BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2481c Length=107 Score E Sequences producing significant alignments: (Bits) Value gi|15609618|ref|NP_216997.1| hypothetical protein Rv2481c [Mycob... 210 4e-53 gi|340627493|ref|YP_004745945.1| hypothetical protein MCAN_25181... 162 2e-38 gi|159162019|ref|YP_393335.2| formate dehydrogenase alpha subuni... 34.3 6.1 gi|23168747|gb|AAN08704.1| major surface protein 2 [Anaplasma ma... 33.5 9.7 >gi|15609618|ref|NP_216997.1| hypothetical protein Rv2481c [Mycobacterium tuberculosis H37Rv] gi|31793660|ref|NP_856153.1| hypothetical protein Mb2506c [Mycobacterium bovis AF2122/97] gi|121638362|ref|YP_978586.1| hypothetical protein BCG_2499c [Mycobacterium bovis BCG str. Pasteur 1173P2] 37 more sequence titlesLength=107 Score = 210 bits (535), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 106/107 (99%), Positives = 107/107 (100%), Gaps = 0/107 (0%) Query 1 VALRRRHEPDGWPFSQRSEKPNAVRHAVRCSAVSAAASTANGTPVNWVSGRVTRAMGVHR 60 +ALRRRHEPDGWPFSQRSEKPNAVRHAVRCSAVSAAASTANGTPVNWVSGRVTRAMGVHR Sbjct 1 MALRRRHEPDGWPFSQRSEKPNAVRHAVRCSAVSAAASTANGTPVNWVSGRVTRAMGVHR 60 Query 61 QTRGGVASVHADSLRGAVLVHGQLRNSIPISANVPASGANTKSSIAH 107 QTRGGVASVHADSLRGAVLVHGQLRNSIPISANVPASGANTKSSIAH Sbjct 61 QTRGGVASVHADSLRGAVLVHGQLRNSIPISANVPASGANTKSSIAH 107 >gi|340627493|ref|YP_004745945.1| hypothetical protein MCAN_25181 [Mycobacterium canettii CIPT 140010059] gi|340005683|emb|CCC44849.1| hypothetical protein MCAN_25181 [Mycobacterium canettii CIPT 140010059] Length=104 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 89/95 (94%), Positives = 91/95 (96%), Gaps = 0/95 (0%) Query 1 VALRRRHEPDGWPFSQRSEKPNAVRHAVRCSAVSAAASTANGTPVNWVSGRVTRAMGVHR 60 +ALRRRHEPDGWPFSQRSEKPNAVRHAVRCSAVSAAASTANGTPVNWVSGRVTRAMGVHR Sbjct 1 MALRRRHEPDGWPFSQRSEKPNAVRHAVRCSAVSAAASTANGTPVNWVSGRVTRAMGVHR 60 Query 61 QTRGGVASVHADSLRGAVLVHGQLRNSIPISANVP 95 QTRGGVASVHADSLRGAVLVHGQLRNSIP + P Sbjct 61 QTRGGVASVHADSLRGAVLVHGQLRNSIPSAPTSP 95 >gi|159162019|ref|YP_393335.2| formate dehydrogenase alpha subunit [Sulfurimonas denitrificans DSM 1251] gi|159895180|gb|ABB44099.2| formate dehydrogenase alpha subunit [Sulfurimonas denitrificans DSM 1251] Length=932 Score = 34.3 bits (77), Expect = 6.1, Method: Composition-based stats. Identities = 18/47 (39%), Positives = 25/47 (54%), Gaps = 0/47 (0%) Query 18 SEKPNAVRHAVRCSAVSAAASTANGTPVNWVSGRVTRAMGVHRQTRG 64 ++KPN R VR ++ A + P+N VSGRV MG +TR Sbjct 771 ADKPNHYRANVRYASEQNAKNWVADHPINIVSGRVVEHMGTGTETRA 817 >gi|23168747|gb|AAN08704.1| major surface protein 2 [Anaplasma marginale] Length=410 Score = 33.5 bits (75), Expect = 9.7, Method: Composition-based stats. Identities = 24/79 (31%), Positives = 40/79 (51%), Gaps = 1/79 (1%) Query 15 SQRSEKPNAVRHAVRCSAVSAAASTANGTPVNWVSGRVTRAMGVHRQTRGGVASVHADSL 74 S K +AV A A+S+ +T+NGT +N VSG T G+ ++ + VA A ++ Sbjct 223 STNGNKISAVFSAEGAEAISSMDTTSNGTTIN-VSGMATNINGLSKEEKAVVAGAFARAV 281 Query 75 RGAVLVHGQLRNSIPISAN 93 GA ++ + S + N Sbjct 282 EGAEVIEVRAIGSTSVMLN 300 Lambda K H 0.315 0.125 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 130484177216 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40