BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2478c
Length=161
Score E
Sequences producing significant alignments: (Bits) Value
gi|15842004|ref|NP_337041.1| hypothetical protein MT2553 [Mycoba... 320 5e-86
gi|308232147|ref|ZP_07415084.2| hypothetical protein TMAG_03038 ... 320 5e-86
gi|148823677|ref|YP_001288431.1| hypothetical protein TBFG_12502... 320 5e-86
gi|15609615|ref|NP_216994.1| hypothetical protein Rv2478c [Mycob... 318 1e-85
gi|340627492|ref|YP_004745944.1| hypothetical protein MCAN_25171... 317 4e-85
gi|240171566|ref|ZP_04750225.1| hypothetical protein MkanA1_1978... 251 3e-65
gi|118619010|ref|YP_907342.1| hypothetical protein MUL_3758 [Myc... 225 2e-57
gi|183983805|ref|YP_001852096.1| single-stranded DNA-binding pro... 224 3e-57
gi|254821445|ref|ZP_05226446.1| hypothetical protein MintA_16021... 222 1e-56
gi|118465023|ref|YP_880923.1| hypothetical protein MAV_1694 [Myc... 215 2e-54
gi|41408394|ref|NP_961230.1| hypothetical protein MAP2296c [Myco... 215 2e-54
gi|342857874|ref|ZP_08714530.1| hypothetical protein MCOL_03330 ... 209 1e-52
gi|296170453|ref|ZP_06852041.1| single-stranded DNA-binding prot... 209 2e-52
gi|108800582|ref|YP_640779.1| hypothetical protein Mmcs_3616 [My... 185 2e-45
gi|120405026|ref|YP_954855.1| hypothetical protein Mvan_4072 [My... 183 7e-45
gi|145223154|ref|YP_001133832.1| hypothetical protein Mflv_2567 ... 177 5e-43
gi|169628649|ref|YP_001702298.1| hypothetical protein MAB_1559 [... 169 2e-40
gi|333990070|ref|YP_004522684.1| single-stranded DNA-binding pro... 164 5e-39
gi|118468704|ref|YP_888962.1| hypothetical protein MSMEG_4701 [M... 162 2e-38
gi|289751084|ref|ZP_06510462.1| conserved hypothetical protein [... 149 2e-34
gi|312140392|ref|YP_004007728.1| single-strand binding protein [... 114 4e-24
gi|226307324|ref|YP_002767284.1| single-stranded DNA-binding pro... 114 4e-24
gi|325675998|ref|ZP_08155681.1| single-strand binding protein [R... 114 7e-24
gi|229494026|ref|ZP_04387795.1| single-strand binding protein [R... 112 2e-23
gi|262201962|ref|YP_003273170.1| single-strand-binding protein/P... 99.0 2e-19
gi|111018404|ref|YP_701376.1| single-strand DNA binding protein ... 98.6 3e-19
gi|226360524|ref|YP_002778302.1| single-stranded DNA-binding pro... 97.8 5e-19
gi|343927560|ref|ZP_08767030.1| putative single-stranded DNA-bin... 97.8 5e-19
gi|333918730|ref|YP_004492311.1| Single-stranded DNA-binding pro... 97.4 7e-19
gi|319947997|ref|ZP_08022174.1| single-strand binding protein [D... 93.2 1e-17
gi|117929339|ref|YP_873890.1| single-strand binding protein [Aci... 82.0 3e-14
gi|213965854|ref|ZP_03394045.1| single-strand binding protein [C... 82.0 3e-14
gi|117928827|ref|YP_873378.1| single-strand binding protein [Aci... 80.9 6e-14
gi|315504101|ref|YP_004082988.1| single-strand binding protein [... 80.5 8e-14
gi|331698568|ref|YP_004334807.1| single-strand binding protein [... 80.1 1e-13
gi|145596068|ref|YP_001160365.1| single-strand binding protein [... 79.3 2e-13
gi|330469711|ref|YP_004407454.1| single-strand binding protein [... 78.6 3e-13
gi|159039459|ref|YP_001538712.1| single-strand binding protein [... 77.4 6e-13
gi|172041070|ref|YP_001800784.1| hypothetical protein cur_1390 [... 76.6 1e-12
gi|238060675|ref|ZP_04605384.1| single-strand binding protein [M... 76.3 2e-12
gi|345014985|ref|YP_004817339.1| single-strand binding protein [... 75.9 2e-12
gi|260578325|ref|ZP_05846241.1| single-stranded DNA-binding prot... 75.5 2e-12
gi|290959261|ref|YP_003490443.1| single-strand binding protein [... 75.5 3e-12
gi|134097909|ref|YP_001103570.1| single-strand binding protein [... 75.1 3e-12
gi|38234375|ref|NP_940142.1| putative single-strand binding prot... 75.1 3e-12
gi|68535605|ref|YP_250310.1| hypothetical protein jk0533 [Coryne... 75.1 4e-12
gi|334565028|ref|ZP_08518019.1| hypothetical protein CbovD2_1068... 74.3 6e-12
gi|145295982|ref|YP_001138803.1| hypothetical protein cgR_1906 [... 73.9 7e-12
gi|302535600|ref|ZP_07287942.1| single-stranded DNA-binding prot... 73.2 1e-11
gi|291302126|ref|YP_003513404.1| single-strand binding protein/P... 72.8 1e-11
>gi|15842004|ref|NP_337041.1| hypothetical protein MT2553 [Mycobacterium tuberculosis CDC1551]
gi|254365253|ref|ZP_04981299.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|289746260|ref|ZP_06505638.1| single-strand DNA binding protein [Mycobacterium tuberculosis
02_1987]
23 more sequence titles
Length=168
Score = 320 bits (820), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 161/161 (100%), Positives = 161/161 (100%), Gaps = 0/161 (0%)
Query 1 VVGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGAA 60
VVGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGAA
Sbjct 8 VVGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGAA 67
Query 61 LGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAYTGPSAGDL 120
LGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAYTGPSAGDL
Sbjct 68 LGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAYTGPSAGDL 127
Query 121 PAATGTGAAGAADAPASAADSVSDVVVDDAITGHNPLPISA 161
PAATGTGAAGAADAPASAADSVSDVVVDDAITGHNPLPISA
Sbjct 128 PAATGTGAAGAADAPASAADSVSDVVVDDAITGHNPLPISA 168
>gi|308232147|ref|ZP_07415084.2| hypothetical protein TMAG_03038 [Mycobacterium tuberculosis SUMu001]
gi|308379216|ref|ZP_07485519.2| hypothetical protein TMJG_00746 [Mycobacterium tuberculosis SUMu010]
gi|308380379|ref|ZP_07489733.2| hypothetical protein TMKG_00740 [Mycobacterium tuberculosis SUMu011]
gi|308214910|gb|EFO74309.1| hypothetical protein TMAG_03038 [Mycobacterium tuberculosis SUMu001]
gi|308357787|gb|EFP46638.1| hypothetical protein TMJG_00746 [Mycobacterium tuberculosis SUMu010]
gi|308361731|gb|EFP50582.1| hypothetical protein TMKG_00740 [Mycobacterium tuberculosis SUMu011]
Length=163
Score = 320 bits (819), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 161/161 (100%), Positives = 161/161 (100%), Gaps = 0/161 (0%)
Query 1 VVGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGAA 60
VVGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGAA
Sbjct 3 VVGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGAA 62
Query 61 LGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAYTGPSAGDL 120
LGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAYTGPSAGDL
Sbjct 63 LGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAYTGPSAGDL 122
Query 121 PAATGTGAAGAADAPASAADSVSDVVVDDAITGHNPLPISA 161
PAATGTGAAGAADAPASAADSVSDVVVDDAITGHNPLPISA
Sbjct 123 PAATGTGAAGAADAPASAADSVSDVVVDDAITGHNPLPISA 163
>gi|148823677|ref|YP_001288431.1| hypothetical protein TBFG_12502 [Mycobacterium tuberculosis F11]
gi|253798443|ref|YP_003031444.1| hypothetical protein TBMG_01495 [Mycobacterium tuberculosis KZN
1435]
gi|289553731|ref|ZP_06442941.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
7 more sequence titles
Length=168
Score = 320 bits (819), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 161/161 (100%), Positives = 161/161 (100%), Gaps = 0/161 (0%)
Query 1 VVGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGAA 60
VVGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGAA
Sbjct 8 VVGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGAA 67
Query 61 LGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAYTGPSAGDL 120
LGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAYTGPSAGDL
Sbjct 68 LGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAYTGPSAGDL 127
Query 121 PAATGTGAAGAADAPASAADSVSDVVVDDAITGHNPLPISA 161
PAATGTGAAGAADAPASAADSVSDVVVDDAITGHNPLPISA
Sbjct 128 PAATGTGAAGAADAPASAADSVSDVVVDDAITGHNPLPISA 168
>gi|15609615|ref|NP_216994.1| hypothetical protein Rv2478c [Mycobacterium tuberculosis H37Rv]
gi|31793659|ref|NP_856152.1| hypothetical protein Mb2505c [Mycobacterium bovis AF2122/97]
gi|121638361|ref|YP_978585.1| hypothetical protein BCG_2498 [Mycobacterium bovis BCG str. Pasteur
1173P2]
32 more sequence titles
Length=161
Score = 318 bits (816), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 160/161 (99%), Positives = 161/161 (100%), Gaps = 0/161 (0%)
Query 1 VVGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGAA 60
+VGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGAA
Sbjct 1 MVGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGAA 60
Query 61 LGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAYTGPSAGDL 120
LGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAYTGPSAGDL
Sbjct 61 LGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAYTGPSAGDL 120
Query 121 PAATGTGAAGAADAPASAADSVSDVVVDDAITGHNPLPISA 161
PAATGTGAAGAADAPASAADSVSDVVVDDAITGHNPLPISA
Sbjct 121 PAATGTGAAGAADAPASAADSVSDVVVDDAITGHNPLPISA 161
>gi|340627492|ref|YP_004745944.1| hypothetical protein MCAN_25171 [Mycobacterium canettii CIPT
140010059]
gi|340005682|emb|CCC44848.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=161
Score = 317 bits (812), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 159/161 (99%), Positives = 160/161 (99%), Gaps = 0/161 (0%)
Query 1 VVGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGAA 60
+VGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGAA
Sbjct 1 MVGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGAA 60
Query 61 LGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAYTGPSAGDL 120
LGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRA SVGPDLSRVIVRIEKPAYTGPSAGDL
Sbjct 61 LGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRAMSVGPDLSRVIVRIEKPAYTGPSAGDL 120
Query 121 PAATGTGAAGAADAPASAADSVSDVVVDDAITGHNPLPISA 161
PAATGTGAAGAADAPASAADSVSDVVVDDAITGHNPLPISA
Sbjct 121 PAATGTGAAGAADAPASAADSVSDVVVDDAITGHNPLPISA 161
>gi|240171566|ref|ZP_04750225.1| hypothetical protein MkanA1_19786 [Mycobacterium kansasii ATCC
12478]
Length=171
Score = 251 bits (641), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 129/164 (79%), Positives = 136/164 (83%), Gaps = 3/164 (1%)
Query 1 VVGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGAA 60
VVGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLV+GVGAA
Sbjct 8 VVGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVSGVGAA 67
Query 61 LGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAYTGPSAGDL 120
LGKGAPVIVVGHVYTSEYEDRDG RRSSLEMRATSVGPDLSRV VRIEKP+YTGPS+ +
Sbjct 68 LGKGAPVIVVGHVYTSEYEDRDGNRRSSLEMRATSVGPDLSRVFVRIEKPSYTGPSSENA 127
Query 121 PAATGTGAAGAA---DAPASAADSVSDVVVDDAITGHNPLPISA 161
PAA TG +G D A+ DSV D H LP+SA
Sbjct 128 PAAGMTGQSGTVVNDDYLAARVDSVPDAAAAQNAADHTALPLSA 171
>gi|118619010|ref|YP_907342.1| hypothetical protein MUL_3758 [Mycobacterium ulcerans Agy99]
gi|118571120|gb|ABL05871.1| single-stranded DNA-binding protein [Mycobacterium ulcerans Agy99]
Length=165
Score = 225 bits (573), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/118 (93%), Positives = 113/118 (96%), Gaps = 0/118 (0%)
Query 1 VVGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGAA 60
+VGHIVND QRRKVGDQE +KFRVASNSRRRT+DGGWEPGNSLFITVNCWGRLVTGVGAA
Sbjct 1 MVGHIVNDPQRRKVGDQEFIKFRVASNSRRRTADGGWEPGNSLFITVNCWGRLVTGVGAA 60
Query 61 LGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAYTGPSAG 118
LGKGAPVIVVGHVYTSEYEDRDG RRSSLE+RATSVGPDLSRVIVRIEKP YTGPS G
Sbjct 61 LGKGAPVIVVGHVYTSEYEDRDGNRRSSLELRATSVGPDLSRVIVRIEKPGYTGPSPG 118
>gi|183983805|ref|YP_001852096.1| single-stranded DNA-binding protein [Mycobacterium marinum M]
gi|183177131|gb|ACC42241.1| single-stranded DNA-binding protein [Mycobacterium marinum M]
Length=172
Score = 224 bits (571), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 109/116 (94%), Positives = 112/116 (97%), Gaps = 0/116 (0%)
Query 1 VVGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGAA 60
VVGHIVND QRRKVGDQE +KFRVASNSRRRT+DGGWEPGNSLFITVNCWGRLVTGVGAA
Sbjct 8 VVGHIVNDPQRRKVGDQEFIKFRVASNSRRRTADGGWEPGNSLFITVNCWGRLVTGVGAA 67
Query 61 LGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAYTGPS 116
LGKGAPVIVVGHVYTSEYEDRDG RRSSLE+RATSVGPDLSRVIVRIEKP YTGPS
Sbjct 68 LGKGAPVIVVGHVYTSEYEDRDGNRRSSLELRATSVGPDLSRVIVRIEKPGYTGPS 123
>gi|254821445|ref|ZP_05226446.1| hypothetical protein MintA_16021 [Mycobacterium intracellulare
ATCC 13950]
Length=156
Score = 222 bits (566), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 115/161 (72%), Positives = 127/161 (79%), Gaps = 12/161 (7%)
Query 1 VVGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGAA 60
VVGHIVN+ +RR+VG QEV+KFRVASNSRRRT++GGWEPGNSLFI VNCWGRLVTGVGAA
Sbjct 8 VVGHIVNNPERRQVGTQEVMKFRVASNSRRRTAEGGWEPGNSLFINVNCWGRLVTGVGAA 67
Query 61 LGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAYTGPSAGDL 120
LGKGAPVIVVGHVYTSEYEDRDG RRSSLEMRATSVGPD+SR IVRIEKP YTGP+ D
Sbjct 68 LGKGAPVIVVGHVYTSEYEDRDGNRRSSLEMRATSVGPDVSRAIVRIEKPGYTGPTTADA 127
Query 121 PAATGTGAAGAADAPASAADSVSDVVVDDAITGHNPLPISA 161
AA+G AD+ D D G + LP+SA
Sbjct 128 TAASG------------PADADGDTTEADDGAGGDGLPLSA 156
>gi|118465023|ref|YP_880923.1| hypothetical protein MAV_1694 [Mycobacterium avium 104]
gi|254774513|ref|ZP_05216029.1| hypothetical protein MaviaA2_07558 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|118166310|gb|ABK67207.1| single-strand binding protein [Mycobacterium avium 104]
Length=160
Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 104/116 (90%), Positives = 110/116 (95%), Gaps = 0/116 (0%)
Query 1 VVGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGAA 60
VVGHIVN+ +RR+VG QEV+KFRVASNSRRRT+DGGWEPGNSLFI VNCWGRLVTGVGAA
Sbjct 8 VVGHIVNNPERRQVGAQEVIKFRVASNSRRRTADGGWEPGNSLFINVNCWGRLVTGVGAA 67
Query 61 LGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAYTGPS 116
LGKGAPVIVVGHVYTSEYEDRDG RRSSLEMRATSVGPD+SR IVRIEKP YTGPS
Sbjct 68 LGKGAPVIVVGHVYTSEYEDRDGNRRSSLEMRATSVGPDVSRAIVRIEKPGYTGPS 123
>gi|41408394|ref|NP_961230.1| hypothetical protein MAP2296c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41396750|gb|AAS04613.1| hypothetical protein MAP_2296c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336458267|gb|EGO37247.1| single stranded DNA-binding protein [Mycobacterium avium subsp.
paratuberculosis S397]
Length=160
Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 104/116 (90%), Positives = 110/116 (95%), Gaps = 0/116 (0%)
Query 1 VVGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGAA 60
VVGHIVN+ +RR+VG QEV+KFRVASNSRRRT+DGGWEPGNSLFI VNCWGRLVTGVGAA
Sbjct 8 VVGHIVNNPERRQVGAQEVIKFRVASNSRRRTADGGWEPGNSLFINVNCWGRLVTGVGAA 67
Query 61 LGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAYTGPS 116
LGKGAPVIVVGHVYTSEYEDRDG RRSSLEMRATSVGPD+SR IVRIEKP YTGPS
Sbjct 68 LGKGAPVIVVGHVYTSEYEDRDGNRRSSLEMRATSVGPDVSRAIVRIEKPGYTGPS 123
>gi|342857874|ref|ZP_08714530.1| hypothetical protein MCOL_03330 [Mycobacterium colombiense CECT
3035]
gi|342135207|gb|EGT88373.1| hypothetical protein MCOL_03330 [Mycobacterium colombiense CECT
3035]
Length=159
Score = 209 bits (532), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 100/114 (88%), Positives = 108/114 (95%), Gaps = 0/114 (0%)
Query 1 VVGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGAA 60
VVGHIVN+ +RR+VG QEV+KFRVASNSRRRT+DGGWEPGNSLFI VNCWG+LVTGVGAA
Sbjct 8 VVGHIVNNPERRQVGTQEVIKFRVASNSRRRTADGGWEPGNSLFINVNCWGKLVTGVGAA 67
Query 61 LGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAYTG 114
LGKGAPVIVVGHVYTSEYEDRDG RRSSLEMRATSVGPD+SR IVRIE+P YTG
Sbjct 68 LGKGAPVIVVGHVYTSEYEDRDGNRRSSLEMRATSVGPDVSRAIVRIERPGYTG 121
>gi|296170453|ref|ZP_06852041.1| single-stranded DNA-binding protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295894924|gb|EFG74645.1| single-stranded DNA-binding protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=159
Score = 209 bits (531), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 112/161 (70%), Positives = 123/161 (77%), Gaps = 9/161 (5%)
Query 1 VVGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGAA 60
VVGHIVN+ +RR+VG QEV+KFRVASNSRRRT+DGGWEPGNSLFI VNCWG+LVTGVGAA
Sbjct 8 VVGHIVNNPERRQVGTQEVIKFRVASNSRRRTADGGWEPGNSLFINVNCWGKLVTGVGAA 67
Query 61 LGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAYTGPSAGDL 120
L KGAPVIVVGHVYTSEYEDRDG RRSSLEMRATSVGPD+SR IVRIEKP YTGP+
Sbjct 68 LRKGAPVIVVGHVYTSEYEDRDGNRRSSLEMRATSVGPDVSRAIVRIEKPGYTGPATEAA 127
Query 121 PAATGTGAAGAADAPASAADSVSDVVVDDAITGHNPLPISA 161
AT DA A + +D PLP+SA
Sbjct 128 APATDPTDTAGEDADARDSAEAADT---------GPLPLSA 159
>gi|108800582|ref|YP_640779.1| hypothetical protein Mmcs_3616 [Mycobacterium sp. MCS]
gi|119869721|ref|YP_939673.1| hypothetical protein Mkms_3689 [Mycobacterium sp. KMS]
gi|126436198|ref|YP_001071889.1| hypothetical protein Mjls_3621 [Mycobacterium sp. JLS]
gi|108771001|gb|ABG09723.1| single-strand binding protein [Mycobacterium sp. MCS]
gi|119695810|gb|ABL92883.1| single-strand binding protein [Mycobacterium sp. KMS]
gi|126235998|gb|ABN99398.1| single-strand binding protein [Mycobacterium sp. JLS]
Length=168
Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 99/164 (61%), Positives = 125/164 (77%), Gaps = 6/164 (3%)
Query 1 VVGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGAA 60
VVG+IVN+ R++VGDQEV++FRVASNSRRRT+DG WEPGNSLF++V+CWG+LVTGVGA+
Sbjct 8 VVGNIVNNPYRQRVGDQEVMRFRVASNSRRRTADGSWEPGNSLFVSVSCWGKLVTGVGAS 67
Query 61 LGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAYTGPS-AGD 119
LGKG VIVVGHV+TSEY+DR+G+RRSS+E+RAT+VGPDLSR + R+E +GP+ AG+
Sbjct 68 LGKGDAVIVVGHVHTSEYDDREGVRRSSVEVRATAVGPDLSRCVARVETLRQSGPAGAGE 127
Query 120 LPAATGTGA--AGAADAPASAADSVSDVVVDDAITGHNPLPISA 161
P A TG A ADA A + DA LP+SA
Sbjct 128 APEAPETGGEVADGADAEAGHTGPGTGPGDPDAAEA---LPLSA 168
>gi|120405026|ref|YP_954855.1| hypothetical protein Mvan_4072 [Mycobacterium vanbaalenii PYR-1]
gi|119957844|gb|ABM14849.1| single-strand binding protein [Mycobacterium vanbaalenii PYR-1]
Length=162
Score = 183 bits (465), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 101/161 (63%), Positives = 114/161 (71%), Gaps = 6/161 (3%)
Query 1 VVGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGAA 60
VVG IV RR VGDQE+ KFRVASNSRRRT+DG WEPGNSL+ TVNCWGRLVTGVGA
Sbjct 8 VVGTIVTQPDRRWVGDQELFKFRVASNSRRRTADGTWEPGNSLYATVNCWGRLVTGVGAG 67
Query 61 LGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAYTGPSAGDL 120
LGKG PVIVVG++YTSEYEDRDG RRSSLE+RATSVGPDL+R I+RIE Y P +
Sbjct 68 LGKGDPVIVVGYLYTSEYEDRDGNRRSSLEIRATSVGPDLARCIIRIESRRYPEP----V 123
Query 121 PAATGTGAAGAADAPASAADSVSDVVVDDAITGHNPLPISA 161
PAA A AD+ V D + +G L +SA
Sbjct 124 PAAVAV--ASEADSVDDGDVVGDVVDEDASGSGAEELSLSA 162
>gi|145223154|ref|YP_001133832.1| hypothetical protein Mflv_2567 [Mycobacterium gilvum PYR-GCK]
gi|315443611|ref|YP_004076490.1| single stranded DNA-binding protein [Mycobacterium sp. Spyr1]
gi|145215640|gb|ABP45044.1| single-strand binding protein [Mycobacterium gilvum PYR-GCK]
gi|315261914|gb|ADT98655.1| single stranded DNA-binding protein [Mycobacterium sp. Spyr1]
Length=162
Score = 177 bits (448), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 92/147 (63%), Positives = 110/147 (75%), Gaps = 7/147 (4%)
Query 1 VVGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGAA 60
+VG+I+ RR VGDQE++KFRVASNSRRRT++G WEPGNSL+ TVNCWG L+TGVGA
Sbjct 8 IVGNIITAPDRRWVGDQELIKFRVASNSRRRTAEGTWEPGNSLYATVNCWGNLITGVGAG 67
Query 61 LGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIE-----KPAYTGP 115
LGKG PVIVVG+VYT+EYEDRDG RRSSLE+RATSVGPDL+R IVR+E +PA T P
Sbjct 68 LGKGDPVIVVGNVYTNEYEDRDGNRRSSLEIRATSVGPDLARCIVRMESRRHSRPAVTEP 127
Query 116 --SAGDLPAATGTGAAGAADAPASAAD 140
A A A A + P++ D
Sbjct 128 RDEADGRDTADAEDAEDAVETPSAERD 154
>gi|169628649|ref|YP_001702298.1| hypothetical protein MAB_1559 [Mycobacterium abscessus ATCC 19977]
gi|169240616|emb|CAM61644.1| Probable single-strand DNA binding protein [Mycobacterium abscessus]
Length=160
Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/114 (71%), Positives = 92/114 (81%), Gaps = 0/114 (0%)
Query 1 VVGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGAA 60
V+G IV DL+RR+VG E++KFRVASN+RRR DG W NSLFI V CWGRLVTGVGAA
Sbjct 8 VIGSIVGDLKRRQVGSDEMIKFRVASNARRRREDGSWVNSNSLFINVTCWGRLVTGVGAA 67
Query 61 LGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAYTG 114
LGKGAPVIV GH++TSE+ED+DG RR EM+A +VGPDLSR I RIEK YTG
Sbjct 68 LGKGAPVIVHGHLHTSEFEDKDGNRRQVTEMKAIAVGPDLSRTIARIEKVGYTG 121
>gi|333990070|ref|YP_004522684.1| single-stranded DNA-binding protein [Mycobacterium sp. JDM601]
gi|333486038|gb|AEF35430.1| single-stranded DNA-binding protein [Mycobacterium sp. JDM601]
Length=154
Score = 164 bits (414), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 74/109 (68%), Positives = 95/109 (88%), Gaps = 0/109 (0%)
Query 1 VVGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGAA 60
++G++V D RR+VG+ E++KFRVASNSR+RT+DG WEPGNSLF+TV CW RLVTGVGA+
Sbjct 8 IIGNVVTDPIRRRVGEHELIKFRVASNSRKRTADGNWEPGNSLFMTVTCWDRLVTGVGAS 67
Query 61 LGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEK 109
L KG PVIVVG V+TSEY+D+DG RRSS+E+RAT+VGP+L+R R+EK
Sbjct 68 LSKGLPVIVVGDVFTSEYDDKDGNRRSSVELRATAVGPNLARCAARVEK 116
>gi|118468704|ref|YP_888962.1| hypothetical protein MSMEG_4701 [Mycobacterium smegmatis str.
MC2 155]
gi|118169991|gb|ABK70887.1| single-strand binding protein [Mycobacterium smegmatis str. MC2
155]
Length=170
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/109 (68%), Positives = 93/109 (86%), Gaps = 0/109 (0%)
Query 1 VVGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGAA 60
VVG+I+ + R + GDQE+ KFRVASNSRRR+ +G WEPGNSL++TVNCWG L GV A+
Sbjct 10 VVGNIITNPVRLRFGDQELYKFRVASNSRRRSPEGTWEPGNSLYVTVNCWGNLARGVSAS 69
Query 61 LGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEK 109
LGKG V+VVGH+YT+EYEDR+G+RRSS+E+RAT+VGPDLSR I R+EK
Sbjct 70 LGKGDSVVVVGHLYTNEYEDREGVRRSSVEVRATAVGPDLSRCIARVEK 118
>gi|289751084|ref|ZP_06510462.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289691671|gb|EFD59100.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=94
Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/78 (100%), Positives = 78/78 (100%), Gaps = 0/78 (0%)
Query 84 IRRSSLEMRATSVGPDLSRVIVRIEKPAYTGPSAGDLPAATGTGAAGAADAPASAADSVS 143
IRRSSLEMRATSVGPDLSRVIVRIEKPAYTGPSAGDLPAATGTGAAGAADAPASAADSVS
Sbjct 17 IRRSSLEMRATSVGPDLSRVIVRIEKPAYTGPSAGDLPAATGTGAAGAADAPASAADSVS 76
Query 144 DVVVDDAITGHNPLPISA 161
DVVVDDAITGHNPLPISA
Sbjct 77 DVVVDDAITGHNPLPISA 94
>gi|312140392|ref|YP_004007728.1| single-strand binding protein [Rhodococcus equi 103S]
gi|311889731|emb|CBH49048.1| putative single-strand binding protein [Rhodococcus equi 103S]
Length=159
Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/121 (50%), Positives = 82/121 (68%), Gaps = 2/121 (1%)
Query 1 VVGHIVND-LQRRKVGDQEVVKFRVASNSRRRTSDGG-WEPGNSLFITVNCWGRLVTGVG 58
VVG ++ D ++R +EV+ FR+ASN RRR + G W G +L++TV+CW RLV GVG
Sbjct 10 VVGTVITDPIKRETTSGEEVMSFRMASNVRRRDRESGEWVDGGTLYLTVSCWRRLVQGVG 69
Query 59 AALGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAYTGPSAG 118
A+L KG P+I G + T+EY+ RDG RS LEMRAT+VGPDL+R R+++ T A
Sbjct 70 ASLMKGDPIIAHGELRTNEYKTRDGEPRSDLEMRATAVGPDLARCSARLDRSGRTRGGAT 129
Query 119 D 119
D
Sbjct 130 D 130
>gi|226307324|ref|YP_002767284.1| single-stranded DNA-binding protein [Rhodococcus erythropolis
PR4]
gi|226186441|dbj|BAH34545.1| putative single-stranded DNA-binding protein [Rhodococcus erythropolis
PR4]
Length=137
Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/113 (49%), Positives = 84/113 (75%), Gaps = 2/113 (1%)
Query 1 VVGHIV-NDLQRRKVGDQEVVKFRVASNSRRRTS-DGGWEPGNSLFITVNCWGRLVTGVG 58
VVG ++ N ++R+ +EV+ FR+ASN+RR+ + G W G +L++TV+CW RLVTGVG
Sbjct 8 VVGTVITNPVKRQTTSGEEVLSFRMASNTRRKDAVTGEWTDGATLYLTVSCWRRLVTGVG 67
Query 59 AALGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPA 111
A++ KG PV+V G + T+EY ++G+ RS LE+RAT+VG DL+R I +IE+ +
Sbjct 68 ASIMKGDPVMVAGELRTNEYTTKEGVPRSDLELRATAVGADLARCISKIERQS 120
>gi|325675998|ref|ZP_08155681.1| single-strand binding protein [Rhodococcus equi ATCC 33707]
gi|325553236|gb|EGD22915.1| single-strand binding protein [Rhodococcus equi ATCC 33707]
Length=159
Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/121 (50%), Positives = 82/121 (68%), Gaps = 2/121 (1%)
Query 1 VVGHIVND-LQRRKVGDQEVVKFRVASNSRRRTSDGG-WEPGNSLFITVNCWGRLVTGVG 58
VVG ++ D ++R +EV+ FR+ASN RRR + G W G +L++TV+CW RLV GVG
Sbjct 10 VVGTVITDPIKRETTSGEEVMSFRMASNVRRRDRESGEWVDGGTLYLTVSCWRRLVQGVG 69
Query 59 AALGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAYTGPSAG 118
A+L KG P+I G + T+EY+ RDG RS LEMRAT+VGPDL+R R+++ T A
Sbjct 70 ASLMKGDPIIAHGALRTNEYKTRDGEPRSDLEMRATAVGPDLARCSARLDRSGRTRGGAT 129
Query 119 D 119
D
Sbjct 130 D 130
>gi|229494026|ref|ZP_04387795.1| single-strand binding protein [Rhodococcus erythropolis SK121]
gi|229319095|gb|EEN84947.1| single-strand binding protein [Rhodococcus erythropolis SK121]
Length=137
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/113 (48%), Positives = 83/113 (74%), Gaps = 2/113 (1%)
Query 1 VVGHIV-NDLQRRKVGDQEVVKFRVASNSRRRTS-DGGWEPGNSLFITVNCWGRLVTGVG 58
VVG ++ N ++R+ +EV+ FR+ASN+RR+ + G W G +L++TV+CW RLVTGVG
Sbjct 8 VVGTVITNPVKRQTTNGEEVLSFRMASNTRRKDAVTGEWTDGATLYLTVSCWRRLVTGVG 67
Query 59 AALGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPA 111
A++ KG PV+V G + T+EY ++G+ RS LE+RA +VG DL+R I +IE+ +
Sbjct 68 ASIMKGDPVMVAGELRTNEYTTKEGVPRSDLELRAIAVGADLARCISKIERQS 120
>gi|262201962|ref|YP_003273170.1| single-strand-binding protein/Primosomal replication protein
n [Gordonia bronchialis DSM 43247]
gi|262085309|gb|ACY21277.1| single-strand binding protein/Primosomal replication protein
n [Gordonia bronchialis DSM 43247]
Length=151
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/117 (48%), Positives = 76/117 (65%), Gaps = 7/117 (5%)
Query 1 VVGHIVNDLQRRKVGD-QEVVKFRVASNSRR---RTSDGGWEPGNSLFITVNCWGRLVTG 56
++G +V++ +RR+ ++V+ FRVA NSRR RT G W G +L++TV+CW RL+ G
Sbjct 8 IIGTVVSEPKRRQTSTGEDVISFRVACNSRRIDKRT--GEWTDGPALYLTVSCWRRLLVG 65
Query 57 VGAALGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIE-KPAY 112
V A+ KG P+I G + T+EY DG RR+ LEM A SVG DLSR +V PAY
Sbjct 66 VAEAIAKGRPIIAHGQIKTNEYPMPDGSRRNDLEMTAVSVGLDLSRCVVTYRGNPAY 122
>gi|111018404|ref|YP_701376.1| single-strand DNA binding protein [Rhodococcus jostii RHA1]
gi|110817934|gb|ABG93218.1| single-strand DNA binding protein [Rhodococcus jostii RHA1]
Length=142
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/124 (43%), Positives = 74/124 (60%), Gaps = 2/124 (1%)
Query 1 VVGHIVND-LQRRKVGDQEVVKFRVASNSRRRT-SDGGWEPGNSLFITVNCWGRLVTGVG 58
VVG ++ + R E + FR+AS RRR + G W G++L++TV C RL+ GV
Sbjct 8 VVGTVITSPVTRSNAAGDEFLNFRMASTVRRRDHATGEWRDGSTLYLTVTCRRRLMAGVV 67
Query 59 AALGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAYTGPSAG 118
++ KG PVIV G + T+EY RDGI RS LE+ AT++GPDL+R V +E+ T
Sbjct 68 QSIAKGDPVIVTGELRTTEYTTRDGIARSDLELSATAIGPDLARCTVVLERAPRTADGGA 127
Query 119 DLPA 122
PA
Sbjct 128 ATPA 131
>gi|226360524|ref|YP_002778302.1| single-stranded DNA-binding protein [Rhodococcus opacus B4]
gi|226239009|dbj|BAH49357.1| single-stranded DNA-binding protein [Rhodococcus opacus B4]
Length=142
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/124 (44%), Positives = 76/124 (62%), Gaps = 2/124 (1%)
Query 1 VVGHIVND-LQRRKVGDQEVVKFRVASNSRRRT-SDGGWEPGNSLFITVNCWGRLVTGVG 58
VVG ++ + R E + FR+AS RRR + G W G++L++TV C RL+ GV
Sbjct 8 VVGTVITSPVIRSNAAGDEFLSFRMASTVRRRDHATGEWRDGSTLYLTVTCRRRLMAGVV 67
Query 59 AALGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAYTGPSAG 118
A++ KG PV+V G + T+EY RDGI RS LE+ AT++GPDL+R V +E+ T
Sbjct 68 ASITKGDPVLVTGDLRTTEYTTRDGIARSDLELSATAIGPDLARCTVVLERAPRTVDGGA 127
Query 119 DLPA 122
D PA
Sbjct 128 DDPA 131
>gi|343927560|ref|ZP_08767030.1| putative single-stranded DNA-binding protein [Gordonia alkanivorans
NBRC 16433]
gi|343762548|dbj|GAA13956.1| putative single-stranded DNA-binding protein [Gordonia alkanivorans
NBRC 16433]
Length=144
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/107 (49%), Positives = 71/107 (67%), Gaps = 2/107 (1%)
Query 1 VVGHIVNDLQRRKVGD-QEVVKFRVASNSRR-RTSDGGWEPGNSLFITVNCWGRLVTGVG 58
V+G +V++ +RR+ ++V+ FRVA SRR G W G +L++TV+CW RL+ GVG
Sbjct 8 VIGTVVSEPRRRQTTTGEDVISFRVACTSRRIDKRSGEWVDGPTLYLTVSCWRRLLAGVG 67
Query 59 AALGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIV 105
A+ KG PV+ G + T+EY DG RRS LEM A +VG DLSR IV
Sbjct 68 LAIAKGRPVMAHGQIKTNEYPTADGSRRSDLEMTAVAVGLDLSRCIV 114
>gi|333918730|ref|YP_004492311.1| Single-stranded DNA-binding protein [Amycolicicoccus subflavus
DQS3-9A1]
gi|333480951|gb|AEF39511.1| Single-stranded DNA-binding protein [Amycolicicoccus subflavus
DQS3-9A1]
Length=170
Score = 97.4 bits (241), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/114 (46%), Positives = 76/114 (67%), Gaps = 3/114 (2%)
Query 1 VVGHIVNDLQRRKVGDQ--EVVKFRVASNSR-RRTSDGGWEPGNSLFITVNCWGRLVTGV 57
+VG++ +++ RR VG + EVV F VAS +R S+ W+ G +LF+ V+CW R V
Sbjct 8 IVGNVASNMNRRLVGTRGDEVVSFTVASTTRVFDRSNAEWKDGTTLFVRVSCWNRASHRV 67
Query 58 GAALGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPA 111
A+L KG PVIV G ++T Y D +G +R SLEMRA +VGPD++R I +I++ A
Sbjct 68 IASLMKGDPVIVHGDLHTHTYTDNEGQQRMSLEMRARAVGPDVTRCIAQIDRRA 121
>gi|319947997|ref|ZP_08022174.1| single-strand binding protein [Dietzia cinnamea P4]
gi|319438343|gb|EFV93286.1| single-strand binding protein [Dietzia cinnamea P4]
Length=150
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/114 (48%), Positives = 72/114 (64%), Gaps = 6/114 (5%)
Query 1 VVGHIVNDLQRRKVGDQEVVKFRVASNSRR--RTSDGGWEPGNSLFITVNCWGRLVTGVG 58
V G ++ + R+VGD +V FRVASN+R RTS G W+ G +L+ + NCWGRL
Sbjct 8 VRGTVITNPTTRRVGDDQVFSFRVASNTRYQDRTS-GEWKTGGTLYFSANCWGRLAQRAS 66
Query 59 AALGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSR--VIVRIEKP 110
++ KG VIV G + T+EYE R+G LEMR +++GPDLSR V VR KP
Sbjct 67 GSICKGDGVIVHGRLLTNEYE-REGHLMRDLEMRVSALGPDLSRMDVTVRRAKP 119
>gi|117929339|ref|YP_873890.1| single-strand binding protein [Acidothermus cellulolyticus 11B]
gi|117649802|gb|ABK53904.1| single-strand binding protein [Acidothermus cellulolyticus 11B]
Length=153
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/136 (39%), Positives = 74/136 (55%), Gaps = 6/136 (4%)
Query 1 VVGHIVNDLQRRKV-GDQEVVKFRVASNSR---RRTSDGGWEPGNSLFITVNCWGRLVTG 56
+VG++V+D + R Q V KFRVAS R R+T++ W+ G SLF+T N W +
Sbjct 10 LVGNLVDDPELRFTPSGQAVAKFRVASTPRYLDRQTNE--WKDGESLFLTCNVWRQTAEN 67
Query 57 VGAALGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAYTGPS 116
V +L +G VIV G + YE +DG RR+ E+ VGP L ++ K + +G
Sbjct 68 VAESLSRGMRVIVQGRLKQRSYETKDGERRTVFEVDVDDVGPSLRNASAKVTKASRSGGP 127
Query 117 AGDLPAATGTGAAGAA 132
AG P A AAG+A
Sbjct 128 AGLAPVAEDPWAAGSA 143
>gi|213965854|ref|ZP_03394045.1| single-strand binding protein [Corynebacterium amycolatum SK46]
gi|213951432|gb|EEB62823.1| single-strand binding protein [Corynebacterium amycolatum SK46]
Length=186
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/148 (36%), Positives = 76/148 (52%), Gaps = 15/148 (10%)
Query 1 VVGHIVNDLQRRKVGD-QEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGA 59
VVG++V+ ++ R +V KF VAS S+ + GWE + + V CWG+L V
Sbjct 8 VVGNVVHHVENRNTNSGAKVCKFSVAS-SKSWKGENGWEQSETSYFDVECWGKLAENVNN 66
Query 60 ALGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRI----EKPAYTGP 115
+ KG VIV GHV T +E DG + ++ A +VGP+L R + + EKP T
Sbjct 67 TVWKGQAVIVHGHVRTDRWEGDDGTKHQRQKIIAKAVGPNLRRHLATVKTMTEKPHET-- 124
Query 116 SAGDLPAATGTGAAGAADAPASAADSVS 143
TG G A A D+ AS ++V+
Sbjct 125 -------PTGLGEASAGDSEASVTETVA 145
>gi|117928827|ref|YP_873378.1| single-strand binding protein [Acidothermus cellulolyticus 11B]
gi|117649290|gb|ABK53392.1| single-strand binding protein [Acidothermus cellulolyticus 11B]
Length=179
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/126 (39%), Positives = 72/126 (58%), Gaps = 8/126 (6%)
Query 1 VVGHIVNDLQRRKVGD-QEVVKFRVASNSRR--RTSDGGWEPGNSLFITVNCWGRLVTGV 57
++G++V D + D V FR+A+ RR RT+ G W G +LF +V CW L V
Sbjct 8 ILGNVVADPRLNFTADGHAVASFRLAATPRRFDRTA-GQWRDGETLFASVTCWRGLAENV 66
Query 58 GAALGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAYTG--- 114
A+L +G VIV+G + T Y+ +DG RR +E+ A +VGPDLSR + +++ G
Sbjct 67 AASLKRGQSVIVIGRLATRWYDAKDGSRREGVEIDALAVGPDLSRAVAVVKRAERAGVAH 126
Query 115 -PSAGD 119
PS G+
Sbjct 127 WPSPGN 132
>gi|315504101|ref|YP_004082988.1| single-strand binding protein [Micromonospora sp. L5]
gi|315410720|gb|ADU08837.1| single-strand binding protein [Micromonospora sp. L5]
Length=282
Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/110 (42%), Positives = 63/110 (58%), Gaps = 3/110 (2%)
Query 1 VVGHIVNDLQRRKVGDQ--EVVKFRVASNSRRRTSDGG-WEPGNSLFITVNCWGRLVTGV 57
+VG+++ + R+ V F+VAS +RR D G W GNSL + VNCW RL GV
Sbjct 8 IVGNVLTAPEWRRTTQSGTLVANFKVASTARRLDRDSGRWVDGNSLRVRVNCWRRLAEGV 67
Query 58 GAALGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRI 107
A++ G PVIV G +YT ++ D G R+ E+ A +VG DLSR R
Sbjct 68 AASVAVGDPVIVAGRLYTRDWTDEAGTHRTLYELEAVAVGHDLSRGRARF 117
>gi|331698568|ref|YP_004334807.1| single-strand binding protein [Pseudonocardia dioxanivorans CB1190]
gi|326953257|gb|AEA26954.1| single-strand binding protein [Pseudonocardia dioxanivorans CB1190]
Length=185
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/142 (39%), Positives = 75/142 (53%), Gaps = 12/142 (8%)
Query 1 VVGHIVNDLQRRKVGD-QEVVKFRVASNSRRRTSDGG-WEPGNSLFITVNCWGRLVTGVG 58
+VG++ + RR+ D E+ FR+ASN RR D G W + ++TV W +L V
Sbjct 8 IVGNVASAPMRRRTADGTELASFRLASNVRRFDRDAGEWVTITTSYVTVTAWRKLGLNVA 67
Query 59 AALGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAYTGPSAG 118
A+ KG PV+V G + T EY +DG R +E+ A ++GPDLSR V + A T P
Sbjct 68 ASFVKGDPVVVYGRLSTREYVAKDGGTRVDVEIDANAIGPDLSRCTVAV---ARTRP--- 121
Query 119 DLPAATGTGAAGAADAPASAAD 140
A G G A AP AAD
Sbjct 122 ----AQGEGLGETAGAPDEAAD 139
>gi|145596068|ref|YP_001160365.1| single-strand binding protein [Salinispora tropica CNB-440]
gi|145305405|gb|ABP55987.1| single-strand binding protein [Salinispora tropica CNB-440]
Length=230
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/133 (42%), Positives = 70/133 (53%), Gaps = 7/133 (5%)
Query 11 RRKVGDQEVV-KFRVASNSRRRTSDGG-WEPGNSLFITVNCWGRLVTGVGAALGKGAPVI 68
RR Q +V F+VAS +RR + G W GNSL + VNCW RL GV A++ G PVI
Sbjct 19 RRTTQSQTLVANFKVASTARRLDRESGRWVDGNSLRLRVNCWRRLAEGVAASVMVGDPVI 78
Query 69 VVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRI--EKPAYTGPSAGDL---PAA 123
V G +YT ++ D G R+ E+ A +VG DLSR R +PA T + D P
Sbjct 79 VSGRLYTRDWTDDAGSHRTHYELEAVAVGHDLSRGRGRFLRNRPATTTSNTADPTADPRV 138
Query 124 TGTGAAGAADAPA 136
G A APA
Sbjct 139 PGEQTESALSAPA 151
>gi|330469711|ref|YP_004407454.1| single-strand binding protein [Verrucosispora maris AB-18-032]
gi|328812682|gb|AEB46854.1| single-strand binding protein [Verrucosispora maris AB-18-032]
Length=280
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/105 (41%), Positives = 63/105 (60%), Gaps = 3/105 (2%)
Query 1 VVGHIVN--DLQRRKVGDQEVVKFRVASNSRRRTSDGG-WEPGNSLFITVNCWGRLVTGV 57
+VG+++ + +R + V F+VAS +RR D G W GNSL + VNCW +L GV
Sbjct 8 IVGNVLTAPEWRRTTQSNTLVANFKVASTARRLDRDSGRWVDGNSLRVRVNCWRKLAEGV 67
Query 58 GAALGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSR 102
A++ G PV+V G +YT ++ D G R+ E+ A +VG DLSR
Sbjct 68 AASVMVGDPVVVCGRLYTRDWTDEAGNHRTLYELEAVAVGHDLSR 112
>gi|159039459|ref|YP_001538712.1| single-strand binding protein [Salinispora arenicola CNS-205]
gi|157918294|gb|ABV99721.1| single-strand binding protein [Salinispora arenicola CNS-205]
Length=240
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/93 (48%), Positives = 56/93 (61%), Gaps = 2/93 (2%)
Query 11 RRKVGDQEVV-KFRVASNSRRRTSDGG-WEPGNSLFITVNCWGRLVTGVGAALGKGAPVI 68
RR Q +V FRVAS +RR D G W GNSL + VNCW RL GV A++ G PVI
Sbjct 19 RRTAQSQTLVANFRVASTARRLDRDSGRWVDGNSLRVRVNCWRRLAEGVAASVMVGDPVI 78
Query 69 VVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLS 101
V G ++T ++ D G R+ E+ A +VG DLS
Sbjct 79 VSGRLHTRDWTDETGNHRTHYELEAVAVGHDLS 111
>gi|172041070|ref|YP_001800784.1| hypothetical protein cur_1390 [Corynebacterium urealyticum DSM
7109]
gi|171852374|emb|CAQ05350.1| ssb2 [Corynebacterium urealyticum DSM 7109]
Length=217
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/114 (40%), Positives = 66/114 (58%), Gaps = 4/114 (3%)
Query 1 VVGHIV-NDLQRRKVGDQEVVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGA 59
+ G++V N + + D + FR+A N R + G W G+ F+TV CWG+L V +
Sbjct 58 LTGNMVSNPEMKHRTEDAAMAVFRMAVNHRYQDRHGQWVDGSPTFVTVQCWGKLAQNVVS 117
Query 60 ALGKGAPVIVVGHVYTSEYEDRD-GIRRSSLEMRATSVGPD--LSRVIVRIEKP 110
KG PV+VVG +Y S + +D G +RS+L +RA+ VG D L RV V E+P
Sbjct 118 DGYKGMPVVVVGRLYQSTWTAQDSGEKRSALRIRASHVGADMGLRRVTVTREEP 171
>gi|238060675|ref|ZP_04605384.1| single-strand binding protein [Micromonospora sp. ATCC 39149]
gi|237882486|gb|EEP71314.1| single-strand binding protein [Micromonospora sp. ATCC 39149]
Length=317
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/105 (42%), Positives = 63/105 (60%), Gaps = 3/105 (2%)
Query 1 VVGHIVNDLQRRKVGDQE--VVKFRVASNSRRRTSDGG-WEPGNSLFITVNCWGRLVTGV 57
+VG+++ + R+ V F+VAS +RR D G W GNSL + VNCW +L GV
Sbjct 8 IVGNVLTAPEWRRTTQSGTLVANFKVASTARRLDRDSGRWVDGNSLRVRVNCWRKLAEGV 67
Query 58 GAALGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSR 102
A++ G PV+VVG +YT ++ D G R+ E+ A +VG DLSR
Sbjct 68 AASVMVGDPVMVVGRLYTRDWTDDAGNHRTVYELEAVAVGHDLSR 112
>gi|345014985|ref|YP_004817339.1| single-strand binding protein [Streptomyces violaceusniger Tu
4113]
gi|344041334|gb|AEM87059.1| single-strand binding protein [Streptomyces violaceusniger Tu
4113]
Length=170
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/158 (35%), Positives = 74/158 (47%), Gaps = 17/158 (10%)
Query 1 VVGHIVNDLQRRKV-GDQEVVKFRVASNSRR-RTSDGGWEPGNSLFITVNCWGRLVTGVG 58
++G++V+D + R V KFRVAS R + WE G SLF+T + W + V
Sbjct 9 LIGNLVDDPELRFTPSGAAVAKFRVASTPRTFNKTTNAWEDGESLFLTCSVWRQAAEHVA 68
Query 59 AALGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAYTG---- 114
+L +G VIV G + YEDR+G++R+ E+ VGP L ++ K G
Sbjct 69 ESLARGMRVIVQGRLKQRSYEDREGVKRTVYELDVDEVGPSLRNATAKVTKATGNGSQQQ 128
Query 115 ----PSAGDLPAATGTGAAG-------AADAPASAADS 141
P AG PAA A G APAS DS
Sbjct 129 GQADPWAGAKPAAPNGQAQGGGWSTTQQQPAPASNGDS 166
>gi|260578325|ref|ZP_05846241.1| single-stranded DNA-binding protein [Corynebacterium jeikeium
ATCC 43734]
gi|258603627|gb|EEW16888.1| single-stranded DNA-binding protein [Corynebacterium jeikeium
ATCC 43734]
Length=175
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/97 (44%), Positives = 56/97 (58%), Gaps = 6/97 (6%)
Query 19 VVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGAALGKGAPVIVVGHVYTSEY 78
+ FRVA N R + +DG W+ G+ ++ V CWG L V A + KG VIVVG + S +
Sbjct 31 LTTFRVAMNHRYQGADGQWKDGDPCYMEVQCWGALGDNVSATVCKGMSVIVVGRIVQSTW 90
Query 79 ----EDRDGIRRSSLEMRATSVGPDLS--RVIVRIEK 109
ED + RS L +RAT VGPDLS V+V + K
Sbjct 91 EANGEDGKSVTRSVLRVRATHVGPDLSARNVLVNVRK 127
>gi|290959261|ref|YP_003490443.1| single-strand binding protein [Streptomyces scabiei 87.22]
gi|260648787|emb|CBG71900.1| putative single-strand binding protein [Streptomyces scabiei
87.22]
Length=174
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/113 (37%), Positives = 65/113 (58%), Gaps = 6/113 (5%)
Query 1 VVGHIVNDLQRRKV-GDQEVVKFRVASNSR---RRTSDGGWEPGNSLFITVNCWGRLVTG 56
VVG++V+D + R V KFR+AS R ++T++ W+ G+ LF+T + W +
Sbjct 9 VVGNLVDDPELRFTPAGAAVAKFRIASTPRVYDKQTNE--WKDGDPLFLTCSVWRQAAEN 66
Query 57 VGAALGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEK 109
V +L KG IV G + YEDR+G++R+ E+ VGP L+R ++EK
Sbjct 67 VAESLAKGTRAIVQGRLKQRSYEDREGVKRTVYELDVDEVGPTLARATAKVEK 119
>gi|134097909|ref|YP_001103570.1| single-strand binding protein [Saccharopolyspora erythraea NRRL
2338]
gi|291007373|ref|ZP_06565346.1| single-strand binding protein [Saccharopolyspora erythraea NRRL
2338]
gi|133910532|emb|CAM00645.1| single-strand binding protein [Saccharopolyspora erythraea NRRL
2338]
Length=232
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/114 (40%), Positives = 65/114 (58%), Gaps = 3/114 (2%)
Query 1 VVGHIVNDLQ-RRKVGDQEVVKFRVASNSRRRTSDGG-WEPGNSLFITVNCWGRLVTGVG 58
VVG+++ + + RR G V FRV S SRR D W G+ +F TVNCW RL GV
Sbjct 8 VVGYVITEPRLRRTPGGNRVTSFRVVSTSRRFDKDSEEWVNGDQVFATVNCWHRLADGVA 67
Query 59 AALGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPAY 112
+ K PV+V G + T +YE G RS++E+ A ++G DL+R + + P +
Sbjct 68 EEMRKSDPVVVTGRMRTRDYE-VGGQWRSAVEIDANAIGLDLARQRRKDDPPGF 120
>gi|38234375|ref|NP_940142.1| putative single-strand binding protein [Corynebacterium diphtheriae
NCTC 13129]
gi|38200638|emb|CAE50334.1| Putative single-strand binding protein [Corynebacterium diphtheriae]
Length=162
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/155 (33%), Positives = 73/155 (48%), Gaps = 20/155 (12%)
Query 1 VVGHIVNDLQRRKVGDQEVVKFRVASNSR----RRTSDG------GWEPGNSLFITVNCW 50
+VG++ + RK G V FR+A++ R +T+D W +SL+I V CW
Sbjct 7 IVGNLTGEPSLRKAGTSMVASFRIAASRRILRTNQTADSESRPEDKWVDADSLYIDVECW 66
Query 51 GRLVTGVGAALGKGAPVIVVGHVYTSEYEDRD-GIRRSSLEMRATSVGPDLSRVIVRIEK 109
G+L V L KG PVI G++ T + D+D G RS + +A SVG +LSR K
Sbjct 67 GQLAANVKTTLCKGRPVICTGYLITQSWVDKDSGASRSKIVFKANSVGLELSRYCASSRK 126
Query 110 ---------PAYTGPSAGDLPAATGTGAAGAADAP 135
P P AG P+ ++ A AP
Sbjct 127 SVENDVHEAPGLHAPVAGAEPSFDDETSSEEAVAP 161
>gi|68535605|ref|YP_250310.1| hypothetical protein jk0533 [Corynebacterium jeikeium K411]
gi|68263204|emb|CAI36692.1| ssb2 [Corynebacterium jeikeium K411]
Length=171
Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/97 (44%), Positives = 56/97 (58%), Gaps = 6/97 (6%)
Query 19 VVKFRVASNSRRRTSDGGWEPGNSLFITVNCWGRLVTGVGAALGKGAPVIVVGHVYTSEY 78
+ FRVA N R + +DG W+ G+ ++ V CWG L V A + KG VIVVG + S +
Sbjct 31 LTTFRVAMNHRYQGADGQWKDGDPCYMEVQCWGALGDNVSATVCKGMSVIVVGRIVQSTW 90
Query 79 ----EDRDGIRRSSLEMRATSVGPDLS--RVIVRIEK 109
ED + RS L +RAT VGPDLS V+V + K
Sbjct 91 EANGEDGQPVTRSVLRVRATHVGPDLSARNVLVNVRK 127
>gi|334565028|ref|ZP_08518019.1| hypothetical protein CbovD2_10684 [Corynebacterium bovis DSM
20582]
Length=211
Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/115 (39%), Positives = 72/115 (63%), Gaps = 8/115 (6%)
Query 1 VVGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSDGG-WEPGNSLFITVNCWGRLVTGVGA 59
+ G++V + +RRK G ++V FR+AS+ RR DG W+ G++++I V CWG+L V
Sbjct 10 LAGNVVGNPERRK-GTFDLVTFRMASD--RRWFDGTEWQQGDTVYIDVQCWGQLGRNVLT 66
Query 60 ALGKGAPVIVVGHVYTSEYEDR--DGI--RRSSLEMRATSVGPDLSRVIVRIEKP 110
++ KG IVVG + S +++ DG +R ++ ++AT GPDL+RV V +P
Sbjct 67 SVSKGMAFIVVGRLIMSRWQEELPDGTTRQRQAIRLKATHCGPDLNRVEVTAVRP 121
>gi|145295982|ref|YP_001138803.1| hypothetical protein cgR_1906 [Corynebacterium glutamicum R]
gi|57158140|dbj|BAD84109.1| putative single-strand binding protein [Corynebacterium glutamicum]
gi|140845902|dbj|BAF54901.1| hypothetical protein [Corynebacterium glutamicum R]
Length=175
Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/146 (35%), Positives = 71/146 (49%), Gaps = 8/146 (5%)
Query 1 VVGHIVNDLQRRKV-GDQEVVKFRVASNSR---RRTSDGGWEPGNSLFITVNCWGRLVTG 56
VVG++V D + R V FR+AS R R+T+ WE G +LF+TVN W +
Sbjct 10 VVGNMVADPELRFTPSGAAVCNFRMASTPRSFNRQTNQ--WEDGEALFLTVNVWRQAAEN 67
Query 57 VGAALGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEKPA--YTG 114
V +L KG VIV G + YE R+G +RS E+ A VGP L+ + + +G
Sbjct 68 VAESLSKGMRVIVTGRLKQRSYETREGEKRSVFEVEADEVGPSLTFAYANVHRQTGKQSG 127
Query 115 PSAGDLPAATGTGAAGAADAPASAAD 140
A PA + G A A+D
Sbjct 128 QQASQPPAQAANESRGGFGQAAPASD 153
>gi|302535600|ref|ZP_07287942.1| single-stranded DNA-binding protein 1 [Streptomyces sp. C]
gi|302444495|gb|EFL16311.1| single-stranded DNA-binding protein 1 [Streptomyces sp. C]
Length=195
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/113 (38%), Positives = 63/113 (56%), Gaps = 6/113 (5%)
Query 1 VVGHIVNDLQRRKV-GDQEVVKFRVASNSR---RRTSDGGWEPGNSLFITVNCWGRLVTG 56
VVG++V+D + R V KFRVAS R R+T++ W+ G SLF+T + W +
Sbjct 9 VVGNLVDDPELRFTPSGAAVAKFRVASTPRTFDRQTNE--WKDGESLFLTCSVWRQAAEN 66
Query 57 VGAALGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSRVIVRIEK 109
V +L +G VIV G + YEDR+G++R+ E+ VGP L ++ K
Sbjct 67 VAESLQRGMRVIVQGRLRQRSYEDREGVKRTVYELDVEEVGPSLKNATAKVAK 119
>gi|291302126|ref|YP_003513404.1| single-strand binding protein/Primosomal replication protein
n [Stackebrandtia nassauensis DSM 44728]
gi|290571346|gb|ADD44311.1| single-strand binding protein/Primosomal replication protein
n [Stackebrandtia nassauensis DSM 44728]
Length=118
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/103 (38%), Positives = 59/103 (58%), Gaps = 1/103 (0%)
Query 1 VVGHIVNDLQRRKVGDQEVVKFRVASNSRRRTSD-GGWEPGNSLFITVNCWGRLVTGVGA 59
VVG++ +R+ + F+VAS SRR + G W G+ LFI V CW L V
Sbjct 8 VVGNVCTKPIQRQFPTGSMTDFKVASTSRRFDKELGKWVDGDELFIRVACWRALAQHVYK 67
Query 60 ALGKGAPVIVVGHVYTSEYEDRDGIRRSSLEMRATSVGPDLSR 102
++ G PVI+ G +Y+ Y D+D + R++ E+ A ++G DLSR
Sbjct 68 SVRVGDPVIIRGRLYSRRYTDKDEVPRTAFEISAQAIGHDLSR 110
Lambda K H
0.315 0.133 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131112251088
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40