BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2493

Length=73
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609630|ref|NP_217009.1|  hypothetical protein Rv2493 [Mycoba...   137    6e-31
gi|340627507|ref|YP_004745959.1|  hypothetical protein MCAN_25321...   136    8e-31
gi|289448138|ref|ZP_06437882.1|  antitoxin [Mycobacterium tubercu...   136    1e-30
gi|15842065|ref|NP_337102.1|  hypothetical protein MT2606 [Mycoba...  68.6    3e-10
gi|289575235|ref|ZP_06455462.1|  antitoxin [Mycobacterium tubercu...  66.6    1e-09
gi|241518560|ref|YP_002979188.1|  hypothetical protein Rleg_5863 ...  60.8    6e-08
gi|304413693|ref|ZP_07395137.1|  hypothetical protein REG_0768 [C...  58.9    2e-07
gi|16264147|ref|NP_436939.1|  hypothetical protein SM_b20413 [Sin...  57.4    7e-07
gi|336038110|gb|AEH84040.1|  hypothetical protein SM11_pD1208 [Si...  57.4    7e-07
gi|344199816|ref|YP_004784142.1|  hypothetical protein Acife_1683...  52.8    2e-05
gi|113954589|ref|YP_729373.1|  hypothetical protein sync_0136 [Sy...  52.8    2e-05
gi|294339104|emb|CAZ87458.1|  putative transcriptional regulator ...  52.4    2e-05
gi|196230684|ref|ZP_03129545.1|  conserved hypothetical protein [...  52.4    3e-05
gi|340358884|ref|ZP_08681387.1|  hypothetical protein HMPREF9062_...  52.0    3e-05
gi|325069051|ref|ZP_08127724.1|  hypothetical protein AoriK_14579...  51.6    4e-05
gi|317967918|ref|ZP_07969308.1|  hypothetical protein SCB02_00122...  50.4    1e-04
gi|218458497|ref|ZP_03498588.1|  hypothetical protein RetlK5_0316...  49.7    1e-04
gi|225874393|ref|YP_002755852.1|  hypothetical protein ACP_2836 [...  48.5    3e-04
gi|134291478|ref|YP_001115247.1|  hypothetical protein Bcep1808_6...  48.5    4e-04
gi|56478773|ref|YP_160362.1|  hypothetical protein ebA5867 [Aroma...  47.8    6e-04
gi|206601847|gb|EDZ38330.1|  Hypothetical protein CGL2_11278039 [...  47.8    6e-04
gi|87123103|ref|ZP_01078954.1|  hypothetical protein RS9917_04570...  47.0    9e-04
gi|337267946|ref|YP_004612001.1|  hypothetical protein Mesop_3461...  45.8    0.002
gi|87123275|ref|ZP_01079126.1|  hypothetical protein RS9917_05430...  45.1    0.004
gi|114331351|ref|YP_747573.1|  hypothetical protein Neut_1360 [Ni...  45.1    0.004
gi|334319153|ref|YP_004551712.1|  hypothetical protein Sinme_6079...  41.6    0.042
gi|336035908|gb|AEH81839.1|  hypothetical protein SM11_pC0766 [Si...  41.6    0.045
gi|336179655|ref|YP_004585030.1|  hypothetical protein FsymDg_383...  40.8    0.068
gi|15610457|ref|NP_217838.1|  hypothetical protein Rv3321c [Mycob...  40.0    0.13 
gi|229822545|ref|YP_002884071.1|  CopG family DNA-binding protein...  38.1    0.39 
gi|33864608|ref|NP_896167.1|  hypothetical protein SYNW0072 [Syne...  37.4    0.84 
gi|336115787|ref|YP_004570553.1|  hypothetical protein MLP_01360 ...  37.0    0.95 
gi|115974863|ref|XP_001182524.1|  PREDICTED: similar to nephrin [...  36.6    1.2  
gi|330818819|ref|YP_004351036.1|  hypothetical protein bgla_3p011...  36.6    1.3  
gi|300780205|ref|ZP_07090061.1|  toxin-antitoxin system [Coryneba...  35.8    2.3  
gi|86738905|ref|YP_479305.1|  hypothetical protein Francci3_0184 ...  35.4    2.5  
gi|241948955|ref|XP_002417200.1|  nuclear pore protein NUP170, pu...  35.4    2.6  
gi|340627619|ref|YP_004746071.1|  hypothetical protein MCAN_26441...  34.7    4.8  
gi|15843316|ref|NP_338353.1|  CopG family DNA-binding protein [My...  34.7    4.8  
gi|306778586|ref|ZP_07416923.1|  antitoxin [Mycobacterium tubercu...  34.7    4.9  
gi|15827187|ref|NP_301450.1|  hypothetical protein ML0525 [Mycoba...  34.3    5.8  
gi|15840019|ref|NP_335056.1|  hypothetical protein MT0645.2 [Myco...  34.3    6.4  
gi|320109070|ref|YP_004184660.1|  hypothetical protein AciPR4_391...  34.3    6.6  
gi|15840686|ref|NP_335723.1|  hypothetical protein MT1279 [Mycoba...  33.9    7.4  
gi|88810688|ref|ZP_01125945.1|  hypothetical protein NB231_16448 ...  33.9    7.9  
gi|330808538|ref|YP_004353000.1|  hypothetical protein PSEBR_a178...  33.9    8.0  
gi|210631756|ref|ZP_03296998.1|  hypothetical protein COLSTE_0088...  33.9    8.0  
gi|254364141|ref|ZP_04980187.1|  conserved hypothetical protein [...  33.9    8.5  
gi|87123267|ref|ZP_01079118.1|  hypothetical protein RS9917_05390...  33.9    8.5  
gi|15608381|ref|NP_215757.1|  hypothetical protein Rv1241 [Mycoba...  33.9    9.1  


>gi|15609630|ref|NP_217009.1| hypothetical protein Rv2493 [Mycobacterium tuberculosis H37Rv]
 gi|15842021|ref|NP_337058.1| hypothetical protein MT2568 [Mycobacterium tuberculosis CDC1551]
 gi|31793673|ref|NP_856166.1| hypothetical protein Mb2521 [Mycobacterium bovis AF2122/97]
 65 more sequence titles
 Length=73

 Score =  137 bits (345),  Expect = 6e-31, Method: Compositional matrix adjust.
 Identities = 72/73 (99%), Positives = 73/73 (100%), Gaps = 0/73 (0%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPVIRVPAGTPP  60
           +RTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPVIRVPAGTPP
Sbjct  1   MRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPVIRVPAGTPP  60

Query  61  ITPEMVRRALDED  73
           ITPEMVRRALDED
Sbjct  61  ITPEMVRRALDED  73


>gi|340627507|ref|YP_004745959.1| hypothetical protein MCAN_25321 [Mycobacterium canettii CIPT 
140010059]
 gi|340005697|emb|CCC44863.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=73

 Score =  136 bits (343),  Expect = 8e-31, Method: Compositional matrix adjust.
 Identities = 71/73 (98%), Positives = 73/73 (100%), Gaps = 0/73 (0%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPVIRVPAGTPP  60
           +RTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGR+EADDGLPVIRVPAGTPP
Sbjct  1   MRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRIEADDGLPVIRVPAGTPP  60

Query  61  ITPEMVRRALDED  73
           ITPEMVRRALDED
Sbjct  61  ITPEMVRRALDED  73


>gi|289448138|ref|ZP_06437882.1| antitoxin [Mycobacterium tuberculosis CPHL_A]
 gi|289421096|gb|EFD18297.1| antitoxin [Mycobacterium tuberculosis CPHL_A]
Length=73

 Score =  136 bits (342),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 71/73 (98%), Positives = 73/73 (100%), Gaps = 0/73 (0%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPVIRVPAGTPP  60
           +RTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPVIRVPAGTPP
Sbjct  1   MRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPVIRVPAGTPP  60

Query  61  ITPEMVRRALDED  73
           ITPEMVRRALD+D
Sbjct  61  ITPEMVRRALDKD  73


>gi|15842065|ref|NP_337102.1| hypothetical protein MT2606 [Mycobacterium tuberculosis CDC1551]
 gi|31793712|ref|NP_856205.1| hypothetical protein Mb2559Ac [Mycobacterium bovis AF2122/97]
 gi|57116999|ref|YP_177672.1| hypothetical protein Rv2530A [Mycobacterium tuberculosis H37Rv]
 68 more sequence titles
 Length=74

 Score = 68.6 bits (166),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 38/73 (53%), Positives = 50/73 (69%), Gaps = 0/73 (0%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPVIRVPAGTPP  60
           +RTTL +DDDV+  AR +A S+ +S+G+VISELARR L P  +   DG PV  VP   P 
Sbjct  1   MRTTLQIDDDVLEDARSIARSEGKSVGAVISELARRSLRPVGIVEVDGFPVFDVPPDAPT  60

Query  61  ITPEMVRRALDED  73
           +T E V RAL++D
Sbjct  61  VTSEDVVRALEDD  73


>gi|289575235|ref|ZP_06455462.1| antitoxin [Mycobacterium tuberculosis K85]
 gi|339632557|ref|YP_004724199.1| hypothetical protein MAF_25460 [Mycobacterium africanum GM041182]
 gi|289539666|gb|EFD44244.1| antitoxin [Mycobacterium tuberculosis K85]
 gi|339331913|emb|CCC27616.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
Length=74

 Score = 66.6 bits (161),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 37/73 (51%), Positives = 49/73 (68%), Gaps = 0/73 (0%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPVIRVPAGTPP  60
           +RTTL +DDDV+   R +A S+ +S+G+VISELARR L P  +   DG PV  VP   P 
Sbjct  1   MRTTLQIDDDVLEDVRSIARSEGKSVGAVISELARRSLRPVGIVEVDGFPVFDVPPDAPT  60

Query  61  ITPEMVRRALDED  73
           +T E V RAL++D
Sbjct  61  VTSEDVVRALEDD  73


>gi|241518560|ref|YP_002979188.1| hypothetical protein Rleg_5863 [Rhizobium leguminosarum bv. trifolii 
WSM1325]
 gi|240862973|gb|ACS60637.1| conserved hypothetical protein [Rhizobium leguminosarum bv. trifolii 
WSM1325]
Length=75

 Score = 60.8 bits (146),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 35/73 (48%), Positives = 48/73 (66%), Gaps = 1/73 (1%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGL-MPGRVEADDGLPVIRVPAGTP  59
           +RTTL +DDDV+ AA+ +A+ Q RS+G VISELARR L  P      +G+P++     TP
Sbjct  1   MRTTLAIDDDVLTAAKAMATQQHRSVGEVISELARRSLRRPPSSGERNGIPLLSTRPDTP  60

Query  60  PITPEMVRRALDE  72
           P+T E+V    DE
Sbjct  61  PVTLEIVNAMRDE  73


>gi|304413693|ref|ZP_07395137.1| hypothetical protein REG_0768 [Candidatus Regiella insecticola 
LSR1]
 gi|304283784|gb|EFL92178.1| hypothetical protein REG_0768 [Candidatus Regiella insecticola 
LSR1]
Length=82

 Score = 58.9 bits (141),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 32/72 (45%), Positives = 49/72 (69%), Gaps = 0/72 (0%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPVIRVPAGTPP  60
           +RTTL +DDD++AAA+ LA+ Q +SLG+VIS LAR+ L        +G+P++ V +    
Sbjct  9   MRTTLAIDDDILAAAKGLAARQNKSLGAVISSLARQALHVPSHPKRNGIPLLLVRSDGML  68

Query  61  ITPEMVRRALDE  72
           +TPE+V +  DE
Sbjct  69  VTPELVNQLRDE  80


>gi|16264147|ref|NP_436939.1| hypothetical protein SM_b20413 [Sinorhizobium meliloti 1021]
 gi|334319719|ref|YP_004556348.1| hypothetical protein Sinme_3766 [Sinorhizobium meliloti AK83]
 gi|15140272|emb|CAC48799.1| HYPOTHETICAL PROTEIN SM_b20413 [Sinorhizobium meliloti 1021]
 gi|333815878|gb|AEG08545.1| hypothetical protein SinmeB_4262 [Sinorhizobium meliloti BL225C]
 gi|334097458|gb|AEG55468.1| hypothetical protein Sinme_3766 [Sinorhizobium meliloti AK83]
Length=75

 Score = 57.4 bits (137),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 34/73 (47%), Positives = 49/73 (68%), Gaps = 1/73 (1%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEAD-DGLPVIRVPAGTP  59
           +RTTL +DDDV+ AA+ +A+ Q+RS+G VISELARR L   R   + +G+P++      P
Sbjct  1   MRTTLAIDDDVLIAAKAMATQQQRSVGEVISELARRSLRRPRSGGERNGIPLLSPRPDAP  60

Query  60  PITPEMVRRALDE  72
           P+T E+V    DE
Sbjct  61  PVTLEIVNALRDE  73


>gi|336038110|gb|AEH84040.1| hypothetical protein SM11_pD1208 [Sinorhizobium meliloti SM11]
Length=75

 Score = 57.4 bits (137),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 34/73 (47%), Positives = 49/73 (68%), Gaps = 1/73 (1%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEAD-DGLPVIRVPAGTP  59
           +RTTL +DDDV+ AA+ +A+ Q+RS+G VISELARR L   R   + +G+P++      P
Sbjct  1   MRTTLAIDDDVLIAAKAMATQQQRSVGEVISELARRSLRRPRSGGERNGIPLLSPRPDAP  60

Query  60  PITPEMVRRALDE  72
           P+T E+V    DE
Sbjct  61  PVTLEIVNALRDE  73


>gi|344199816|ref|YP_004784142.1| hypothetical protein Acife_1683 [Acidithiobacillus ferrivorans 
SS3]
 gi|343775260|gb|AEM47816.1| hypothetical protein Acife_1683 [Acidithiobacillus ferrivorans 
SS3]
Length=77

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 31/75 (42%), Positives = 47/75 (63%), Gaps = 3/75 (4%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRV---EADDGLPVIRVPAG  57
           +RTTL +DDDV+AAA+ LA  Q +S+G+V+S L R+ L P       + +G+P++ V   
Sbjct  1   MRTTLAIDDDVLAAAKGLADRQHKSVGAVVSALLRQALQPQNTSGGHSRNGIPLLPVRPD  60

Query  58  TPPITPEMVRRALDE  72
             P T E+V +  DE
Sbjct  61  ALPATLEIVNQLRDE  75


>gi|113954589|ref|YP_729373.1| hypothetical protein sync_0136 [Synechococcus sp. CC9311]
 gi|113881940|gb|ABI46898.1| conserved hypothetical protein [Synechococcus sp. CC9311]
Length=81

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 7/80 (8%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARR-------GLMPGRVEADDGLPVIR  53
           +RTTL LDDDV+AAAR LA  +RRS+G VIS+LAR+       G     +E   GLP + 
Sbjct  1   MRTTLRLDDDVLAAARVLARQRRRSVGDVISDLARQTLSRPADGGSQNVLEQRSGLPQLP  60

Query  54  VPAGTPPITPEMVRRALDED  73
           V A    +  E+V +  DE+
Sbjct  61  VKASGGAVDLELVNQLRDEE  80


>gi|294339104|emb|CAZ87458.1| putative transcriptional regulator [Thiomonas sp. 3As]
Length=75

 Score = 52.4 bits (124),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 31/74 (42%), Positives = 47/74 (64%), Gaps = 3/74 (4%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLM--PGRVEADDGLPVIRVPAGT  58
           +RTT+ +DDDV+ AAR LA+ Q +S+G V+S LAR+ L   P   E  +G+P++      
Sbjct  1   MRTTVSIDDDVLNAARHLAARQHKSVGEVLSALARQALRREPALAE-RNGVPLLASQPDA  59

Query  59  PPITPEMVRRALDE  72
            P+T E+V +  DE
Sbjct  60  KPVTLELVNQLRDE  73


>gi|196230684|ref|ZP_03129545.1| conserved hypothetical protein [Chthoniobacter flavus Ellin428]
 gi|196225025|gb|EDY19534.1| conserved hypothetical protein [Chthoniobacter flavus Ellin428]
Length=80

 Score = 52.4 bits (124),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 32/74 (44%), Positives = 49/74 (67%), Gaps = 8/74 (10%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMP-GRVEAD-----DGLPVIRV  54
           +RTTLD+D DV+AAA+E+++  +RS+G VIS+LAR  L+  G+ +A      +G  VI  
Sbjct  1   MRTTLDIDSDVLAAAKEISARTKRSVGHVISDLARAALLKRGKSKARISRMINGFEVI--  58

Query  55  PAGTPPITPEMVRR  68
            A    +T E+VR+
Sbjct  59  SADGRVVTSELVRK  72


>gi|340358884|ref|ZP_08681387.1| hypothetical protein HMPREF9062_0512 [Actinomyces sp. oral taxon 
448 str. F0400]
 gi|339885630|gb|EGQ75339.1| hypothetical protein HMPREF9062_0512 [Actinomyces sp. oral taxon 
448 str. F0400]
Length=77

 Score = 52.0 bits (123),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 34/76 (45%), Positives = 46/76 (61%), Gaps = 3/76 (3%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADD-GLPVIRVPAGTP  59
           +RTTLD+DD V+A ARE A  +  SLG  +S+ A RG+  G  +A   G+PV   P G P
Sbjct  1   MRTTLDIDDSVLAVAREKARREGLSLGRAVSDYALRGIRGGGPDAGSRGVPVFTPPQGGP  60

Query  60  P--ITPEMVRRALDED  73
           P  +T ++V R  D D
Sbjct  61  PHTVTLDLVERHRDGD  76


>gi|325069051|ref|ZP_08127724.1| hypothetical protein AoriK_14579 [Actinomyces oris K20]
Length=76

 Score = 51.6 bits (122),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 46/75 (62%), Gaps = 2/75 (2%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPVIRVPAGTPP  60
           +RTTL++DD V++ ARE A     SLG  +S+LA RG+  G   +  G+P+   PAG   
Sbjct  1   MRTTLEIDDRVLSLARERAHRDGVSLGRAVSDLALRGISHGGRTSRHGIPLFFPPAGQQA  60

Query  61  --ITPEMVRRALDED  73
             +TPE++ +  D+D
Sbjct  61  HVVTPELIEQYRDDD  75


>gi|317967918|ref|ZP_07969308.1| hypothetical protein SCB02_00122 [Synechococcus sp. CB0205]
Length=86

 Score = 50.4 bits (119),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 25/38 (66%), Positives = 33/38 (87%), Gaps = 0/38 (0%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGL  38
           +RTTL LDDDV+AAA+ LA  +++ +GSVISELAR+GL
Sbjct  8   MRTTLSLDDDVLAAAKVLARQRKQPIGSVISELARQGL  45


>gi|218458497|ref|ZP_03498588.1| hypothetical protein RetlK5_03168 [Rhizobium etli Kim 5]
Length=63

 Score = 49.7 bits (117),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 27/53 (51%), Positives = 38/53 (72%), Gaps = 1/53 (1%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGL-MPGRVEADDGLPVI  52
           +RTTL +DDDV+ AA+ +A+ Q RS+G VISELARR L  P      +G+P++
Sbjct  7   MRTTLAIDDDVLIAAKAMATQQHRSVGEVISELARRSLRRPPSSGERNGIPLL  59


>gi|225874393|ref|YP_002755852.1| hypothetical protein ACP_2836 [Acidobacterium capsulatum ATCC 
51196]
 gi|225793202|gb|ACO33292.1| conserved hypothetical protein [Acidobacterium capsulatum ATCC 
51196]
Length=74

 Score = 48.5 bits (114),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 29/68 (43%), Positives = 40/68 (59%), Gaps = 1/68 (1%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLM-PGRVEADDGLPVIRVPAGTP  59
           +RTTL LDDDV    R  A ++   LG  ++EL RR ++ P      +GL V  +PA + 
Sbjct  1   MRTTLALDDDVFEEVRSYAEARDLPLGRAVTELLRRAMVQPAPTRRVNGLLVFDLPADSS  60

Query  60  PITPEMVR  67
           P+T EMVR
Sbjct  61  PVTDEMVR  68


>gi|134291478|ref|YP_001115247.1| hypothetical protein Bcep1808_6070 [Burkholderia vietnamiensis 
G4]
 gi|134134667|gb|ABO58992.1| conserved hypothetical protein [Burkholderia vietnamiensis G4]
Length=85

 Score = 48.5 bits (114),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 32/74 (44%), Positives = 45/74 (61%), Gaps = 3/74 (4%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEAD--DGLPVIRVPAGT  58
           +RTT+D+DDDV+A ARE A     S+G VIS+LAR  L  G       +GLP++ V A  
Sbjct  11  MRTTIDIDDDVLAFARERAKPG-TSIGKVISDLARAALQRGTTNQSSRNGLPLMPVSATA  69

Query  59  PPITPEMVRRALDE  72
            P+T + V +  D+
Sbjct  70  RPVTLDTVNQLRDD  83


>gi|56478773|ref|YP_160362.1| hypothetical protein ebA5867 [Aromatoleum aromaticum EbN1]
 gi|56314816|emb|CAI09461.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
Length=81

 Score = 47.8 bits (112),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 22/39 (57%), Positives = 31/39 (80%), Gaps = 0/39 (0%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLM  39
           +RTTLD++ DV+AAA+E+A  Q  S+G VIS+L RR L+
Sbjct  1   MRTTLDIESDVLAAAKEIARQQHTSVGKVISQLVRRTLI  39


>gi|206601847|gb|EDZ38330.1| Hypothetical protein CGL2_11278039 [Leptospirillum sp. Group 
II '5-way CG']
Length=152

 Score = 47.8 bits (112),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 23/39 (59%), Positives = 31/39 (80%), Gaps = 0/39 (0%)

Query  1    VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLM  39
            +RTTLD+D+DV+  ARELA  Q +S+G VIS+L R+ LM
Sbjct  73   MRTTLDIDEDVLETARELARRQGKSIGKVISDLGRQALM  111


>gi|87123103|ref|ZP_01078954.1| hypothetical protein RS9917_04570 [Synechococcus sp. RS9917]
 gi|86168823|gb|EAQ70079.1| hypothetical protein RS9917_04570 [Synechococcus sp. RS9917]
Length=79

 Score = 47.0 bits (110),  Expect = 9e-04, Method: Compositional matrix adjust.
 Identities = 33/78 (43%), Positives = 46/78 (59%), Gaps = 5/78 (6%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGL-MPGRVE----ADDGLPVIRVP  55
           +RTTL LDDDV+ AAR LA  Q  S+G VISELAR+ L  P  +E       GLP++ + 
Sbjct  1   MRTTLQLDDDVLDAARVLARQQHLSVGEVISELARQALRRPAGLEEPPSERSGLPLLPIK  60

Query  56  AGTPPITPEMVRRALDED  73
           +    +   +V +  DE+
Sbjct  61  SSGGVVDLNLVNQLRDEE  78


>gi|337267946|ref|YP_004612001.1| hypothetical protein Mesop_3461 [Mesorhizobium opportunistum 
WSM2075]
 gi|336028256|gb|AEH87907.1| conserved hypothetical protein [Mesorhizobium opportunistum WSM2075]
Length=87

 Score = 45.8 bits (107),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 27/63 (43%), Positives = 40/63 (64%), Gaps = 1/63 (1%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGL-MPGRVEADDGLPVIRVPAGTP  59
           +RTTL +DDDV+ AA+ +A  Q RS+G VIS+LAR+ L  P      +G+P++      P
Sbjct  1   MRTTLAIDDDVLLAAKAMARQQDRSIGEVISDLARQSLRRPQAGGERNGIPLLSARPDDP  60

Query  60  PIT  62
           P+ 
Sbjct  61  PLV  63


>gi|87123275|ref|ZP_01079126.1| hypothetical protein RS9917_05430 [Synechococcus sp. RS9917]
 gi|86168995|gb|EAQ70251.1| hypothetical protein RS9917_05430 [Synechococcus sp. RS9917]
Length=82

 Score = 45.1 bits (105),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 21/38 (56%), Positives = 29/38 (77%), Gaps = 0/38 (0%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGL  38
           +RTTLD+DDD++ AA++LA  QR S G V+S L R+ L
Sbjct  1   MRTTLDIDDDLLQAAKDLAKQQRMSAGQVVSTLLRQAL  38


>gi|114331351|ref|YP_747573.1| hypothetical protein Neut_1360 [Nitrosomonas eutropha C91]
 gi|114308365|gb|ABI59608.1| conserved hypothetical protein [Nitrosomonas eutropha C91]
Length=92

 Score = 45.1 bits (105),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 29/79 (37%), Positives = 46/79 (59%), Gaps = 6/79 (7%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEA---DDGLPVIR---V  54
           VRTT+D+++DV+AAA+E+A ++  S+G VIS L R+ L     E    DD   V      
Sbjct  12  VRTTIDIENDVLAAAKEIARTENVSVGKVISRLVRQALAGHVAEVSSPDDASSVTGFRPF  71

Query  55  PAGTPPITPEMVRRALDED  73
           P+    ++ E++ R  DE+
Sbjct  72  PSRGVIVSNELINRLRDEE  90


>gi|334319153|ref|YP_004551712.1| hypothetical protein Sinme_6079 [Sinorhizobium meliloti AK83]
 gi|333814848|gb|AEG07516.1| hypothetical protein SinmeB_6397 [Sinorhizobium meliloti BL225C]
 gi|334099580|gb|AEG57589.1| hypothetical protein Sinme_6079 [Sinorhizobium meliloti AK83]
Length=47

 Score = 41.6 bits (96),  Expect = 0.042, Method: Compositional matrix adjust.
 Identities = 21/41 (52%), Positives = 29/41 (71%), Gaps = 0/41 (0%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPG  41
           +RTTL ++DDV  AAR +A+ Q++ +G VISELAR    P 
Sbjct  1   MRTTLSIEDDVRIAARAMATQQQQRIGEVISELARAFTEPA  41


>gi|336035908|gb|AEH81839.1| hypothetical protein SM11_pC0766 [Sinorhizobium meliloti SM11]
Length=54

 Score = 41.6 bits (96),  Expect = 0.045, Method: Compositional matrix adjust.
 Identities = 21/41 (52%), Positives = 29/41 (71%), Gaps = 0/41 (0%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPG  41
           +RTTL ++DDV  AAR +A+ Q++ +G VISELAR    P 
Sbjct  8   MRTTLSIEDDVRIAARAMATQQQQRIGEVISELARAFTEPA  48


>gi|336179655|ref|YP_004585030.1| hypothetical protein FsymDg_3832 [Frankia symbiont of Datisca 
glomerata]
 gi|334860635|gb|AEH11109.1| hypothetical protein, antitoxin [Frankia symbiont of Datisca 
glomerata]
Length=84

 Score = 40.8 bits (94),  Expect = 0.068, Method: Compositional matrix adjust.
 Identities = 34/78 (44%), Positives = 46/78 (59%), Gaps = 9/78 (11%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGL-MPGRVEAD----DGLPVIRVP  55
           +RTT+DL DD+   A  +A   RR+L   +++L RRGL   G  E       GLPV+R+ 
Sbjct  1   MRTTIDLSDDLHRQALSIARGTRRTLSDTVADLIRRGLGQSGAAEVSRSERTGLPVVRL-  59

Query  56  AGTPPITPEMVRRALDED  73
            GT  IT E V RA+D+D
Sbjct  60  -GT-VITSEDV-RAMDDD  74


>gi|15610457|ref|NP_217838.1| hypothetical protein Rv3321c [Mycobacterium tuberculosis H37Rv]
 gi|15842913|ref|NP_337950.1| CopG family DNA-binding protein [Mycobacterium tuberculosis CDC1551]
 gi|31794502|ref|NP_856995.1| hypothetical protein Mb3350c [Mycobacterium bovis AF2122/97]
 77 more sequence titles
 Length=80

 Score = 40.0 bits (92),  Expect = 0.13, Method: Compositional matrix adjust.
 Identities = 18/38 (48%), Positives = 29/38 (77%), Gaps = 0/38 (0%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGL  38
           +RTTL +DDDV+ A +E A  ++R+ G ++S+LAR+ L
Sbjct  1   MRTTLSIDDDVLLAVKERARREKRTAGEILSDLARQAL  38


>gi|229822545|ref|YP_002884071.1| CopG family DNA-binding protein [Beutenbergia cavernae DSM 12333]
 gi|229568458|gb|ACQ82309.1| CopG family DNA-binding protein [Beutenbergia cavernae DSM 12333]
Length=80

 Score = 38.1 bits (87),  Expect = 0.39, Method: Compositional matrix adjust.
 Identities = 21/41 (52%), Positives = 26/41 (64%), Gaps = 0/41 (0%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPG  41
           +RTT+ LDDDV AAA  L   +   LG  ++ELAR GL  G
Sbjct  1   MRTTIRLDDDVAAAAERLRRERHIGLGEAVNELARAGLHRG  41


>gi|33864608|ref|NP_896167.1| hypothetical protein SYNW0072 [Synechococcus sp. WH 8102]
 gi|33632131|emb|CAE06587.1| hypothetical protein SYNW0072 [Synechococcus sp. WH 8102]
Length=102

 Score = 37.4 bits (85),  Expect = 0.84, Method: Compositional matrix adjust.
 Identities = 25/64 (40%), Positives = 38/64 (60%), Gaps = 11/64 (17%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGL-------MPGR---VEAD-DGL  49
           ++TT+DL D +I  A++ A  Q+R+L  +I++  R+GL       MP     VE D  GL
Sbjct  1   MKTTIDLPDALIQQAKQRALQQKRTLKDLIADYIRQGLKGTSLSAMPAASSLVETDATGL  60

Query  50  PVIR  53
           P+IR
Sbjct  61  PLIR  64


>gi|336115787|ref|YP_004570553.1| hypothetical protein MLP_01360 [Microlunatus phosphovorus NM-1]
 gi|334683565|dbj|BAK33150.1| hypothetical protein MLP_01360 [Microlunatus phosphovorus NM-1]
Length=75

 Score = 37.0 bits (84),  Expect = 0.95, Method: Compositional matrix adjust.
 Identities = 32/77 (42%), Positives = 46/77 (60%), Gaps = 7/77 (9%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLM--PGRVEADDGLPVIRVPAGT  58
           +RTTLDLD  V++AAR  A+++R SLG  +SELA  GL     +     G PV+   +G 
Sbjct  1   MRTTLDLDPVVLSAARAKAAAERISLGKAVSELALSGLRAPSSQFTTASGFPVL---SGV  57

Query  59  P--PITPEMVRRALDED  73
           P  P+T E+V    D++
Sbjct  58  PGRPVTDELVAAHRDDE  74


>gi|115974863|ref|XP_001182524.1| PREDICTED: similar to nephrin [Strongylocentrotus purpuratus]
Length=1500

 Score = 36.6 bits (83),  Expect = 1.2, Method: Composition-based stats.
 Identities = 19/51 (38%), Positives = 29/51 (57%), Gaps = 4/51 (7%)

Query  22   QRRSLGSVISELARRGLMPGRVEADDGLPVIRVPAGTPPITPEMVRRALDE  72
            Q+  LGS+  EL    L+P R     G PV  + + TPP++P+ ++R  DE
Sbjct  99   QKSDLGSLSGELLTGSLVPNRT----GAPVPMLGSQTPPLSPDQIKRCADE  145


>gi|330818819|ref|YP_004351036.1| hypothetical protein bgla_3p0110 [Burkholderia gladioli BSR3]
 gi|327374361|gb|AEA65713.1| hypothetical protein bgla_3p0110 [Burkholderia gladioli BSR3]
Length=73

 Score = 36.6 bits (83),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 32/74 (44%), Positives = 46/74 (63%), Gaps = 5/74 (6%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEAD--DGLPVIRVPAGT  58
           +RTTL++DDDV+A AR  A  +  S+G +IS+LAR  L P        +GLPV+  P+  
Sbjct  1   MRTTLEIDDDVLALARARADREHVSIGRIISQLARAALQPAAAAPTTRNGLPVL--PSAR  58

Query  59  PPITPEMVRRALDE  72
             +TPE+V +  DE
Sbjct  59  -TVTPELVNQLRDE  71


>gi|300780205|ref|ZP_07090061.1| toxin-antitoxin system [Corynebacterium genitalium ATCC 33030]
 gi|300534315|gb|EFK55374.1| toxin-antitoxin system [Corynebacterium genitalium ATCC 33030]
Length=80

 Score = 35.8 bits (81),  Expect = 2.3, Method: Compositional matrix adjust.
 Identities = 21/51 (42%), Positives = 34/51 (67%), Gaps = 1/51 (1%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPV  51
           +R T+ LD++V  AAR +A+ +  S+G  +++LAR GL P R  A D +P+
Sbjct  1   MRLTIRLDEEVYTAARAIAAEKGTSVGEAVNDLARAGL-PRRDSAVDYIPM  50


>gi|86738905|ref|YP_479305.1| hypothetical protein Francci3_0184 [Frankia sp. CcI3]
 gi|86565767|gb|ABD09576.1| hypothetical protein Francci3_0184 [Frankia sp. CcI3]
Length=184

 Score = 35.4 bits (80),  Expect = 2.5, Method: Compositional matrix adjust.
 Identities = 25/61 (41%), Positives = 33/61 (55%), Gaps = 2/61 (3%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPV-IRVPAGTP  59
           +RTT+DL DD+   A  +A    R+L    ++L RRGL  GR      LP  + VP  TP
Sbjct  1   MRTTIDLPDDLHRQAMSIARDTSRTLSETAADLMRRGLGQGR-PTHAYLPFDLTVPPDTP  59

Query  60  P  60
           P
Sbjct  60  P  60


>gi|241948955|ref|XP_002417200.1| nuclear pore protein NUP170, putative; nucleoporin NUP170, putative 
[Candida dubliniensis CD36]
 gi|223640538|emb|CAX44792.1| nuclear pore protein NUP170, putative [Candida dubliniensis CD36]
Length=1426

 Score = 35.4 bits (80),  Expect = 2.6, Method: Composition-based stats.
 Identities = 23/60 (39%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query  4   TLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPVIRVP--AGTPPI  61
           TL L DDV+A +  L   Q +S GS   +L+RR + P  +E+ +    I VP  A  PP+
Sbjct  26  TLKLQDDVVADS--LQFHQDKSTGSSRGQLSRRFVQPAGLESKESNYKINVPDFANLPPL  83


>gi|340627619|ref|YP_004746071.1| hypothetical protein MCAN_26441 [Mycobacterium canettii CIPT 
140010059]
 gi|340005809|emb|CCC44975.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=95

 Score = 34.7 bits (78),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 28/83 (34%), Positives = 42/83 (51%), Gaps = 17/83 (20%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGL----------MPGRVEADDGLP  50
           ++TTLDL D+++ A +  A+ Q R +  V++EL R GL           P RV+    LP
Sbjct  1   MKTTLDLPDELMRAIKVRAAQQGRKMKDVVTELLRSGLSQTHSGAPIPTPRRVQ----LP  56

Query  51  VIRVPAGT---PPITPEMVRRAL  70
           ++     T     +TPE V  AL
Sbjct  57  LVHCSGATTREQEMTPERVAAAL  79


>gi|15843316|ref|NP_338353.1| CopG family DNA-binding protein [Mycobacterium tuberculosis CDC1551]
 gi|121639612|ref|YP_979836.1| antitoxin [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148663561|ref|YP_001285084.1| hypothetical protein MRA_3733 [Mycobacterium tuberculosis H37Ra]
 48 more sequence titles
 Length=74

 Score = 34.7 bits (78),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 16/38 (43%), Positives = 26/38 (69%), Gaps = 0/38 (0%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGL  38
           +RTT+DLDDD++ A +     +R++LG + SEL  + L
Sbjct  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQAL  38


>gi|306778586|ref|ZP_07416923.1| antitoxin [Mycobacterium tuberculosis SUMu002]
 gi|306786609|ref|ZP_07424931.1| antitoxin [Mycobacterium tuberculosis SUMu003]
 gi|306790975|ref|ZP_07429297.1| antitoxin [Mycobacterium tuberculosis SUMu004]
 13 more sequence titles
 Length=74

 Score = 34.7 bits (78),  Expect = 4.9, Method: Compositional matrix adjust.
 Identities = 16/38 (43%), Positives = 26/38 (69%), Gaps = 0/38 (0%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGL  38
           +RTT+DLDDD++ A +     +R++LG + SEL  + L
Sbjct  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQAL  38


>gi|15827187|ref|NP_301450.1| hypothetical protein ML0525 [Mycobacterium leprae TN]
 gi|221229665|ref|YP_002503081.1| hypothetical protein MLBr_00525 [Mycobacterium leprae Br4923]
 gi|13092735|emb|CAC30033.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219932772|emb|CAR70618.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=58

 Score = 34.3 bits (77),  Expect = 5.8, Method: Compositional matrix adjust.
 Identities = 21/44 (48%), Positives = 25/44 (57%), Gaps = 0/44 (0%)

Query  16  RELASSQRRSLGSVISELARRGLMPGRVEADDGLPVIRVPAGTP  59
           R +A     S+G +IS LAR  L PG V   DGLPV+ VP   P
Sbjct  15  RNIAQPGGHSVGVMISGLARSPLRPGGVVEVDGLPVLDVPQPAP  58


>gi|15840019|ref|NP_335056.1| hypothetical protein MT0645.2 [Mycobacterium tuberculosis CDC1551]
 gi|121636536|ref|YP_976759.1| antitoxin [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|167969042|ref|ZP_02551319.1| hypothetical protein MtubH3_13852 [Mycobacterium tuberculosis 
H37Ra]
 56 more sequence titles
 Length=75

 Score = 34.3 bits (77),  Expect = 6.4, Method: Compositional matrix adjust.
 Identities = 29/77 (38%), Positives = 40/77 (52%), Gaps = 8/77 (10%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEA-----DDGLPVIRVP  55
           +RTT+DL  D+   A  +A    R+L   +++L RRGL   R  A       GLP++ V 
Sbjct  1   MRTTIDLPQDLHKQALAIARDTHRTLSETVADLMRRGLAANRPTALSSDPRTGLPLVSV-  59

Query  56  AGTPPITPEMVRRALDE  72
            GT  +T E VR   DE
Sbjct  60  -GT-VVTSEDVRSLEDE  74


>gi|320109070|ref|YP_004184660.1| hypothetical protein AciPR4_3917 [Terriglobus saanensis SP1PR4]
 gi|319927591|gb|ADV84666.1| hypothetical protein AciPR4_3917 [Terriglobus saanensis SP1PR4]
Length=86

 Score = 34.3 bits (77),  Expect = 6.6, Method: Compositional matrix adjust.
 Identities = 28/81 (35%), Positives = 43/81 (54%), Gaps = 10/81 (12%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPVIR-------  53
           VR T++LD DV +     A ++  +L + +SEL RR       EA   LP ++       
Sbjct  6   VRLTVNLDADVYSFTSAYAGAKGITLSAALSELVRRAEQA--PEAGSDLPRLKTSQHGYL  63

Query  54  VPAGTP-PITPEMVRRALDED  73
           V AGT   +TPEMV+ A +++
Sbjct  64  VVAGTGDKLTPEMVKEASEDE  84


>gi|15840686|ref|NP_335723.1| hypothetical protein MT1279 [Mycobacterium tuberculosis CDC1551]
 gi|13880873|gb|AAK45537.1| hypothetical protein MT1279 [Mycobacterium tuberculosis CDC1551]
Length=98

 Score = 33.9 bits (76),  Expect = 7.4, Method: Compositional matrix adjust.
 Identities = 17/40 (43%), Positives = 24/40 (60%), Gaps = 0/40 (0%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMP  40
           +RTTL LDDDV+    +    +RR +  VI++  RR L P
Sbjct  13  MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAP  52


>gi|88810688|ref|ZP_01125945.1| hypothetical protein NB231_16448 [Nitrococcus mobilis Nb-231]
 gi|88792318|gb|EAR23428.1| hypothetical protein NB231_16448 [Nitrococcus mobilis Nb-231]
Length=92

 Score = 33.9 bits (76),  Expect = 7.9, Method: Compositional matrix adjust.
 Identities = 23/75 (31%), Positives = 40/75 (54%), Gaps = 4/75 (5%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPVIRVPAGT--  58
           +RTT+ L+ DV A  +ELA  +R S    ++++ R+GL   + +A    P +  P     
Sbjct  5   MRTTVTLEPDVAAKLKELAHRRRASFKETLNDVLRKGLT-SQAKAGRSEPFVVKPHSGGF  63

Query  59  -PPITPEMVRRALDE  72
            P I P+ + + LD+
Sbjct  64  RPGIDPDKLNQLLDQ  78


>gi|330808538|ref|YP_004353000.1| hypothetical protein PSEBR_a1783 [Pseudomonas brassicacearum 
subsp. brassicacearum NFM421]
 gi|327376646|gb|AEA67996.1| conserved hypothetical protein [Pseudomonas brassicacearum subsp. 
brassicacearum NFM421]
Length=68

 Score = 33.9 bits (76),  Expect = 8.0, Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 25/40 (63%), Gaps = 0/40 (0%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMP  40
            R T+ LDD+VI AARE A +      +VI+ L R+GL+ 
Sbjct  22  TRITIMLDDEVIKAARERAENVGTGYQAVINHLLRQGLLS  61


>gi|210631756|ref|ZP_03296998.1| hypothetical protein COLSTE_00883 [Collinsella stercoris DSM 
13279]
 gi|210159876|gb|EEA90847.1| hypothetical protein COLSTE_00883 [Collinsella stercoris DSM 
13279]
Length=316

 Score = 33.9 bits (76),  Expect = 8.0, Method: Compositional matrix adjust.
 Identities = 25/66 (38%), Positives = 35/66 (54%), Gaps = 4/66 (6%)

Query  10   DVIAAARELASSQRRSLGSVISELAR---RGLMPGRVEADDGLPVIRVPAGTPPITPEMV  66
            +V+ + R    S++ + GSV++  AR    G    RV  DDGL VI       P TP MV
Sbjct  157  EVLESVRAYVPSKQGNRGSVVTLEARDLNMGYRKSRVH-DDGLIVISATFKLSPSTPAMV  215

Query  67   RRALDE  72
            R A+D+
Sbjct  216  RAAMDD  221


>gi|254364141|ref|ZP_04980187.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|289554970|ref|ZP_06444180.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|289744986|ref|ZP_06504364.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|134149655|gb|EBA41700.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|289439602|gb|EFD22095.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|289685514|gb|EFD53002.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|328459460|gb|AEB04883.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
4207]
Length=90

 Score = 33.9 bits (76),  Expect = 8.5, Method: Compositional matrix adjust.
 Identities = 17/40 (43%), Positives = 24/40 (60%), Gaps = 0/40 (0%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMP  40
           +RTTL LDDDV+    +    +RR +  VI++  RR L P
Sbjct  5   MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAP  44


>gi|87123267|ref|ZP_01079118.1| hypothetical protein RS9917_05390 [Synechococcus sp. RS9917]
 gi|86168987|gb|EAQ70243.1| hypothetical protein RS9917_05390 [Synechococcus sp. RS9917]
Length=102

 Score = 33.9 bits (76),  Expect = 8.5, Method: Compositional matrix adjust.
 Identities = 24/64 (38%), Positives = 37/64 (58%), Gaps = 11/64 (17%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLM-------PGR---VEAD-DGL  49
           ++TT+DL D +I  A++ A  Q+R+L  +I++  R+GL        P     VE D  GL
Sbjct  1   MKTTIDLPDALIQQAKQRALQQKRTLKDLIADYIRQGLKGPSCGTSPAASILVETDATGL  60

Query  50  PVIR  53
           P+IR
Sbjct  61  PLIR  64


>gi|15608381|ref|NP_215757.1| hypothetical protein Rv1241 [Mycobacterium tuberculosis H37Rv]
 gi|31792434|ref|NP_854927.1| hypothetical protein Mb1273 [Mycobacterium bovis AF2122/97]
 gi|121637170|ref|YP_977393.1| hypothetical protein BCG_1301 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 68 more sequence titles
 Length=86

 Score = 33.9 bits (76),  Expect = 9.1, Method: Compositional matrix adjust.
 Identities = 17/40 (43%), Positives = 24/40 (60%), Gaps = 0/40 (0%)

Query  1   VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMP  40
           +RTTL LDDDV+    +    +RR +  VI++  RR L P
Sbjct  1   MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAP  40



Lambda     K      H
   0.317    0.136    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131942442484


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40