BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2493
Length=73
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609630|ref|NP_217009.1| hypothetical protein Rv2493 [Mycoba... 137 6e-31
gi|340627507|ref|YP_004745959.1| hypothetical protein MCAN_25321... 136 8e-31
gi|289448138|ref|ZP_06437882.1| antitoxin [Mycobacterium tubercu... 136 1e-30
gi|15842065|ref|NP_337102.1| hypothetical protein MT2606 [Mycoba... 68.6 3e-10
gi|289575235|ref|ZP_06455462.1| antitoxin [Mycobacterium tubercu... 66.6 1e-09
gi|241518560|ref|YP_002979188.1| hypothetical protein Rleg_5863 ... 60.8 6e-08
gi|304413693|ref|ZP_07395137.1| hypothetical protein REG_0768 [C... 58.9 2e-07
gi|16264147|ref|NP_436939.1| hypothetical protein SM_b20413 [Sin... 57.4 7e-07
gi|336038110|gb|AEH84040.1| hypothetical protein SM11_pD1208 [Si... 57.4 7e-07
gi|344199816|ref|YP_004784142.1| hypothetical protein Acife_1683... 52.8 2e-05
gi|113954589|ref|YP_729373.1| hypothetical protein sync_0136 [Sy... 52.8 2e-05
gi|294339104|emb|CAZ87458.1| putative transcriptional regulator ... 52.4 2e-05
gi|196230684|ref|ZP_03129545.1| conserved hypothetical protein [... 52.4 3e-05
gi|340358884|ref|ZP_08681387.1| hypothetical protein HMPREF9062_... 52.0 3e-05
gi|325069051|ref|ZP_08127724.1| hypothetical protein AoriK_14579... 51.6 4e-05
gi|317967918|ref|ZP_07969308.1| hypothetical protein SCB02_00122... 50.4 1e-04
gi|218458497|ref|ZP_03498588.1| hypothetical protein RetlK5_0316... 49.7 1e-04
gi|225874393|ref|YP_002755852.1| hypothetical protein ACP_2836 [... 48.5 3e-04
gi|134291478|ref|YP_001115247.1| hypothetical protein Bcep1808_6... 48.5 4e-04
gi|56478773|ref|YP_160362.1| hypothetical protein ebA5867 [Aroma... 47.8 6e-04
gi|206601847|gb|EDZ38330.1| Hypothetical protein CGL2_11278039 [... 47.8 6e-04
gi|87123103|ref|ZP_01078954.1| hypothetical protein RS9917_04570... 47.0 9e-04
gi|337267946|ref|YP_004612001.1| hypothetical protein Mesop_3461... 45.8 0.002
gi|87123275|ref|ZP_01079126.1| hypothetical protein RS9917_05430... 45.1 0.004
gi|114331351|ref|YP_747573.1| hypothetical protein Neut_1360 [Ni... 45.1 0.004
gi|334319153|ref|YP_004551712.1| hypothetical protein Sinme_6079... 41.6 0.042
gi|336035908|gb|AEH81839.1| hypothetical protein SM11_pC0766 [Si... 41.6 0.045
gi|336179655|ref|YP_004585030.1| hypothetical protein FsymDg_383... 40.8 0.068
gi|15610457|ref|NP_217838.1| hypothetical protein Rv3321c [Mycob... 40.0 0.13
gi|229822545|ref|YP_002884071.1| CopG family DNA-binding protein... 38.1 0.39
gi|33864608|ref|NP_896167.1| hypothetical protein SYNW0072 [Syne... 37.4 0.84
gi|336115787|ref|YP_004570553.1| hypothetical protein MLP_01360 ... 37.0 0.95
gi|115974863|ref|XP_001182524.1| PREDICTED: similar to nephrin [... 36.6 1.2
gi|330818819|ref|YP_004351036.1| hypothetical protein bgla_3p011... 36.6 1.3
gi|300780205|ref|ZP_07090061.1| toxin-antitoxin system [Coryneba... 35.8 2.3
gi|86738905|ref|YP_479305.1| hypothetical protein Francci3_0184 ... 35.4 2.5
gi|241948955|ref|XP_002417200.1| nuclear pore protein NUP170, pu... 35.4 2.6
gi|340627619|ref|YP_004746071.1| hypothetical protein MCAN_26441... 34.7 4.8
gi|15843316|ref|NP_338353.1| CopG family DNA-binding protein [My... 34.7 4.8
gi|306778586|ref|ZP_07416923.1| antitoxin [Mycobacterium tubercu... 34.7 4.9
gi|15827187|ref|NP_301450.1| hypothetical protein ML0525 [Mycoba... 34.3 5.8
gi|15840019|ref|NP_335056.1| hypothetical protein MT0645.2 [Myco... 34.3 6.4
gi|320109070|ref|YP_004184660.1| hypothetical protein AciPR4_391... 34.3 6.6
gi|15840686|ref|NP_335723.1| hypothetical protein MT1279 [Mycoba... 33.9 7.4
gi|88810688|ref|ZP_01125945.1| hypothetical protein NB231_16448 ... 33.9 7.9
gi|330808538|ref|YP_004353000.1| hypothetical protein PSEBR_a178... 33.9 8.0
gi|210631756|ref|ZP_03296998.1| hypothetical protein COLSTE_0088... 33.9 8.0
gi|254364141|ref|ZP_04980187.1| conserved hypothetical protein [... 33.9 8.5
gi|87123267|ref|ZP_01079118.1| hypothetical protein RS9917_05390... 33.9 8.5
gi|15608381|ref|NP_215757.1| hypothetical protein Rv1241 [Mycoba... 33.9 9.1
>gi|15609630|ref|NP_217009.1| hypothetical protein Rv2493 [Mycobacterium tuberculosis H37Rv]
gi|15842021|ref|NP_337058.1| hypothetical protein MT2568 [Mycobacterium tuberculosis CDC1551]
gi|31793673|ref|NP_856166.1| hypothetical protein Mb2521 [Mycobacterium bovis AF2122/97]
65 more sequence titles
Length=73
Score = 137 bits (345), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 72/73 (99%), Positives = 73/73 (100%), Gaps = 0/73 (0%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPVIRVPAGTPP 60
+RTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPVIRVPAGTPP
Sbjct 1 MRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPVIRVPAGTPP 60
Query 61 ITPEMVRRALDED 73
ITPEMVRRALDED
Sbjct 61 ITPEMVRRALDED 73
>gi|340627507|ref|YP_004745959.1| hypothetical protein MCAN_25321 [Mycobacterium canettii CIPT
140010059]
gi|340005697|emb|CCC44863.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=73
Score = 136 bits (343), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 71/73 (98%), Positives = 73/73 (100%), Gaps = 0/73 (0%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPVIRVPAGTPP 60
+RTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGR+EADDGLPVIRVPAGTPP
Sbjct 1 MRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRIEADDGLPVIRVPAGTPP 60
Query 61 ITPEMVRRALDED 73
ITPEMVRRALDED
Sbjct 61 ITPEMVRRALDED 73
>gi|289448138|ref|ZP_06437882.1| antitoxin [Mycobacterium tuberculosis CPHL_A]
gi|289421096|gb|EFD18297.1| antitoxin [Mycobacterium tuberculosis CPHL_A]
Length=73
Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/73 (98%), Positives = 73/73 (100%), Gaps = 0/73 (0%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPVIRVPAGTPP 60
+RTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPVIRVPAGTPP
Sbjct 1 MRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPVIRVPAGTPP 60
Query 61 ITPEMVRRALDED 73
ITPEMVRRALD+D
Sbjct 61 ITPEMVRRALDKD 73
>gi|15842065|ref|NP_337102.1| hypothetical protein MT2606 [Mycobacterium tuberculosis CDC1551]
gi|31793712|ref|NP_856205.1| hypothetical protein Mb2559Ac [Mycobacterium bovis AF2122/97]
gi|57116999|ref|YP_177672.1| hypothetical protein Rv2530A [Mycobacterium tuberculosis H37Rv]
68 more sequence titles
Length=74
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/73 (53%), Positives = 50/73 (69%), Gaps = 0/73 (0%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPVIRVPAGTPP 60
+RTTL +DDDV+ AR +A S+ +S+G+VISELARR L P + DG PV VP P
Sbjct 1 MRTTLQIDDDVLEDARSIARSEGKSVGAVISELARRSLRPVGIVEVDGFPVFDVPPDAPT 60
Query 61 ITPEMVRRALDED 73
+T E V RAL++D
Sbjct 61 VTSEDVVRALEDD 73
>gi|289575235|ref|ZP_06455462.1| antitoxin [Mycobacterium tuberculosis K85]
gi|339632557|ref|YP_004724199.1| hypothetical protein MAF_25460 [Mycobacterium africanum GM041182]
gi|289539666|gb|EFD44244.1| antitoxin [Mycobacterium tuberculosis K85]
gi|339331913|emb|CCC27616.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
Length=74
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/73 (51%), Positives = 49/73 (68%), Gaps = 0/73 (0%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPVIRVPAGTPP 60
+RTTL +DDDV+ R +A S+ +S+G+VISELARR L P + DG PV VP P
Sbjct 1 MRTTLQIDDDVLEDVRSIARSEGKSVGAVISELARRSLRPVGIVEVDGFPVFDVPPDAPT 60
Query 61 ITPEMVRRALDED 73
+T E V RAL++D
Sbjct 61 VTSEDVVRALEDD 73
>gi|241518560|ref|YP_002979188.1| hypothetical protein Rleg_5863 [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240862973|gb|ACS60637.1| conserved hypothetical protein [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length=75
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/73 (48%), Positives = 48/73 (66%), Gaps = 1/73 (1%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGL-MPGRVEADDGLPVIRVPAGTP 59
+RTTL +DDDV+ AA+ +A+ Q RS+G VISELARR L P +G+P++ TP
Sbjct 1 MRTTLAIDDDVLTAAKAMATQQHRSVGEVISELARRSLRRPPSSGERNGIPLLSTRPDTP 60
Query 60 PITPEMVRRALDE 72
P+T E+V DE
Sbjct 61 PVTLEIVNAMRDE 73
>gi|304413693|ref|ZP_07395137.1| hypothetical protein REG_0768 [Candidatus Regiella insecticola
LSR1]
gi|304283784|gb|EFL92178.1| hypothetical protein REG_0768 [Candidatus Regiella insecticola
LSR1]
Length=82
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/72 (45%), Positives = 49/72 (69%), Gaps = 0/72 (0%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPVIRVPAGTPP 60
+RTTL +DDD++AAA+ LA+ Q +SLG+VIS LAR+ L +G+P++ V +
Sbjct 9 MRTTLAIDDDILAAAKGLAARQNKSLGAVISSLARQALHVPSHPKRNGIPLLLVRSDGML 68
Query 61 ITPEMVRRALDE 72
+TPE+V + DE
Sbjct 69 VTPELVNQLRDE 80
>gi|16264147|ref|NP_436939.1| hypothetical protein SM_b20413 [Sinorhizobium meliloti 1021]
gi|334319719|ref|YP_004556348.1| hypothetical protein Sinme_3766 [Sinorhizobium meliloti AK83]
gi|15140272|emb|CAC48799.1| HYPOTHETICAL PROTEIN SM_b20413 [Sinorhizobium meliloti 1021]
gi|333815878|gb|AEG08545.1| hypothetical protein SinmeB_4262 [Sinorhizobium meliloti BL225C]
gi|334097458|gb|AEG55468.1| hypothetical protein Sinme_3766 [Sinorhizobium meliloti AK83]
Length=75
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/73 (47%), Positives = 49/73 (68%), Gaps = 1/73 (1%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEAD-DGLPVIRVPAGTP 59
+RTTL +DDDV+ AA+ +A+ Q+RS+G VISELARR L R + +G+P++ P
Sbjct 1 MRTTLAIDDDVLIAAKAMATQQQRSVGEVISELARRSLRRPRSGGERNGIPLLSPRPDAP 60
Query 60 PITPEMVRRALDE 72
P+T E+V DE
Sbjct 61 PVTLEIVNALRDE 73
>gi|336038110|gb|AEH84040.1| hypothetical protein SM11_pD1208 [Sinorhizobium meliloti SM11]
Length=75
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/73 (47%), Positives = 49/73 (68%), Gaps = 1/73 (1%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEAD-DGLPVIRVPAGTP 59
+RTTL +DDDV+ AA+ +A+ Q+RS+G VISELARR L R + +G+P++ P
Sbjct 1 MRTTLAIDDDVLIAAKAMATQQQRSVGEVISELARRSLRRPRSGGERNGIPLLSPRPDAP 60
Query 60 PITPEMVRRALDE 72
P+T E+V DE
Sbjct 61 PVTLEIVNALRDE 73
>gi|344199816|ref|YP_004784142.1| hypothetical protein Acife_1683 [Acidithiobacillus ferrivorans
SS3]
gi|343775260|gb|AEM47816.1| hypothetical protein Acife_1683 [Acidithiobacillus ferrivorans
SS3]
Length=77
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/75 (42%), Positives = 47/75 (63%), Gaps = 3/75 (4%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRV---EADDGLPVIRVPAG 57
+RTTL +DDDV+AAA+ LA Q +S+G+V+S L R+ L P + +G+P++ V
Sbjct 1 MRTTLAIDDDVLAAAKGLADRQHKSVGAVVSALLRQALQPQNTSGGHSRNGIPLLPVRPD 60
Query 58 TPPITPEMVRRALDE 72
P T E+V + DE
Sbjct 61 ALPATLEIVNQLRDE 75
>gi|113954589|ref|YP_729373.1| hypothetical protein sync_0136 [Synechococcus sp. CC9311]
gi|113881940|gb|ABI46898.1| conserved hypothetical protein [Synechococcus sp. CC9311]
Length=81
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 7/80 (8%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARR-------GLMPGRVEADDGLPVIR 53
+RTTL LDDDV+AAAR LA +RRS+G VIS+LAR+ G +E GLP +
Sbjct 1 MRTTLRLDDDVLAAARVLARQRRRSVGDVISDLARQTLSRPADGGSQNVLEQRSGLPQLP 60
Query 54 VPAGTPPITPEMVRRALDED 73
V A + E+V + DE+
Sbjct 61 VKASGGAVDLELVNQLRDEE 80
>gi|294339104|emb|CAZ87458.1| putative transcriptional regulator [Thiomonas sp. 3As]
Length=75
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (42%), Positives = 47/74 (64%), Gaps = 3/74 (4%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLM--PGRVEADDGLPVIRVPAGT 58
+RTT+ +DDDV+ AAR LA+ Q +S+G V+S LAR+ L P E +G+P++
Sbjct 1 MRTTVSIDDDVLNAARHLAARQHKSVGEVLSALARQALRREPALAE-RNGVPLLASQPDA 59
Query 59 PPITPEMVRRALDE 72
P+T E+V + DE
Sbjct 60 KPVTLELVNQLRDE 73
>gi|196230684|ref|ZP_03129545.1| conserved hypothetical protein [Chthoniobacter flavus Ellin428]
gi|196225025|gb|EDY19534.1| conserved hypothetical protein [Chthoniobacter flavus Ellin428]
Length=80
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/74 (44%), Positives = 49/74 (67%), Gaps = 8/74 (10%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMP-GRVEAD-----DGLPVIRV 54
+RTTLD+D DV+AAA+E+++ +RS+G VIS+LAR L+ G+ +A +G VI
Sbjct 1 MRTTLDIDSDVLAAAKEISARTKRSVGHVISDLARAALLKRGKSKARISRMINGFEVI-- 58
Query 55 PAGTPPITPEMVRR 68
A +T E+VR+
Sbjct 59 SADGRVVTSELVRK 72
>gi|340358884|ref|ZP_08681387.1| hypothetical protein HMPREF9062_0512 [Actinomyces sp. oral taxon
448 str. F0400]
gi|339885630|gb|EGQ75339.1| hypothetical protein HMPREF9062_0512 [Actinomyces sp. oral taxon
448 str. F0400]
Length=77
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/76 (45%), Positives = 46/76 (61%), Gaps = 3/76 (3%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADD-GLPVIRVPAGTP 59
+RTTLD+DD V+A ARE A + SLG +S+ A RG+ G +A G+PV P G P
Sbjct 1 MRTTLDIDDSVLAVAREKARREGLSLGRAVSDYALRGIRGGGPDAGSRGVPVFTPPQGGP 60
Query 60 P--ITPEMVRRALDED 73
P +T ++V R D D
Sbjct 61 PHTVTLDLVERHRDGD 76
>gi|325069051|ref|ZP_08127724.1| hypothetical protein AoriK_14579 [Actinomyces oris K20]
Length=76
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (62%), Gaps = 2/75 (2%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPVIRVPAGTPP 60
+RTTL++DD V++ ARE A SLG +S+LA RG+ G + G+P+ PAG
Sbjct 1 MRTTLEIDDRVLSLARERAHRDGVSLGRAVSDLALRGISHGGRTSRHGIPLFFPPAGQQA 60
Query 61 --ITPEMVRRALDED 73
+TPE++ + D+D
Sbjct 61 HVVTPELIEQYRDDD 75
>gi|317967918|ref|ZP_07969308.1| hypothetical protein SCB02_00122 [Synechococcus sp. CB0205]
Length=86
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/38 (66%), Positives = 33/38 (87%), Gaps = 0/38 (0%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGL 38
+RTTL LDDDV+AAA+ LA +++ +GSVISELAR+GL
Sbjct 8 MRTTLSLDDDVLAAAKVLARQRKQPIGSVISELARQGL 45
>gi|218458497|ref|ZP_03498588.1| hypothetical protein RetlK5_03168 [Rhizobium etli Kim 5]
Length=63
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/53 (51%), Positives = 38/53 (72%), Gaps = 1/53 (1%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGL-MPGRVEADDGLPVI 52
+RTTL +DDDV+ AA+ +A+ Q RS+G VISELARR L P +G+P++
Sbjct 7 MRTTLAIDDDVLIAAKAMATQQHRSVGEVISELARRSLRRPPSSGERNGIPLL 59
>gi|225874393|ref|YP_002755852.1| hypothetical protein ACP_2836 [Acidobacterium capsulatum ATCC
51196]
gi|225793202|gb|ACO33292.1| conserved hypothetical protein [Acidobacterium capsulatum ATCC
51196]
Length=74
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/68 (43%), Positives = 40/68 (59%), Gaps = 1/68 (1%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLM-PGRVEADDGLPVIRVPAGTP 59
+RTTL LDDDV R A ++ LG ++EL RR ++ P +GL V +PA +
Sbjct 1 MRTTLALDDDVFEEVRSYAEARDLPLGRAVTELLRRAMVQPAPTRRVNGLLVFDLPADSS 60
Query 60 PITPEMVR 67
P+T EMVR
Sbjct 61 PVTDEMVR 68
>gi|134291478|ref|YP_001115247.1| hypothetical protein Bcep1808_6070 [Burkholderia vietnamiensis
G4]
gi|134134667|gb|ABO58992.1| conserved hypothetical protein [Burkholderia vietnamiensis G4]
Length=85
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/74 (44%), Positives = 45/74 (61%), Gaps = 3/74 (4%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEAD--DGLPVIRVPAGT 58
+RTT+D+DDDV+A ARE A S+G VIS+LAR L G +GLP++ V A
Sbjct 11 MRTTIDIDDDVLAFARERAKPG-TSIGKVISDLARAALQRGTTNQSSRNGLPLMPVSATA 69
Query 59 PPITPEMVRRALDE 72
P+T + V + D+
Sbjct 70 RPVTLDTVNQLRDD 83
>gi|56478773|ref|YP_160362.1| hypothetical protein ebA5867 [Aromatoleum aromaticum EbN1]
gi|56314816|emb|CAI09461.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
Length=81
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/39 (57%), Positives = 31/39 (80%), Gaps = 0/39 (0%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLM 39
+RTTLD++ DV+AAA+E+A Q S+G VIS+L RR L+
Sbjct 1 MRTTLDIESDVLAAAKEIARQQHTSVGKVISQLVRRTLI 39
>gi|206601847|gb|EDZ38330.1| Hypothetical protein CGL2_11278039 [Leptospirillum sp. Group
II '5-way CG']
Length=152
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/39 (59%), Positives = 31/39 (80%), Gaps = 0/39 (0%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLM 39
+RTTLD+D+DV+ ARELA Q +S+G VIS+L R+ LM
Sbjct 73 MRTTLDIDEDVLETARELARRQGKSIGKVISDLGRQALM 111
>gi|87123103|ref|ZP_01078954.1| hypothetical protein RS9917_04570 [Synechococcus sp. RS9917]
gi|86168823|gb|EAQ70079.1| hypothetical protein RS9917_04570 [Synechococcus sp. RS9917]
Length=79
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/78 (43%), Positives = 46/78 (59%), Gaps = 5/78 (6%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGL-MPGRVE----ADDGLPVIRVP 55
+RTTL LDDDV+ AAR LA Q S+G VISELAR+ L P +E GLP++ +
Sbjct 1 MRTTLQLDDDVLDAARVLARQQHLSVGEVISELARQALRRPAGLEEPPSERSGLPLLPIK 60
Query 56 AGTPPITPEMVRRALDED 73
+ + +V + DE+
Sbjct 61 SSGGVVDLNLVNQLRDEE 78
>gi|337267946|ref|YP_004612001.1| hypothetical protein Mesop_3461 [Mesorhizobium opportunistum
WSM2075]
gi|336028256|gb|AEH87907.1| conserved hypothetical protein [Mesorhizobium opportunistum WSM2075]
Length=87
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/63 (43%), Positives = 40/63 (64%), Gaps = 1/63 (1%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGL-MPGRVEADDGLPVIRVPAGTP 59
+RTTL +DDDV+ AA+ +A Q RS+G VIS+LAR+ L P +G+P++ P
Sbjct 1 MRTTLAIDDDVLLAAKAMARQQDRSIGEVISDLARQSLRRPQAGGERNGIPLLSARPDDP 60
Query 60 PIT 62
P+
Sbjct 61 PLV 63
>gi|87123275|ref|ZP_01079126.1| hypothetical protein RS9917_05430 [Synechococcus sp. RS9917]
gi|86168995|gb|EAQ70251.1| hypothetical protein RS9917_05430 [Synechococcus sp. RS9917]
Length=82
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/38 (56%), Positives = 29/38 (77%), Gaps = 0/38 (0%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGL 38
+RTTLD+DDD++ AA++LA QR S G V+S L R+ L
Sbjct 1 MRTTLDIDDDLLQAAKDLAKQQRMSAGQVVSTLLRQAL 38
>gi|114331351|ref|YP_747573.1| hypothetical protein Neut_1360 [Nitrosomonas eutropha C91]
gi|114308365|gb|ABI59608.1| conserved hypothetical protein [Nitrosomonas eutropha C91]
Length=92
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/79 (37%), Positives = 46/79 (59%), Gaps = 6/79 (7%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEA---DDGLPVIR---V 54
VRTT+D+++DV+AAA+E+A ++ S+G VIS L R+ L E DD V
Sbjct 12 VRTTIDIENDVLAAAKEIARTENVSVGKVISRLVRQALAGHVAEVSSPDDASSVTGFRPF 71
Query 55 PAGTPPITPEMVRRALDED 73
P+ ++ E++ R DE+
Sbjct 72 PSRGVIVSNELINRLRDEE 90
>gi|334319153|ref|YP_004551712.1| hypothetical protein Sinme_6079 [Sinorhizobium meliloti AK83]
gi|333814848|gb|AEG07516.1| hypothetical protein SinmeB_6397 [Sinorhizobium meliloti BL225C]
gi|334099580|gb|AEG57589.1| hypothetical protein Sinme_6079 [Sinorhizobium meliloti AK83]
Length=47
Score = 41.6 bits (96), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/41 (52%), Positives = 29/41 (71%), Gaps = 0/41 (0%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPG 41
+RTTL ++DDV AAR +A+ Q++ +G VISELAR P
Sbjct 1 MRTTLSIEDDVRIAARAMATQQQQRIGEVISELARAFTEPA 41
>gi|336035908|gb|AEH81839.1| hypothetical protein SM11_pC0766 [Sinorhizobium meliloti SM11]
Length=54
Score = 41.6 bits (96), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/41 (52%), Positives = 29/41 (71%), Gaps = 0/41 (0%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPG 41
+RTTL ++DDV AAR +A+ Q++ +G VISELAR P
Sbjct 8 MRTTLSIEDDVRIAARAMATQQQQRIGEVISELARAFTEPA 48
>gi|336179655|ref|YP_004585030.1| hypothetical protein FsymDg_3832 [Frankia symbiont of Datisca
glomerata]
gi|334860635|gb|AEH11109.1| hypothetical protein, antitoxin [Frankia symbiont of Datisca
glomerata]
Length=84
Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 34/78 (44%), Positives = 46/78 (59%), Gaps = 9/78 (11%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGL-MPGRVEAD----DGLPVIRVP 55
+RTT+DL DD+ A +A RR+L +++L RRGL G E GLPV+R+
Sbjct 1 MRTTIDLSDDLHRQALSIARGTRRTLSDTVADLIRRGLGQSGAAEVSRSERTGLPVVRL- 59
Query 56 AGTPPITPEMVRRALDED 73
GT IT E V RA+D+D
Sbjct 60 -GT-VITSEDV-RAMDDD 74
>gi|15610457|ref|NP_217838.1| hypothetical protein Rv3321c [Mycobacterium tuberculosis H37Rv]
gi|15842913|ref|NP_337950.1| CopG family DNA-binding protein [Mycobacterium tuberculosis CDC1551]
gi|31794502|ref|NP_856995.1| hypothetical protein Mb3350c [Mycobacterium bovis AF2122/97]
77 more sequence titles
Length=80
Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/38 (48%), Positives = 29/38 (77%), Gaps = 0/38 (0%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGL 38
+RTTL +DDDV+ A +E A ++R+ G ++S+LAR+ L
Sbjct 1 MRTTLSIDDDVLLAVKERARREKRTAGEILSDLARQAL 38
>gi|229822545|ref|YP_002884071.1| CopG family DNA-binding protein [Beutenbergia cavernae DSM 12333]
gi|229568458|gb|ACQ82309.1| CopG family DNA-binding protein [Beutenbergia cavernae DSM 12333]
Length=80
Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/41 (52%), Positives = 26/41 (64%), Gaps = 0/41 (0%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPG 41
+RTT+ LDDDV AAA L + LG ++ELAR GL G
Sbjct 1 MRTTIRLDDDVAAAAERLRRERHIGLGEAVNELARAGLHRG 41
>gi|33864608|ref|NP_896167.1| hypothetical protein SYNW0072 [Synechococcus sp. WH 8102]
gi|33632131|emb|CAE06587.1| hypothetical protein SYNW0072 [Synechococcus sp. WH 8102]
Length=102
Score = 37.4 bits (85), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/64 (40%), Positives = 38/64 (60%), Gaps = 11/64 (17%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGL-------MPGR---VEAD-DGL 49
++TT+DL D +I A++ A Q+R+L +I++ R+GL MP VE D GL
Sbjct 1 MKTTIDLPDALIQQAKQRALQQKRTLKDLIADYIRQGLKGTSLSAMPAASSLVETDATGL 60
Query 50 PVIR 53
P+IR
Sbjct 61 PLIR 64
>gi|336115787|ref|YP_004570553.1| hypothetical protein MLP_01360 [Microlunatus phosphovorus NM-1]
gi|334683565|dbj|BAK33150.1| hypothetical protein MLP_01360 [Microlunatus phosphovorus NM-1]
Length=75
Score = 37.0 bits (84), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 32/77 (42%), Positives = 46/77 (60%), Gaps = 7/77 (9%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLM--PGRVEADDGLPVIRVPAGT 58
+RTTLDLD V++AAR A+++R SLG +SELA GL + G PV+ +G
Sbjct 1 MRTTLDLDPVVLSAARAKAAAERISLGKAVSELALSGLRAPSSQFTTASGFPVL---SGV 57
Query 59 P--PITPEMVRRALDED 73
P P+T E+V D++
Sbjct 58 PGRPVTDELVAAHRDDE 74
>gi|115974863|ref|XP_001182524.1| PREDICTED: similar to nephrin [Strongylocentrotus purpuratus]
Length=1500
Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 19/51 (38%), Positives = 29/51 (57%), Gaps = 4/51 (7%)
Query 22 QRRSLGSVISELARRGLMPGRVEADDGLPVIRVPAGTPPITPEMVRRALDE 72
Q+ LGS+ EL L+P R G PV + + TPP++P+ ++R DE
Sbjct 99 QKSDLGSLSGELLTGSLVPNRT----GAPVPMLGSQTPPLSPDQIKRCADE 145
>gi|330818819|ref|YP_004351036.1| hypothetical protein bgla_3p0110 [Burkholderia gladioli BSR3]
gi|327374361|gb|AEA65713.1| hypothetical protein bgla_3p0110 [Burkholderia gladioli BSR3]
Length=73
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/74 (44%), Positives = 46/74 (63%), Gaps = 5/74 (6%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEAD--DGLPVIRVPAGT 58
+RTTL++DDDV+A AR A + S+G +IS+LAR L P +GLPV+ P+
Sbjct 1 MRTTLEIDDDVLALARARADREHVSIGRIISQLARAALQPAAAAPTTRNGLPVL--PSAR 58
Query 59 PPITPEMVRRALDE 72
+TPE+V + DE
Sbjct 59 -TVTPELVNQLRDE 71
>gi|300780205|ref|ZP_07090061.1| toxin-antitoxin system [Corynebacterium genitalium ATCC 33030]
gi|300534315|gb|EFK55374.1| toxin-antitoxin system [Corynebacterium genitalium ATCC 33030]
Length=80
Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/51 (42%), Positives = 34/51 (67%), Gaps = 1/51 (1%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPV 51
+R T+ LD++V AAR +A+ + S+G +++LAR GL P R A D +P+
Sbjct 1 MRLTIRLDEEVYTAARAIAAEKGTSVGEAVNDLARAGL-PRRDSAVDYIPM 50
>gi|86738905|ref|YP_479305.1| hypothetical protein Francci3_0184 [Frankia sp. CcI3]
gi|86565767|gb|ABD09576.1| hypothetical protein Francci3_0184 [Frankia sp. CcI3]
Length=184
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/61 (41%), Positives = 33/61 (55%), Gaps = 2/61 (3%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPV-IRVPAGTP 59
+RTT+DL DD+ A +A R+L ++L RRGL GR LP + VP TP
Sbjct 1 MRTTIDLPDDLHRQAMSIARDTSRTLSETAADLMRRGLGQGR-PTHAYLPFDLTVPPDTP 59
Query 60 P 60
P
Sbjct 60 P 60
>gi|241948955|ref|XP_002417200.1| nuclear pore protein NUP170, putative; nucleoporin NUP170, putative
[Candida dubliniensis CD36]
gi|223640538|emb|CAX44792.1| nuclear pore protein NUP170, putative [Candida dubliniensis CD36]
Length=1426
Score = 35.4 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 23/60 (39%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query 4 TLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPVIRVP--AGTPPI 61
TL L DDV+A + L Q +S GS +L+RR + P +E+ + I VP A PP+
Sbjct 26 TLKLQDDVVADS--LQFHQDKSTGSSRGQLSRRFVQPAGLESKESNYKINVPDFANLPPL 83
>gi|340627619|ref|YP_004746071.1| hypothetical protein MCAN_26441 [Mycobacterium canettii CIPT
140010059]
gi|340005809|emb|CCC44975.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=95
Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/83 (34%), Positives = 42/83 (51%), Gaps = 17/83 (20%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGL----------MPGRVEADDGLP 50
++TTLDL D+++ A + A+ Q R + V++EL R GL P RV+ LP
Sbjct 1 MKTTLDLPDELMRAIKVRAAQQGRKMKDVVTELLRSGLSQTHSGAPIPTPRRVQ----LP 56
Query 51 VIRVPAGT---PPITPEMVRRAL 70
++ T +TPE V AL
Sbjct 57 LVHCSGATTREQEMTPERVAAAL 79
>gi|15843316|ref|NP_338353.1| CopG family DNA-binding protein [Mycobacterium tuberculosis CDC1551]
gi|121639612|ref|YP_979836.1| antitoxin [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|148663561|ref|YP_001285084.1| hypothetical protein MRA_3733 [Mycobacterium tuberculosis H37Ra]
48 more sequence titles
Length=74
Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/38 (43%), Positives = 26/38 (69%), Gaps = 0/38 (0%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGL 38
+RTT+DLDDD++ A + +R++LG + SEL + L
Sbjct 1 MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQAL 38
>gi|306778586|ref|ZP_07416923.1| antitoxin [Mycobacterium tuberculosis SUMu002]
gi|306786609|ref|ZP_07424931.1| antitoxin [Mycobacterium tuberculosis SUMu003]
gi|306790975|ref|ZP_07429297.1| antitoxin [Mycobacterium tuberculosis SUMu004]
13 more sequence titles
Length=74
Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/38 (43%), Positives = 26/38 (69%), Gaps = 0/38 (0%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGL 38
+RTT+DLDDD++ A + +R++LG + SEL + L
Sbjct 1 MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQAL 38
>gi|15827187|ref|NP_301450.1| hypothetical protein ML0525 [Mycobacterium leprae TN]
gi|221229665|ref|YP_002503081.1| hypothetical protein MLBr_00525 [Mycobacterium leprae Br4923]
gi|13092735|emb|CAC30033.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219932772|emb|CAR70618.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=58
Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/44 (48%), Positives = 25/44 (57%), Gaps = 0/44 (0%)
Query 16 RELASSQRRSLGSVISELARRGLMPGRVEADDGLPVIRVPAGTP 59
R +A S+G +IS LAR L PG V DGLPV+ VP P
Sbjct 15 RNIAQPGGHSVGVMISGLARSPLRPGGVVEVDGLPVLDVPQPAP 58
>gi|15840019|ref|NP_335056.1| hypothetical protein MT0645.2 [Mycobacterium tuberculosis CDC1551]
gi|121636536|ref|YP_976759.1| antitoxin [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|167969042|ref|ZP_02551319.1| hypothetical protein MtubH3_13852 [Mycobacterium tuberculosis
H37Ra]
56 more sequence titles
Length=75
Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 29/77 (38%), Positives = 40/77 (52%), Gaps = 8/77 (10%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEA-----DDGLPVIRVP 55
+RTT+DL D+ A +A R+L +++L RRGL R A GLP++ V
Sbjct 1 MRTTIDLPQDLHKQALAIARDTHRTLSETVADLMRRGLAANRPTALSSDPRTGLPLVSV- 59
Query 56 AGTPPITPEMVRRALDE 72
GT +T E VR DE
Sbjct 60 -GT-VVTSEDVRSLEDE 74
>gi|320109070|ref|YP_004184660.1| hypothetical protein AciPR4_3917 [Terriglobus saanensis SP1PR4]
gi|319927591|gb|ADV84666.1| hypothetical protein AciPR4_3917 [Terriglobus saanensis SP1PR4]
Length=86
Score = 34.3 bits (77), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/81 (35%), Positives = 43/81 (54%), Gaps = 10/81 (12%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPVIR------- 53
VR T++LD DV + A ++ +L + +SEL RR EA LP ++
Sbjct 6 VRLTVNLDADVYSFTSAYAGAKGITLSAALSELVRRAEQA--PEAGSDLPRLKTSQHGYL 63
Query 54 VPAGTP-PITPEMVRRALDED 73
V AGT +TPEMV+ A +++
Sbjct 64 VVAGTGDKLTPEMVKEASEDE 84
>gi|15840686|ref|NP_335723.1| hypothetical protein MT1279 [Mycobacterium tuberculosis CDC1551]
gi|13880873|gb|AAK45537.1| hypothetical protein MT1279 [Mycobacterium tuberculosis CDC1551]
Length=98
Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/40 (43%), Positives = 24/40 (60%), Gaps = 0/40 (0%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMP 40
+RTTL LDDDV+ + +RR + VI++ RR L P
Sbjct 13 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAP 52
>gi|88810688|ref|ZP_01125945.1| hypothetical protein NB231_16448 [Nitrococcus mobilis Nb-231]
gi|88792318|gb|EAR23428.1| hypothetical protein NB231_16448 [Nitrococcus mobilis Nb-231]
Length=92
Score = 33.9 bits (76), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/75 (31%), Positives = 40/75 (54%), Gaps = 4/75 (5%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMPGRVEADDGLPVIRVPAGT-- 58
+RTT+ L+ DV A +ELA +R S ++++ R+GL + +A P + P
Sbjct 5 MRTTVTLEPDVAAKLKELAHRRRASFKETLNDVLRKGLT-SQAKAGRSEPFVVKPHSGGF 63
Query 59 -PPITPEMVRRALDE 72
P I P+ + + LD+
Sbjct 64 RPGIDPDKLNQLLDQ 78
>gi|330808538|ref|YP_004353000.1| hypothetical protein PSEBR_a1783 [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327376646|gb|AEA67996.1| conserved hypothetical protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length=68
Score = 33.9 bits (76), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (63%), Gaps = 0/40 (0%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMP 40
R T+ LDD+VI AARE A + +VI+ L R+GL+
Sbjct 22 TRITIMLDDEVIKAARERAENVGTGYQAVINHLLRQGLLS 61
>gi|210631756|ref|ZP_03296998.1| hypothetical protein COLSTE_00883 [Collinsella stercoris DSM
13279]
gi|210159876|gb|EEA90847.1| hypothetical protein COLSTE_00883 [Collinsella stercoris DSM
13279]
Length=316
Score = 33.9 bits (76), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/66 (38%), Positives = 35/66 (54%), Gaps = 4/66 (6%)
Query 10 DVIAAARELASSQRRSLGSVISELAR---RGLMPGRVEADDGLPVIRVPAGTPPITPEMV 66
+V+ + R S++ + GSV++ AR G RV DDGL VI P TP MV
Sbjct 157 EVLESVRAYVPSKQGNRGSVVTLEARDLNMGYRKSRVH-DDGLIVISATFKLSPSTPAMV 215
Query 67 RRALDE 72
R A+D+
Sbjct 216 RAAMDD 221
>gi|254364141|ref|ZP_04980187.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|289554970|ref|ZP_06444180.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|289744986|ref|ZP_06504364.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|134149655|gb|EBA41700.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|289439602|gb|EFD22095.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|289685514|gb|EFD53002.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|328459460|gb|AEB04883.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
Length=90
Score = 33.9 bits (76), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/40 (43%), Positives = 24/40 (60%), Gaps = 0/40 (0%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMP 40
+RTTL LDDDV+ + +RR + VI++ RR L P
Sbjct 5 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAP 44
>gi|87123267|ref|ZP_01079118.1| hypothetical protein RS9917_05390 [Synechococcus sp. RS9917]
gi|86168987|gb|EAQ70243.1| hypothetical protein RS9917_05390 [Synechococcus sp. RS9917]
Length=102
Score = 33.9 bits (76), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/64 (38%), Positives = 37/64 (58%), Gaps = 11/64 (17%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLM-------PGR---VEAD-DGL 49
++TT+DL D +I A++ A Q+R+L +I++ R+GL P VE D GL
Sbjct 1 MKTTIDLPDALIQQAKQRALQQKRTLKDLIADYIRQGLKGPSCGTSPAASILVETDATGL 60
Query 50 PVIR 53
P+IR
Sbjct 61 PLIR 64
>gi|15608381|ref|NP_215757.1| hypothetical protein Rv1241 [Mycobacterium tuberculosis H37Rv]
gi|31792434|ref|NP_854927.1| hypothetical protein Mb1273 [Mycobacterium bovis AF2122/97]
gi|121637170|ref|YP_977393.1| hypothetical protein BCG_1301 [Mycobacterium bovis BCG str. Pasteur
1173P2]
68 more sequence titles
Length=86
Score = 33.9 bits (76), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/40 (43%), Positives = 24/40 (60%), Gaps = 0/40 (0%)
Query 1 VRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMP 40
+RTTL LDDDV+ + +RR + VI++ RR L P
Sbjct 1 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAP 40
Lambda K H
0.317 0.136 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131942442484
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40