BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2472

Length=97
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609609|ref|NP_216988.1|  hypothetical protein Rv2472 [Mycoba...   192    1e-47
gi|308369728|ref|ZP_07666792.1|  hypothetical protein TMBG_01013 ...   191    5e-47
gi|15841997|ref|NP_337034.1|  hypothetical protein MT2547.1 [Myco...   188    2e-46
gi|77454741|ref|YP_345609.1|  hypothetical protein pREL1_0174 [Rh...  42.0    0.029
gi|229489909|ref|ZP_04383763.1|  conserved hypothetical protein [...  38.9    0.25 
gi|15840542|ref|NP_335579.1|  hypothetical protein MT1135 [Mycoba...  38.5    0.36 
gi|33867142|ref|NP_898700.1|  hypothetical protein PBD2.085 [Rhod...  38.1    0.43 
gi|15608243|ref|NP_215619.1|  hypothetical protein Rv1103c [Mycob...  37.4    0.80 
gi|260591010|ref|ZP_05856468.1|  aspartate carbamoyltransferase [...  35.8    2.4  
gi|307564629|ref|ZP_07627163.1|  aspartate carbamoyltransferase [...  35.4    2.7  
gi|345044365|gb|EGW48405.1|  aspartate carbamoyltransferase [Prev...  35.0    4.2  
gi|288802199|ref|ZP_06407639.1|  aspartate carbamoyltransferase [...  34.7    4.6  
gi|302346589|ref|YP_003814887.1|  aspartate carbamoyltransferase ...  34.7    5.5  


>gi|15609609|ref|NP_216988.1| hypothetical protein Rv2472 [Mycobacterium tuberculosis H37Rv]
 gi|31793653|ref|NP_856146.1| hypothetical protein Mb2499 [Mycobacterium bovis AF2122/97]
 gi|121638355|ref|YP_978579.1| hypothetical protein BCG_2492 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 46 more sequence titles
 Length=97

 Score =  192 bits (489),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 97/97 (100%), Positives = 97/97 (100%), Gaps = 0/97 (0%)

Query  1   MMMRIAVRLPGEVITFVDSEVSQIRIPSRRAAVVLRASNASDAAILTATEPNHHLDALAG  60
           MMMRIAVRLPGEVITFVDSEVSQIRIPSRRAAVVLRASNASDAAILTATEPNHHLDALAG
Sbjct  1   MMMRIAVRLPGEVITFVDSEVSQIRIPSRRAAVVLRASNASDAAILTATEPNHHLDALAG  60

Query  61  QAAKLAPTSIDAAHPARPARRDPCLYPRTGQALPRTG  97
           QAAKLAPTSIDAAHPARPARRDPCLYPRTGQALPRTG
Sbjct  61  QAAKLAPTSIDAAHPARPARRDPCLYPRTGQALPRTG  97


>gi|308369728|ref|ZP_07666792.1| hypothetical protein TMBG_01013 [Mycobacterium tuberculosis SUMu002]
 gi|308326663|gb|EFP15514.1| hypothetical protein TMBG_01013 [Mycobacterium tuberculosis SUMu002]
Length=96

 Score =  191 bits (484),  Expect = 5e-47, Method: Compositional matrix adjust.
 Identities = 96/96 (100%), Positives = 96/96 (100%), Gaps = 0/96 (0%)

Query  2   MMRIAVRLPGEVITFVDSEVSQIRIPSRRAAVVLRASNASDAAILTATEPNHHLDALAGQ  61
           MMRIAVRLPGEVITFVDSEVSQIRIPSRRAAVVLRASNASDAAILTATEPNHHLDALAGQ
Sbjct  1   MMRIAVRLPGEVITFVDSEVSQIRIPSRRAAVVLRASNASDAAILTATEPNHHLDALAGQ  60

Query  62  AAKLAPTSIDAAHPARPARRDPCLYPRTGQALPRTG  97
           AAKLAPTSIDAAHPARPARRDPCLYPRTGQALPRTG
Sbjct  61  AAKLAPTSIDAAHPARPARRDPCLYPRTGQALPRTG  96


>gi|15841997|ref|NP_337034.1| hypothetical protein MT2547.1 [Mycobacterium tuberculosis CDC1551]
 gi|289754581|ref|ZP_06513959.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|308232143|ref|ZP_07664011.1| hypothetical protein TMAG_03031 [Mycobacterium tuberculosis SUMu001]
 14 more sequence titles
 Length=95

 Score =  188 bits (477),  Expect = 2e-46, Method: Compositional matrix adjust.
 Identities = 95/95 (100%), Positives = 95/95 (100%), Gaps = 0/95 (0%)

Query  3   MRIAVRLPGEVITFVDSEVSQIRIPSRRAAVVLRASNASDAAILTATEPNHHLDALAGQA  62
           MRIAVRLPGEVITFVDSEVSQIRIPSRRAAVVLRASNASDAAILTATEPNHHLDALAGQA
Sbjct  1   MRIAVRLPGEVITFVDSEVSQIRIPSRRAAVVLRASNASDAAILTATEPNHHLDALAGQA  60

Query  63  AKLAPTSIDAAHPARPARRDPCLYPRTGQALPRTG  97
           AKLAPTSIDAAHPARPARRDPCLYPRTGQALPRTG
Sbjct  61  AKLAPTSIDAAHPARPARRDPCLYPRTGQALPRTG  95


>gi|77454741|ref|YP_345609.1| hypothetical protein pREL1_0174 [Rhodococcus erythropolis PR4]
 gi|77019741|dbj|BAE46117.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=73

 Score = 42.0 bits (97),  Expect = 0.029, Method: Compositional matrix adjust.
 Identities = 22/37 (60%), Positives = 28/37 (76%), Gaps = 1/37 (2%)

Query  1   MMMRIAVRLPGEVITFVDSEVSQIRIPSRRAAVVLRA  37
           M  +IAVRLPGE++ F+DSEV + R  S RA +VLRA
Sbjct  1   MSTQIAVRLPGEIVAFLDSEVREGRAKS-RAELVLRA  36


>gi|229489909|ref|ZP_04383763.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
 gi|229323166|gb|EEN88933.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=71

 Score = 38.9 bits (89),  Expect = 0.25, Method: Compositional matrix adjust.
 Identities = 22/37 (60%), Positives = 27/37 (73%), Gaps = 1/37 (2%)

Query  1   MMMRIAVRLPGEVITFVDSEVSQIRIPSRRAAVVLRA  37
           M  +IAVRLP +++ F+DSEVS  R  S RA VVLRA
Sbjct  1   MSTQIAVRLPEDIVAFLDSEVSGGRAKS-RAQVVLRA  36


>gi|15840542|ref|NP_335579.1| hypothetical protein MT1135 [Mycobacterium tuberculosis CDC1551]
 gi|308371865|ref|ZP_07426498.2| antitoxin [Mycobacterium tuberculosis SUMu004]
 gi|308374211|ref|ZP_07435212.2| antitoxin [Mycobacterium tuberculosis SUMu006]
 11 more sequence titles
 Length=78

 Score = 38.5 bits (88),  Expect = 0.36, Method: Compositional matrix adjust.
 Identities = 30/74 (41%), Positives = 35/74 (48%), Gaps = 8/74 (10%)

Query  1   MMMRIAVRLPGEVITFVDSEVSQIRIPSRRAAV-------VLRASNASDAAIL-TATEPN  52
           M  +IAVRLP E++ F+D EV      SR A V         R     DA IL T T   
Sbjct  1   MSTQIAVRLPDEIVAFIDDEVRGQHARSRAAVVLRALERERRRRLAERDAEILATNTSAT  60

Query  53  HHLDALAGQAAKLA  66
             LD LAG  A+ A
Sbjct  61  GDLDTLAGHCARTA  74


>gi|33867142|ref|NP_898700.1| hypothetical protein PBD2.085 [Rhodococcus erythropolis]
 gi|33668976|gb|AAP73970.1| hypothetical protein PBD2.085 [Rhodococcus erythropolis]
Length=86

 Score = 38.1 bits (87),  Expect = 0.43, Method: Compositional matrix adjust.
 Identities = 22/37 (60%), Positives = 27/37 (73%), Gaps = 1/37 (2%)

Query  1   MMMRIAVRLPGEVITFVDSEVSQIRIPSRRAAVVLRA  37
           M  +IAVRLP +++ F+DSEVS  R  S RA VVLRA
Sbjct  16  MSTQIAVRLPEDIVAFLDSEVSGGRAKS-RAQVVLRA  51


>gi|15608243|ref|NP_215619.1| hypothetical protein Rv1103c [Mycobacterium tuberculosis H37Rv]
 gi|31792296|ref|NP_854789.1| hypothetical protein Mb1133c [Mycobacterium bovis AF2122/97]
 gi|121637034|ref|YP_977257.1| hypothetical protein BCG_1163c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 64 more sequence titles
 Length=106

 Score = 37.4 bits (85),  Expect = 0.80, Method: Compositional matrix adjust.
 Identities = 29/71 (41%), Positives = 34/71 (48%), Gaps = 8/71 (11%)

Query  4    RIAVRLPGEVITFVDSEVSQIRIPSRRAAV-------VLRASNASDAAIL-TATEPNHHL  55
            +IAVRLP E++ F+D EV      SR A V         R     DA IL T T     L
Sbjct  32   QIAVRLPDEIVAFIDDEVRGQHARSRAAVVLRALERERRRRLAERDAEILATNTSATGDL  91

Query  56   DALAGQAAKLA  66
            D LAG  A+ A
Sbjct  92   DTLAGHCARTA  102


>gi|260591010|ref|ZP_05856468.1| aspartate carbamoyltransferase [Prevotella veroralis F0319]
 gi|260536875|gb|EEX19492.1| aspartate carbamoyltransferase [Prevotella veroralis F0319]
Length=381

 Score = 35.8 bits (81),  Expect = 2.4, Method: Composition-based stats.
 Identities = 23/73 (32%), Positives = 36/73 (50%), Gaps = 9/73 (12%)

Query  6    AVRLPGEVITFVDSEVSQIRIPSRRAAVVLRASNASDAAILTATEPNHHLDALAGQAAKL  65
            A RL   VI F D++VS +         +L  SN +DA ++      H+++  A  A+++
Sbjct  127  ANRLGARVIGFTDAKVSSVSKGETLKDTILMVSNYADAIVM-----RHYIEGAAQYASEV  181

Query  66   APTSI----DAAH  74
            AP  I    D AH
Sbjct  182  APVPIINAGDGAH  194


>gi|307564629|ref|ZP_07627163.1| aspartate carbamoyltransferase [Prevotella amnii CRIS 21A-A]
 gi|307346674|gb|EFN91977.1| aspartate carbamoyltransferase [Prevotella amnii CRIS 21A-A]
Length=315

 Score = 35.4 bits (80),  Expect = 2.7, Method: Composition-based stats.
 Identities = 23/73 (32%), Positives = 37/73 (51%), Gaps = 9/73 (12%)

Query  6    AVRLPGEVITFVDSEVSQIRIPSRRAAVVLRASNASDAAILTATEPNHHLDALAGQAAKL  65
            A RL  +VI F D++VS +         +L  SN +DA ++      H+++  A  A+++
Sbjct  60   ANRLGAKVIGFTDAKVSSVSKGETLKDTILMVSNYADAIVM-----RHYIEGAAQYASEI  114

Query  66   APTSI----DAAH  74
            AP  I    D AH
Sbjct  115  APVPIINAGDGAH  127


>gi|345044365|gb|EGW48405.1| aspartate carbamoyltransferase [Prevotella sp. C561]
Length=315

 Score = 35.0 bits (79),  Expect = 4.2, Method: Composition-based stats.
 Identities = 23/73 (32%), Positives = 36/73 (50%), Gaps = 9/73 (12%)

Query  6    AVRLPGEVITFVDSEVSQIRIPSRRAAVVLRASNASDAAILTATEPNHHLDALAGQAAKL  65
            A RL   VI F D++VS +         +L  SN +DA ++      H+++  A  A+++
Sbjct  60   ANRLGARVIGFTDAKVSSVSKGETLKDTILMVSNYADAIVM-----RHYIEGAAQYASEV  114

Query  66   APTSI----DAAH  74
            AP  I    D AH
Sbjct  115  APVPIINAGDGAH  127


>gi|288802199|ref|ZP_06407639.1| aspartate carbamoyltransferase [Prevotella melaninogenica D18]
 gi|288335166|gb|EFC73601.1| aspartate carbamoyltransferase [Prevotella melaninogenica D18]
Length=315

 Score = 34.7 bits (78),  Expect = 4.6, Method: Composition-based stats.
 Identities = 23/73 (32%), Positives = 36/73 (50%), Gaps = 9/73 (12%)

Query  6    AVRLPGEVITFVDSEVSQIRIPSRRAAVVLRASNASDAAILTATEPNHHLDALAGQAAKL  65
            A RL   VI F D++VS +         +L  SN +DA ++      H+++  A  A+++
Sbjct  60   ANRLGARVIGFTDAKVSSVSKGETLKDTILMVSNYADAIVM-----RHYIEGAAQYASEV  114

Query  66   APTSI----DAAH  74
            AP  I    D AH
Sbjct  115  APVPIINAGDGAH  127


>gi|302346589|ref|YP_003814887.1| aspartate carbamoyltransferase [Prevotella melaninogenica ATCC 
25845]
 gi|302151100|gb|ADK97361.1| aspartate carbamoyltransferase [Prevotella melaninogenica ATCC 
25845]
Length=315

 Score = 34.7 bits (78),  Expect = 5.5, Method: Composition-based stats.
 Identities = 23/73 (32%), Positives = 36/73 (50%), Gaps = 9/73 (12%)

Query  6    AVRLPGEVITFVDSEVSQIRIPSRRAAVVLRASNASDAAILTATEPNHHLDALAGQAAKL  65
            A RL   VI F D++VS +         +L  SN +DA ++      H+++  A  A+++
Sbjct  60   ANRLGARVIGFTDAKVSSVSKGETLKDTILMVSNYADAIVM-----RHYIEGAAQYASEV  114

Query  66   APTSI----DAAH  74
            AP  I    D AH
Sbjct  115  APMPIINAGDGAH  127



Lambda     K      H
   0.320    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 130655526400


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40