BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2494
Length=141
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609631|ref|NP_217010.1| hypothetical protein Rv2494 [Mycoba... 277 4e-73
gi|289758626|ref|ZP_06518004.1| conserved hypothetical protein [... 276 9e-73
gi|15842022|ref|NP_337059.1| hypothetical protein MT2569 [Mycoba... 274 3e-72
gi|254232624|ref|ZP_04925951.1| conserved hypothetical protein [... 251 3e-65
gi|225874392|ref|YP_002755851.1| Mycobacterium tuberculosis PIN ... 111 3e-23
gi|15609667|ref|NP_217046.1| hypothetical protein Rv2530c [Mycob... 110 8e-23
gi|121595342|ref|YP_987238.1| PilT domain-containing protein [Ac... 106 1e-21
gi|262201135|ref|YP_003272343.1| PIN domain-containing protein f... 105 2e-21
gi|206601848|gb|EDZ38331.1| Hypothetical protein CGL2_11278040 [... 99.8 1e-19
gi|333815879|gb|AEG08546.1| PIN domain protein family protein [S... 98.2 3e-19
gi|87123102|ref|ZP_01078953.1| hypothetical protein RS9917_04565... 96.7 1e-18
gi|334319720|ref|YP_004556349.1| PIN domain-containing protein f... 95.9 2e-18
gi|241518561|ref|YP_002979189.1| PIN domain protein family prote... 95.1 3e-18
gi|330818818|ref|YP_004351035.1| PilT domain-containing protein ... 94.0 6e-18
gi|294339103|emb|CAZ87457.1| conserved hypothetical protein; put... 93.2 1e-17
gi|134291479|ref|YP_001115248.1| PilT domain-containing protein ... 92.0 2e-17
gi|320109069|ref|YP_004184659.1| PIN domain-containing protein f... 91.7 3e-17
gi|336115788|ref|YP_004570554.1| hypothetical protein MLP_01370 ... 90.5 7e-17
gi|114331350|ref|YP_747572.1| PilT domain-containing protein [Ni... 90.1 9e-17
gi|336120816|ref|YP_004575602.1| hypothetical protein MLP_51850 ... 90.1 9e-17
gi|24214369|ref|NP_711850.1| hypothetical protein LA_1669 [Lepto... 86.7 1e-15
gi|45657964|ref|YP_002050.1| hypothetical protein LIC12116 [Lept... 86.3 2e-15
gi|344199817|ref|YP_004784143.1| PIN domain-containing protein f... 86.3 2e-15
gi|289747139|ref|ZP_06506517.1| conserved hypothetical protein [... 84.7 5e-15
gi|15610456|ref|NP_217837.1| hypothetical protein Rv3320c [Mycob... 84.3 6e-15
gi|254420497|ref|ZP_05034221.1| Mycobacterium tuberculosis PIN d... 84.3 6e-15
gi|340628304|ref|YP_004746756.1| hypothetical protein MCAN_33461... 84.0 6e-15
gi|116624591|ref|YP_826747.1| PilT domain-containing protein [Ca... 84.0 7e-15
gi|340358885|ref|ZP_08681388.1| PIN family toxin-antitoxin syste... 83.6 9e-15
gi|240169388|ref|ZP_04748047.1| hypothetical protein MkanA1_0874... 83.2 1e-14
gi|326772971|ref|ZP_08232255.1| toxin-antitoxin system, toxin co... 80.9 6e-14
gi|15607757|ref|NP_215131.1| hypothetical protein Rv0617 [Mycoba... 80.5 7e-14
gi|113953974|ref|YP_729372.1| hypothetical protein sync_0135 [Sy... 80.1 1e-13
gi|269954934|ref|YP_003324723.1| PIN domain-containing protein f... 79.0 2e-13
gi|256826277|ref|YP_003150237.1| nucleic acid-binding protein [K... 74.3 5e-12
gi|304413692|ref|ZP_07395136.1| PIN domain-containing addiction ... 73.2 1e-11
gi|87123276|ref|ZP_01079127.1| hypothetical protein RS9917_05435... 70.5 7e-11
gi|336179654|ref|YP_004585029.1| PIN domain-containing protein f... 67.8 5e-10
gi|317967919|ref|ZP_07969309.1| hypothetical protein SCB02_00127... 67.4 6e-10
gi|124515583|gb|EAY57093.1| conserved hypothetical protein [Lept... 62.0 3e-08
gi|227876599|ref|ZP_03994709.1| conserved hypothetical protein [... 59.3 2e-07
gi|16264146|ref|NP_436938.1| hypothetical protein SM_b20412 [Sin... 57.4 7e-07
gi|324997204|ref|ZP_08118316.1| toxin [Pseudonocardia sp. P1] 55.8 2e-06
gi|225156269|ref|ZP_03724747.1| conserved hypothetical protein [... 50.4 8e-05
gi|289749117|ref|ZP_06508495.1| conserved hypothetical protein [... 50.4 9e-05
gi|160898241|ref|YP_001563823.1| PilT domain-containing protein ... 48.9 2e-04
gi|16264145|ref|NP_436937.1| hypothetical protein SM_b20411 [Sin... 47.0 8e-04
gi|218459869|ref|ZP_03499960.1| hypothetical protein RetlK5_1036... 47.0 8e-04
gi|190895067|ref|YP_001985360.1| hypothetical protein RHECIAT_PC... 46.2 0.001
gi|225155788|ref|ZP_03724275.1| hypothetical protein ObacDRAFT_8... 45.1 0.004
>gi|15609631|ref|NP_217010.1| hypothetical protein Rv2494 [Mycobacterium tuberculosis H37Rv]
gi|31793674|ref|NP_856167.1| hypothetical protein Mb2522 [Mycobacterium bovis AF2122/97]
gi|121638376|ref|YP_978600.1| hypothetical protein BCG_2514 [Mycobacterium bovis BCG str. Pasteur
1173P2]
68 more sequence titles
Length=141
Score = 277 bits (709), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 140/141 (99%), Positives = 141/141 (100%), Gaps = 0/141 (0%)
Query 1 VALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIG 60
+ALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIG
Sbjct 1 MALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIG 60
Query 61 IADARRVLVALRAVGGHRFLADDVSLVDDDVPLIVGYRQVTDAHLLTLARRRGVRLVTFD 120
IADARRVLVALRAVGGHRFLADDVSLVDDDVPLIVGYRQVTDAHLLTLARRRGVRLVTFD
Sbjct 61 IADARRVLVALRAVGGHRFLADDVSLVDDDVPLIVGYRQVTDAHLLTLARRRGVRLVTFD 120
Query 121 AGVFTLAQQRPKTPVELLTIL 141
AGVFTLAQQRPKTPVELLTIL
Sbjct 121 AGVFTLAQQRPKTPVELLTIL 141
>gi|289758626|ref|ZP_06518004.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|294994398|ref|ZP_06800089.1| toxin [Mycobacterium tuberculosis 210]
gi|289714190|gb|EFD78202.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|326904108|gb|EGE51041.1| toxin [Mycobacterium tuberculosis W-148]
gi|339295377|gb|AEJ47488.1| hypothetical protein CCDC5079_2298 [Mycobacterium tuberculosis
CCDC5079]
gi|339298997|gb|AEJ51107.1| hypothetical protein CCDC5180_2270 [Mycobacterium tuberculosis
CCDC5180]
Length=141
Score = 276 bits (705), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 139/141 (99%), Positives = 140/141 (99%), Gaps = 0/141 (0%)
Query 1 VALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIG 60
+ALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVR STNPKVLPSAIG
Sbjct 1 MALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRASTNPKVLPSAIG 60
Query 61 IADARRVLVALRAVGGHRFLADDVSLVDDDVPLIVGYRQVTDAHLLTLARRRGVRLVTFD 120
IADARRVLVALRAVGGHRFLADDVSLVDDDVPLIVGYRQVTDAHLLTLARRRGVRLVTFD
Sbjct 61 IADARRVLVALRAVGGHRFLADDVSLVDDDVPLIVGYRQVTDAHLLTLARRRGVRLVTFD 120
Query 121 AGVFTLAQQRPKTPVELLTIL 141
AGVFTLAQQRPKTPVELLTIL
Sbjct 121 AGVFTLAQQRPKTPVELLTIL 141
>gi|15842022|ref|NP_337059.1| hypothetical protein MT2569 [Mycobacterium tuberculosis CDC1551]
gi|254366798|ref|ZP_04982840.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|13882299|gb|AAK46873.1| hypothetical protein MT2569 [Mycobacterium tuberculosis CDC1551]
gi|134152308|gb|EBA44353.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|323718902|gb|EGB28056.1| toxin protein [Mycobacterium tuberculosis CDC1551A]
Length=141
Score = 274 bits (700), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 139/141 (99%), Positives = 140/141 (99%), Gaps = 0/141 (0%)
Query 1 VALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIG 60
+ALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIG
Sbjct 1 MALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIG 60
Query 61 IADARRVLVALRAVGGHRFLADDVSLVDDDVPLIVGYRQVTDAHLLTLARRRGVRLVTFD 120
IADAR VLVALRAVGGHRFLADDVSLVDDDVPLIVGYRQVTDAHLLTLARRRGVRLVTFD
Sbjct 61 IADARPVLVALRAVGGHRFLADDVSLVDDDVPLIVGYRQVTDAHLLTLARRRGVRLVTFD 120
Query 121 AGVFTLAQQRPKTPVELLTIL 141
AGVFTLAQQRPKTPVELLTIL
Sbjct 121 AGVFTLAQQRPKTPVELLTIL 141
>gi|254232624|ref|ZP_04925951.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|124601683|gb|EAY60693.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length=141
Score = 251 bits (640), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 138/141 (98%), Positives = 140/141 (99%), Gaps = 0/141 (0%)
Query 1 VALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIG 60
+AL+DVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIG
Sbjct 1 MALIDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIG 60
Query 61 IADARRVLVALRAVGGHRFLADDVSLVDDDVPLIVGYRQVTDAHLLTLARRRGVRLVTFD 120
IADAR VLVALRAVGGHRFLADDVSLVDDDVPLIVGYRQVTDAHLLTLARRRGVRLVTFD
Sbjct 61 IADARPVLVALRAVGGHRFLADDVSLVDDDVPLIVGYRQVTDAHLLTLARRRGVRLVTFD 120
Query 121 AGVFTLAQQRPKTPVELLTIL 141
AGVFTLAQQRPKTPVELLTIL
Sbjct 121 AGVFTLAQQRPKTPVELLTIL 141
>gi|225874392|ref|YP_002755851.1| Mycobacterium tuberculosis PIN domain protein [Acidobacterium
capsulatum ATCC 51196]
gi|225792658|gb|ACO32748.1| Mycobacterium tuberculosis PIN domain protein [Acidobacterium
capsulatum ATCC 51196]
Length=146
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/130 (46%), Positives = 81/130 (63%), Gaps = 5/130 (3%)
Query 1 VALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIG 60
V LLDVN LVA+ W SH+HH R ++WF+ ++ GWATCPLT+ GFVR+ +NP SA+
Sbjct 3 VTLLDVNVLVAMFWPSHVHHVRAQQWFSEHSRHGWATCPLTQTGFVRIVSNPAFSKSAVT 62
Query 61 IADARRVLVALRAVGGHRFLADDVSLVDDDVPL----IVGYRQVTDAHLLTLARRRGVRL 116
DA VL H F AD V V++ ++G++QVTDA+L+ LA RL
Sbjct 63 ARDAIHVLQENLKHRSHVFWADSVG-VNEAASFTHDRLIGHKQVTDAYLIGLAHHHQGRL 121
Query 117 VTFDAGVFTL 126
+TFD G+ +L
Sbjct 122 LTFDRGLGSL 131
>gi|15609667|ref|NP_217046.1| hypothetical protein Rv2530c [Mycobacterium tuberculosis H37Rv]
gi|15842064|ref|NP_337101.1| hypothetical protein MT2605 [Mycobacterium tuberculosis CDC1551]
gi|31793711|ref|NP_856204.1| hypothetical protein Mb2559c [Mycobacterium bovis AF2122/97]
81 more sequence titles
Length=139
Score = 110 bits (274), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/121 (48%), Positives = 78/121 (65%), Gaps = 3/121 (2%)
Query 2 ALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGI 61
ALLDVN L+AL W +H+HHA + WFT ++ GWAT P+TEAG+VR+S+N V+ +
Sbjct 3 ALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVSTTP 62
Query 62 ADARRVLVALRAVGGHRFLADDVSLV---DDDVPLIVGYRQVTDAHLLTLARRRGVRLVT 118
A A L A+ ++ GH F DDV L+ D + +R+VTD HL+ LA R G RLVT
Sbjct 63 AIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRLVT 122
Query 119 F 119
F
Sbjct 123 F 123
>gi|121595342|ref|YP_987238.1| PilT domain-containing protein [Acidovorax sp. JS42]
gi|120607422|gb|ABM43162.1| PIN domain family protein [Acidovorax sp. JS42]
Length=142
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/125 (48%), Positives = 77/125 (62%), Gaps = 4/125 (3%)
Query 2 ALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGI 61
ALLDVN L+AL +HIHH R +W + GWA+CPLT+ G +R+ P P A+ +
Sbjct 3 ALLDVNVLIALLDAAHIHHQRASQWLEQSLHHGWASCPLTQNGCLRIMAQPAY-PQALPL 61
Query 62 ADARRVLVALRAVGGHRFLADDVSLVDDDV---PLIVGYRQVTDAHLLTLARRRGVRLVT 118
A + L A H F+ADD SL+D D P ++G+RQVTDA+LL LA R G R V+
Sbjct 62 AAVAQRLGQAAATPAHLFIADDYSLLDADSLHWPQLLGHRQVTDAYLLGLAVRHGCRFVS 121
Query 119 FDAGV 123
FDA V
Sbjct 122 FDARV 126
>gi|262201135|ref|YP_003272343.1| PIN domain-containing protein family protein [Gordonia bronchialis
DSM 43247]
gi|262084482|gb|ACY20450.1| PIN domain protein family protein [Gordonia bronchialis DSM 43247]
Length=144
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/123 (49%), Positives = 75/123 (61%), Gaps = 4/123 (3%)
Query 3 LLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGIA 62
LLD+N LVAL+WD H+HH E F W+TCP+TEAG VRV + + A
Sbjct 7 LLDINVLVALSWDQHVHHGVAHERFAQLTE--WSTCPVTEAGLVRVLMTESAVGRVVTGA 64
Query 63 DARRVLVALRAVGGHRFLADDVSLVDD--DVPLIVGYRQVTDAHLLTLARRRGVRLVTFD 120
+A L ALR V G FL DD SL D D+ +++G RQVTD HL+ LA R G +L TFD
Sbjct 65 EALGQLAALRTVTGWGFLHDDASLADSVIDLRVLMGRRQVTDLHLVNLAARNGRKLATFD 124
Query 121 AGV 123
AG+
Sbjct 125 AGL 127
>gi|206601848|gb|EDZ38331.1| Hypothetical protein CGL2_11278040 [Leptospirillum sp. Group
II '5-way CG']
Length=142
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/131 (43%), Positives = 76/131 (59%), Gaps = 4/131 (3%)
Query 2 ALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGI 61
+LLD+N L+AL H+ H REWF+ +AT GWA+CPLT+ G +R+ ++P P+ I I
Sbjct 3 SLLDINVLIALLDSDHVSHHTAREWFSLHATDGWASCPLTQNGCMRIMSHPN-YPNPISI 61
Query 62 ADARRVLVALRAVGGHRFLADDVSLVD---DDVPLIVGYRQVTDAHLLTLARRRGVRLVT 118
+ R L + H+F DDVS +D D I G Q+TD +LL LA R R VT
Sbjct 62 SRIRERLSEAASSSLHQFWPDDVSFLDAGVADTARIHGPHQITDLYLLALAIRHKGRFVT 121
Query 119 FDAGVFTLAQQ 129
FD + T A Q
Sbjct 122 FDGSIVTSAVQ 132
>gi|333815879|gb|AEG08546.1| PIN domain protein family protein [Sinorhizobium meliloti BL225C]
Length=147
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/121 (47%), Positives = 71/121 (59%), Gaps = 3/121 (2%)
Query 3 LLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGIA 62
LLDVN L+AL SHI H EWF + WATCP+TE G +R+ NP+ S
Sbjct 4 LLDVNVLIALIDPSHIGHDDAHEWFASIGQTAWATCPITENGVIRIVGNPEYPNSPGSPL 63
Query 63 DARRVLVALRAVGGHRFLADDVSLV--DDDVP-LIVGYRQVTDAHLLTLARRRGVRLVTF 119
A ++ LR++ GH F DDVSLV D +P I+ QVTD +LL LA+ RG +L TF
Sbjct 64 PAMEIVAKLRSLPGHVFWPDDVSLVGSSDIIPSKILTSGQVTDTYLLALAKARGGKLATF 123
Query 120 D 120
D
Sbjct 124 D 124
>gi|87123102|ref|ZP_01078953.1| hypothetical protein RS9917_04565 [Synechococcus sp. RS9917]
gi|86168822|gb|EAQ70078.1| hypothetical protein RS9917_04565 [Synechococcus sp. RS9917]
Length=149
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/130 (41%), Positives = 75/130 (58%), Gaps = 3/130 (2%)
Query 1 VALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIG 60
+ALLDVN L+AL H+HH WF ANA+ GWATCPLT+ +R+ +NP+ S G
Sbjct 5 IALLDVNVLIALLDPQHVHHEPAHRWFQANASYGWATCPLTQNALLRILSNPRYPNSPGG 64
Query 61 IADARRVLVALRAVGGHRFLADDVSLVDD---DVPLIVGYRQVTDAHLLTLARRRGVRLV 117
A +L + + GH F D +S D L++ + Q+TD +LL LA +G L+
Sbjct 65 PASVMPLLQGMLSHPGHLFWPDLLSWSTDGELQAELLLHHGQITDTYLLALAVHQGGCLM 124
Query 118 TFDAGVFTLA 127
+FDA + T A
Sbjct 125 SFDARLSTCA 134
>gi|334319720|ref|YP_004556349.1| PIN domain-containing protein family protein [Sinorhizobium meliloti
AK83]
gi|334097459|gb|AEG55469.1| PIN domain protein family protein [Sinorhizobium meliloti AK83]
Length=147
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/121 (46%), Positives = 70/121 (58%), Gaps = 3/121 (2%)
Query 3 LLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGIA 62
LLDVN L+AL SHI H EWF + WATCP+TE G +R+ NP+ S
Sbjct 4 LLDVNVLIALIDPSHIGHDDAHEWFASIGQTTWATCPITENGVIRIVGNPEYPNSPGSPL 63
Query 63 DARRVLVALRAVGGHRFLADDVSLV--DDDVP-LIVGYRQVTDAHLLTLARRRGVRLVTF 119
++ LR++ GH F DDVSLV D +P I+ QVTD +LL LA+ RG +L TF
Sbjct 64 PVMEIVAKLRSLPGHVFWPDDVSLVGSSDIIPSKILTSGQVTDTYLLALAKARGGKLATF 123
Query 120 D 120
D
Sbjct 124 D 124
>gi|241518561|ref|YP_002979189.1| PIN domain protein family protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240862974|gb|ACS60638.1| PIN domain protein family protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length=147
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/140 (42%), Positives = 77/140 (55%), Gaps = 3/140 (2%)
Query 3 LLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGIA 62
LLDVN L+AL H+ H EWF A WATCP+TE G +R+ NP+ S +
Sbjct 4 LLDVNVLIALIDPGHVAHDDAHEWFAAIGQSAWATCPITENGVIRIVGNPQYPNSPGSPS 63
Query 63 DARRVLVALRAVGGHRFLADDVSLV--DDDVPL-IVGYRQVTDAHLLTLARRRGVRLVTF 119
++ LR++ GH F DDVSLV D P I+ QVTD +LL LA+ RG +L TF
Sbjct 64 LVMEIVRKLRSLPGHSFWPDDVSLVGSGDIAPAKILTSGQVTDTYLLALAKARGGQLATF 123
Query 120 DAGVFTLAQQRPKTPVELLT 139
D + A R + + L+T
Sbjct 124 DRKLSAAAVTRGNSALHLIT 143
>gi|330818818|ref|YP_004351035.1| PilT domain-containing protein [Burkholderia gladioli BSR3]
gi|327374360|gb|AEA65712.1| PilT domain-containing protein [Burkholderia gladioli BSR3]
Length=151
Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/122 (48%), Positives = 72/122 (60%), Gaps = 5/122 (4%)
Query 3 LLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGIA 62
LLDVN L+AL H+ H EWF + A WATCPLTE G +R+ NP+ P+ +G
Sbjct 12 LLDVNVLIALLDAGHVQHEAAHEWFGSAAHAAWATCPLTENGVLRIIGNPR-YPNTLGTP 70
Query 63 DARRVLVA-LRAVGGHRFLADDVSLVDD---DVPLIVGYRQVTDAHLLTLARRRGVRLVT 118
A LV LRA GH F DD+SL++ DV I+ QVTD +LL LAR G +L T
Sbjct 71 AAVAPLVTQLRAHPGHTFWWDDLSLLNPEQVDVSRILATDQVTDTYLLALARVHGGKLAT 130
Query 119 FD 120
FD
Sbjct 131 FD 132
>gi|294339103|emb|CAZ87457.1| conserved hypothetical protein; putative PIN domain [Thiomonas
sp. 3As]
Length=143
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/121 (41%), Positives = 72/121 (60%), Gaps = 3/121 (2%)
Query 3 LLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGIA 62
LLDVN L+AL +H+ H WF + WATCPLTE G +R+ +P+ + A
Sbjct 5 LLDVNVLIALIDPAHVQHDAAHHWFAETGSASWATCPLTENGLLRIVGHPRYPNTPGTPA 64
Query 63 DARRVLVALRAVGGHRFLADDVSLVDDDVPL---IVGYRQVTDAHLLTLARRRGVRLVTF 119
VL ALRA+ GH F DD+SL++ ++ L ++ + Q+TD++LL LAR +L +F
Sbjct 65 TVAVVLQALRALPGHHFWPDDISLLNPELILTDRLLSHTQITDSYLLALARHHSGKLASF 124
Query 120 D 120
D
Sbjct 125 D 125
>gi|134291479|ref|YP_001115248.1| PilT domain-containing protein [Burkholderia vietnamiensis G4]
gi|134134668|gb|ABO58993.1| PIN domain family protein [Burkholderia vietnamiensis G4]
Length=144
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/121 (43%), Positives = 69/121 (58%), Gaps = 3/121 (2%)
Query 3 LLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGIA 62
LLDVN L+AL +H+ H WF WATCPLTE G +R+ NPK + + A
Sbjct 5 LLDVNVLIALLDPAHVQHEPAHAWFGRVGHSAWATCPLTENGVLRIIGNPKYPNTMVSPA 64
Query 63 DARRVLVALRAVGGHRFLADDVSLVDD---DVPLIVGYRQVTDAHLLTLARRRGVRLVTF 119
++V LR+ GH F +DDVSL+D+ D ++ Q+TD +LL LAR +L TF
Sbjct 65 SVAPLVVQLRSHAGHTFWSDDVSLLDEKHVDATRLLSSAQLTDTYLLALARAHKGKLATF 124
Query 120 D 120
D
Sbjct 125 D 125
>gi|320109069|ref|YP_004184659.1| PIN domain-containing protein family protein [Terriglobus saanensis
SP1PR4]
gi|319927590|gb|ADV84665.1| PIN domain protein family protein [Terriglobus saanensis SP1PR4]
Length=147
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/139 (43%), Positives = 75/139 (54%), Gaps = 6/139 (4%)
Query 3 LLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGIA 62
LLDVN VAL + H HH + WF + L WA CP TEAGF+R +T P+ P I +
Sbjct 9 LLDVNVFVALLSEDHTHHQLVTAWFNTPSLL-WAICPFTEAGFLRNATAPR--PGQITMT 65
Query 63 DARRVLVALRAVGGHRFL---ADDVSLVDDDVPLIVGYRQVTDAHLLTLARRRGVRLVTF 119
+A VL + V G+ +L AD SL + G +QVTDA+LL LA R + LVT
Sbjct 66 EATAVLARMAQVPGYHYLPITADWRSLCSPFSTRLYGTKQVTDAYLLGLAVREDLVLVTM 125
Query 120 DAGVFTLAQQRPKTPVELL 138
D G+ LA V LL
Sbjct 126 DKGILHLAGNEYSAHVLLL 144
>gi|336115788|ref|YP_004570554.1| hypothetical protein MLP_01370 [Microlunatus phosphovorus NM-1]
gi|334683566|dbj|BAK33151.1| hypothetical protein MLP_01370 [Microlunatus phosphovorus NM-1]
Length=139
Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/123 (44%), Positives = 71/123 (58%), Gaps = 4/123 (3%)
Query 3 LLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGIA 62
LLDVN L+AL+WD H+HH + F T W TCP TEAG VR+ +V+ + +
Sbjct 2 LLDVNVLLALSWDQHVHHEIAHQRFAELDT--WNTCPTTEAGLVRLLLTEQVVGRKVIGS 59
Query 63 DARRVLVALRAVGGHRFLADDVSLVDD--DVPLIVGYRQVTDAHLLTLARRRGVRLVTFD 120
+A L A+R V G FL D SL + D +++G RQVTD L+ LA +L TFD
Sbjct 60 EALGQLAAMRGVSGWGFLPDSGSLAEPVIDTRVLMGRRQVTDLQLVNLAASNNTKLATFD 119
Query 121 AGV 123
AG+
Sbjct 120 AGL 122
>gi|114331350|ref|YP_747572.1| PilT domain-containing protein [Nitrosomonas eutropha C91]
gi|114308364|gb|ABI59607.1| PIN domain family protein [Nitrosomonas eutropha C91]
Length=142
Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/123 (41%), Positives = 70/123 (57%), Gaps = 4/123 (3%)
Query 2 ALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGI 61
ALLDVN L+AL H+HH R +W GWA+CPLT+ G +R+ T P P A+ +
Sbjct 3 ALLDVNVLIALLDAGHVHHVRASQWLEQEIIHGWASCPLTQNGCLRIMTQP-AYPEALSL 61
Query 62 ADARRVLVALRAVGGHRFLADDVSLVDDDV---PLIVGYRQVTDAHLLTLARRRGVRLVT 118
A L A H F+ADD SL+D + ++G+ Q+ D++LL LA R R V+
Sbjct 62 AAVASRLAQAIAHPTHAFVADDYSLLDAEQVNWQQMLGHWQIIDSYLLGLAVRHHCRFVS 121
Query 119 FDA 121
FD+
Sbjct 122 FDS 124
>gi|336120816|ref|YP_004575602.1| hypothetical protein MLP_51850 [Microlunatus phosphovorus NM-1]
gi|334688614|dbj|BAK38199.1| hypothetical protein MLP_51850 [Microlunatus phosphovorus NM-1]
Length=148
Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/120 (45%), Positives = 73/120 (61%), Gaps = 4/120 (3%)
Query 3 LLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGIA 62
L DVN LVAL +H+HH + + WFT+ +AT P+TE+GF+R++ NP V +
Sbjct 13 LPDVNLLVALLHPAHVHHLQAQAWFTS--VERFATTPITESGFIRMALNPAVAGQVTSLD 70
Query 63 DARRVLVALRAVGGHRFLADDVSLVDDDVPLI--VGYRQVTDAHLLTLARRRGVRLVTFD 120
DA L ++RA ++ADD SL + L+ VG+RQVTD HL+ LA RLVTFD
Sbjct 71 DAMSSLNSVRADKRVEYVADDTSLALPTIDLVGLVGFRQVTDFHLVNLAACHSARLVTFD 130
>gi|24214369|ref|NP_711850.1| hypothetical protein LA_1669 [Leptospira interrogans serovar
Lai str. 56601]
gi|24195304|gb|AAN48868.1| hypothetical protein LA_1669 [Leptospira interrogans serovar
Lai str. 56601]
Length=144
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/139 (34%), Positives = 76/139 (55%), Gaps = 3/139 (2%)
Query 3 LLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGIA 62
LLDVN L++L +H+ H + +WF A GWATCP+T+ VR+ ++ + G+
Sbjct 4 LLDVNVLISLCDSNHVFHEKAWKWFDRKAKNGWATCPITQNALVRIMSHSSYPGNPGGVE 63
Query 63 DARRVLVALRAVGGHRFLADDVSLVDDDVPL---IVGYRQVTDAHLLTLARRRGVRLVTF 119
+L +L V GH+F+ D++S+ L V +Q+TD +LL L+ V+ TF
Sbjct 64 VVSAILHSLLKVKGHQFIPDNISINSSLFYLNIVSVSSKQITDVYLLALSVHHKVKFATF 123
Query 120 DAGVFTLAQQRPKTPVELL 138
D+ + + R K +EL+
Sbjct 124 DSKIPYDSVDRGKEHLELI 142
>gi|45657964|ref|YP_002050.1| hypothetical protein LIC12116 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|45601205|gb|AAS70687.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length=144
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/139 (34%), Positives = 76/139 (55%), Gaps = 3/139 (2%)
Query 3 LLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGIA 62
LLDVN L++L +H+ H + +WF A GWATCP+T+ VR+ ++ + G+
Sbjct 4 LLDVNVLISLCDSNHVFHEKAWKWFDRKARNGWATCPITQNALVRIMSHSSYPGNPGGVE 63
Query 63 DARRVLVALRAVGGHRFLADDVSLVDDDVPL---IVGYRQVTDAHLLTLARRRGVRLVTF 119
+L +L V GH+F+ D++S+ L V +Q+TD +LL L+ V+ TF
Sbjct 64 VVSAILHSLLKVKGHQFIPDNISINSSLFYLNIVSVSSKQITDVYLLALSVHHKVKFATF 123
Query 120 DAGVFTLAQQRPKTPVELL 138
D+ + + R K +EL+
Sbjct 124 DSKIPYDSVDRGKEHLELI 142
>gi|344199817|ref|YP_004784143.1| PIN domain-containing protein family protein [Acidithiobacillus
ferrivorans SS3]
gi|343775261|gb|AEM47817.1| PIN domain protein family protein [Acidithiobacillus ferrivorans
SS3]
Length=142
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/129 (42%), Positives = 73/129 (57%), Gaps = 5/129 (3%)
Query 3 LLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGIA 62
LLDVN L+AL H+ H EWF A+ WATCPLTE G +R+ +P+ P++ G
Sbjct 4 LLDVNVLIALIDPMHVQHDMAHEWFAAHGQPAWATCPLTENGVLRIVGHPR-YPNSPGTP 62
Query 63 DARRVLV-ALRAVGGHRFLADDVSLVD---DDVPLIVGYRQVTDAHLLTLARRRGVRLVT 118
A L+ LRA GH F DD+SL+D D ++ Q+TD++LL LA +L T
Sbjct 63 AAVAPLIQGLRASPGHVFWPDDISLLDVDHIDASRLLTSGQITDSYLLALACAHEGQLAT 122
Query 119 FDAGVFTLA 127
FD + T A
Sbjct 123 FDHRLVTNA 131
>gi|289747139|ref|ZP_06506517.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289687667|gb|EFD55155.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=202
Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/125 (42%), Positives = 68/125 (55%), Gaps = 4/125 (3%)
Query 2 ALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGI 61
ALLDVN L+AL H+ H R R W T GWA+C +T+ GFVRV + P+ PS I +
Sbjct 3 ALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPR-YPSPISV 61
Query 62 ADARRVLVALRAVGGHRFLADDVSLVDD---DVPLIVGYRQVTDAHLLTLARRRGVRLVT 118
A A +L H F + VS++D D + +QVTDA+LL LA R VT
Sbjct 62 AHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVT 121
Query 119 FDAGV 123
FD +
Sbjct 122 FDQSI 126
>gi|15610456|ref|NP_217837.1| hypothetical protein Rv3320c [Mycobacterium tuberculosis H37Rv]
gi|15842912|ref|NP_337949.1| hypothetical protein MT3421 [Mycobacterium tuberculosis CDC1551]
gi|31794501|ref|NP_856994.1| hypothetical protein Mb3349c [Mycobacterium bovis AF2122/97]
77 more sequence titles
Length=142
Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/125 (42%), Positives = 68/125 (55%), Gaps = 4/125 (3%)
Query 2 ALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGI 61
ALLDVN L+AL H+ H R R W T GWA+C +T+ GFVRV + P+ PS I +
Sbjct 3 ALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPR-YPSPISV 61
Query 62 ADARRVLVALRAVGGHRFLADDVSLVDD---DVPLIVGYRQVTDAHLLTLARRRGVRLVT 118
A A +L H F + VS++D D + +QVTDA+LL LA R VT
Sbjct 62 AHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVT 121
Query 119 FDAGV 123
FD +
Sbjct 122 FDQSI 126
>gi|254420497|ref|ZP_05034221.1| Mycobacterium tuberculosis PIN domain family [Brevundimonas sp.
BAL3]
gi|196186674|gb|EDX81650.1| Mycobacterium tuberculosis PIN domain family [Brevundimonas sp.
BAL3]
Length=145
Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/121 (42%), Positives = 63/121 (53%), Gaps = 3/121 (2%)
Query 3 LLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGIA 62
LLDVN L+AL H+ H WF A WATCP+TE G VR+ N + +
Sbjct 4 LLDVNVLIALVDPRHVFHDTANGWFQREAAGSWATCPITENGLVRIVGNSRYRNPVGPPS 63
Query 63 DARRVLVALRAVGGHRFLADDVSLVDD---DVPLIVGYRQVTDAHLLTLARRRGVRLVTF 119
+ R+L LR + GH F D +SL DD D + Q+TDA+LL LA G RL T
Sbjct 64 EIVRILELLRDMAGHVFWPDAISLADDRLFDPSALTTPEQITDAYLLALAVSNGGRLATL 123
Query 120 D 120
D
Sbjct 124 D 124
>gi|340628304|ref|YP_004746756.1| hypothetical protein MCAN_33461 [Mycobacterium canettii CIPT
140010059]
gi|340006494|emb|CCC45677.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=142
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/125 (42%), Positives = 68/125 (55%), Gaps = 4/125 (3%)
Query 2 ALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGI 61
ALLDVN L+AL H+ H R R W T GWA+C +T+ GFVRV + P+ PS I +
Sbjct 3 ALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPR-YPSPISV 61
Query 62 ADARRVLVALRAVGGHRFLADDVSLVDDDV---PLIVGYRQVTDAHLLTLARRRGVRLVT 118
A A +L H F + VS++D V + +QVTDA+LL LA R VT
Sbjct 62 AHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVT 121
Query 119 FDAGV 123
FD +
Sbjct 122 FDQAI 126
>gi|116624591|ref|YP_826747.1| PilT domain-containing protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116227753|gb|ABJ86462.1| PIN domain family protein [Candidatus Solibacter usitatus Ellin6076]
Length=147
Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/126 (40%), Positives = 68/126 (54%), Gaps = 3/126 (2%)
Query 1 VALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIG 60
+ALLDVN L+AL +HI H WF N GWATCP+T G VR+ ++P
Sbjct 3 IALLDVNVLIALFDPAHIDHVEAHRWFGLNRKRGWATCPITINGCVRILSSPGYPGINAS 62
Query 61 IADARRVLVALRAVGGHRFLADDVSLVDDDV---PLIVGYRQVTDAHLLTLARRRGVRLV 117
A+ + A A H F D VSL+D+ + +I G++ +TD +LL LA R RL
Sbjct 63 PAEITARMQASFANVDHHFWPDSVSLLDEALFRPSMITGHKNITDVYLLGLAVRNHGRLA 122
Query 118 TFDAGV 123
TFD +
Sbjct 123 TFDQSI 128
>gi|340358885|ref|ZP_08681388.1| PIN family toxin-antitoxin system [Actinomyces sp. oral taxon
448 str. F0400]
gi|339885631|gb|EGQ75340.1| PIN family toxin-antitoxin system [Actinomyces sp. oral taxon
448 str. F0400]
Length=148
Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/123 (40%), Positives = 66/123 (54%), Gaps = 4/123 (3%)
Query 3 LLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGIA 62
LLDVN ++AL+ +H HH WF WATCP+TE+ + R+ N V +G++
Sbjct 10 LLDVNVMLALSLANHAHHRVATSWFEDVG--AWATCPITESAYCRLLLNSHVTGFELGVS 67
Query 63 DARRVLVALRAVGGHRFLADDVSLVDD--DVPLIVGYRQVTDAHLLTLARRRGVRLVTFD 120
+ L +V GH + D SL DV +VG RQ+TD HL+ LA R G L T D
Sbjct 68 EVFDALRTFCSVSGHELIEDSASLTAPAIDVSGLVGRRQITDFHLVDLAARSGALLATLD 127
Query 121 AGV 123
A +
Sbjct 128 ARI 130
>gi|240169388|ref|ZP_04748047.1| hypothetical protein MkanA1_08748 [Mycobacterium kansasii ATCC
12478]
Length=133
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/126 (41%), Positives = 70/126 (56%), Gaps = 6/126 (4%)
Query 1 VALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIG 60
+ALLD N L+AL H+HH W +A G+ATCP+T+ VR P+A+
Sbjct 2 IALLDSNVLIALVVAEHVHHDVAAAWLSARDN-GFATCPITQGSLVRFLMRTG-QPAAV- 58
Query 61 IADARRVLVALRAVGGHRFLADDVSLVDDDVPLIVGYRQVTDAHLLTLARRRGVRLVTFD 120
AR V+ A+ H F D VS D ++ +VG+RQVTDA+L LAR R +L T D
Sbjct 59 ---AREVVGAVETAKRHEFWPDSVSFADVEIGGVVGHRQVTDAYLAQLARSRNGQLATLD 115
Query 121 AGVFTL 126
+G+ L
Sbjct 116 SGLAHL 121
>gi|326772971|ref|ZP_08232255.1| toxin-antitoxin system, toxin component, PIN family [Actinomyces
viscosus C505]
gi|326637603|gb|EGE38505.1| toxin-antitoxin system, toxin component, PIN family [Actinomyces
viscosus C505]
Length=146
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 72/140 (52%), Gaps = 4/140 (2%)
Query 3 LLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGIA 62
LLDVN LVAL+ +H HH + WF + WATC +T+A ++R+ NP+V I A
Sbjct 9 LLDVNVLVALSLPNHAHHEVVSAWF--DGVDQWATCSITQAAYLRLLMNPRVTGFEIAAA 66
Query 63 DARRVLVALRAVGGHRFLADDVSLVDDDVPL--IVGYRQVTDAHLLTLARRRGVRLVTFD 120
D L L ++ H FL DD + + + G +QVTD HL+ LA R L T D
Sbjct 67 DVLSGLGGLTSLDDHVFLVDDAPPAEPSISFSRLKGPKQVTDLHLVDLAARHNAVLATMD 126
Query 121 AGVFTLAQQRPKTPVELLTI 140
+ + + +EL+ +
Sbjct 127 GRMAQALMSQDRRHIELIPL 146
>gi|15607757|ref|NP_215131.1| hypothetical protein Rv0617 [Mycobacterium tuberculosis H37Rv]
gi|15840020|ref|NP_335057.1| hypothetical protein MT0646 [Mycobacterium tuberculosis CDC1551]
gi|31791800|ref|NP_854293.1| hypothetical protein Mb0634 [Mycobacterium bovis AF2122/97]
79 more sequence titles
Length=133
Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/124 (40%), Positives = 69/124 (56%), Gaps = 6/124 (4%)
Query 3 LLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGIA 62
LLD N L+AL H+HH +W A+ T G+ATCP+T+ VR ++ S A
Sbjct 4 LLDANVLIALVVAEHVHHDAAADWLMASDT-GFATCPMTQGSLVRF-----LVRSGQSAA 57
Query 63 DARRVLVALRAVGGHRFLADDVSLVDDDVPLIVGYRQVTDAHLLTLARRRGVRLVTFDAG 122
AR V+ A++ H F D +S +V +VG+RQVTDA+L LAR +L T D+G
Sbjct 58 AARDVVSAVQCTSRHEFWPDALSFAGVEVAGVVGHRQVTDAYLAQLARSHDGQLATLDSG 117
Query 123 VFTL 126
+ L
Sbjct 118 LAHL 121
>gi|113953974|ref|YP_729372.1| hypothetical protein sync_0135 [Synechococcus sp. CC9311]
gi|113881325|gb|ABI46283.1| Mycobacterium tuberculosis PIN domain family subfamily [Synechococcus
sp. CC9311]
Length=148
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/123 (40%), Positives = 64/123 (53%), Gaps = 3/123 (2%)
Query 1 VALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIG 60
+ALLDVN L+AL H+HH WF A+ GWATCPLT+ +R+ NP+ S G
Sbjct 5 IALLDVNVLIALIDPQHVHHEPSHRWFQAHGGDGWATCPLTQNALLRILGNPRYPNSPGG 64
Query 61 IADARRVLVALRAVGGHRFLADDVSLVDDDV---PLIVGYRQVTDAHLLTLARRRGVRLV 117
A L L A H F D +S V ++ + Q+TD +LL LA RLV
Sbjct 65 PAVVMSFLQELLAHPAHVFWPDALSWQATGVFEAEALLHHGQITDTYLLGLAVHHQGRLV 124
Query 118 TFD 120
+FD
Sbjct 125 SFD 127
>gi|269954934|ref|YP_003324723.1| PIN domain-containing protein family protein [Xylanimonas cellulosilytica
DSM 15894]
gi|269303615|gb|ACZ29165.1| PIN domain protein family protein [Xylanimonas cellulosilytica
DSM 15894]
Length=141
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/141 (40%), Positives = 75/141 (54%), Gaps = 10/141 (7%)
Query 3 LLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGIA 62
L DVN L+AL ++ H+HH W +AT LTEAGFVRVS NP ++
Sbjct 5 LPDVNVLIALHFEDHVHHVPAMSWLRKGGQ--FATTALTEAGFVRVSMNPAIVGEPFSGV 62
Query 63 DARRVLVALRAVGGH---RFLADDVSLVDDDVP--LIVGYRQVTDAHLLTLARRRGVRLV 117
+A L ALR + GH F ADD SL ++ G++Q TD HLL LA R LV
Sbjct 63 EA---LEALRRLRGHTRATFWADDTSLATSPFADRVLSGHKQTTDLHLLNLAASRDGVLV 119
Query 118 TFDAGVFTLAQQRPKTPVELL 138
TFD+ + +Q + +++L
Sbjct 120 TFDSKLGAPLRQAERRHLDVL 140
>gi|256826277|ref|YP_003150237.1| nucleic acid-binding protein [Kytococcus sedentarius DSM 20547]
gi|256689670|gb|ACV07472.1| predicted nucleic acid-binding protein, contains PIN domain [Kytococcus
sedentarius DSM 20547]
Length=147
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/126 (39%), Positives = 65/126 (52%), Gaps = 3/126 (2%)
Query 2 ALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGI 61
ALLDVN L+AL H H W + GWATC T+ GF+RV + P PS I +
Sbjct 9 ALLDVNTLIALLDIDHRDHEAAHRWAEERLSNGWATCATTQMGFLRVISQPG-YPSPITV 67
Query 62 ADARRVLVALRAVGGHRFLADDVSLVDDDVPL--IVGYRQVTDAHLLTLARRRGVRLVTF 119
+A R+L H + + + V L I G+RQ+TDA+LL LA + LVTF
Sbjct 68 DEAGRLLRRATDHPSHEYWSSEPQPCAGSVSLDVITGHRQITDAYLLALAVHQNGCLVTF 127
Query 120 DAGVFT 125
D + T
Sbjct 128 DRRITT 133
>gi|304413692|ref|ZP_07395136.1| PIN domain-containing addiction module [Candidatus Regiella insecticola
LSR1]
gi|304283783|gb|EFL92177.1| PIN domain-containing addiction module [Candidatus Regiella insecticola
LSR1]
Length=147
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/123 (37%), Positives = 65/123 (53%), Gaps = 4/123 (3%)
Query 1 VALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIG 60
+ LLDVN L+AL +HI H WF WATCPLT+ G +R+ + + S
Sbjct 2 IFLLDVNVLIALVDPAHIQHDAAHTWFEKQGQ-DWATCPLTQNGVLRIVGHGRYPNSPGT 60
Query 61 IADARRVLVALRAVGGHRFLADDVSLVDD---DVPLIVGYRQVTDAHLLTLARRRGVRLV 117
A ++ L ++ GH F DD+SL+D D ++ Q+TD++LL LA +L
Sbjct 61 PAAVAELMTTLCSLPGHCFWPDDISLLDTEKLDATRLLTSAQLTDSYLLALACAHNGQLA 120
Query 118 TFD 120
TFD
Sbjct 121 TFD 123
>gi|87123276|ref|ZP_01079127.1| hypothetical protein RS9917_05435 [Synechococcus sp. RS9917]
gi|86168996|gb|EAQ70252.1| hypothetical protein RS9917_05435 [Synechococcus sp. RS9917]
Length=143
Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/122 (35%), Positives = 67/122 (55%), Gaps = 4/122 (3%)
Query 2 ALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGI 61
ALLD+N ++AL H H+ +W + +A GWA+CP+++ G +R+ + P +
Sbjct 3 ALLDINVIIALLDGQHSLHSTASQWLSHHAAAGWASCPISQNGVIRIMSQPSYPNAQPPA 62
Query 62 ADARRVLVALRAVGGHRFLADDVSLVDD---DVPLIVGYRQVTDAHLLTLARRRGVRLVT 118
A A R+ A R H+F +SL+D ++G RQ+TDA+LL +A LV+
Sbjct 63 AIASRLAEACRH-PSHQFWGGALSLLDPRHLKWHCLLGPRQITDAYLLAVAVANDGCLVS 121
Query 119 FD 120
FD
Sbjct 122 FD 123
>gi|336179654|ref|YP_004585029.1| PIN domain-containing protein family protein [Frankia symbiont
of Datisca glomerata]
gi|334860634|gb|AEH11108.1| PIN domain protein family protein [Frankia symbiont of Datisca
glomerata]
Length=131
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/124 (35%), Positives = 61/124 (50%), Gaps = 6/124 (4%)
Query 3 LLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGIA 62
LLD N L+ L H+HH W A +ATCP+TE VR+ ++
Sbjct 4 LLDANVLITLIVTDHVHHDAAEAWLAGTAGR-FATCPITEGSLVRL-----LIREGQSAQ 57
Query 63 DARRVLVALRAVGGHRFLADDVSLVDDDVPLIVGYRQVTDAHLLTLARRRGVRLVTFDAG 122
A V+ A+ H F D+VS + ++G+RQVTDA+L LAR RL +F+ G
Sbjct 58 TATAVVSAIAGDSRHEFWPDEVSYSAVSMTGVIGHRQVTDAYLAYLARTHNGRLASFNQG 117
Query 123 VFTL 126
+ L
Sbjct 118 LAKL 121
>gi|317967919|ref|ZP_07969309.1| hypothetical protein SCB02_00127 [Synechococcus sp. CB0205]
Length=144
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/123 (35%), Positives = 57/123 (47%), Gaps = 3/123 (2%)
Query 1 VALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIG 60
ALLDVN L+AL H+HH WF WA+C +T+ +R+ NP+ S
Sbjct 5 TALLDVNVLIALLDPHHVHHELCHGWFADRGAAPWASCAMTQNAVLRILGNPRYPISPGP 64
Query 61 IADARRVLVALRAVGGHRFLADDVSLVDDDV---PLIVGYRQVTDAHLLTLARRRGVRLV 117
L +L GH F + SL+ ++ Y Q+TD +LL LAR G L
Sbjct 65 PPTIAPHLDSLVEHPGHEFWDSNPSLLSQGFIARSALIDYAQITDLYLLALARHHGGTLA 124
Query 118 TFD 120
T D
Sbjct 125 TLD 127
>gi|124515583|gb|EAY57093.1| conserved hypothetical protein [Leptospirillum rubarum]
Length=193
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/116 (34%), Positives = 62/116 (54%), Gaps = 4/116 (3%)
Query 2 ALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGI 61
+LLD+N L+ L H+ H+ RE + +AT GW++CPLT+ G + + + P P I +
Sbjct 71 SLLDINVLIVLLDSDHVFHSASREGLSLHATDGWSSCPLTDNGCMCIMSCPND-PDTIPV 129
Query 62 ADARRVLVALRAVGGHRFLADDVSLVDDDVPLIV---GYRQVTDAHLLTLARRRGV 114
+ R L + H+F +DV +D V + G RQ+TD L+ + RR V
Sbjct 130 SRIRDRLSEAASGPPHQFWPEDVHFLDAGVAVASRTHGPRQITDLSWLSPSGRRDV 185
>gi|227876599|ref|ZP_03994709.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
gi|227842800|gb|EEJ52999.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
Length=130
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/121 (32%), Positives = 59/121 (49%), Gaps = 7/121 (5%)
Query 3 LLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGIA 62
L+D NAL+A +H HH + WF T+ TCP+TE R ++ + +
Sbjct 5 LIDANALIAFNISTHQHHDVVLRWFAQADTV--LTCPITEGALFRF-----IIRNHFDFS 57
Query 63 DARRVLVALRAVGGHRFLADDVSLVDDDVPLIVGYRQVTDAHLLTLARRRGVRLVTFDAG 122
A ++L A+ + + DD+ D + + G+RQVTD +L LA L TFD G
Sbjct 58 VACQLLTDFCAIPKVQRIPDDLHYDDANWTGVRGFRQVTDVYLAELALHHDALLATFDQG 117
Query 123 V 123
+
Sbjct 118 I 118
>gi|16264146|ref|NP_436938.1| hypothetical protein SM_b20412 [Sinorhizobium meliloti 1021]
gi|15140271|emb|CAC48798.1| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti 1021]
Length=54
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/51 (51%), Positives = 32/51 (63%), Gaps = 0/51 (0%)
Query 3 LLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPK 53
LLDVN L+AL SHI H EWF + WATCP+TE G +R+ NP+
Sbjct 4 LLDVNVLIALIDPSHIGHDDAHEWFASIGQTAWATCPITENGVIRIVGNPE 54
>gi|324997204|ref|ZP_08118316.1| toxin [Pseudonocardia sp. P1]
Length=141
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/122 (36%), Positives = 56/122 (46%), Gaps = 8/122 (6%)
Query 3 LLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGIA 62
LLD N L+AL H HH R W +A CP+ E VR PS
Sbjct 5 LLDANVLIALTVTEHEHHDRASAW--GARIERFALCPVVEGALVRFLVRAGETPST---- 58
Query 63 DARRVLVALRAVGGHRFLADDVSLVDDDVPLIVGYRQVTDAHLLTL-ARRRGVRLVTFDA 121
A +L A+ A+ G F D +S D + + G+RQVTDA+L +L A G T D
Sbjct 59 -ATGLLRAVHALPGCEFWPDSLSFADARLGHVGGHRQVTDAYLTSLVAAVPGASPATLDE 117
Query 122 GV 123
G+
Sbjct 118 GL 119
>gi|225156269|ref|ZP_03724747.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
gi|224803001|gb|EEG21246.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
Length=131
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/122 (35%), Positives = 60/122 (50%), Gaps = 9/122 (7%)
Query 3 LLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGIA 62
LLDVN L+A H H + W TC + E GF+R+S + L +A
Sbjct 4 LLDVNGLIAWRHTQHPKHVSLHAWAVRTGFKHMGTCAIVELGFLRISMSHYQL----TLA 59
Query 63 DARRVLVALRAVGGHRFLADDVSLVDDDVPL-IVGYRQVTDAHLLTLARRRGVRLVTFDA 121
DAR+ L +R + G ++AD S +PL + TDA+L LA G++L TFD
Sbjct 60 DARKALADIRKLTG-GYIADCPS---PALPLWATTAARTTDAYLCQLATAHGLQLATFDT 115
Query 122 GV 123
G+
Sbjct 116 GI 117
>gi|289749117|ref|ZP_06508495.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289689704|gb|EFD57133.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=116
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/88 (37%), Positives = 47/88 (54%), Gaps = 5/88 (5%)
Query 39 PLTEAGFVRVSTNPKVLPSAIGIADARRVLVALRAVGGHRFLADDVSLVDDDVPLIVGYR 98
P+T+ VR ++ S A AR V+ A++ H F D +S +V +VG+R
Sbjct 22 PMTQGSLVRF-----LVRSGQSAAAARDVVSAVQCTSRHEFWPDALSFAGVEVAGVVGHR 76
Query 99 QVTDAHLLTLARRRGVRLVTFDAGVFTL 126
QVTDA+L LAR +L T D+G+ L
Sbjct 77 QVTDAYLAQLARSHDGQLATLDSGLAHL 104
>gi|160898241|ref|YP_001563823.1| PilT domain-containing protein [Delftia acidovorans SPH-1]
gi|160363825|gb|ABX35438.1| PIN domain protein family protein [Delftia acidovorans SPH-1]
Length=145
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/134 (33%), Positives = 63/134 (48%), Gaps = 26/134 (19%)
Query 5 DVNALVALAWDSHIHHARIREWFT---ANATLG--WATCPLTEAGFVRVSTNPKVLPSAI 59
DVN LVA + H HH+ R+W A+A+ G P+ A F+R+ T+PK+ +
Sbjct 4 DVNLLVAASRSDHPHHSVARDWLEQAMADASQGVLLKLQPMVVASFLRLVTHPKIFVNPT 63
Query 60 GIADARRVLVALRAVGG------------HRFLADDVSLVDDDVPLIVGYRQVTDAHLLT 107
+A+A R + AL A G R L D +L +DVP DA L
Sbjct 64 PMAEALRFIDALLASPGVEQAVLGAEWPALRQLCADKALAANDVP---------DAWLAA 114
Query 108 LARRRGVRLVTFDA 121
A +G +V+FDA
Sbjct 115 AAIHQGEHVVSFDA 128
>gi|16264145|ref|NP_436937.1| hypothetical protein SM_b20411 [Sinorhizobium meliloti 1021]
gi|15140270|emb|CAC48797.1| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti 1021]
Length=82
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/76 (40%), Positives = 44/76 (58%), Gaps = 3/76 (3%)
Query 66 RVLVALRAVGGHRFLADDVSLV--DDDVP-LIVGYRQVTDAHLLTLARRRGVRLVTFDAG 122
++ LR++ GH F DDVSLV D +P I+ QVTD +LL LA+ RG +L TFD
Sbjct 2 EIVAKLRSLPGHVFWPDDVSLVGSSDIIPSKILTSGQVTDTYLLALAKARGGKLATFDRK 61
Query 123 VFTLAQQRPKTPVELL 138
+ A + + + L+
Sbjct 62 LSAAAVTKGNSALHLI 77
>gi|218459869|ref|ZP_03499960.1| hypothetical protein RetlK5_10369 [Rhizobium etli Kim 5]
Length=100
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/77 (43%), Positives = 43/77 (56%), Gaps = 3/77 (3%)
Query 47 RVSTNPKVLPSAIGIADARRVLVALRAVGGHRFLADDVSLVD--DDVPL-IVGYRQVTDA 103
R+ +PK S A ++ LR++ GH F DDVSLV D P I+ QVTD
Sbjct 1 RIVGHPKYPNSPGSPALVMEIVRKLRSLPGHSFWPDDVSLVGSGDIAPTKILTPGQVTDT 60
Query 104 HLLTLARRRGVRLVTFD 120
+LL LA+ RG +L TFD
Sbjct 61 YLLALAKARGGQLATFD 77
>gi|190895067|ref|YP_001985360.1| hypothetical protein RHECIAT_PC0000733 [Rhizobium etli CIAT 652]
gi|190700728|gb|ACE94810.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
Length=82
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/77 (41%), Positives = 44/77 (58%), Gaps = 3/77 (3%)
Query 66 RVLVALRAVGGHRFLADDVSLVD--DDVPL-IVGYRQVTDAHLLTLARRRGVRLVTFDAG 122
++ LR++ GH F DDVSLV D P I+ QVTD +LL LA+ G +L TFD
Sbjct 2 EIVRKLRSLPGHSFWPDDVSLVGSGDIAPTKILTSGQVTDTYLLALAKAHGGQLATFDRK 61
Query 123 VFTLAQQRPKTPVELLT 139
+ A R + ++L+T
Sbjct 62 LSAAAVTRGNSALQLIT 78
>gi|225155788|ref|ZP_03724275.1| hypothetical protein ObacDRAFT_8771 [Opitutaceae bacterium TAV2]
gi|224803440|gb|EEG21676.1| hypothetical protein ObacDRAFT_8771 [Opitutaceae bacterium TAV2]
Length=139
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/129 (30%), Positives = 56/129 (44%), Gaps = 12/129 (9%)
Query 3 LLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGIA 62
LLD +A +A H ++ +R W GW T VR+ NP V+ +
Sbjct 4 LLDNDAFLAAICLGHPNNKTVRAWLDQAKPSGWGITAETYLAAVRLMMNPAVMQQHV--- 60
Query 63 DARRVLVALRAV-----GGH--RFLADDVSLVDDDVPLIVGYRQVTDAHLLTLARRRGVR 115
R+V AL AV G H R + + + G++QV D L+ +AR+ G +
Sbjct 61 --RKVDQALDAVDAELSGKHPGRIVYASENPNRTMLAKAQGHKQVMDIWLVQIARQEGCK 118
Query 116 LVTFDAGVF 124
L T DAG
Sbjct 119 LATNDAGTL 127
Lambda K H
0.326 0.139 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 130347035928
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40