRK 176
VPYRA+VP+TRA LMHRDR+ CAYCGG+A+T+DHV+PRSRGG HSW NCVACC+ CNHRK
Sbjct 61 VPYRAQVPLTRAGLMHRDRYRCAYCGGRAETIDHVIPRSRGGPHSWTNCVACCAKCNHRK 120
Query 177 GDRLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGA 221
DRLL+E+GW LR P P GPHWRLL+ KE DP W YLG A
Sbjct 121 ADRLLSEIGWRLRIVPRAPHGPHWRLLAHSKEADPLWRPYLGSAA 165
>gi|302529048|ref|ZP_07281390.1| HNH endonuclease [Streptomyces sp. AA4]
gi|302437943|gb|EFL09759.1| HNH endonuclease [Streptomyces sp. AA4]
Length=163
Score = 236 bits (601), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 111/163 (69%), Positives = 134/163 (83%), Gaps = 0/163 (0%)
Query 59 LLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVRVP 118
+LN+T+EPLTA+ MRRA+V+V+CGKA+VVH DP G +H+AT S+ VPSVI+L +YVRVP
Sbjct 1 MLNATFEPLTAVPMRRAVVLVMCGKAEVVHGDPGGVELHAATVSLPVPSVIRLSTYVRVP 60
Query 119 YRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRKGD 178
YRA+VP+TRA LMHRDR CAYCGG+A+T+DHVVPRS+GG HSW NCVACC+ CNHRK D
Sbjct 61 YRAQVPLTRAGLMHRDRHRCAYCGGRAETIDHVVPRSKGGPHSWTNCVACCAKCNHRKAD 120
Query 179 RLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGA 221
RLL+E+GW LR P P GPHWRLL+ KE DP W YLG A
Sbjct 121 RLLSEIGWRLRVVPRAPHGPHWRLLAHSKEADPLWRPYLGSAA 163
>gi|333918739|ref|YP_004492320.1| HNH endonuclease [Amycolicicoccus subflavus DQS3-9A1]
gi|333480960|gb|AEF39520.1| HNH endonuclease [Amycolicicoccus subflavus DQS3-9A1]
Length=229
Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 115/207 (56%), Positives = 142/207 (69%), Gaps = 7/207 (3%)
Query 18 GVTGPASCLHSVHSHRLASGVETHPP-------NRHESASIWNRRRVLLLNSTYEPLTAL 70
GVT + H LA E+ PP R W RRVLLLN++YEPLT +
Sbjct 17 GVTPNEWVPRANHGDHLAIAHESPPPAEAVPEAQRRAPMRGWAARRVLLLNASYEPLTTV 76
Query 71 SMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVRVPYRARVPMTRAAL 130
+RRA+V+++ +A+++H DP+G V+HSA R + VPSVI+L YV VPY ARVP+TRAAL
Sbjct 77 PVRRALVLMLRNRAEMLHSDPAGTVVHSAGRQLYVPSVIRLTVYVHVPYIARVPLTRAAL 136
Query 131 MHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRKGDRLLTELGWALRR 190
M RDRF C YCG KADT+DHVVPRSRGG H WENCVACC+ CNH+K DRLL+ELGW+LR
Sbjct 137 MQRDRFRCGYCGAKADTIDHVVPRSRGGEHVWENCVACCARCNHKKADRLLSELGWSLRT 196
Query 191 APLPPTGPHWRLLSAVKELDPSWARYL 217
P PP G HW L+S + DP W Y+
Sbjct 197 IPRPPAGRHWYLVSKIDTFDPVWGDYV 223
>gi|296270505|ref|YP_003653137.1| HNH endonuclease [Thermobispora bispora DSM 43833]
gi|296093292|gb|ADG89244.1| HNH endonuclease [Thermobispora bispora DSM 43833]
Length=169
Score = 228 bits (582), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 106/168 (64%), Positives = 133/168 (80%), Gaps = 0/168 (0%)
Query 55 RRVLLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSY 114
R+VLLLN+TYEPLT LS+ RA+V+V+ KA+VVH D G ++ SAT ++LVPSVI+LR Y
Sbjct 2 RQVLLLNATYEPLTTLSLHRAVVLVLREKAEVVHHDGRGAMLRSATMTLLVPSVIRLRRY 61
Query 115 VRVPYRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNH 174
VR+PYR+R+P+TRAALM RD + CAYCG +A+T+DH+VPRSRGG H+WENCVA C+ CNH
Sbjct 62 VRIPYRSRIPLTRAALMRRDNYRCAYCGQRAETIDHIVPRSRGGQHTWENCVASCAACNH 121
Query 175 RKGDRLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 222
+K D+LL ELGW LR P P G HWRL+ A + DP WA YL E AA
Sbjct 122 KKADKLLEELGWTLRVTPAVPRGAHWRLIGAQFDGDPQWAPYLNEWAA 169
>gi|134097921|ref|YP_001103582.1| HNH endonuclease [Saccharopolyspora erythraea NRRL 2338]
gi|291009510|ref|ZP_06567483.1| HNH endonuclease [Saccharopolyspora erythraea NRRL 2338]
gi|133910544|emb|CAM00657.1| HNH endonuclease [Saccharopolyspora erythraea NRRL 2338]
Length=164
Score = 228 bits (580), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 108/164 (66%), Positives = 132/164 (81%), Gaps = 0/164 (0%)
Query 59 LLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVRVP 118
+LN+T+EPLTAL +RRAIV+++CGKA+VVH D +G V+HSAT S+ VPSVI+L ++VRVP
Sbjct 1 MLNTTFEPLTALPLRRAIVLIVCGKAEVVHGDSAGMVLHSATSSVEVPSVIRLSNFVRVP 60
Query 119 YRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRKGD 178
YR RVP+TRAALM RD C YCGG+A+T+DHVVPRSRGG H+WENCVA C+ CNHRK D
Sbjct 61 YRGRVPLTRAALMLRDNHRCVYCGGRAETIDHVVPRSRGGPHAWENCVASCTKCNHRKAD 120
Query 179 RLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 222
+ L+ELGW L AP P G HWRLL+ + E DP W YLGE AA
Sbjct 121 KTLSELGWRLPVAPHAPRGRHWRLLAGLSETDPLWLPYLGEPAA 164
>gi|271968570|ref|YP_003342766.1| HNH endonuclease [Streptosporangium roseum DSM 43021]
gi|270511745|gb|ACZ90023.1| HNH endonuclease [Streptosporangium roseum DSM 43021]
Length=169
Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 106/168 (64%), Positives = 130/168 (78%), Gaps = 0/168 (0%)
Query 55 RRVLLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSY 114
R+VLLLN+TYEPLT LS+ RA+V+V+ KADVVH D G V SA+R++ VPSVI+LR Y
Sbjct 2 RQVLLLNATYEPLTTLSLHRAVVLVLREKADVVHRDGRGAVFRSASRTLDVPSVIRLRRY 61
Query 115 VRVPYRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNH 174
VR+PYR+R+P+TR ALM RD + CAYCG +A+T+DHV+PRSRGG H+WENCVA C+ CNH
Sbjct 62 VRIPYRSRIPLTRTALMRRDDYRCAYCGQRAETIDHVIPRSRGGPHTWENCVASCTSCNH 121
Query 175 RKGDRLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 222
RK DR+L ELGW L P+ P G HWRL+ A DP WA YL E AA
Sbjct 122 RKADRMLEELGWTLSVVPVVPRGVHWRLIGAHSVGDPLWAPYLAESAA 169
>gi|269125590|ref|YP_003298960.1| HNH endonuclease [Thermomonospora curvata DSM 43183]
gi|268310548|gb|ACY96922.1| HNH endonuclease [Thermomonospora curvata DSM 43183]
Length=169
Score = 222 bits (565), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 104/168 (62%), Positives = 128/168 (77%), Gaps = 0/168 (0%)
Query 55 RRVLLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSY 114
R+VLLLN++YEPLT L +RRA+ +V+ KA+VVH D +G V+ SA+ + VPSVI+LR Y
Sbjct 2 RQVLLLNASYEPLTTLPLRRAVCLVLRDKAEVVHHDSTGAVLRSASTVMEVPSVIRLRRY 61
Query 115 VRVPYRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNH 174
VR+P+R RVP+TRAALM RD F CAYCG +A+T+DHV+PRSRGG H WENCVA C PCNH
Sbjct 62 VRIPFRTRVPLTRAALMRRDNFRCAYCGHRAETIDHVIPRSRGGKHVWENCVASCGPCNH 121
Query 175 RKGDRLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 222
RK DRLL ELGW LR P P G HWRL+ + DP WA Y+ + AA
Sbjct 122 RKADRLLEELGWVLRVTPQVPRGAHWRLIGITDDSDPQWAPYVTQYAA 169
>gi|297562359|ref|YP_003681333.1| HNH endonuclease [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
gi|296846807|gb|ADH68827.1| HNH endonuclease [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
Length=183
Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 103/169 (61%), Positives = 125/169 (74%), Gaps = 0/169 (0%)
Query 54 RRRVLLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRS 113
RR VLLLN+++EPLT L +RRAI++V+ KA+VVH+D +G ++HSATRS VPSVI+LR
Sbjct 15 RRHVLLLNASFEPLTTLPLRRAILLVLREKAEVVHQDDAGAILHSATRSYDVPSVIRLRR 74
Query 114 YVRVPYRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCN 173
Y+ VPY RVP+TR ALM RDR C YCG KA+T+DHV+PRSRGGAH WEN VA C PCN
Sbjct 75 YISVPYSRRVPLTRVALMRRDRHTCGYCGKKAETIDHVIPRSRGGAHVWENVVAACKPCN 134
Query 174 HRKGDRLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 222
HRK D+ L ELGW L P P GPHWRL++ DP W Y+ AA
Sbjct 135 HRKADKFLDELGWELHVTPKVPKGPHWRLINGDLHGDPQWEPYMAHLAA 183
>gi|72162610|ref|YP_290267.1| HNH nuclease [Thermobifida fusca YX]
gi|71916342|gb|AAZ56244.1| HNH nuclease [Thermobifida fusca YX]
Length=184
Score = 207 bits (528), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 97/165 (59%), Positives = 122/165 (74%), Gaps = 0/165 (0%)
Query 54 RRRVLLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRS 113
RR VLLLN++YEPLT + +RRA+++V+ KA+VVH D +G V+HS+T + VPSVI+L
Sbjct 16 RRHVLLLNASYEPLTTVPLRRAVLLVLREKAEVVHSDSTGAVLHSSTMAFSVPSVIRLLR 75
Query 114 YVRVPYRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCN 173
Y+RVPYR R+P+TR ALM RD + CAYC +A+T+DHV+PRSRGG H WEN VA C CN
Sbjct 76 YIRVPYRRRIPLTRVALMRRDGYHCAYCDRRAETIDHVIPRSRGGQHVWENVVAACRSCN 135
Query 174 HRKGDRLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLG 218
HRK DRLL ELGW LR P P G HWRL++ DP WA Y+
Sbjct 136 HRKADRLLEELGWKLRVTPTVPRGIHWRLINGDHHTDPLWAPYMA 180
>gi|319947987|ref|ZP_08022164.1| putative endonuclease [Dietzia cinnamea P4]
gi|319438333|gb|EFV93276.1| putative endonuclease [Dietzia cinnamea P4]
Length=203
Score = 203 bits (517), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 106/167 (64%), Positives = 128/167 (77%), Gaps = 0/167 (0%)
Query 56 RVLLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYV 115
RVLLLN++YE LTAL RRA+VM++ GKADVVHE P V+ S S+ VPSVI+LR YV
Sbjct 37 RVLLLNASYEALTALPARRAVVMLLGGKADVVHEHPVEVVVRSVDTSVRVPSVIRLREYV 96
Query 116 RVPYRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHR 175
R+PYR++VPMTRAALMHRD C YC KA T+DHVVPRSRGGAH+WENCVA C+PCNHR
Sbjct 97 RIPYRSQVPMTRAALMHRDGHRCGYCNAKATTIDHVVPRSRGGAHNWENCVASCAPCNHR 156
Query 176 KGDRLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYLGEGAA 222
K D+LL+ELGW L+ + P G WRL+S ++E+ P W YL AA
Sbjct 157 KADKLLSELGWELKVPLVAPRGRTWRLVSQLREIGPYWEDYLYLDAA 203
>gi|318060379|ref|ZP_07979102.1| hypothetical protein SSA3_20733 [Streptomyces sp. SA3_actG]
Length=227
Score = 178 bits (452), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 89/161 (56%), Positives = 113/161 (71%), Gaps = 3/161 (1%)
Query 57 VLLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVR 116
VL+LN++YEPL + +RRA+V+V+ KA + E +G +HSA+R++ PSV++L+ YVR
Sbjct 4 VLVLNASYEPLGVVPLRRALVLVLENKAQCLEE--TGAFLHSASRTVPAPSVVRLKRYVR 61
Query 117 VPYRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRK 176
VPYR VP+TR AL RD CAYCG A +VDHVVPRSRGG H+W+N VA C CNH K
Sbjct 62 VPYRGPVPLTRRALFARDGGKCAYCGSVATSVDHVVPRSRGGRHAWDNVVASCRRCNHTK 121
Query 177 GDRLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYL 217
DR L +LGW LR AP PPTG WR++ DPSW YL
Sbjct 122 ADRYLADLGWRLRHAPAPPTGLAWRII-GTGHRDPSWLPYL 161
>gi|333027063|ref|ZP_08455127.1| putative HNH endonuclease [Streptomyces sp. Tu6071]
gi|332746915|gb|EGJ77356.1| putative HNH endonuclease [Streptomyces sp. Tu6071]
Length=227
Score = 178 bits (451), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 89/161 (56%), Positives = 113/161 (71%), Gaps = 3/161 (1%)
Query 57 VLLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVR 116
VL+LN++YEPL + +RRA+V+V+ KA + E +G +HSA+R++ PSV++L+ YVR
Sbjct 4 VLVLNASYEPLGVVPLRRALVLVLENKAQCLEE--TGAFLHSASRTVPAPSVVRLKRYVR 61
Query 117 VPYRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRK 176
VPYR VP+TR AL RD CAYCG A +VDHVVPRSRGG H+W+N VA C CNH K
Sbjct 62 VPYRGPVPLTRRALFARDGGKCAYCGSVATSVDHVVPRSRGGRHAWDNVVASCRRCNHTK 121
Query 177 GDRLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYL 217
DR L +LGW LR AP PPTG WR++ DPSW YL
Sbjct 122 ADRYLADLGWRLRHAPAPPTGLAWRII-GTGHRDPSWLPYL 161
>gi|336177494|ref|YP_004582869.1| HNH endonuclease [Frankia symbiont of Datisca glomerata]
gi|334858474|gb|AEH08948.1| HNH endonuclease [Frankia symbiont of Datisca glomerata]
Length=171
Score = 177 bits (448), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/160 (54%), Positives = 115/160 (72%), Gaps = 3/160 (1%)
Query 58 LLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVRV 117
L+LN+TYEPL +S RRA+V+V+ KA +V +P V+HSAT ++ VP V++L +VRV
Sbjct 5 LVLNATYEPLCVVSQRRALVLVLTEKAVMV--EPGDKVLHSATYTVEVPVVVRLARFVRV 62
Query 118 PYRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRKG 177
PYR++VP+TR ++ RD C YCG A ++DHV+PRSRGGAH WEN VA C CNH K
Sbjct 63 PYRSQVPLTRKGVLARDHHRCVYCGAPATSLDHVIPRSRGGAHVWENVVAACGRCNHLKA 122
Query 178 DRLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYL 217
DR + +LGW LR AP P+G WR+L + + +DP W+RYL
Sbjct 123 DRAVADLGWRLRTAPRAPSGAAWRILGS-RRMDPRWSRYL 161
>gi|295838864|ref|ZP_06825797.1| HNH endonuclease [Streptomyces sp. SPB74]
gi|295827228|gb|EDY42346.2| HNH endonuclease [Streptomyces sp. SPB74]
Length=221
Score = 175 bits (444), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 88/161 (55%), Positives = 113/161 (71%), Gaps = 3/161 (1%)
Query 57 VLLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVR 116
VL+LN++YEPL + +RRA+V+V+ KA + E +G +HSA+R++ PSV++L+ YVR
Sbjct 4 VLVLNASYEPLGVVPLRRALVLVLENKAQCLEE--TGVFLHSASRTVPAPSVVRLKRYVR 61
Query 117 VPYRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRK 176
VPYR VP+TR AL RD CAYCG A +VDHVVPRSRGG H+W+N VA C CNH K
Sbjct 62 VPYRGPVPLTRRALFARDGGKCAYCGSVATSVDHVVPRSRGGRHAWDNVVASCRRCNHTK 121
Query 177 GDRLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYL 217
DR L +LGW LR AP PP+G WR++ DPSW YL
Sbjct 122 ADRYLADLGWRLRHAPAPPSGLAWRII-GTGHRDPSWLPYL 161
>gi|294812656|ref|ZP_06771299.1| Putative endonuclease [Streptomyces clavuligerus ATCC 27064]
gi|294325255|gb|EFG06898.1| Putative endonuclease [Streptomyces clavuligerus ATCC 27064]
Length=226
Score = 174 bits (441), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 92/181 (51%), Positives = 119/181 (66%), Gaps = 6/181 (3%)
Query 37 GVETHPPNRHESASIWNRRRVLLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVI 96
G PP E++++ + VL+LN++YEPL + +RRA+V+V+ KA + E SG +
Sbjct 35 GASHAPPAYKEASAVPH---VLVLNASYEPLGVVPLRRALVLVLENKALCLEE--SGAFL 89
Query 97 HSATRSILVPSVIQLRSYVRVPYRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSR 156
HSATR I PSV++L+ +VRVPYR VP+TR AL RD C YCGG A +VDHV+PRSR
Sbjct 90 HSATRIIAAPSVVRLKRFVRVPYRGPVPLTRKALFARDGGRCMYCGGVATSVDHVIPRSR 149
Query 157 GGAHSWENCVACCSPCNHRKGDRLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARY 216
GG H+W+N VA C CNH K DR L ELGW LR P PP+G WR++ DP W Y
Sbjct 150 GGQHAWDNVVAACRHCNHVKADRQLRELGWRLRHQPAPPSGLAWRII-GTGHRDPRWLPY 208
Query 217 L 217
L
Sbjct 209 L 209
>gi|325002396|ref|ZP_08123508.1| HNH endonuclease [Pseudonocardia sp. P1]
Length=217
Score = 172 bits (436), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 89/188 (48%), Positives = 118/188 (63%), Gaps = 5/188 (2%)
Query 30 HSHRLASGVETHPPNRHESASIWNRRRVLLLNSTYEPLTALSMRRAIVMVICGKADVVHE 89
H A G+E +A + RVLLLN+++EPL ++ +RAI +++ GKA+ + E
Sbjct 32 EDHLPAPGIEPL-----TTAPVPTGSRVLLLNASFEPLAVVTSKRAICLLLSGKAECLQE 86
Query 90 DPSGPVIHSATRSILVPSVIQLRSYVRVPYRARVPMTRAALMHRDRFCCAYCGGKADTVD 149
G HS + ++ PSV++L YVRVPYR VPMTRA ++ RD CAYC +ADT+D
Sbjct 87 ALEGTSFHSESLTLPAPSVLRLSRYVRVPYRRAVPMTRAGVLRRDSRRCAYCTKRADTID 146
Query 150 HVVPRSRGGAHSWENCVACCSPCNHRKGDRLLTELGWALRRAPLPPTGPHWRLLSAVKEL 209
HV+PRSRGGAHSWENCVA C CN RK DRL+ E+GW LR P PP +L E
Sbjct 147 HVIPRSRGGAHSWENCVAACKACNSRKADRLVEEIGWTLRTKPGPPKRNGAGVLVLAVEP 206
Query 210 DPSWARYL 217
P+W +L
Sbjct 207 LPAWEPWL 214
>gi|302545386|ref|ZP_07297728.1| HNH endonuclease [Streptomyces hygroscopicus ATCC 53653]
gi|302463004|gb|EFL26097.1| HNH endonuclease [Streptomyces himastatinicus ATCC 53653]
Length=179
Score = 172 bits (435), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 85/161 (53%), Positives = 113/161 (71%), Gaps = 3/161 (1%)
Query 57 VLLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVR 116
VL+LN++YEPL + +RRA+++V+ KA + + SG ++HSATR+I PSV++L+ +VR
Sbjct 4 VLVLNASYEPLGVVPLRRALILVLNDKA--ISLEDSGALMHSATRAIPAPSVVRLKRFVR 61
Query 117 VPYRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRK 176
VP+R VP+TR AL RD CAYCGG A +VDHV+PRSRGG H+WEN VA C CNH K
Sbjct 62 VPFRGPVPLTRRALFARDGGRCAYCGGVATSVDHVIPRSRGGQHTWENVVAACRRCNHVK 121
Query 177 GDRLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYL 217
DR + E+GW LR P PP+G WR++ DP W YL
Sbjct 122 ADRHVAEIGWRLRHQPAPPSGLAWRII-GTGHRDPRWLPYL 161
>gi|312198933|ref|YP_004018994.1| HNH endonuclease [Frankia sp. EuI1c]
gi|311230269|gb|ADP83124.1| HNH endonuclease [Frankia sp. EuI1c]
Length=171
Score = 172 bits (435), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 84/169 (50%), Positives = 118/169 (70%), Gaps = 7/169 (4%)
Query 58 LLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVRV 117
L+LN+TYEPL +S RRA+++V+ KA +V + G V+HSA ++ VP V++L +VRV
Sbjct 5 LVLNATYEPLCVVSQRRALILVLTDKAVMV--EAGGQVLHSAASAVEVPVVVRLARFVRV 62
Query 118 PYRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRKG 177
PYR++VP+TR ++ RD C YCG A ++DHV+PRSRGG H WEN VA C CNH K
Sbjct 63 PYRSQVPLTRKGVLARDHHRCVYCGAPATSLDHVIPRSRGGPHVWENVVAACGRCNHIKA 122
Query 178 DRLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARY----LGEGAA 222
DR + +LGW LR+AP P+G WR+L + + +DP W++Y LGE A+
Sbjct 123 DRAVADLGWRLRQAPRAPSGAAWRILGS-RRMDPRWSQYLNTDLGEAAS 170
>gi|331695690|ref|YP_004331929.1| HNH endonuclease [Pseudonocardia dioxanivorans CB1190]
gi|326950379|gb|AEA24076.1| HNH endonuclease [Pseudonocardia dioxanivorans CB1190]
Length=196
Score = 172 bits (435), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 89/162 (55%), Positives = 111/162 (69%), Gaps = 1/162 (0%)
Query 56 RVLLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYV 115
RVLLLN+++EPL ++ +RAIV+++ GKA+ V G HS ++ PSV++L YV
Sbjct 33 RVLLLNASFEPLAVVTAKRAIVLMLSGKAECVEAAIGGGAFHSENLTVPAPSVMRLSRYV 92
Query 116 RVPYRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHR 175
RVPYR VPMTRA ++ RD CAYCG +ADT+DHVVPRSRGG HSWENCVA C CN R
Sbjct 93 RVPYRRAVPMTRAGVLRRDGRRCAYCGVRADTIDHVVPRSRGGDHSWENCVAACRGCNSR 152
Query 176 KGDRLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYL 217
K DRLL ELGW L P PP+ L+ AV E P+W +L
Sbjct 153 KADRLLEELGWTLAVPPAPPSRAGGILVLAV-EPHPTWEPWL 193
>gi|326441189|ref|ZP_08215923.1| endonuclease [Streptomyces clavuligerus ATCC 27064]
Length=178
Score = 172 bits (435), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/161 (55%), Positives = 110/161 (69%), Gaps = 3/161 (1%)
Query 57 VLLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVR 116
VL+LN++YEPL + +RRA+V+V+ KA + E SG +HSATR I PSV++L+ +VR
Sbjct 4 VLVLNASYEPLGVVPLRRALVLVLENKALCLEE--SGAFLHSATRIIAAPSVVRLKRFVR 61
Query 117 VPYRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRK 176
VPYR VP+TR AL RD C YCGG A +VDHV+PRSRGG H+W+N VA C CNH K
Sbjct 62 VPYRGPVPLTRKALFARDGGRCMYCGGVATSVDHVIPRSRGGQHAWDNVVAACRHCNHVK 121
Query 177 GDRLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYL 217
DR L ELGW LR P PP+G WR++ DP W YL
Sbjct 122 ADRQLRELGWRLRHQPAPPSGLAWRII-GTGHRDPRWLPYL 161
>gi|337765776|emb|CCB74485.1| putative endonuclease [Streptomyces cattleya NRRL 8057]
Length=178
Score = 171 bits (434), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 87/161 (55%), Positives = 112/161 (70%), Gaps = 3/161 (1%)
Query 57 VLLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYVR 116
VL+LN++YEPL + +RRA+V+V+ KA + E SG ++HSATR++ PSV++L +VR
Sbjct 4 VLVLNASYEPLGVVPLRRALVLVLNNKAICLEE--SGALMHSATRALPAPSVVKLTKFVR 61
Query 117 VPYRARVPMTRAALMHRDRFCCAYCGGKADTVDHVVPRSRGGAHSWENCVACCSPCNHRK 176
VP+R VP+TR AL RD CAYCG A +VDHV+PRSRGG H+W+N VA C CNH K
Sbjct 62 VPFRGPVPLTRRALFARDGGKCAYCGCAATSVDHVIPRSRGGKHTWDNVVAACRRCNHVK 121
Query 177 GDRLLTELGWALRRAPLPPTGPHWRLLSAVKELDPSWARYL 217
DR +TELGW LR P PPTG WR++ DP W YL
Sbjct 122 ADRHITELGWRLRHQPAPPTGLAWRII-GTGHRDPRWLPYL 161
Lambda K H
0.322 0.134 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 279760868288
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40