BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2507
Length=273
Score E
Sequences producing significant alignments: (Bits) Value
gi|15842035|ref|NP_337072.1| hypothetical protein MT2582 [Mycoba... 531 4e-149
gi|15609644|ref|NP_217023.1| proline rich membrane protein [Myco... 531 5e-149
gi|289448152|ref|ZP_06437896.1| conserved proline rich membrane ... 372 3e-101
gi|167967652|ref|ZP_02549929.1| hypothetical protein MtubH3_0629... 317 9e-85
gi|240171590|ref|ZP_04750249.1| proline rich membrane protein [M... 317 2e-84
gi|308373433|ref|ZP_07667578.1| conserved proline rich membrane ... 301 1e-79
gi|2222716|emb|CAB09912.1| hypothetical protein MLCL383.38c [Myc... 296 3e-78
gi|15827138|ref|NP_301401.1| hypothetical protein ML0431 [Mycoba... 295 4e-78
gi|183983829|ref|YP_001852120.1| proline rich membrane protein [... 280 1e-73
gi|118619029|ref|YP_907361.1| proline rich membrane protein [Myc... 278 9e-73
gi|289570667|ref|ZP_06450894.1| conserved proline rich membrane ... 248 5e-64
gi|41408414|ref|NP_961250.1| hypothetical protein MAP2316 [Mycob... 234 1e-59
gi|336460990|gb|EGO39870.1| Mycobacterium membrane protein [Myco... 233 2e-59
gi|118464794|ref|YP_880900.1| hypothetical protein MAV_1668 [Myc... 233 2e-59
gi|254774494|ref|ZP_05216010.1| hypothetical protein MaviaA2_074... 229 3e-58
gi|254823123|ref|ZP_05228124.1| hypothetical protein MintA_24555... 214 1e-53
gi|296170424|ref|ZP_06852012.1| proline rich membrane protein [M... 210 2e-52
gi|342857895|ref|ZP_08714551.1| hypothetical protein MCOL_03435 ... 178 8e-43
gi|120405050|ref|YP_954879.1| hypothetical protein Mvan_4096 [My... 162 6e-38
gi|145223134|ref|YP_001133812.1| hypothetical protein Mflv_2547 ... 159 4e-37
gi|315443591|ref|YP_004076470.1| hypothetical protein Mspyr1_197... 159 5e-37
gi|333990038|ref|YP_004522652.1| proline rich membrane protein [... 152 4e-35
gi|118469241|ref|YP_888980.1| hypothetical protein MSMEG_4720 [M... 131 8e-29
gi|108800602|ref|YP_640799.1| hypothetical protein Mmcs_3636 [My... 126 3e-27
gi|169628629|ref|YP_001702278.1| hypothetical protein MAB_1539c ... 91.7 1e-16
gi|126434050|ref|YP_001069741.1| hypothetical protein Mjls_1449 ... 61.6 1e-07
gi|108798366|ref|YP_638563.1| hypothetical protein Mmcs_1395 [My... 60.5 3e-07
gi|169627621|ref|YP_001701270.1| hypothetical protein MAB_0517 [... 53.5 3e-05
gi|315445549|ref|YP_004078428.1| hypothetical protein Mspyr1_400... 51.6 1e-04
gi|145225252|ref|YP_001135930.1| hypothetical protein Mflv_4674 ... 51.6 1e-04
gi|296169015|ref|ZP_06850680.1| MmpS3 protein [Mycobacterium par... 50.8 2e-04
gi|120402792|ref|YP_952621.1| hypothetical protein Mvan_1793 [My... 45.4 0.008
gi|118470889|ref|YP_886299.1| MmpS3 protein [Mycobacterium smegm... 44.7 0.015
gi|118464384|ref|YP_883305.1| hypothetical protein MAV_4157 [Myc... 43.5 0.036
gi|336459522|gb|EGO38459.1| Mycobacterium membrane protein [Myco... 43.5 0.036
gi|41409408|ref|NP_962244.1| hypothetical protein MAP3310 [Mycob... 42.7 0.058
gi|262204289|ref|YP_003275497.1| hypothetical protein Gbro_4471 ... 40.4 0.32
gi|145223538|ref|YP_001134216.1| hypothetical protein Mflv_2951 ... 40.0 0.36
gi|343924446|ref|ZP_08763995.1| hypothetical protein GOALK_016_0... 40.0 0.39
gi|336461922|gb|EGO40775.1| Mycobacterium membrane protein [Myco... 38.1 1.4
gi|308370942|ref|ZP_07423296.2| membrane protein mmpS3 [Mycobact... 37.4 2.5
gi|108800262|ref|YP_640459.1| hypothetical protein Mmcs_3296 [My... 37.4 2.6
gi|308375809|ref|ZP_07445176.2| membrane protein mmpS3 [Mycobact... 36.2 5.5
>gi|15842035|ref|NP_337072.1| hypothetical protein MT2582 [Mycobacterium tuberculosis CDC1551]
gi|254232636|ref|ZP_04925963.1| hypothetical protein TBCG_02447 [Mycobacterium tuberculosis C]
gi|308232156|ref|ZP_07664015.1| conserved proline rich membrane protein [Mycobacterium tuberculosis
SUMu001]
11 more sequence titles
Length=275
Score = 531 bits (1368), Expect = 4e-149, Method: Compositional matrix adjust.
Identities = 273/273 (100%), Positives = 273/273 (100%), Gaps = 0/273 (0%)
Query 1 MNDPRRPQRFGPPLSGYGPTGPQVPPNPPTADPAYADQSPYASTYGGYVSPPWSPGGPPP 60
MNDPRRPQRFGPPLSGYGPTGPQVPPNPPTADPAYADQSPYASTYGGYVSPPWSPGGPPP
Sbjct 3 MNDPRRPQRFGPPLSGYGPTGPQVPPNPPTADPAYADQSPYASTYGGYVSPPWSPGGPPP 62
Query 61 RPPQWPPGPHEASPTQQLPQYWQYDQPPPGGFPPDGLTPPPPQGPRTPRWLWFAAGSAVL 120
RPPQWPPGPHEASPTQQLPQYWQYDQPPPGGFPPDGLTPPPPQGPRTPRWLWFAAGSAVL
Sbjct 63 RPPQWPPGPHEASPTQQLPQYWQYDQPPPGGFPPDGLTPPPPQGPRTPRWLWFAAGSAVL 122
Query 121 LVVALVIALVIANGSVKKQTAIEPLPPMPGPSPTRPTTTTPTPPSPSAAPAPTTTTGTPS 180
LVVALVIALVIANGSVKKQTAIEPLPPMPGPSPTRPTTTTPTPPSPSAAPAPTTTTGTPS
Sbjct 123 LVVALVIALVIANGSVKKQTAIEPLPPMPGPSPTRPTTTTPTPPSPSAAPAPTTTTGTPS 182
Query 181 ETVAGAMQTVVYDVTGEGRAISITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHPASVTI 240
ETVAGAMQTVVYDVTGEGRAISITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHPASVTI
Sbjct 183 ETVAGAMQTVVYDVTGEGRAISITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHPASVTI 242
Query 241 VNIGHNVTCSVTVAGVQVRQRTGAGLTICDAPS 273
VNIGHNVTCSVTVAGVQVRQRTGAGLTICDAPS
Sbjct 243 VNIGHNVTCSVTVAGVQVRQRTGAGLTICDAPS 275
>gi|15609644|ref|NP_217023.1| proline rich membrane protein [Mycobacterium tuberculosis H37Rv]
gi|31793687|ref|NP_856180.1| proline rich membrane protein [Mycobacterium bovis AF2122/97]
gi|121638389|ref|YP_978613.1| putative proline rich membrane protein [Mycobacterium bovis BCG
str. Pasteur 1173P2]
51 more sequence titles
Length=273
Score = 531 bits (1367), Expect = 5e-149, Method: Compositional matrix adjust.
Identities = 273/273 (100%), Positives = 273/273 (100%), Gaps = 0/273 (0%)
Query 1 MNDPRRPQRFGPPLSGYGPTGPQVPPNPPTADPAYADQSPYASTYGGYVSPPWSPGGPPP 60
MNDPRRPQRFGPPLSGYGPTGPQVPPNPPTADPAYADQSPYASTYGGYVSPPWSPGGPPP
Sbjct 1 MNDPRRPQRFGPPLSGYGPTGPQVPPNPPTADPAYADQSPYASTYGGYVSPPWSPGGPPP 60
Query 61 RPPQWPPGPHEASPTQQLPQYWQYDQPPPGGFPPDGLTPPPPQGPRTPRWLWFAAGSAVL 120
RPPQWPPGPHEASPTQQLPQYWQYDQPPPGGFPPDGLTPPPPQGPRTPRWLWFAAGSAVL
Sbjct 61 RPPQWPPGPHEASPTQQLPQYWQYDQPPPGGFPPDGLTPPPPQGPRTPRWLWFAAGSAVL 120
Query 121 LVVALVIALVIANGSVKKQTAIEPLPPMPGPSPTRPTTTTPTPPSPSAAPAPTTTTGTPS 180
LVVALVIALVIANGSVKKQTAIEPLPPMPGPSPTRPTTTTPTPPSPSAAPAPTTTTGTPS
Sbjct 121 LVVALVIALVIANGSVKKQTAIEPLPPMPGPSPTRPTTTTPTPPSPSAAPAPTTTTGTPS 180
Query 181 ETVAGAMQTVVYDVTGEGRAISITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHPASVTI 240
ETVAGAMQTVVYDVTGEGRAISITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHPASVTI
Sbjct 181 ETVAGAMQTVVYDVTGEGRAISITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHPASVTI 240
Query 241 VNIGHNVTCSVTVAGVQVRQRTGAGLTICDAPS 273
VNIGHNVTCSVTVAGVQVRQRTGAGLTICDAPS
Sbjct 241 VNIGHNVTCSVTVAGVQVRQRTGAGLTICDAPS 273
>gi|289448152|ref|ZP_06437896.1| conserved proline rich membrane protein [Mycobacterium tuberculosis
CPHL_A]
gi|289421110|gb|EFD18311.1| conserved proline rich membrane protein [Mycobacterium tuberculosis
CPHL_A]
Length=274
Score = 372 bits (955), Expect = 3e-101, Method: Compositional matrix adjust.
Identities = 272/273 (99%), Positives = 272/273 (99%), Gaps = 1/273 (0%)
Query 1 MNDPRRPQRFGPPLSGYGPTGPQVPPNPPTADPAYADQSPYASTYGGYVSPPWSPGGPPP 60
MNDPRRPQRFGPPLSGYGPTGPQVPPNPPTADPAYADQSPYASTYGGYVSPPWSPGGPPP
Sbjct 3 MNDPRRPQRFGPPLSGYGPTGPQVPPNPPTADPAYADQSPYASTYGGYVSPPWSPGGPPP 62
Query 61 RPPQWPPGPHEASPTQQLPQYWQYDQPPPGGFPPDGLTPPPPQGPRTPRWLWFAAGSAVL 120
RPPQWPPGPHEASPTQQLPQYWQYDQPP GGFPPDGLTPPPPQGPRTPRWLWFAAGSAVL
Sbjct 63 RPPQWPPGPHEASPTQQLPQYWQYDQPP-GGFPPDGLTPPPPQGPRTPRWLWFAAGSAVL 121
Query 121 LVVALVIALVIANGSVKKQTAIEPLPPMPGPSPTRPTTTTPTPPSPSAAPAPTTTTGTPS 180
LVVALVIALVIANGSVKKQTAIEPLPPMPGPSPTRPTTTTPTPPSPSAAPAPTTTTGTPS
Sbjct 122 LVVALVIALVIANGSVKKQTAIEPLPPMPGPSPTRPTTTTPTPPSPSAAPAPTTTTGTPS 181
Query 181 ETVAGAMQTVVYDVTGEGRAISITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHPASVTI 240
ETVAGAMQTVVYDVTGEGRAISITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHPASVTI
Sbjct 182 ETVAGAMQTVVYDVTGEGRAISITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHPASVTI 241
Query 241 VNIGHNVTCSVTVAGVQVRQRTGAGLTICDAPS 273
VNIGHNVTCSVTVAGVQVRQRTGAGLTICDAPS
Sbjct 242 VNIGHNVTCSVTVAGVQVRQRTGAGLTICDAPS 274
>gi|167967652|ref|ZP_02549929.1| hypothetical protein MtubH3_06296 [Mycobacterium tuberculosis
H37Ra]
gi|254551554|ref|ZP_05142001.1| hypothetical protein Mtube_14035 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|294994386|ref|ZP_06800077.1| hypothetical protein Mtub2_07678 [Mycobacterium tuberculosis
210]
6 more sequence titles
Length=163
Score = 317 bits (813), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 162/163 (99%), Positives = 163/163 (100%), Gaps = 0/163 (0%)
Query 111 LWFAAGSAVLLVVALVIALVIANGSVKKQTAIEPLPPMPGPSPTRPTTTTPTPPSPSAAP 170
+WFAAGSAVLLVVALVIALVIANGSVKKQTAIEPLPPMPGPSPTRPTTTTPTPPSPSAAP
Sbjct 1 MWFAAGSAVLLVVALVIALVIANGSVKKQTAIEPLPPMPGPSPTRPTTTTPTPPSPSAAP 60
Query 171 APTTTTGTPSETVAGAMQTVVYDVTGEGRAISITYMDSGNVIQTEFNVALPWRKEVSLSK 230
APTTTTGTPSETVAGAMQTVVYDVTGEGRAISITYMDSGNVIQTEFNVALPWRKEVSLSK
Sbjct 61 APTTTTGTPSETVAGAMQTVVYDVTGEGRAISITYMDSGNVIQTEFNVALPWRKEVSLSK 120
Query 231 SSLHPASVTIVNIGHNVTCSVTVAGVQVRQRTGAGLTICDAPS 273
SSLHPASVTIVNIGHNVTCSVTVAGVQVRQRTGAGLTICDAPS
Sbjct 121 SSLHPASVTIVNIGHNVTCSVTVAGVQVRQRTGAGLTICDAPS 163
>gi|240171590|ref|ZP_04750249.1| proline rich membrane protein [Mycobacterium kansasii ATCC 12478]
Length=263
Score = 317 bits (811), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 193/276 (70%), Positives = 211/276 (77%), Gaps = 20/276 (7%)
Query 1 MNDPRRPQRFGPPLSGYGPTGPQVPPNPPTADPAYADQSPYASTYGGYVSPPWSPGGPPP 60
MNDPRRPQR+GPP G GPT PQ P NPP DPAYA Q+PYA TY G++
Sbjct 1 MNDPRRPQRYGPPQPGPGPTWPQGPVNPPPVDPAYAGQAPYAPTYSGHI----------- 49
Query 61 RPPQWPPGPHEASPTQQLP-QYWQYDQPPPGGFPPDGLTPPPPQGPRTPRWLWFAAGSAV 119
PQW PG +E +PTQQLP +YWQ D P PG PPP P TPRWLW AAG+AV
Sbjct 50 --PQWAPGAYEPNPTQQLPPRYWQQDHPEPGEVLHGAA--PPPHDPSTPRWLWVAAGAAV 105
Query 120 LLVVALVIALVIANGSVKKQTAIEPLPPMPGPSPT-RPTTTTPTPPSPSAAPAPTTT--T 176
LLVV LVIALVIAN SVK QTA+EPLPPMP PS T +P TT P+PS PAPTTT +
Sbjct 106 LLVVGLVIALVIANMSVKNQTAVEPLPPMPTPSSTLKPPTTRTMTPTPSIVPAPTTTGGS 165
Query 177 GTPSET-VAGAMQTVVYDVTGEGRAISITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHP 235
GTPSET GAMQTVVY+VTGEGRAIS+TY+D+G+VIQTEFNVALPW KEVSL KSSLHP
Sbjct 166 GTPSETPTPGAMQTVVYNVTGEGRAISVTYIDTGDVIQTEFNVALPWSKEVSLPKSSLHP 225
Query 236 ASVTIVNIGHNVTCSVTVAGVQVRQRTGAGLTICDA 271
ASVTI+NIGHNVTCSVTVAGVQVRQRTG GLTICDA
Sbjct 226 ASVTIINIGHNVTCSVTVAGVQVRQRTGVGLTICDA 261
>gi|308373433|ref|ZP_07667578.1| conserved proline rich membrane protein [Mycobacterium tuberculosis
SUMu005]
gi|308337678|gb|EFP26529.1| conserved proline rich membrane protein [Mycobacterium tuberculosis
SUMu005]
Length=155
Score = 301 bits (770), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 154/155 (99%), Positives = 155/155 (100%), Gaps = 0/155 (0%)
Query 119 VLLVVALVIALVIANGSVKKQTAIEPLPPMPGPSPTRPTTTTPTPPSPSAAPAPTTTTGT 178
+LLVVALVIALVIANGSVKKQTAIEPLPPMPGPSPTRPTTTTPTPPSPSAAPAPTTTTGT
Sbjct 1 MLLVVALVIALVIANGSVKKQTAIEPLPPMPGPSPTRPTTTTPTPPSPSAAPAPTTTTGT 60
Query 179 PSETVAGAMQTVVYDVTGEGRAISITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHPASV 238
PSETVAGAMQTVVYDVTGEGRAISITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHPASV
Sbjct 61 PSETVAGAMQTVVYDVTGEGRAISITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHPASV 120
Query 239 TIVNIGHNVTCSVTVAGVQVRQRTGAGLTICDAPS 273
TIVNIGHNVTCSVTVAGVQVRQRTGAGLTICDAPS
Sbjct 121 TIVNIGHNVTCSVTVAGVQVRQRTGAGLTICDAPS 155
>gi|2222716|emb|CAB09912.1| hypothetical protein MLCL383.38c [Mycobacterium leprae]
Length=261
Score = 296 bits (757), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 166/275 (61%), Positives = 203/275 (74%), Gaps = 20/275 (7%)
Query 1 MNDPRRPQRFGPPLSGYGPTGPQVPPNPPTADPAYADQSPYASTYGGYVSPPWSPGGPPP 60
MN+PRR + GP L+G GP PQV PP DPAYA+Q+PYA YG + PPW+P PP
Sbjct 3 MNNPRRSEWLGPSLAGSGPIEPQVHQYPPLTDPAYAEQAPYAPAYGASL-PPWTPKKPP- 60
Query 61 RPPQWPPGPHEASPTQQLPQYWQYDQPPPGGFPPDGLTPPPPQGPRTPRW-LWFAAGSAV 119
QQLP+YWQ DQPPP PP+GLT PPP P++P W LW AG++V
Sbjct 61 ---------------QQLPRYWQQDQPPPTDIPPEGLTLPPPHEPKSPHWFLWVVAGASV 105
Query 120 LLVVALVIALVIANGSVKKQTAIEPLPPMPGPSPTRPTTTTPTPPSPSAAPAPTTT-TGT 178
+LVV LV+AL+IANG++K QTA+ PLP + S PT TT T P+P+A PAP+TT +GT
Sbjct 106 VLVVGLVMALIIANGAIKTQTAVPPLPAITESSSATPTPTTKTSPTPTAGPAPSTTGSGT 165
Query 179 PSETVA-GAMQTVVYDVTGEGRAISITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHPAS 237
++T+ AM VVY +TG+GRAIS+TYMD+G+VIQTEFNV LPW K+VSLSKS++HPAS
Sbjct 166 LTQTIGPSAMLDVVYSITGQGRAISVTYMDTGDVIQTEFNVVLPWSKQVSLSKSAVHPAS 225
Query 238 VTIVNIGHNVTCSVTVAGVQVRQRTGAGLTICDAP 272
VTIVNIGH+VTCSVTVAGVQ+RQ TG GLTICDAP
Sbjct 226 VTIVNIGHDVTCSVTVAGVQIRQHTGVGLTICDAP 260
>gi|15827138|ref|NP_301401.1| hypothetical protein ML0431 [Mycobacterium leprae TN]
gi|221229616|ref|YP_002503032.1| hypothetical protein MLBr_00431 [Mycobacterium leprae Br4923]
gi|13092686|emb|CAC29939.1| putative membrane protein [Mycobacterium leprae]
gi|219932723|emb|CAR70524.1| putative membrane protein [Mycobacterium leprae Br4923]
Length=259
Score = 295 bits (756), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 166/275 (61%), Positives = 203/275 (74%), Gaps = 20/275 (7%)
Query 1 MNDPRRPQRFGPPLSGYGPTGPQVPPNPPTADPAYADQSPYASTYGGYVSPPWSPGGPPP 60
MN+PRR + GP L+G GP PQV PP DPAYA+Q+PYA YG + PPW+P PP
Sbjct 1 MNNPRRSEWLGPSLAGSGPIEPQVHQYPPLTDPAYAEQAPYAPAYGASL-PPWTPKKPP- 58
Query 61 RPPQWPPGPHEASPTQQLPQYWQYDQPPPGGFPPDGLTPPPPQGPRTPRW-LWFAAGSAV 119
QQLP+YWQ DQPPP PP+GLT PPP P++P W LW AG++V
Sbjct 59 ---------------QQLPRYWQQDQPPPTDIPPEGLTLPPPHEPKSPHWFLWVVAGASV 103
Query 120 LLVVALVIALVIANGSVKKQTAIEPLPPMPGPSPTRPTTTTPTPPSPSAAPAPTTT-TGT 178
+LVV LV+AL+IANG++K QTA+ PLP + S PT TT T P+P+A PAP+TT +GT
Sbjct 104 VLVVGLVMALIIANGAIKTQTAVPPLPAITESSSATPTPTTKTSPTPTAGPAPSTTGSGT 163
Query 179 PSETVA-GAMQTVVYDVTGEGRAISITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHPAS 237
++T+ AM VVY +TG+GRAIS+TYMD+G+VIQTEFNV LPW K+VSLSKS++HPAS
Sbjct 164 LTQTIGPSAMLDVVYSITGQGRAISVTYMDTGDVIQTEFNVVLPWSKQVSLSKSAVHPAS 223
Query 238 VTIVNIGHNVTCSVTVAGVQVRQRTGAGLTICDAP 272
VTIVNIGH+VTCSVTVAGVQ+RQ TG GLTICDAP
Sbjct 224 VTIVNIGHDVTCSVTVAGVQIRQHTGVGLTICDAP 258
>gi|183983829|ref|YP_001852120.1| proline rich membrane protein [Mycobacterium marinum M]
gi|183177155|gb|ACC42265.1| conserved proline rich membrane protein [Mycobacterium marinum
M]
Length=263
Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 187/276 (68%), Positives = 211/276 (77%), Gaps = 20/276 (7%)
Query 1 MNDPRRPQRFGPPLSGYGPTGPQVPPNPPTADPAYADQSPYASTYGGYVSPPWSPGGPPP 60
MNDPRRP R+GPP G GP PQ P N P ADPAYADQ+PYA TYGG+V
Sbjct 1 MNDPRRPLRYGPPQPGPGPGWPQGPVNTPPADPAYADQAPYAPTYGGHV----------- 49
Query 61 RPPQWPPGPH-EASPTQQLP-QYWQYDQPPPGGFPPDGLTPPPPQGPRTPRWLWFAAGSA 118
PQW PG + EA+PTQQLP QYWQ + PG DG PP P+TPRWLW AAG+A
Sbjct 50 --PQWAPGSYDEANPTQQLPPQYWQQNPGQPGEVLRDGPPPPEG--PKTPRWLWIAAGAA 105
Query 119 VLLVVALVIALVIANGSVKKQTAIEPLPPMPGPSPTRPTTTTPTPPSPSAAPAPTTTTGT 178
V+LV+ LVIALVIAN SVK QTA+EPLPP+ GPS T TT T P+PS++PAPTTT+G+
Sbjct 106 VVLVIGLVIALVIANISVKNQTALEPLPPIAGPSSTIAPPTTRTSPTPSSSPAPTTTSGS 165
Query 179 PSETVA---GAMQTVVYDVTGEGRAISITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHP 235
+ T GAMQTVVY VTGEGRAIS+TYMD+G+VIQTEFNVALPW KEVSLS+S+ HP
Sbjct 166 ATPTTTPTAGAMQTVVYTVTGEGRAISVTYMDTGDVIQTEFNVALPWSKEVSLSRSANHP 225
Query 236 ASVTIVNIGHNVTCSVTVAGVQVRQRTGAGLTICDA 271
ASVTIVNIGHNVTCSVTV+GVQVRQRTG GLTICDA
Sbjct 226 ASVTIVNIGHNVTCSVTVSGVQVRQRTGVGLTICDA 261
>gi|118619029|ref|YP_907361.1| proline rich membrane protein [Mycobacterium ulcerans Agy99]
gi|118571139|gb|ABL05890.1| conserved proline rich membrane protein [Mycobacterium ulcerans
Agy99]
Length=263
Score = 278 bits (710), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 185/276 (68%), Positives = 210/276 (77%), Gaps = 20/276 (7%)
Query 1 MNDPRRPQRFGPPLSGYGPTGPQVPPNPPTADPAYADQSPYASTYGGYVSPPWSPGGPPP 60
MNDPRRP R+GPP G GP PQ P N P ADPAYADQ+PYA TYGG+V
Sbjct 1 MNDPRRPLRYGPPQPGPGPGWPQGPVNTPPADPAYADQAPYAPTYGGHV----------- 49
Query 61 RPPQWPPGPH-EASPTQQLP-QYWQYDQPPPGGFPPDGLTPPPPQGPRTPRWLWFAAGSA 118
PQW G + EA+PTQQLP QYWQ + PG DG PP P+TPRWLW AAG+A
Sbjct 50 --PQWARGSYDEANPTQQLPPQYWQQNPGQPGEVLRDGPPPPEG--PKTPRWLWIAAGAA 105
Query 119 VLLVVALVIALVIANGSVKKQTAIEPLPPMPGPSPTRPTTTTPTPPSPSAAPAPTTTTGT 178
V+LV+ LVIALVIAN SVK QTA+EPLPP+ GPS T TT T P+PS++PAPTTT+G+
Sbjct 106 VVLVIGLVIALVIANISVKNQTALEPLPPIAGPSSTIAPPTTRTSPTPSSSPAPTTTSGS 165
Query 179 PSETVA---GAMQTVVYDVTGEGRAISITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHP 235
+ T GAMQTVVY VTGEGRAIS+TYMD+G+VIQTEFNVALPW +EVSLS+S+ HP
Sbjct 166 ATPTTTPTAGAMQTVVYTVTGEGRAISVTYMDTGDVIQTEFNVALPWNREVSLSRSANHP 225
Query 236 ASVTIVNIGHNVTCSVTVAGVQVRQRTGAGLTICDA 271
ASVTIVNIGHNVTCSVTV+GVQVRQRTG GLTICDA
Sbjct 226 ASVTIVNIGHNVTCSVTVSGVQVRQRTGVGLTICDA 261
>gi|289570667|ref|ZP_06450894.1| conserved proline rich membrane protein [Mycobacterium tuberculosis
T17]
gi|289544421|gb|EFD48069.1| conserved proline rich membrane protein [Mycobacterium tuberculosis
T17]
Length=134
Score = 248 bits (634), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 127/128 (99%), Positives = 127/128 (99%), Gaps = 0/128 (0%)
Query 146 PPMPGPSPTRPTTTTPTPPSPSAAPAPTTTTGTPSETVAGAMQTVVYDVTGEGRAISITY 205
P MPGPSPTRPTTTTPTPPSPSAAPAPTTTTGTPSETVAGAMQTVVYDVTGEGRAISITY
Sbjct 7 PAMPGPSPTRPTTTTPTPPSPSAAPAPTTTTGTPSETVAGAMQTVVYDVTGEGRAISITY 66
Query 206 MDSGNVIQTEFNVALPWRKEVSLSKSSLHPASVTIVNIGHNVTCSVTVAGVQVRQRTGAG 265
MDSGNVIQTEFNVALPWRKEVSLSKSSLHPASVTIVNIGHNVTCSVTVAGVQVRQRTGAG
Sbjct 67 MDSGNVIQTEFNVALPWRKEVSLSKSSLHPASVTIVNIGHNVTCSVTVAGVQVRQRTGAG 126
Query 266 LTICDAPS 273
LTICDAPS
Sbjct 127 LTICDAPS 134
>gi|41408414|ref|NP_961250.1| hypothetical protein MAP2316 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41396770|gb|AAS04633.1| hypothetical protein MAP_2316 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=253
Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 154/273 (57%), Positives = 187/273 (69%), Gaps = 26/273 (9%)
Query 1 MNDPRRPQRFGPPLSGYGPTGPQVPPNPPTADPAYADQSPYASTYGGYVSPPWSPGGPPP 60
MND R +RF PP Y P+ DPAYADQ+PYA TYG +SP
Sbjct 3 MNDSRPTERFSPPQPRYSPS----------VDPAYADQTPYAPTYGPTMSP--------- 43
Query 61 RPPQWPPGPHEASPTQQLPQYWQYDQPPPGGFPPDGLTPPPPQGPRTPRWLWFAAGSAVL 120
W P +E +PT+QLP YWQ + PP G G+ PPP + P++PRWLW AAG+AVL
Sbjct 44 ----WAPAANETNPTKQLPAYWQQELPPGGDPHAPGMAPPPGE-PKSPRWLWIAAGAAVL 98
Query 121 LVVALVIALVIANGSVKKQTAIEPLPPMPGPSPTRPTTTTPTPPS--PSAAPAPTTTTGT 178
LVVALVIALV+AN ++K QTA+ PLP MP PSP PTT+T PS P+ P +
Sbjct 99 LVVALVIALVLANDAIKTQTAVPPLPAMPEPSPETPTTSTHRSPSLIPAPIPPTSEPEPP 158
Query 179 PSETVAGAMQTVVYDVTGEGRAISITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHPASV 238
+ T AMQ VVY V+GEGRAISI Y+D+G++IQTEFNVALPW K+VSLSKS++HPA+V
Sbjct 159 TATTGPAAMQDVVYTVSGEGRAISIMYIDTGDLIQTEFNVALPWSKQVSLSKSAVHPANV 218
Query 239 TIVNIGHNVTCSVTVAGVQVRQRTGAGLTICDA 271
TIVNIGH+VTC+VTV GVQV +R G GLTICDA
Sbjct 219 TIVNIGHSVTCTVTVNGVQVSRRVGGGLTICDA 251
>gi|336460990|gb|EGO39870.1| Mycobacterium membrane protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=251
Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 154/273 (57%), Positives = 187/273 (69%), Gaps = 26/273 (9%)
Query 1 MNDPRRPQRFGPPLSGYGPTGPQVPPNPPTADPAYADQSPYASTYGGYVSPPWSPGGPPP 60
MND R +RF PP Y P+ DPAYADQ+PYA TYG +SP
Sbjct 1 MNDSRPTERFSPPQPRYSPS----------VDPAYADQTPYAPTYGPTMSP--------- 41
Query 61 RPPQWPPGPHEASPTQQLPQYWQYDQPPPGGFPPDGLTPPPPQGPRTPRWLWFAAGSAVL 120
W P +E +PT+QLP YWQ + PP G G+ PPP + P++PRWLW AAG+AVL
Sbjct 42 ----WAPAANETNPTKQLPAYWQQELPPGGDPHAPGMAPPPGE-PKSPRWLWIAAGAAVL 96
Query 121 LVVALVIALVIANGSVKKQTAIEPLPPMPGPSPTRPTTTTPTPPS--PSAAPAPTTTTGT 178
LVVALVIALV+AN ++K QTA+ PLP MP PSP PTT+T PS P+ P +
Sbjct 97 LVVALVIALVLANDAIKTQTAVPPLPAMPEPSPETPTTSTHRSPSLIPAPIPPTSEPEPP 156
Query 179 PSETVAGAMQTVVYDVTGEGRAISITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHPASV 238
+ T AMQ VVY V+GEGRAISI Y+D+G++IQTEFNVALPW K+VSLSKS++HPA+V
Sbjct 157 TATTGPAAMQDVVYTVSGEGRAISIMYIDTGDLIQTEFNVALPWSKQVSLSKSAVHPANV 216
Query 239 TIVNIGHNVTCSVTVAGVQVRQRTGAGLTICDA 271
TIVNIGH+VTC+VTV GVQV +R G GLTICDA
Sbjct 217 TIVNIGHSVTCTVTVNGVQVSRRVGGGLTICDA 249
>gi|118464794|ref|YP_880900.1| hypothetical protein MAV_1668 [Mycobacterium avium 104]
gi|118166081|gb|ABK66978.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=253
Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 155/273 (57%), Positives = 186/273 (69%), Gaps = 26/273 (9%)
Query 1 MNDPRRPQRFGPPLSGYGPTGPQVPPNPPTADPAYADQSPYASTYGGYVSPPWSPGGPPP 60
MND R +RF PP Y P+ DPAYADQ+PYA TYG +SP
Sbjct 3 MNDSRPTERFSPPQPRYSPS----------VDPAYADQTPYAPTYGPTMSP--------- 43
Query 61 RPPQWPPGPHEASPTQQLPQYWQYDQPPPGGFPPDGLTPPPPQGPRTPRWLWFAAGSAVL 120
W P +E +PT+QLP YWQ + PP GG P PPP P++PRWLW AAG+AVL
Sbjct 44 ----WAPAANETNPTKQLPAYWQQELPP-GGDPHTPGMAPPPGEPKSPRWLWIAAGAAVL 98
Query 121 LVVALVIALVIANGSVKKQTAIEPLPPMPGPSPTRPTTTTPTPPS--PSAAPAPTTTTGT 178
LVVALVIALV+AN ++K QTA+ PLP MP PSP PTT+T PS P+ P +
Sbjct 99 LVVALVIALVLANDAIKTQTAVPPLPAMPEPSPETPTTSTHRSPSLIPAPIPPTSEPEPP 158
Query 179 PSETVAGAMQTVVYDVTGEGRAISITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHPASV 238
+ T AMQ VVY V+GEGRAISI Y+D+G++IQTEFNVALPW K+VSLSKS++HPA+V
Sbjct 159 TATTGPAAMQDVVYTVSGEGRAISIMYIDTGDLIQTEFNVALPWTKQVSLSKSAVHPANV 218
Query 239 TIVNIGHNVTCSVTVAGVQVRQRTGAGLTICDA 271
TIVNIGH+VTC+VTV GVQV +R G GLTICDA
Sbjct 219 TIVNIGHSVTCTVTVNGVQVSRRVGGGLTICDA 251
>gi|254774494|ref|ZP_05216010.1| hypothetical protein MaviaA2_07463 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=253
Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 153/273 (57%), Positives = 186/273 (69%), Gaps = 26/273 (9%)
Query 1 MNDPRRPQRFGPPLSGYGPTGPQVPPNPPTADPAYADQSPYASTYGGYVSPPWSPGGPPP 60
MND R +RF PP Y P+ DPAYADQ+PYA TYG +SP
Sbjct 3 MNDSRPTERFSPPQPRYSPS----------VDPAYADQTPYAPTYGPTMSP--------- 43
Query 61 RPPQWPPGPHEASPTQQLPQYWQYDQPPPGGFPPDGLTPPPPQGPRTPRWLWFAAGSAVL 120
W P +E +PT+QLP YWQ + PP G G+ PPP + P++PR LW AAG+AVL
Sbjct 44 ----WAPAANETNPTKQLPAYWQQELPPGGDPHAPGMAPPPGE-PKSPRGLWIAAGAAVL 98
Query 121 LVVALVIALVIANGSVKKQTAIEPLPPMPGPSPTRPTTTTPTPPS--PSAAPAPTTTTGT 178
LVVALVIALV+AN ++K QTA+ PLP MP PSP PTT+T PS P+ P +
Sbjct 99 LVVALVIALVLANDAIKTQTAVPPLPAMPEPSPETPTTSTHRSPSLIPAPIPPTSEPEPP 158
Query 179 PSETVAGAMQTVVYDVTGEGRAISITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHPASV 238
+ T AMQ VVY V+GEGRAISI Y+D+G++IQTEFNVALPW K+VSLSKS++HPA+V
Sbjct 159 TATTGPAAMQDVVYSVSGEGRAISIMYIDTGDLIQTEFNVALPWSKQVSLSKSAVHPANV 218
Query 239 TIVNIGHNVTCSVTVAGVQVRQRTGAGLTICDA 271
TIVNIGH+VTC+VTV GVQV +R G GLTICDA
Sbjct 219 TIVNIGHSVTCTVTVNGVQVSRRVGGGLTICDA 251
>gi|254823123|ref|ZP_05228124.1| hypothetical protein MintA_24555 [Mycobacterium intracellulare
ATCC 13950]
Length=257
Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 156/279 (56%), Positives = 188/279 (68%), Gaps = 32/279 (11%)
Query 1 MNDPRRPQRFGPPLSGYGPTGPQVPPNPPTADPAYADQSPYASTYGGYVSPPWSPGGPPP 60
MND R +RF P L G PQ P ADPAYADQ+PYA TYGG + PPW+
Sbjct 1 MNDSRPTERFSPSLPG-----PQQRGYAPPADPAYADQTPYAPTYGGTM-PPWAATA--- 51
Query 61 RPPQWPPGPHEASPTQQLPQYWQYDQPPPGGFPPDGLTPPPPQGPRTPRWLWFAAGSAVL 120
+E + T++LP YWQ D PP G+ PPPP+GP++PRWLW AAG+AVL
Sbjct 52 ---------NETNTTKRLPAYWQQDLPPSDDPHSRGMAPPPPEGPKSPRWLWIAAGAAVL 102
Query 121 LVVALVIALVIANGSVKKQTAIEPLPPMPGPSPTRPT-------TTTPTPPSPSAAPA-P 172
LVVALVIAL +AN ++K QTA+ PLP MP +P PT T P P P++ P P
Sbjct 103 LVVALVIALALANDAIKTQTAVPPLPAMPETTPESPTPSARKSPTLIPAPIPPTSGPELP 162
Query 173 TTTTGTPSETVAGAMQTVVYDVTGEGRAISITYMDSGNVIQTEFNVALPWRKEVSLSKSS 232
T+TTG AMQ VVY VTGEGRAISI Y+D+G++IQTEFNV LPW K+VSL+KS+
Sbjct 163 TSTTG------PAAMQDVVYTVTGEGRAISIMYIDTGDLIQTEFNVELPWSKQVSLAKSA 216
Query 233 LHPASVTIVNIGHNVTCSVTVAGVQVRQRTGAGLTICDA 271
HPA+VTIVNIGH+VTC+VTV GVQV +R G GLTICDA
Sbjct 217 AHPANVTIVNIGHSVTCTVTVNGVQVSKRVGGGLTICDA 255
>gi|296170424|ref|ZP_06852012.1| proline rich membrane protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295894895|gb|EFG74616.1| proline rich membrane protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=259
Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 154/275 (56%), Positives = 178/275 (65%), Gaps = 24/275 (8%)
Query 1 MNDPRRPQRFGPPLSGYGPTGPQVPPNPPTADPAYADQSPYASTYGGYVSPPWSPGGPPP 60
MND R RF PPL G GP G PP ADPAYADQ+ YA TYG
Sbjct 3 MNDSRPTDRFSPPLPGSGPQGSWYPP----ADPAYADQAAYAPTYGS------------- 45
Query 61 RPPQWPPGPHEASPTQQLPQYWQYDQPPPGGFPPDGLTPPPPQGPRTPRWLWFAAGSAVL 120
+PP W PG +A+ T++LP YWQ++ P G P PP PRWLW AG+AVL
Sbjct 46 QPPPWAPGMTDANTTKELPAYWQHELPASGQLHPQAAPPPRGP-KPPPRWLWIVAGAAVL 104
Query 121 LVVALVIALVIANGSVKKQTAIEPLPPMPGPSPTRPTTTTPTPPSPSAAPAPTTTTG--- 177
LVVALV+ALV+ N ++K QTA+ PLP MP T T T SP PAP TG
Sbjct 105 LVVALVVALVLVNDAIKTQTAVPPLPAMP--ETTPTMPTPSTRTSPPRIPAPVPPTGGSP 162
Query 178 TPSETVA-GAMQTVVYDVTGEGRAISITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHPA 236
TP+E+ AMQ +VY V GEGRAISI Y+D+G +IQTEFNVALPW KEVSLSKS+ HPA
Sbjct 163 TPTESTGPAAMQDIVYSVAGEGRAISIMYIDTGGLIQTEFNVALPWSKEVSLSKSATHPA 222
Query 237 SVTIVNIGHNVTCSVTVAGVQVRQRTGAGLTICDA 271
+VTIVNIGHNVTCSVTV GVQ+ +R G GLTICDA
Sbjct 223 NVTIVNIGHNVTCSVTVDGVQMTKRVGVGLTICDA 257
>gi|342857895|ref|ZP_08714551.1| hypothetical protein MCOL_03435 [Mycobacterium colombiense CECT
3035]
gi|342135228|gb|EGT88394.1| hypothetical protein MCOL_03435 [Mycobacterium colombiense CECT
3035]
Length=223
Score = 178 bits (451), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 139/234 (60%), Positives = 166/234 (71%), Gaps = 16/234 (6%)
Query 40 PYASTYGGYVSPPWSPGGPPPRPPQWPPGPHEASPTQQLPQYWQYDQPPPGGFPPDGLTP 99
PYA +YGG +PPW+P P++A+ T+QLP YWQ D PP G P L P
Sbjct 2 PYAQSYGG-ATPPWAPT------------PNDANTTKQLPAYWQQDLPP-SGDLPPDLAP 47
Query 100 PPPQGPRTPRWLWFAAGSAVLLVVALVIALVIANGSVKKQTAIEPLPPMPGPSPTRPTTT 159
PPP GP++ RWLW AG+AVLLVVALVIALV+AN ++K QTA+ PLP MP SP TT+
Sbjct 48 PPPSGPKSSRWLWLGAGAAVLLVVALVIALVLANNAIKTQTAVPPLPAMPETSPETTTTS 107
Query 160 TPTPPSPSAAPAPTTTT-GTPSETVA-GAMQTVVYDVTGEGRAISITYMDSGNVIQTEFN 217
PS AP P T+ P ET AMQ VVY V+GEGRAISI Y+D+G +IQTEFN
Sbjct 108 PHRSPSLIPAPIPPTSGPELPPETTGPAAMQDVVYTVSGEGRAISIMYIDTGGLIQTEFN 167
Query 218 VALPWRKEVSLSKSSLHPASVTIVNIGHNVTCSVTVAGVQVRQRTGAGLTICDA 271
VALPW KEVSLSKS+ HPA+VT+VNIGH+VTC++TV GVQV +R G GLTICDA
Sbjct 168 VALPWSKEVSLSKSANHPANVTVVNIGHSVTCTLTVDGVQVSKRVGGGLTICDA 221
>gi|120405050|ref|YP_954879.1| hypothetical protein Mvan_4096 [Mycobacterium vanbaalenii PYR-1]
gi|119957868|gb|ABM14873.1| putative conserved proline rich membrane protein [Mycobacterium
vanbaalenii PYR-1]
Length=288
Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 132/277 (48%), Positives = 155/277 (56%), Gaps = 47/277 (16%)
Query 15 SGYGPTGPQVP-PNPPTADPAYADQSPYASTYGGYVSPPWSPGGPPPRPPQWPPGPHEAS 73
SG G G Q P +DPAYA Q+PYA Y P
Sbjct 33 SGLGGRGEQSGWGYPGYSDPAYASQTPYAPPYQAPPGP---------------------R 71
Query 74 PTQQLPQYWQYDQPP--PGGFPPDGLTPPPPQG----------PRTPRWLWFAAGSAVLL 121
PT++LP Y Y Q P G +PP PPQG P++PRWLW AG AVL
Sbjct 72 PTERLPAYSPYGQDPYATGQYPPQ----YPPQGYGSEPPPPEDPKSPRWLWIVAGLAVLT 127
Query 122 VVALVIALVIANGSVKKQTAIEPLPPMPGPS-PT-RPTTTT--PTPPSPSAAPAPT---- 173
V+ LVIALVI N S ++ AI PLP P PS PT PTTT+ PT PS PAPT
Sbjct 128 VIGLVIALVIVNSSRQQPVAITPLPSAPEPSYPTPAPTTTSRPPTRPSTPVLPAPTLPSA 187
Query 174 -TTTGTPSETVAGAMQTVVYDVTGEGRAISITYMDSGNVIQTEFNVALPWRKEVSLSKSS 232
TT TV GA VVY V G GRAI+ITY+D+G ++QTEFNV LPW KEVSL
Sbjct 188 PRTTPPTEPTVPGATDAVVYTVDGNGRAINITYVDTGGLLQTEFNVMLPWSKEVSLPAPG 247
Query 233 LHPASVTIVNIGHNVTCSVTVAGVQVRQRTGAGLTIC 269
AS++I+N+G VTCS+TV GVQ+ +RTGAGLTIC
Sbjct 248 EGSASISIINVGREVTCSITVNGVQLDERTGAGLTIC 284
>gi|145223134|ref|YP_001133812.1| hypothetical protein Mflv_2547 [Mycobacterium gilvum PYR-GCK]
gi|145215620|gb|ABP45024.1| putative conserved proline rich membrane protein [Mycobacterium
gilvum PYR-GCK]
Length=259
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 114/249 (46%), Positives = 148/249 (60%), Gaps = 28/249 (11%)
Query 31 ADPAYADQSPYASTYGGYVSPPWSPGGPPPRPPQWPPGPHEASPTQQLPQYWQYDQPPPG 90
+DPAYA Q+PY PP+ P R P +P P+ +PT QY P
Sbjct 25 SDPAYASQTPYG--------PPYQ---PTERLPAYP--PYGYNPTADPNATGQY----PP 67
Query 91 GFPPDGLTPPPPQGPRTPRWLWFAAGSAVLLVVALVIALVIANGSVKKQTAIEPLPPMPG 150
+PP G P PPQ P++PRWLW AG AV++V+ LVIALVI N S +++T + PLP P
Sbjct 68 QYPPHGPGPEPPQDPKSPRWLWIVAGVAVVMVIGLVIALVIVNSS-RQETVVAPLPAAPE 126
Query 151 PSPTRPTTTTPTPPSPS----------AAPAPTTTTGTPSETVAGAMQTVVYDVTGEGRA 200
PS T + +PT S + P PT + TP T GA +V+Y V G GRA
Sbjct 127 PSMTTSSPRSPTTTSRAPRTTTRPTTPLLPLPTLPSTTPDPTTPGATDSVIYTVEGLGRA 186
Query 201 ISITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHPASVTIVNIGHNVTCSVTVAGVQVRQ 260
I++TY+D+G ++QTEFNV LPW KEV+L + AS+TI+N+G VTCS+TV G Q
Sbjct 187 INLTYVDTGGLLQTEFNVMLPWTKEVALPRPGESSASITIINVGREVTCSITVNGTQRES 246
Query 261 RTGAGLTIC 269
RTGAGLTIC
Sbjct 247 RTGAGLTIC 255
>gi|315443591|ref|YP_004076470.1| hypothetical protein Mspyr1_19760 [Mycobacterium sp. Spyr1]
gi|315261894|gb|ADT98635.1| hypothetical protein Mspyr1_19760 [Mycobacterium sp. Spyr1]
Length=257
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 114/249 (46%), Positives = 148/249 (60%), Gaps = 28/249 (11%)
Query 31 ADPAYADQSPYASTYGGYVSPPWSPGGPPPRPPQWPPGPHEASPTQQLPQYWQYDQPPPG 90
+DPAYA Q+PY PP+ P R P +P P+ +PT QY P
Sbjct 23 SDPAYASQTPYG--------PPYQ---PTERLPAYP--PYGYNPTADPNATGQY----PP 65
Query 91 GFPPDGLTPPPPQGPRTPRWLWFAAGSAVLLVVALVIALVIANGSVKKQTAIEPLPPMPG 150
+PP G P PPQ P++PRWLW AG AV++V+ LVIALVI N S +++T + PLP P
Sbjct 66 QYPPHGPGPEPPQDPKSPRWLWIVAGVAVVMVIGLVIALVIVNSS-RQETVVAPLPAAPE 124
Query 151 PSPTRPTTTTPTPPSPS----------AAPAPTTTTGTPSETVAGAMQTVVYDVTGEGRA 200
PS T + +PT S + P PT + TP T GA +V+Y V G GRA
Sbjct 125 PSMTTSSPRSPTTTSRAPRTTTRPTTPLLPLPTLPSTTPDPTTPGATDSVIYTVEGLGRA 184
Query 201 ISITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHPASVTIVNIGHNVTCSVTVAGVQVRQ 260
I++TY+D+G ++QTEFNV LPW KEV+L + AS+TI+N+G VTCS+TV G Q
Sbjct 185 INLTYVDTGGLLQTEFNVMLPWTKEVALPRPGESSASITIINVGREVTCSITVNGTQRES 244
Query 261 RTGAGLTIC 269
RTGAGLTIC
Sbjct 245 RTGAGLTIC 253
>gi|333990038|ref|YP_004522652.1| proline rich membrane protein [Mycobacterium sp. JDM601]
gi|333486006|gb|AEF35398.1| proline rich membrane protein [Mycobacterium sp. JDM601]
Length=258
Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 119/277 (43%), Positives = 148/277 (54%), Gaps = 27/277 (9%)
Query 1 MNDPRRPQRFGPPLSGYGPTGPQVPPNPPTADPAYADQSPYASTYGGYVSPPWSPGGPPP 60
M DP RP+ P G T PP DPAYA Q P +Y P G PP
Sbjct 1 MTDPYRPEDSDRPWQRSGATEQSPFGFPPHVDPAYAGQLP---SY---------PAGYPP 48
Query 61 RPPQWPPGPHEASPTQQLP-QYWQYDQPPPGGFPPDGLTPPPPQGP--RTPRWLWFAAGS 117
+ PT QLP Q+W+ QP G R P WLW AG+
Sbjct 49 Q---------ATDPTAQLPRQHWEPAQPGGGPGGGVPPGGEGGPPEPPRFPNWLWLVAGA 99
Query 118 AVLLVVALVIALVIANGSVKKQ---TAIEPLPPMPGPSPTRPTTTTPTPPSPSAAPAPTT 174
AVLLVV +VIALVIANGS + T + PLP P + T TT PP SA +
Sbjct 100 AVLLVVGMVIALVIANGSGRNSATVTPVSPLPTAPSTPIPKRTPTTTPPPRSSAPSTTPS 159
Query 175 TTGTPSETVAGAMQTVVYDVTGEGRAISITYMDSGNVIQTEFNVALPWRKEVSLSKSSLH 234
T + T AG +T+VY VTG GRA+SI Y+D V++TEFNVALPW K+V+L+ +
Sbjct 160 TPPPTTSTTAGVPETIVYSVTGTGRALSIAYIDDDGVLKTEFNVALPWSKQVTLTPPATK 219
Query 235 PASVTIVNIGHNVTCSVTVAGVQVRQRTGAGLTICDA 271
A+VT+VN G +TCS++V G QVRQRTG+ LT+C A
Sbjct 220 AAAVTVVNFGEQITCSLSVDGAQVRQRTGSILTVCAA 256
>gi|118469241|ref|YP_888980.1| hypothetical protein MSMEG_4720 [Mycobacterium smegmatis str.
MC2 155]
gi|118170528|gb|ABK71424.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=267
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 122/250 (49%), Positives = 153/250 (62%), Gaps = 27/250 (10%)
Query 32 DPAYADQSPYASTYGGYVSPPWSPGGPPPRPPQWPPGPHEASPTQQLPQY--WQYD---- 85
DPAYA+Q+PY GGY + P +P PP PQ PTQQ+P Y + YD
Sbjct 28 DPAYANQTPYG---GGYPAAP-NPVSNPPANPQ---------PTQQMPAYPPYGYDPYAS 74
Query 86 ----QPPPGGFPPDGLTPPPPQGPRTPR-WLWFAAGSAVLLVVALVIALVIANGSVKKQT 140
GGFPP G P P R PR WLW A AVL+VV LVIALVIANGS +++T
Sbjct 75 GQYGSGQYGGFPPAGPPPEPEPEDREPRMWLWVLAALAVLVVVGLVIALVIANGS-RQET 133
Query 141 AIEPLPPMPGPSPTRPTTTTPTPPSPSAAPAPTTTTGTPSE-TVAGAMQTVVYDVTGEGR 199
+ P P P PS + PTTT P+P T P+ T GA +TVVY+V GEGR
Sbjct 134 VVAP-PVSPQPSFSEPTTTAPSPSRTPRPVPVPPRTSAPTSPTTPGATETVVYEVAGEGR 192
Query 200 AISITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHPASVTIVNIGHNVTCSVTVAGVQVR 259
AI+ITY+D+G ++QTEFNV LPW K+V L + + ASV+++N G V+C+VTV GVQ +
Sbjct 193 AINITYLDTGGMLQTEFNVLLPWSKQVELPEPAKETASVSVLNFGPEVSCTVTVDGVQTQ 252
Query 260 QRTGAGLTIC 269
RTG+GLTIC
Sbjct 253 HRTGSGLTIC 262
>gi|108800602|ref|YP_640799.1| hypothetical protein Mmcs_3636 [Mycobacterium sp. MCS]
gi|119869741|ref|YP_939693.1| hypothetical protein Mkms_3709 [Mycobacterium sp. KMS]
gi|126436218|ref|YP_001071909.1| hypothetical protein Mjls_3641 [Mycobacterium sp. JLS]
gi|108771021|gb|ABG09743.1| putative conserved proline rich membrane protein [Mycobacterium
sp. MCS]
gi|119695830|gb|ABL92903.1| putative conserved proline rich membrane protein [Mycobacterium
sp. KMS]
gi|126236018|gb|ABN99418.1| putative conserved proline rich membrane protein [Mycobacterium
sp. JLS]
Length=253
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 92/174 (53%), Positives = 117/174 (68%), Gaps = 17/174 (9%)
Query 106 RTPRWLWFAAGSAVLLVVALVIALVIANGSVKKQTAIEPLPPMPGPSPT---RPTTTT-- 160
++P WLW AG+ VLLVVALVIALVI N S ++QT + P P MP P+ T RPTTT+
Sbjct 83 KSPMWLWVLAGAVVLLVVALVIALVITNSS-RQQTVVAPAPSMPEPTATTSERPTTTSRI 141
Query 161 -----PTPPSPSAAPAPTTTTGTPSETVAGAMQTVVYDVTGEGRAISITYMDSGNVIQTE 215
P P +P ++ AP+T PSE+ +TV YDV GEGR I+ITY D+G V QTE
Sbjct 142 PTPVVPLPTTPRSSTAPSTPP--PSEST----ETVTYDVVGEGRVINITYTDTGGVPQTE 195
Query 216 FNVALPWRKEVSLSKSSLHPASVTIVNIGHNVTCSVTVAGVQVRQRTGAGLTIC 269
FNVALPW K+V L + A ++I+N+G +VTCSVT+ G QV Q TG+GLT C
Sbjct 196 FNVALPWSKQVELPSPARSSARISIINVGRDVTCSVTINGAQVEQNTGSGLTFC 249
>gi|169628629|ref|YP_001702278.1| hypothetical protein MAB_1539c [Mycobacterium abscessus ATCC
19977]
gi|169240596|emb|CAM61624.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=247
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/204 (33%), Positives = 100/204 (50%), Gaps = 10/204 (4%)
Query 68 GPHEASPTQQLPQYWQYDQPPPGGFPPDGLTPPPPQGPRTPRWLWFAAGSAVLLVVALVI 127
G + + T LPQ QY Q G + P P PP+ T WLW A+++++AL+I
Sbjct 48 GTAQPNQTAVLPQ--QYGQQY-GSYGPAPKDPEPPRRSNT-FWLWVVGIGALVVIIALII 103
Query 128 ALVIANGSVKKQ--TAIEPLPPMPGPSPTRPTTTTPTPPSPSAAPAPTTTTGTPSETVAG 185
LV+ +Q T + + T P PS + P P P++
Sbjct 104 TLVLLIQREDQQPPTVVSSPTTRTSTTTAPSQPTIPPIPSFTIPPIPVNP---PTQGSQA 160
Query 186 AMQTVVYDVTGEGRAISITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHPASVTIVNIGH 245
A ++VVY+V G G A+++TY D+ +Q EFNV LPWRKEV L+ + A V + H
Sbjct 161 ATESVVYEVGGRGPALNVTYFDASGSLQMEFNVKLPWRKEVKLNTEQVTNAVVIAADFSH 220
Query 246 NVTCSVTVAGVQVRQRTGAGLTIC 269
+V+C++ V G Q + T + C
Sbjct 221 DVSCTLLVNGAQ-KSATSGKMATC 243
>gi|126434050|ref|YP_001069741.1| hypothetical protein Mjls_1449 [Mycobacterium sp. JLS]
gi|126233850|gb|ABN97250.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=282
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/293 (28%), Positives = 111/293 (38%), Gaps = 47/293 (16%)
Query 9 RFGPPLSGYGPTGPQVPPNPPTADPAYADQSPYASTYGGYVSPPWS--PGGPPPRPPQWP 66
R P S Y + P P Y D+ YA Y G P + G W
Sbjct 3 RHYSPHSPYTSARTERLDRPRADQPGYDDRPSYAP-YSGADHPGYRHYADGHSDYGQSWD 61
Query 67 PGPHEASPTQQLPQYWQYDQPPPGGFPPDGLTPPPPQGPRTPRWLWFAAGSAVLLVVALV 126
G + A+ + P Y Y+ D RW W A + +L+VA++
Sbjct 62 SGRYAATDVED-PDYEDYEDYDAYAATIDS------------RWKWIAGVAGAVLLVAVI 108
Query 127 IALVIA----NGSVKK-----------QTAIEPL-------PPMPGPSPTRPTTTTPTPP 164
LVI +GSV TA P PP +P TT TPT P
Sbjct 109 CTLVILGGGDSGSVSATVGTSAQSRPPATATAPHDTSAALPPPTASLAPETITTVTPTAP 168
Query 165 ---SPSAAPAPTTTTGTPSETVAGAMQTVVYDVTGEGRAI---SITYMDSGNVIQTEFNV 218
S SA P P + P A + + Y VTG + I ++ Y D +QTE NV
Sbjct 169 PSPSASATPDPAPSAVAPPPPAAATPRAITYTVTGNRQLIDFVTVIYTDQQGALQTEVNV 228
Query 219 ALPWRKEVSLSKSSLHPASVTIVNIGHNVTCSVTVA--GVQVRQRTGAGLTIC 269
+LPW K V L + SVT ++G + C++T A V Q + + C
Sbjct 229 SLPWSKTVVLDP-GVELKSVTATSVGGQLNCAITDAAGAALVTQNNNSMIATC 280
>gi|108798366|ref|YP_638563.1| hypothetical protein Mmcs_1395 [Mycobacterium sp. MCS]
gi|119867463|ref|YP_937415.1| hypothetical protein Mkms_1413 [Mycobacterium sp. KMS]
gi|108768785|gb|ABG07507.1| hypothetical protein Mmcs_1395 [Mycobacterium sp. MCS]
gi|119693552|gb|ABL90625.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=282
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 78/276 (29%), Positives = 109/276 (40%), Gaps = 48/276 (17%)
Query 27 NPPTAD-PAYADQSPYASTYGGYVSPPWS--PGGPPPRPPQWPPGPHEASPTQQLPQYWQ 83
+ P AD P Y D+ YA Y G P + G W G + A+ + P +
Sbjct 20 DRPRADQPGYDDRPSYAP-YSGADHPGYRHYADGQSDYGQSWASGRYAAADVED-PDFED 77
Query 84 YDQPPPGGFPPDGLTPPPPQGPRTPRWLWFAAGSAVLLVVALVIALVIA----NGSVKK- 138
Y+ D RW W A + +L+VA++ LVI +GSV
Sbjct 78 YEDYDAYAAAIDS------------RWKWIAGVAGAVLLVAVICTLVILGGGDSGSVSAT 125
Query 139 ----------QTAIEPL-------PPMPGPSPTRPTTTTPTPP---SPSAAPAPTTTTGT 178
TA P PP +P TT TPT P S SA P P +
Sbjct 126 VGTSAQSRPPATATAPHDTSAALPPPTASLAPETITTVTPTAPPSPSASATPDPAPSAVA 185
Query 179 PSETVAGAMQTVVYDVTGEGRAI---SITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHP 235
P A + + Y VTG + I ++ Y D +QTE NV+LPW K V L +
Sbjct 186 PPPPAAATPRAITYTVTGNRQLIDFVTVIYTDQQGALQTEVNVSLPWSKTVVLDP-GVEL 244
Query 236 ASVTIVNIGHNVTCSVTVA--GVQVRQRTGAGLTIC 269
SVT ++G + C++T A V Q + + C
Sbjct 245 KSVTATSVGGQLNCAITDAAGAALVTQNNNSMIATC 280
>gi|169627621|ref|YP_001701270.1| hypothetical protein MAB_0517 [Mycobacterium abscessus ATCC 19977]
gi|169239588|emb|CAM60616.1| Hypothetical protein MAB_0517 [Mycobacterium abscessus]
Length=226
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/230 (26%), Positives = 93/230 (41%), Gaps = 46/230 (20%)
Query 76 QQLPQ-YWQYDQPPPGGFPPDGLTPPPPQGPRTPRWLWFAAGSAVLLVVALVIALVIANG 134
QQ PQ W D+P P P+ P+ P+W W AG +VL V+A+ + ++
Sbjct 7 QQYPQEQWPVDEPIPY-----------PEDPKPPKWPWIVAGISVLAVLAIALTSILVIT 55
Query 135 SVKKQTAIEPLPPMPGPSPTRPT-----------------------------TTTPTPPS 165
+ A + P + T P TTT PP
Sbjct 56 RRTEVAAPTTVTVTPSTTWTGPNDVPLPSITTTEPPPPSPPPPNPSTGVETPTTTEAPPV 115
Query 166 PSA--APAPTTTTGTPSETVAGAMQTVVYDVTGEGRAISITYMDSGNVIQTEFNVALPWR 223
P+ AP P TTG ++V Y V G G +++ YM ++ N++ PW
Sbjct 116 PTTTEAPQPVPTTGQGPGGSGHGSKSVTYSVGGSGSQVNVAYMTDTEYVRVA-NISQPWA 174
Query 224 KEVSLSKSSLHPASVTIVNIGH-NVTCSVTVAGVQVRQRTGAGLTICDAP 272
V+ ++ P + + +G ++CS+TV GV V + T +C AP
Sbjct 175 VTVTRTQRD-KPLIMNVTMVGEGTISCSITVDGVTVTESTDVFAVVCQAP 223
>gi|315445549|ref|YP_004078428.1| hypothetical protein Mspyr1_40060 [Mycobacterium sp. Spyr1]
gi|315263852|gb|ADU00594.1| hypothetical protein Mspyr1_40060 [Mycobacterium sp. Spyr1]
Length=282
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/218 (28%), Positives = 90/218 (42%), Gaps = 42/218 (19%)
Query 73 SPTQQLPQYWQY---DQPPPGGFPPDGLTPPP------PQGPRTPRWLWFA-AGSAVLLV 122
S T LP Y Y D + D T + RW+W A A+L V
Sbjct 46 SDTDALPPYRDYRPGDHDAHDAYDSDDYTDVENYDEYLDEARIDRRWMWIAGVAGAILFV 105
Query 123 VALVIALVIA---NGSVKKQTAIEPLPPMPGPSPTRPTTTTPTPPSPSAAPAPTTTTGTP 179
+ +++++ +GSV A PLP P P+ + P+ + PA T TT TP
Sbjct 106 AVITVSMILGGGDSGSVSATVA-APLPTSSAPEPSAAPSPRAAAPASPSLPAETVTTVTP 164
Query 180 S-ETVAGAMQ---------------------TVVYDVTGEGRA----ISITYMDSGNVIQ 213
+ ET A A TV Y +TG RA ++I Y D ++
Sbjct 165 TAETPAPAPVAPSPLLPAPQAAPPPAAAAPGTVTYRITG-NRALLDLVTIIYTDEQGALK 223
Query 214 TEFNVALPWRKEVSLSKSSLHPASVTIVNIGHNVTCSV 251
T+ N ALPW K V L+ + +SVT ++ + C++
Sbjct 224 TDVNAALPWTKTVVLNP-GVTLSSVTATSVSGQLNCAI 260
>gi|145225252|ref|YP_001135930.1| hypothetical protein Mflv_4674 [Mycobacterium gilvum PYR-GCK]
gi|145217738|gb|ABP47142.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=282
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/238 (27%), Positives = 97/238 (41%), Gaps = 44/238 (18%)
Query 73 SPTQQLPQYWQY---DQPPPGGFPPDGLTPPP------PQGPRTPRWLWFA-AGSAVLLV 122
S T LP Y Y D + D T + RW+W A A+L V
Sbjct 46 SDTDALPPYRDYRPGDHDAHDAYDSDDYTDVENYDEYLDEARIDRRWMWIAGVAGAILFV 105
Query 123 VALVIALVIA---NGSVKKQTAIEPLPPMPGPSPTRPTTTTPTPPSPSAAPAPTTTTGTP 179
+ +++++ +GSV A PLP P P+ + P+ + PA T TT TP
Sbjct 106 AVITVSMILGGGDSGSVSATVA-APLPTSSAPEPSAAPSPRAAAPASPSLPAETVTTVTP 164
Query 180 S-ETVAGAMQ---------------------TVVYDVTGEGRA----ISITYMDSGNVIQ 213
+ ET A A TV Y +TG RA ++I Y D ++
Sbjct 165 TAETPAPAPVAPSPLLPAPQAAPPPAAAAPGTVTYRITG-NRALLDLVTIIYTDEQGALK 223
Query 214 TEFNVALPWRKEVSLSKSSLHPASVTIVNIGHNVTCSVTVAG--VQVRQRTGAGLTIC 269
T+ N ALPW K V L+ + +SVT ++ + C++ A + Q + +T C
Sbjct 224 TDVNAALPWTKTVVLNP-GVTLSSVTATSVSGQLNCAILDANGSLIAVQNNNSIITNC 280
>gi|296169015|ref|ZP_06850680.1| MmpS3 protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295896312|gb|EFG75969.1| MmpS3 protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=239
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/189 (31%), Positives = 79/189 (42%), Gaps = 41/189 (21%)
Query 118 AVLLVVALVIALVIANGSVKKQTAIEPLPPMPGPSPTRPTTTTPTPPSPSAAPAPTTTTG 177
AV+ V A+ A++I +G A + P P P + P TT + P PSA P+P+ T
Sbjct 53 AVVAVGAIATAVIINSGDSASTKAT--IGPAPQPVTSAPATTKASAP-PSAQPSPSVTQQ 109
Query 178 TPSETVAGAM--------------------------------QTVVYDVTGEGRA---IS 202
P ETV +TVVY VTG + ++
Sbjct 110 LPPETVTTVTTPSAAPSLAPTGTPTAAPPLTLTPPPAAALNPRTVVYSVTGSKQLLDLVN 169
Query 203 ITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHPASVTIVNIGHNVTCSVTVAGVQV--RQ 260
I Y D QTEFNV+LPW K V L+ +P+ V G + CS+ A Q+ Q
Sbjct 170 IVYTDGQGRSQTEFNVSLPWTKAVILNPGIQNPSVVATSFYGR-LNCSIVNAAGQLVAAQ 228
Query 261 RTGAGLTIC 269
A L C
Sbjct 229 ANNASLASC 237
>gi|120402792|ref|YP_952621.1| hypothetical protein Mvan_1793 [Mycobacterium vanbaalenii PYR-1]
gi|119955610|gb|ABM12615.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=260
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 60/232 (26%), Positives = 95/232 (41%), Gaps = 52/232 (22%)
Query 69 PHEASPTQQLP----QYWQYDQPPP--GGFPPDGLTPPP-------------PQGPRTPR 109
P+ +PT+++ +Y YD P G D L P P + R
Sbjct 10 PYSLTPTERIRSPRGRYGSYDDDPDRYGDLDTDALPPFPGDDYDAEDYDGYIDEERLDRR 69
Query 110 WLWFAAGSAVLLVVALVIALVIA----NGSVKKQTAIEPLPPMPGPSPTRPTTTTPTPPS 165
W+W A + +L VA++ A +I +GSV T PLP P P+ P+
Sbjct 70 WMWIAGVAGAILFVAVITASMILGGGDSGSVSA-TVASPLPSSSAPEPSAAPAPRVAAPA 128
Query 166 PSAAPAPTTTTGTPSETVAGAMQ----------------------TVVYDVTGEGRA--- 200
+ PA T TT TP+ + TV Y +TG RA
Sbjct 129 VPSLPAETVTTVTPTAEIPTPAPTTPAPLLPAPQAAPPPASAAPGTVTYRITGN-RALLD 187
Query 201 -ISITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHPASVTIVNIGHNVTCSV 251
+++ Y D+ +QT+ N ALPW K + L+ + +SVT ++ + C++
Sbjct 188 LVTVIYTDAQGALQTDVNAALPWSKTIVLNP-GVTLSSVTATSMSGQLNCAI 238
>gi|118470889|ref|YP_886299.1| MmpS3 protein [Mycobacterium smegmatis str. MC2 155]
gi|118172176|gb|ABK73072.1| MmpS3 protein [Mycobacterium smegmatis str. MC2 155]
Length=274
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 80/200 (40%), Gaps = 36/200 (18%)
Query 103 QGPRTPRWLWFAAGSAVLLVVALVIALVIA------NGSVKKQTAIEPLPPMPGPSPTRP 156
+ P RW+W A + +L+VA++ +V +GSV A P + +
Sbjct 76 EEPLDRRWIWVAGVAGAILLVAVICTVV--ILGGGDSGSVSATVADPTQTSQPATTAPQD 133
Query 157 TTTTPT---PPSPSAAPAPTTTTGTPSETVAGAM-------------------QTVVYDV 194
++TP P +PS +P TT A + V Y V
Sbjct 134 ASSTPRPLPPVAPSLSPETVTTVTPSPTAPAATAEPAPVAPPAEAAPPPAVNPRAVTYTV 193
Query 195 TGEGRAI---SITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHPASVTIVNIGHNVTCSV 251
TG + I +I Y D +QT+ NVALPW K V L + SVT ++ + CS+
Sbjct 194 TGNRQLIDLVTIVYTDERGALQTDINVALPWTKTVVLDP-GVELKSVTATSVAGQLNCSI 252
Query 252 TVA--GVQVRQRTGAGLTIC 269
T A V V Q + C
Sbjct 253 TDAAGNVLVNQANNTMIATC 272
>gi|118464384|ref|YP_883305.1| hypothetical protein MAV_4157 [Mycobacterium avium 104]
gi|118165671|gb|ABK66568.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=245
Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/87 (34%), Positives = 45/87 (52%), Gaps = 6/87 (6%)
Query 188 QTVVYDVTGEGRA---ISITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHPASVTIVNIG 244
+TVVY V+G + +++ Y D+ V QTEFNV+LPW K V L + + SV +
Sbjct 158 RTVVYSVSGSKQLLDLVNVVYTDAHGVPQTEFNVSLPWSKVVVL-EPGVQTESVVATSFY 216
Query 245 HNVTCSVTVAGVQ--VRQRTGAGLTIC 269
++CS+ A Q V + + C
Sbjct 217 GRLSCSIFNAAGQRVVASANASNMATC 243
>gi|336459522|gb|EGO38459.1| Mycobacterium membrane protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=251
Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/87 (34%), Positives = 45/87 (52%), Gaps = 6/87 (6%)
Query 188 QTVVYDVTGEGRA---ISITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHPASVTIVNIG 244
+TVVY V+G + +++ Y D+ V QTEFNV+LPW K V L + + SV +
Sbjct 164 RTVVYSVSGSKQLLDLVNVVYTDAHGVPQTEFNVSLPWSKVVVL-EPGVQTESVVATSFY 222
Query 245 HNVTCSVTVAGVQ--VRQRTGAGLTIC 269
++CS+ A Q V + + C
Sbjct 223 GRLSCSIFNAAGQRVVASANASNMATC 249
>gi|41409408|ref|NP_962244.1| hypothetical protein MAP3310 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398239|gb|AAS05860.1| hypothetical protein MAP_3310 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=191
Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/44 (48%), Positives = 29/44 (66%), Gaps = 3/44 (6%)
Query 188 QTVVYDVTGEGRA---ISITYMDSGNVIQTEFNVALPWRKEVSL 228
+TVVY V+G + +++ Y D+ V QTEFNV+LPW K V L
Sbjct 104 RTVVYSVSGSKQLLDLVNVVYTDAHGVPQTEFNVSLPWSKVVVL 147
>gi|262204289|ref|YP_003275497.1| hypothetical protein Gbro_4471 [Gordonia bronchialis DSM 43247]
gi|262087636|gb|ACY23604.1| hypothetical protein Gbro_4471 [Gordonia bronchialis DSM 43247]
Length=262
Score = 40.4 bits (93), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/75 (34%), Positives = 37/75 (50%), Gaps = 8/75 (10%)
Query 190 VVYDVTGEGRAISITYMDSGN--VIQTEFNVALPWRKEVSLSKSSLHPASVTIVNIGHNV 247
V Y +TG G I++TY SG I N PW + V ++ + A +T + I NV
Sbjct 179 VTYQLTGGGSVITVTYRASGRPGFIA---NTGTPWSESVRVNGGT---AEITAIVISGNV 232
Query 248 TCSVTVAGVQVRQRT 262
TC++ G Q+ T
Sbjct 233 TCTIMQDGQQISSAT 247
>gi|145223538|ref|YP_001134216.1| hypothetical protein Mflv_2951 [Mycobacterium gilvum PYR-GCK]
gi|145216024|gb|ABP45428.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=268
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/73 (32%), Positives = 40/73 (55%), Gaps = 4/73 (5%)
Query 190 VVYDVTGE---GRAISITYMDSGNVIQTEFNVALPWRKEVS-LSKSSLHPASVTIVNIGH 245
V Y VTG G I++TY+D+ +T+ NV +PW V+ +S+S + + + +
Sbjct 183 VTYSVTGTKAPGDIITVTYIDASGRSRTQRNVYIPWSLTVTPISQSEVGSVQASSLFLVS 242
Query 246 NVTCSVTVAGVQV 258
+ CS+T + QV
Sbjct 243 KLNCSITTSDGQV 255
>gi|343924446|ref|ZP_08763995.1| hypothetical protein GOALK_016_00440 [Gordonia alkanivorans NBRC
16433]
gi|343765590|dbj|GAA10921.1| hypothetical protein GOALK_016_00440 [Gordonia alkanivorans NBRC
16433]
Length=257
Score = 40.0 bits (92), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/84 (29%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query 189 TVVYDVTGEGRAISITYMDSGNVIQTEFNVALPWRKEVSLSKSSLHPASVTIVNIGHNVT 248
TVVY +TG G +++++ G PW + V++ + A+++ + + VT
Sbjct 172 TVVYQLTGNGDVVALSFSKGGGSPTVIAATGSPWSQRVNVKGNK---ATLSAIVVRGPVT 228
Query 249 CSVTVAGVQVRQRTGAGLTI-CDA 271
CS+ V G Q+ T G T+ C A
Sbjct 229 CSILVDGEQLATATSNGGTLNCTA 252
>gi|336461922|gb|EGO40775.1| Mycobacterium membrane protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=320
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/71 (31%), Positives = 38/71 (54%), Gaps = 4/71 (5%)
Query 188 QTVVYDVTGE---GRAISITYMDSGNVIQTEFNVALPWRKEVS-LSKSSLHPASVTIVNI 243
+ V Y VTG G IS+TY+D+ +T+ NV +PW V+ +S+S + + +
Sbjct 233 RQVTYSVTGTKAPGDIISVTYVDASGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFR 292
Query 244 GHNVTCSVTVA 254
+ CS+T +
Sbjct 293 VSRLNCSITTS 303
>gi|308370942|ref|ZP_07423296.2| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu003]
gi|308374522|ref|ZP_07436359.2| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu006]
gi|308379144|ref|ZP_07485223.2| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu010]
gi|308330196|gb|EFP19047.1| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu003]
gi|308341601|gb|EFP30452.1| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu006]
gi|308357969|gb|EFP46820.1| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu010]
gi|339295112|gb|AEJ47223.1| membrane protein mmpS3 [Mycobacterium tuberculosis CCDC5079]
gi|339298733|gb|AEJ50843.1| membrane protein mmpS3 [Mycobacterium tuberculosis CCDC5180]
Length=268
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/69 (32%), Positives = 37/69 (54%), Gaps = 4/69 (5%)
Query 190 VVYDVTGE---GRAISITYMDSGNVIQTEFNVALPWRKEVS-LSKSSLHPASVTIVNIGH 245
V Y VTG G IS+TY+D+ +T+ NV +PW V+ +S+S + + +
Sbjct 183 VTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVS 242
Query 246 NVTCSVTVA 254
+ CS+T +
Sbjct 243 KLNCSITTS 251
>gi|108800262|ref|YP_640459.1| hypothetical protein Mmcs_3296 [Mycobacterium sp. MCS]
gi|119869390|ref|YP_939342.1| hypothetical protein Mkms_3358 [Mycobacterium sp. KMS]
gi|126435885|ref|YP_001071576.1| hypothetical protein Mjls_3307 [Mycobacterium sp. JLS]
gi|108770681|gb|ABG09403.1| putative conserved membrane protein MmpS3 [Mycobacterium sp.
MCS]
gi|119695479|gb|ABL92552.1| putative conserved membrane protein MmpS3 [Mycobacterium sp.
KMS]
gi|126235685|gb|ABN99085.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=297
Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/86 (32%), Positives = 45/86 (53%), Gaps = 6/86 (6%)
Query 190 VVYDVTGE---GRAISITYMDSGNVIQTEFNVALPWRKEVS-LSKSSLHPASVTIVNIGH 245
V Y VTG G I++TY+D+ +T+ NV +PW V+ +S+S + + + +
Sbjct 212 VTYSVTGTKAPGDIITVTYVDASGRRRTQRNVYIPWSLTVTPISQSEVGSVQASSLFLVS 271
Query 246 NVTCSVTVA-GVQVRQRTG-AGLTIC 269
+ CS+T + G + TG A T C
Sbjct 272 KLNCSITTSDGTVLSSNTGNAAQTSC 297
>gi|308375809|ref|ZP_07445176.2| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu007]
gi|308380295|ref|ZP_07489439.2| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu011]
gi|308345008|gb|EFP33859.1| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu007]
gi|308361903|gb|EFP50754.1| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu011]
Length=229
Score = 36.2 bits (82), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/69 (32%), Positives = 37/69 (54%), Gaps = 4/69 (5%)
Query 190 VVYDVTGE---GRAISITYMDSGNVIQTEFNVALPWRKEVS-LSKSSLHPASVTIVNIGH 245
V Y VTG G IS+TY+D+ +T+ NV +PW V+ +S+S + + +
Sbjct 144 VTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVS 203
Query 246 NVTCSVTVA 254
+ CS+T +
Sbjct 204 KLNCSITTS 212
Lambda K H
0.312 0.133 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 426144143792
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40