BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2481c

Length=107
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609618|ref|NP_216997.1|  hypothetical protein Rv2481c [Mycob...   210    4e-53
gi|340627493|ref|YP_004745945.1|  hypothetical protein MCAN_25181...   162    2e-38
gi|159162019|ref|YP_393335.2|  formate dehydrogenase alpha subuni...  34.3    6.1  
gi|23168747|gb|AAN08704.1|  major surface protein 2 [Anaplasma ma...  33.5    9.7  


>gi|15609618|ref|NP_216997.1| hypothetical protein Rv2481c [Mycobacterium tuberculosis H37Rv]
 gi|31793660|ref|NP_856153.1| hypothetical protein Mb2506c [Mycobacterium bovis AF2122/97]
 gi|121638362|ref|YP_978586.1| hypothetical protein BCG_2499c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 37 more sequence titles
 Length=107

 Score =  210 bits (535),  Expect = 4e-53, Method: Compositional matrix adjust.
 Identities = 106/107 (99%), Positives = 107/107 (100%), Gaps = 0/107 (0%)

Query  1    VALRRRHEPDGWPFSQRSEKPNAVRHAVRCSAVSAAASTANGTPVNWVSGRVTRAMGVHR  60
            +ALRRRHEPDGWPFSQRSEKPNAVRHAVRCSAVSAAASTANGTPVNWVSGRVTRAMGVHR
Sbjct  1    MALRRRHEPDGWPFSQRSEKPNAVRHAVRCSAVSAAASTANGTPVNWVSGRVTRAMGVHR  60

Query  61   QTRGGVASVHADSLRGAVLVHGQLRNSIPISANVPASGANTKSSIAH  107
            QTRGGVASVHADSLRGAVLVHGQLRNSIPISANVPASGANTKSSIAH
Sbjct  61   QTRGGVASVHADSLRGAVLVHGQLRNSIPISANVPASGANTKSSIAH  107


>gi|340627493|ref|YP_004745945.1| hypothetical protein MCAN_25181 [Mycobacterium canettii CIPT 
140010059]
 gi|340005683|emb|CCC44849.1| hypothetical protein MCAN_25181 [Mycobacterium canettii CIPT 
140010059]
Length=104

 Score =  162 bits (409),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 89/95 (94%), Positives = 91/95 (96%), Gaps = 0/95 (0%)

Query  1   VALRRRHEPDGWPFSQRSEKPNAVRHAVRCSAVSAAASTANGTPVNWVSGRVTRAMGVHR  60
           +ALRRRHEPDGWPFSQRSEKPNAVRHAVRCSAVSAAASTANGTPVNWVSGRVTRAMGVHR
Sbjct  1   MALRRRHEPDGWPFSQRSEKPNAVRHAVRCSAVSAAASTANGTPVNWVSGRVTRAMGVHR  60

Query  61  QTRGGVASVHADSLRGAVLVHGQLRNSIPISANVP  95
           QTRGGVASVHADSLRGAVLVHGQLRNSIP +   P
Sbjct  61  QTRGGVASVHADSLRGAVLVHGQLRNSIPSAPTSP  95


>gi|159162019|ref|YP_393335.2| formate dehydrogenase alpha subunit [Sulfurimonas denitrificans 
DSM 1251]
 gi|159895180|gb|ABB44099.2| formate dehydrogenase alpha subunit [Sulfurimonas denitrificans 
DSM 1251]
Length=932

 Score = 34.3 bits (77),  Expect = 6.1, Method: Composition-based stats.
 Identities = 18/47 (39%), Positives = 25/47 (54%), Gaps = 0/47 (0%)

Query  18   SEKPNAVRHAVRCSAVSAAASTANGTPVNWVSGRVTRAMGVHRQTRG  64
            ++KPN  R  VR ++   A +     P+N VSGRV   MG   +TR 
Sbjct  771  ADKPNHYRANVRYASEQNAKNWVADHPINIVSGRVVEHMGTGTETRA  817


>gi|23168747|gb|AAN08704.1| major surface protein 2 [Anaplasma marginale]
Length=410

 Score = 33.5 bits (75),  Expect = 9.7, Method: Composition-based stats.
 Identities = 24/79 (31%), Positives = 40/79 (51%), Gaps = 1/79 (1%)

Query  15   SQRSEKPNAVRHAVRCSAVSAAASTANGTPVNWVSGRVTRAMGVHRQTRGGVASVHADSL  74
            S    K +AV  A    A+S+  +T+NGT +N VSG  T   G+ ++ +  VA   A ++
Sbjct  223  STNGNKISAVFSAEGAEAISSMDTTSNGTTIN-VSGMATNINGLSKEEKAVVAGAFARAV  281

Query  75   RGAVLVHGQLRNSIPISAN  93
             GA ++  +   S  +  N
Sbjct  282  EGAEVIEVRAIGSTSVMLN  300



Lambda     K      H
   0.315    0.125    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 130484177216


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40