BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2511
Length=215
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609648|ref|NP_217027.1| oligoribonuclease [Mycobacterium tu... 438 2e-121
gi|240170995|ref|ZP_04749654.1| oligoribonuclease [Mycobacterium... 382 2e-104
gi|183983834|ref|YP_001852125.1| oligoribonuclease Orn [Mycobact... 379 2e-103
gi|296170420|ref|ZP_06852008.1| oligoribonuclease [Mycobacterium... 377 7e-103
gi|118619032|ref|YP_907364.1| oligoribonuclease [Mycobacterium u... 375 2e-102
gi|342857899|ref|ZP_08714555.1| oligoribonuclease [Mycobacterium... 370 1e-100
gi|254823127|ref|ZP_05228128.1| oligoribonuclease [Mycobacterium... 369 2e-100
gi|15827135|ref|NP_301398.1| oligoribonuclease [Mycobacterium le... 366 2e-99
gi|118464888|ref|YP_880896.1| oligoribonuclease [Mycobacterium a... 365 2e-99
gi|41408418|ref|NP_961254.1| oligoribonuclease [Mycobacterium av... 365 3e-99
gi|118473234|ref|YP_888984.1| oligoribonuclease [Mycobacterium s... 347 7e-94
gi|120405054|ref|YP_954883.1| oligoribonuclease [Mycobacterium v... 345 3e-93
gi|333990034|ref|YP_004522648.1| oligoribonuclease Orn [Mycobact... 338 2e-91
gi|145223130|ref|YP_001133808.1| oligoribonuclease [Mycobacteriu... 336 1e-90
gi|108800606|ref|YP_640803.1| oligoribonuclease [Mycobacterium s... 334 5e-90
gi|169628623|ref|YP_001702272.1| oligoribonuclease [Mycobacteriu... 328 3e-88
gi|315443587|ref|YP_004076466.1| oligoribonuclease (3'->5' exori... 327 6e-88
gi|54023254|ref|YP_117496.1| oligoribonuclease [Nocardia farcini... 320 9e-86
gi|312140423|ref|YP_004007759.1| exonuclease [Rhodococcus equi 1... 318 3e-85
gi|229780998|ref|YP_001103540.2| oligoribonuclease [Saccharopoly... 314 5e-84
gi|111018425|ref|YP_701397.1| oligoribonuclease [Rhodococcus jos... 314 6e-84
gi|226360543|ref|YP_002778321.1| oligoribonuclease [Rhodococcus ... 311 4e-83
gi|333918708|ref|YP_004492289.1| putative oligoribonuclease [Amy... 308 5e-82
gi|343927571|ref|ZP_08767041.1| oligoribonuclease [Gordonia alka... 306 9e-82
gi|258652005|ref|YP_003201161.1| exonuclease RNase T and DNA pol... 304 6e-81
gi|256375198|ref|YP_003098858.1| oligoribonuclease [Actinosynnem... 304 7e-81
gi|145593678|ref|YP_001157975.1| oligoribonuclease [Salinispora ... 303 1e-80
gi|159036666|ref|YP_001535919.1| oligoribonuclease [Salinispora ... 301 5e-80
gi|226307350|ref|YP_002767310.1| oligoribonuclease [Rhodococcus ... 300 9e-80
gi|326382785|ref|ZP_08204475.1| oligoribonuclease [Gordonia neof... 298 3e-79
gi|325675967|ref|ZP_08155650.1| oligoribonuclease [Rhodococcus e... 296 1e-78
gi|257056841|ref|YP_003134673.1| oligoribonuclease (3'->5' exori... 296 2e-78
gi|238063163|ref|ZP_04607872.1| oligoribonuclease [Micromonospor... 295 2e-78
gi|296139064|ref|YP_003646307.1| exonuclease RNase T and DNA pol... 295 3e-78
gi|133910502|emb|CAM00615.1| oligoribonuclease (3'->5' exoribonu... 295 3e-78
gi|302865700|ref|YP_003834337.1| exonuclease RNase T and DNA pol... 295 4e-78
gi|315502266|ref|YP_004081153.1| exonuclease rnase t and DNA pol... 295 4e-78
gi|319948005|ref|ZP_08022182.1| oligoribonuclease [Dietzia cinna... 292 2e-77
gi|262201950|ref|YP_003273158.1| exonuclease RNase T and DNA pol... 290 7e-77
gi|302529267|ref|ZP_07281609.1| oligoribonuclease [Streptomyces ... 287 6e-76
gi|330466087|ref|YP_004403830.1| oligoribonuclease [Verrucosispo... 286 2e-75
gi|331698794|ref|YP_004335033.1| Oligoribonuclease [Pseudonocard... 274 7e-72
gi|317507722|ref|ZP_07965427.1| exonuclease [Segniliparus rugosu... 272 3e-71
gi|296392793|ref|YP_003657677.1| exonuclease RNase T and DNA pol... 271 5e-71
gi|324999723|ref|ZP_08120835.1| oligoribonuclease [Pseudonocardi... 270 7e-71
gi|300788911|ref|YP_003769202.1| oligoribonuclease [Amycolatopsi... 268 3e-70
gi|284990013|ref|YP_003408567.1| Exonuclease RNase T and DNA pol... 262 3e-68
gi|302534542|ref|ZP_07286884.1| oligoribonuclease [Streptomyces ... 261 7e-68
gi|336177462|ref|YP_004582837.1| Oligoribonuclease [Frankia symb... 256 1e-66
gi|320010661|gb|ADW05511.1| Exonuclease RNase T and DNA polymera... 256 2e-66
>gi|15609648|ref|NP_217027.1| oligoribonuclease [Mycobacterium tuberculosis H37Rv]
gi|15842039|ref|NP_337076.1| oligoribonuclease [Mycobacterium tuberculosis CDC1551]
gi|31793691|ref|NP_856184.1| oligoribonuclease [Mycobacterium bovis AF2122/97]
84 more sequence titles
Length=215
Score = 438 bits (1127), Expect = 2e-121, Method: Compositional matrix adjust.
Identities = 214/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)
Query 1 VQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
+QDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA
Sbjct 1 MQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
Query 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT
Sbjct 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
Query 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP
Sbjct 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
Query 181 QPGPSTSEIAAVVAELSDGAGAQEETDSAEAPQSG 215
QPGPSTSEIAAVVAELSDGAGAQEETDSAEAPQSG
Sbjct 181 QPGPSTSEIAAVVAELSDGAGAQEETDSAEAPQSG 215
>gi|240170995|ref|ZP_04749654.1| oligoribonuclease [Mycobacterium kansasii ATCC 12478]
Length=215
Score = 382 bits (981), Expect = 2e-104, Method: Compositional matrix adjust.
Identities = 185/215 (87%), Positives = 199/215 (93%), Gaps = 0/215 (0%)
Query 1 VQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
++DELVWIDCEMTGL++ SDKLIEIA LVTDADLNILGDGVDVV+HADD ALS MIDVVA
Sbjct 1 MRDELVWIDCEMTGLNIASDKLIEIAVLVTDADLNILGDGVDVVIHADDDALSSMIDVVA 60
Query 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
EMH+RSGLI+EVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDR+FIARDMP
Sbjct 61 EMHTRSGLIEEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRSFIARDMPA 120
Query 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
LD+FLHYRMIDVSSIKELCRRWYPRIYFGQPPKGL HRALADIHESIREL++YRRTAFVP
Sbjct 121 LDAFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLAHRALADIHESIRELQYYRRTAFVP 180
Query 181 QPGPSTSEIAAVVAELSDGAGAQEETDSAEAPQSG 215
PGPSTSEIAAVVA++ GA A DSAE P +G
Sbjct 181 PPGPSTSEIAAVVADIQVGADAPVTIDSAEEPPTG 215
>gi|183983834|ref|YP_001852125.1| oligoribonuclease Orn [Mycobacterium marinum M]
gi|183177160|gb|ACC42270.1| oligoribonuclease Orn [Mycobacterium marinum M]
Length=215
Score = 379 bits (972), Expect = 2e-103, Method: Compositional matrix adjust.
Identities = 183/215 (86%), Positives = 199/215 (93%), Gaps = 0/215 (0%)
Query 1 VQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
+++ELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVV+HADDAALS M+DVVA
Sbjct 1 MREELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVIHADDAALSSMVDVVA 60
Query 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
+MHSRSGL +EV+ASTVD+ATAEAMVLDYI EHVKQPKTAPLAGNSIATDR+FIARDMP
Sbjct 61 DMHSRSGLTEEVRASTVDMATAEAMVLDYIGEHVKQPKTAPLAGNSIATDRSFIARDMPA 120
Query 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
LD+FLHYRMIDVSSIKELCRRWYPRIYFGQPPKGL HRALADIHESIREL++YRRTAFVP
Sbjct 121 LDAFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLAHRALADIHESIRELQYYRRTAFVP 180
Query 181 QPGPSTSEIAAVVAELSDGAGAQEETDSAEAPQSG 215
QPGP+TSEI AVVA+L A E TDSA+ SG
Sbjct 181 QPGPTTSEITAVVADLQGADDAPEATDSAQERPSG 215
>gi|296170420|ref|ZP_06852008.1| oligoribonuclease [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295894891|gb|EFG74612.1| oligoribonuclease [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=215
Score = 377 bits (967), Expect = 7e-103, Method: Compositional matrix adjust.
Identities = 184/215 (86%), Positives = 195/215 (91%), Gaps = 0/215 (0%)
Query 1 VQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
++DELVWIDCEMTGLDLG+DKLIEIAALVTDADLNILGDGVDVV+HADDAALS MIDVV
Sbjct 1 MRDELVWIDCEMTGLDLGTDKLIEIAALVTDADLNILGDGVDVVIHADDAALSSMIDVVT 60
Query 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
EMHSRSGLIDEV+ASTVDLATAEAMVLDY+ +HVKQPKTAPLAGNSIATDRAFIARDMP
Sbjct 61 EMHSRSGLIDEVRASTVDLATAEAMVLDYVGQHVKQPKTAPLAGNSIATDRAFIARDMPA 120
Query 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
LDSFLHYRMIDVSSIKELCRRWYPRIYFGQP KGL HRALADIHESIREL+FYRRTAFVP
Sbjct 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPVKGLAHRALADIHESIRELQFYRRTAFVP 180
Query 181 QPGPSTSEIAAVVAELSDGAGAQEETDSAEAPQSG 215
PGP+TSEI AVVA+L G G DS P +G
Sbjct 181 PPGPATSEIEAVVADLDGGPGTPGPIDSVPEPPTG 215
>gi|118619032|ref|YP_907364.1| oligoribonuclease [Mycobacterium ulcerans Agy99]
gi|166216272|sp|A0PU74.1|ORN_MYCUA RecName: Full=Oligoribonuclease
gi|118571142|gb|ABL05893.1| oligoribonuclease Orn [Mycobacterium ulcerans Agy99]
Length=215
Score = 375 bits (963), Expect = 2e-102, Method: Compositional matrix adjust.
Identities = 182/215 (85%), Positives = 198/215 (93%), Gaps = 0/215 (0%)
Query 1 VQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
+++ELVWIDCEMTGLDLG DKLIEIAALVTDADLNILGDGVDVV+HADDAALS M+DVVA
Sbjct 1 MREELVWIDCEMTGLDLGPDKLIEIAALVTDADLNILGDGVDVVIHADDAALSSMVDVVA 60
Query 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
+MHSRSGL +EV+ASTVD+ATAEAMVLDYI EHVKQPKTAPLAGNSIATDR+FIARDMP
Sbjct 61 DMHSRSGLTEEVRASTVDMATAEAMVLDYIGEHVKQPKTAPLAGNSIATDRSFIARDMPA 120
Query 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
LD+FLHYRMIDVSSIKELCRRWYPRIYFGQPPKGL HRALADIHESIREL++YRRTAFVP
Sbjct 121 LDAFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLAHRALADIHESIRELQYYRRTAFVP 180
Query 181 QPGPSTSEIAAVVAELSDGAGAQEETDSAEAPQSG 215
QPGP+TSEI AVVA+L A E TDSA+ SG
Sbjct 181 QPGPTTSEITAVVADLQGVDDAPEATDSAQERPSG 215
>gi|342857899|ref|ZP_08714555.1| oligoribonuclease [Mycobacterium colombiense CECT 3035]
gi|342135232|gb|EGT88398.1| oligoribonuclease [Mycobacterium colombiense CECT 3035]
Length=215
Score = 370 bits (949), Expect = 1e-100, Method: Compositional matrix adjust.
Identities = 180/215 (84%), Positives = 195/215 (91%), Gaps = 0/215 (0%)
Query 1 VQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
++DELVWIDCEMTGLDLGSDKLIEIAALVTDADLN+LG+GVDVV+HADDAAL+ M DVVA
Sbjct 1 MRDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNVLGEGVDVVIHADDAALAAMGDVVA 60
Query 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
EMHSRSGL DEV+ASTVD+ATAEAMVLDYI EHVKQPKTAPLAGNSIATDRAF+ RDMP
Sbjct 61 EMHSRSGLTDEVRASTVDVATAEAMVLDYIGEHVKQPKTAPLAGNSIATDRAFLVRDMPA 120
Query 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
LDSFLHYRMIDVSSIKELCRRWYPRIYFGQP KGL HRALADIHESIREL+FYRRTAF+
Sbjct 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPVKGLAHRALADIHESIRELQFYRRTAFIA 180
Query 181 QPGPSTSEIAAVVAELSDGAGAQEETDSAEAPQSG 215
PGPSTSEI AVVA+L G A + +DSA P +G
Sbjct 181 PPGPSTSEIEAVVADLDGGNAAPKPSDSAPEPPTG 215
>gi|254823127|ref|ZP_05228128.1| oligoribonuclease [Mycobacterium intracellulare ATCC 13950]
Length=215
Score = 369 bits (947), Expect = 2e-100, Method: Compositional matrix adjust.
Identities = 182/214 (86%), Positives = 191/214 (90%), Gaps = 0/214 (0%)
Query 1 VQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
++DELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVV+HADDAALS M DVV
Sbjct 1 MRDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVIHADDAALSAMGDVVT 60
Query 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
EMHSRSGLIDEV+AS VDLATAEAMVLDYI +HVKQPKTAPLAGNSIATDRAFI RDMP
Sbjct 61 EMHSRSGLIDEVRASAVDLATAEAMVLDYIGQHVKQPKTAPLAGNSIATDRAFIVRDMPA 120
Query 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
LD++LHYRMIDVSSIKELCRRWYPRIYFGQP KGL HRALADIHESIREL+FYRRTAFV
Sbjct 121 LDTYLHYRMIDVSSIKELCRRWYPRIYFGQPTKGLAHRALADIHESIRELQFYRRTAFVS 180
Query 181 QPGPSTSEIAAVVAELSDGAGAQEETDSAEAPQS 214
PGPSTSEI AVV L G A +DSA AP S
Sbjct 181 PPGPSTSEIEAVVTSLDGGRDAPGPSDSASAPTS 214
>gi|15827135|ref|NP_301398.1| oligoribonuclease [Mycobacterium leprae TN]
gi|221229613|ref|YP_002503029.1| oligoribonuclease [Mycobacterium leprae Br4923]
gi|7227905|sp|O07708.1|ORN_MYCLE RecName: Full=Oligoribonuclease
gi|2222713|emb|CAB09908.1| hypothetical protein MLCL383.34c [Mycobacterium leprae]
gi|13092683|emb|CAC29935.1| putative oligoribonuclease [Mycobacterium leprae]
gi|219932720|emb|CAR70520.1| putative oligoribonuclease [Mycobacterium leprae Br4923]
Length=215
Score = 366 bits (939), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 179/215 (84%), Positives = 191/215 (89%), Gaps = 0/215 (0%)
Query 1 VQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
+ DELVWIDCEMTGLDLGSD+LIEIAALVTDADLNILGDGVDVV+H D ALS MIDVVA
Sbjct 1 MHDELVWIDCEMTGLDLGSDQLIEIAALVTDADLNILGDGVDVVIHIDSTALSSMIDVVA 60
Query 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
EMHSRSGLI+EV++S VDL TAE++VLDYIN HVKQPKTAPLAGNSIATDR+FIARDMPT
Sbjct 61 EMHSRSGLINEVESSIVDLVTAESIVLDYINNHVKQPKTAPLAGNSIATDRSFIARDMPT 120
Query 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
LDSFLHYRMIDVSSIKELCRRWYPRIYFGQP KGLTHRALADIHESIRELRFYRRTAFVP
Sbjct 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPAKGLTHRALADIHESIRELRFYRRTAFVP 180
Query 181 QPGPSTSEIAAVVAELSDGAGAQEETDSAEAPQSG 215
PGPST EIA VVA+LS + DSA +G
Sbjct 181 PPGPSTREIAEVVADLSGTPATPGDIDSAYERPNG 215
>gi|118464888|ref|YP_880896.1| oligoribonuclease [Mycobacterium avium 104]
gi|254774490|ref|ZP_05216006.1| oligoribonuclease [Mycobacterium avium subsp. avium ATCC 25291]
gi|166216267|sp|A0QDA8.1|ORN_MYCA1 RecName: Full=Oligoribonuclease
gi|118166175|gb|ABK67072.1| oligoribonuclease [Mycobacterium avium 104]
Length=215
Score = 365 bits (938), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 180/215 (84%), Positives = 192/215 (90%), Gaps = 0/215 (0%)
Query 1 VQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
++DELVWIDCEMTGLDLGSDKLIEIAALVTDA+LN+LGDGVDVV+HADDAAL+ M +VV
Sbjct 1 MRDELVWIDCEMTGLDLGSDKLIEIAALVTDAELNVLGDGVDVVIHADDAALAAMGEVVT 60
Query 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
EMHSRSGLIDEVKASTVDLATAE MVLDYI HVK PKTAPLAGNSIATDRAFI RDMP
Sbjct 61 EMHSRSGLIDEVKASTVDLATAEEMVLDYIRTHVKAPKTAPLAGNSIATDRAFIVRDMPA 120
Query 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
LDS+LHYRMIDVSSIKELCRRWYPRIYFGQP KGLTHRALADIHESIREL+FYRRTAFV
Sbjct 121 LDSYLHYRMIDVSSIKELCRRWYPRIYFGQPVKGLTHRALADIHESIRELQFYRRTAFVA 180
Query 181 QPGPSTSEIAAVVAELSDGAGAQEETDSAEAPQSG 215
PGPSTSEI AV A L +G A +DSA AP +G
Sbjct 181 PPGPSTSEIEAVAAALDEGKDAPGPSDSASAPPTG 215
>gi|41408418|ref|NP_961254.1| oligoribonuclease [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|48428193|sp|P61651.1|ORN_MYCPA RecName: Full=Oligoribonuclease
gi|41396774|gb|AAS04637.1| hypothetical protein MAP_2320 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336460994|gb|EGO39874.1| oligoribonuclease (3'->5' exoribonuclease) [Mycobacterium
avium subsp. paratuberculosis S397]
Length=215
Score = 365 bits (936), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 179/215 (84%), Positives = 192/215 (90%), Gaps = 0/215 (0%)
Query 1 VQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
++DELVWIDCEMTGLDLGSDKLIEIAALVTDA+LN+LGDGVDVV+HADDAAL+ M +VV
Sbjct 1 MRDELVWIDCEMTGLDLGSDKLIEIAALVTDAELNVLGDGVDVVIHADDAALAAMGEVVT 60
Query 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
EMHSRSGLIDEVKASTVDLATAE MVLDYI HVK PKTAPLAGNSIATDRAFI RDMP
Sbjct 61 EMHSRSGLIDEVKASTVDLATAEEMVLDYIRTHVKAPKTAPLAGNSIATDRAFIVRDMPA 120
Query 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
LD++LHYRMIDVSSIKELCRRWYPRIYFGQP KGLTHRALADIHESIREL+FYRRTAFV
Sbjct 121 LDAYLHYRMIDVSSIKELCRRWYPRIYFGQPVKGLTHRALADIHESIRELQFYRRTAFVA 180
Query 181 QPGPSTSEIAAVVAELSDGAGAQEETDSAEAPQSG 215
PGPSTSEI AV A L +G A +DSA AP +G
Sbjct 181 PPGPSTSEIEAVAAALDEGKDAPGPSDSASAPPTG 215
>gi|118473234|ref|YP_888984.1| oligoribonuclease [Mycobacterium smegmatis str. MC2 155]
gi|118174521|gb|ABK75417.1| oligoribonuclease [Mycobacterium smegmatis str. MC2 155]
Length=216
Score = 347 bits (890), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 167/209 (80%), Positives = 184/209 (89%), Gaps = 0/209 (0%)
Query 1 VQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
V+DELVWIDCEMTGLDL SD+LIEIA LVTDADLNILGDG+DVV+HADD +LS M+DVV
Sbjct 8 VRDELVWIDCEMTGLDLKSDRLIEIAVLVTDADLNILGDGLDVVIHADDESLSSMVDVVK 67
Query 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
+MH+RSGL +EV+ STVDLATAE MVLDYI HVKQ KTAPLAGNSIATDR FIARDMP
Sbjct 68 QMHARSGLTEEVRRSTVDLATAEEMVLDYIRGHVKQAKTAPLAGNSIATDRGFIARDMPK 127
Query 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
LD +LHYRMIDVSSIKELCRRWYPRIYFGQP KGL HRALADIHESIREL++YR TAFVP
Sbjct 128 LDDYLHYRMIDVSSIKELCRRWYPRIYFGQPEKGLAHRALADIHESIRELKYYRATAFVP 187
Query 181 QPGPSTSEIAAVVAELSDGAGAQEETDSA 209
QPGPSTS+IAA+ AEL + +TDSA
Sbjct 188 QPGPSTSDIAAIAAELGPPSSNSADTDSA 216
>gi|120405054|ref|YP_954883.1| oligoribonuclease [Mycobacterium vanbaalenii PYR-1]
gi|119957872|gb|ABM14877.1| Exonuclease, RNase T and DNA polymerase III [Mycobacterium vanbaalenii
PYR-1]
Length=214
Score = 345 bits (884), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 169/215 (79%), Positives = 186/215 (87%), Gaps = 4/215 (1%)
Query 1 VQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
V+DELVWIDCEMTGLDL SD+LIEIA LVTD++LNILGDG+DVV+HAD+ A+S MIDVVA
Sbjct 4 VRDELVWIDCEMTGLDLKSDRLIEIAVLVTDSELNILGDGLDVVIHADETAMSSMIDVVA 63
Query 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
+MH++SGLIDEV+ASTVDLATAE MV+ YI EHVKQ KTAPLAGNSIATDR FIARDMP
Sbjct 64 QMHAKSGLIDEVRASTVDLATAEDMVMTYIREHVKQAKTAPLAGNSIATDRGFIARDMPK 123
Query 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
LD +LHYRMIDVSSIKELCRRWYPRIYFGQP KGL HRALADIHESIRELR+YR+TAFV
Sbjct 124 LDDYLHYRMIDVSSIKELCRRWYPRIYFGQPEKGLAHRALADIHESIRELRYYRQTAFVA 183
Query 181 QPGPSTSEIAAVVAELSDGAGAQEETDSAEAPQSG 215
PGPSTS+IAAV AEL G DSA SG
Sbjct 184 PPGPSTSDIAAVAAEL----GPVANGDSARGGSSG 214
>gi|333990034|ref|YP_004522648.1| oligoribonuclease Orn [Mycobacterium sp. JDM601]
gi|333486002|gb|AEF35394.1| oligoribonuclease Orn [Mycobacterium sp. JDM601]
Length=218
Score = 338 bits (868), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 167/214 (79%), Positives = 179/214 (84%), Gaps = 0/214 (0%)
Query 2 QDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVAE 61
+DELVWIDCEMTGLDLGSDKLIEIAALVTD +LNILGDG+DVV+HADDA L M DVV +
Sbjct 5 RDELVWIDCEMTGLDLGSDKLIEIAALVTDGELNILGDGIDVVIHADDADLDAMSDVVTD 64
Query 62 MHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPTL 121
MH+RSGLIDEV+ASTVDLATAE MVLDY+ HVKQ KTAPLAGNSI TDR F+ARDM L
Sbjct 65 MHTRSGLIDEVRASTVDLATAEKMVLDYVRTHVKQAKTAPLAGNSIGTDRGFLARDMTAL 124
Query 122 DSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVPQ 181
D +LHYRMIDVSSIKELCRRWYPRIYFGQP KGL HRALADIHESIREL+FYRRTAFV
Sbjct 125 DDYLHYRMIDVSSIKELCRRWYPRIYFGQPEKGLAHRALADIHESIRELKFYRRTAFVAP 184
Query 182 PGPSTSEIAAVVAELSDGAGAQEETDSAEAPQSG 215
PGP TS+IA V AEL A A DS SG
Sbjct 185 PGPPTSDIAVVAAELGPPAEASGVIDSVAERPSG 218
>gi|145223130|ref|YP_001133808.1| oligoribonuclease [Mycobacterium gilvum PYR-GCK]
gi|145215616|gb|ABP45020.1| Exonuclease, RNase T and DNA polymerase III [Mycobacterium gilvum
PYR-GCK]
Length=214
Score = 336 bits (862), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 164/215 (77%), Positives = 185/215 (87%), Gaps = 4/215 (1%)
Query 1 VQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
V+DELVWIDCEMTGLDL +D LIEIA LVTD++LNILGDG+DVV+HA+D+AL MIDVV
Sbjct 4 VRDELVWIDCEMTGLDLKTDLLIEIAVLVTDSELNILGDGLDVVIHAEDSALDSMIDVVT 63
Query 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
+MH++SGLI+EV+ASTVD+ATAE MV+ YI EHV+Q KTAPLAGNSIATDR F+ARDMP
Sbjct 64 QMHTKSGLIEEVRASTVDVATAEDMVMTYIREHVRQAKTAPLAGNSIATDRGFLARDMPK 123
Query 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
LD +LHYRMIDVSSIKELCRRWYPRIYFGQP KGL HRALADIHESIRELR+YR+TAFV
Sbjct 124 LDDYLHYRMIDVSSIKELCRRWYPRIYFGQPEKGLAHRALADIHESIRELRYYRQTAFVA 183
Query 181 QPGPSTSEIAAVVAELSDGAGAQEETDSAEAPQSG 215
PGPSTS+IAAV AEL G TDSA SG
Sbjct 184 PPGPSTSDIAAVAAEL----GPNGPTDSAPGDSSG 214
>gi|108800606|ref|YP_640803.1| oligoribonuclease [Mycobacterium sp. MCS]
gi|119869745|ref|YP_939697.1| oligoribonuclease [Mycobacterium sp. KMS]
gi|126436222|ref|YP_001071913.1| oligoribonuclease [Mycobacterium sp. JLS]
6 more sequence titles
Length=215
Score = 334 bits (857), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 166/215 (78%), Positives = 181/215 (85%), Gaps = 0/215 (0%)
Query 1 VQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
++DELVWIDCEMTGLDL SD LIEIA LVTDADLNILGDG+DVV+HA D AL MI VV
Sbjct 1 MRDELVWIDCEMTGLDLRSDLLIEIAVLVTDADLNILGDGLDVVIHAPDEALDAMIPVVT 60
Query 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
EMH+RSGLI+EV+ASTVDLATAE MVLDYI HVKQ KTAPLAGNSIATDR FIARDM
Sbjct 61 EMHTRSGLIEEVRASTVDLATAEEMVLDYIRGHVKQAKTAPLAGNSIATDRGFIARDMAK 120
Query 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
LD +LHYRMIDVSSIKELCRRWYPRIYFGQP KGL HRALADIHESIREL++YR+TAFV
Sbjct 121 LDDYLHYRMIDVSSIKELCRRWYPRIYFGQPEKGLAHRALADIHESIRELKYYRQTAFVA 180
Query 181 QPGPSTSEIAAVVAELSDGAGAQEETDSAEAPQSG 215
PGPSTS+IAA+ AEL +TDSA +G
Sbjct 181 PPGPSTSDIAAIAAELGPPGKDAADTDSAAGHTTG 215
>gi|169628623|ref|YP_001702272.1| oligoribonuclease [Mycobacterium abscessus ATCC 19977]
gi|169240590|emb|CAM61618.1| Probable oligoribonuclease [Mycobacterium abscessus]
Length=208
Score = 328 bits (841), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 161/208 (78%), Positives = 178/208 (86%), Gaps = 4/208 (1%)
Query 2 QDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVAE 61
+DELVWIDCEMTGLDLGSDKLIEIAALVTD DLNILG+GVDVV+HADDAAL+ M VVA+
Sbjct 5 RDELVWIDCEMTGLDLGSDKLIEIAALVTDGDLNILGEGVDVVIHADDAALAAMPPVVAD 64
Query 62 MHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPTL 121
MH++SGL EV+ S V L AEAMVLDYI +HV KTAPLAGNSIATDR FIARDMP L
Sbjct 65 MHAKSGLTKEVRTSVVTLQEAEAMVLDYIRQHVASAKTAPLAGNSIATDRGFIARDMPEL 124
Query 122 DSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVPQ 181
D+FLHYRMIDVSSIKELCRRWYPRIYFGQP KGL HRALADI ESIRELR+YRR AFVP
Sbjct 125 DAFLHYRMIDVSSIKELCRRWYPRIYFGQPDKGLAHRALADIKESIRELRYYRRAAFVPD 184
Query 182 PGPSTSEIAAVVAELSDGAGAQEETDSA 209
PGPSTS++ A+VA+L + +TDSA
Sbjct 185 PGPSTSDLVAIVADLDNA----PDTDSA 208
>gi|315443587|ref|YP_004076466.1| oligoribonuclease (3'->5' exoribonuclease) [Mycobacterium
sp. Spyr1]
gi|315261890|gb|ADT98631.1| oligoribonuclease (3'->5' exoribonuclease) [Mycobacterium
sp. Spyr1]
Length=206
Score = 327 bits (838), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 159/210 (76%), Positives = 180/210 (86%), Gaps = 4/210 (1%)
Query 6 VWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVAEMHSR 65
+WIDCEMTGLDL +D LIEIA LVTD++LNILGDG+DVV+HA+D+AL MIDVV +MH++
Sbjct 1 MWIDCEMTGLDLKTDLLIEIAVLVTDSELNILGDGLDVVIHAEDSALDSMIDVVTQMHTK 60
Query 66 SGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPTLDSFL 125
SGLI+EV+ASTVD+ATAE MV+ YI EHV+Q KTAPLAGNSIATDR F+ARDMP LD +L
Sbjct 61 SGLIEEVRASTVDVATAEDMVMTYIREHVRQAKTAPLAGNSIATDRGFLARDMPKLDDYL 120
Query 126 HYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVPQPGPS 185
HYRMIDVSSIKELCRRWYPRIYFGQP KGL HRALADIHESIRELR+YR+TAFV PGPS
Sbjct 121 HYRMIDVSSIKELCRRWYPRIYFGQPEKGLAHRALADIHESIRELRYYRQTAFVAPPGPS 180
Query 186 TSEIAAVVAELSDGAGAQEETDSAEAPQSG 215
TS+IAAV AEL G TDSA SG
Sbjct 181 TSDIAAVAAEL----GPNGPTDSAPGDSSG 206
>gi|54023254|ref|YP_117496.1| oligoribonuclease [Nocardia farcinica IFM 10152]
gi|59797997|sp|Q5Z0A9.1|ORN_NOCFA RecName: Full=Oligoribonuclease
gi|54014762|dbj|BAD56132.1| putative oligoribonuclease [Nocardia farcinica IFM 10152]
Length=216
Score = 320 bits (820), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 158/209 (76%), Positives = 178/209 (86%), Gaps = 6/209 (2%)
Query 5 LVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVAEMHS 64
+VW+DCEMTGL L SDKLIE++ALVTD+DLNILGDGVD+V+HADDAAL+ M VVAEMH+
Sbjct 6 VVWMDCEMTGLRLDSDKLIEVSALVTDSDLNILGDGVDIVIHADDAALAAMPPVVAEMHA 65
Query 65 RSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPTLDSF 124
RSGL DEV+ STV +A AE VLDYI ++V P+T PLAGNSIATDRAFIARDMP LD+
Sbjct 66 RSGLTDEVRRSTVTVAEAEQQVLDYIRQYVPTPRTVPLAGNSIATDRAFIARDMPALDAH 125
Query 125 LHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVPQPGP 184
LHYRMIDVSSIKELCRRWYPRIYFGQP KGLTHRALADI ESIREL +YRRTAFV PGP
Sbjct 126 LHYRMIDVSSIKELCRRWYPRIYFGQPEKGLTHRALADIKESIRELEYYRRTAFVAPPGP 185
Query 185 STSEIAAVVAELSDGAGAQEETDSAEAPQ 213
ST+EIAAV A+L G AQ +AE+PQ
Sbjct 186 STAEIAAVAAQL--GGTAQ----TAESPQ 208
>gi|312140423|ref|YP_004007759.1| exonuclease [Rhodococcus equi 103S]
gi|311889762|emb|CBH49079.1| exonuclease [Rhodococcus equi 103S]
Length=199
Score = 318 bits (815), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 155/196 (80%), Positives = 171/196 (88%), Gaps = 0/196 (0%)
Query 1 VQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
+QD+LVWIDCEMTGL LGSDKLIEIAALVTD+DLNILG+GVD+V+HADD AL+ M DVV
Sbjct 1 MQDKLVWIDCEMTGLRLGSDKLIEIAALVTDSDLNILGEGVDIVIHADDEALADMPDVVT 60
Query 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
+MH++SGL +EV+ASTV LA AE MVL YI EHV T PLAGNSIATDR FIARDMP
Sbjct 61 QMHAKSGLTEEVRASTVTLAEAEQMVLAYIREHVPVAGTVPLAGNSIATDRGFIARDMPE 120
Query 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
LDS LHYRMIDVSSIKELCRRWYPRIYFGQP KGL+HRALADI ESIREL++YRRTAFV
Sbjct 121 LDSHLHYRMIDVSSIKELCRRWYPRIYFGQPEKGLSHRALADIKESIRELQYYRRTAFVA 180
Query 181 QPGPSTSEIAAVVAEL 196
PGPST+EIAAVV L
Sbjct 181 DPGPSTTEIAAVVEAL 196
>gi|229780998|ref|YP_001103540.2| oligoribonuclease [Saccharopolyspora erythraea NRRL 2338]
gi|291007403|ref|ZP_06565376.1| oligoribonuclease [Saccharopolyspora erythraea NRRL 2338]
Length=221
Score = 314 bits (805), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 152/218 (70%), Positives = 173/218 (80%), Gaps = 3/218 (1%)
Query 1 VQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
+ D LVWIDCEMTGLDLG D LIEIAALVTDADLNILG+GVD+V+HADD L+GM DVV
Sbjct 1 MNDRLVWIDCEMTGLDLGKDALIEIAALVTDADLNILGEGVDIVIHADDEVLAGMPDVVR 60
Query 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
EMH RSGL +EV+ STV LA AE +LDYI HV ++APLAGNSIATDR FIARDMPT
Sbjct 61 EMHERSGLTEEVRRSTVTLAEAEQRILDYIRRHVPDGRSAPLAGNSIATDRGFIARDMPT 120
Query 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
LD+ LHYRM+DVSSIKELCRRW+PRIY+ QP KGL HRALADI ESIREL +YRRTAFVP
Sbjct 121 LDAHLHYRMVDVSSIKELCRRWFPRIYYAQPEKGLAHRALADIKESIRELAYYRRTAFVP 180
Query 181 QPGPSTSEIAAVVAELSDG---AGAQEETDSAEAPQSG 215
QPGP++ + AV +EL G G E+ +A Q G
Sbjct 181 QPGPTSEQAQAVASELLGGDNVVGGTEKARQKQADQRG 218
>gi|111018425|ref|YP_701397.1| oligoribonuclease [Rhodococcus jostii RHA1]
gi|123340872|sp|Q0SGU7.1|ORN_RHOSR RecName: Full=Oligoribonuclease
gi|110817955|gb|ABG93239.1| oligoribonuclease [Rhodococcus jostii RHA1]
Length=199
Score = 314 bits (804), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 151/196 (78%), Positives = 170/196 (87%), Gaps = 0/196 (0%)
Query 1 VQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
+QD+LVWIDCEMTGL LG+DKLIEIAALVTD++LN+LG+GVD+V+HADD AL+ M DVV
Sbjct 1 MQDKLVWIDCEMTGLRLGTDKLIEIAALVTDSELNVLGEGVDIVIHADDDALAAMPDVVT 60
Query 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
+MH SGL DEV+ STV LA AE VL YI EHV TAPLAGNSIATDR FIARDMP
Sbjct 61 KMHENSGLTDEVRKSTVTLAEAEQQVLAYIREHVPVAGTAPLAGNSIATDRGFIARDMPD 120
Query 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
LD++LHYRMIDVSSIKEL RRWYPRIYFGQP KGL HRALADI ESIREL++YR+TAFVP
Sbjct 121 LDTYLHYRMIDVSSIKELSRRWYPRIYFGQPEKGLAHRALADIRESIRELKYYRKTAFVP 180
Query 181 QPGPSTSEIAAVVAEL 196
+PGPSTS+IAAVV EL
Sbjct 181 EPGPSTSDIAAVVEEL 196
>gi|226360543|ref|YP_002778321.1| oligoribonuclease [Rhodococcus opacus B4]
gi|226239028|dbj|BAH49376.1| oligoribonuclease [Rhodococcus opacus B4]
Length=199
Score = 311 bits (797), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 150/196 (77%), Positives = 169/196 (87%), Gaps = 0/196 (0%)
Query 1 VQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
+QD+LVWIDCEMTGL LG+DKLIEIAALVTD++LN+LG+GVD+V+HADD AL+ M DVV
Sbjct 1 MQDKLVWIDCEMTGLRLGTDKLIEIAALVTDSELNVLGEGVDIVIHADDDALAAMPDVVT 60
Query 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
+MH SGL DEV+ STV LA AE VL YI EHV TAPLAGNSIATDR FIARDMP
Sbjct 61 KMHENSGLTDEVRKSTVTLAEAEQQVLAYIREHVPVAGTAPLAGNSIATDRGFIARDMPD 120
Query 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
LD++LHYRMIDVSSIKEL RRWYPRIYFGQP KGL HRALADI ESIREL++YR+TAFV
Sbjct 121 LDTYLHYRMIDVSSIKELSRRWYPRIYFGQPEKGLAHRALADIKESIRELKYYRKTAFVA 180
Query 181 QPGPSTSEIAAVVAEL 196
+PGPSTS+IAAVV EL
Sbjct 181 EPGPSTSDIAAVVEEL 196
>gi|333918708|ref|YP_004492289.1| putative oligoribonuclease [Amycolicicoccus subflavus DQS3-9A1]
gi|333480929|gb|AEF39489.1| putative oligoribonuclease [Amycolicicoccus subflavus DQS3-9A1]
Length=212
Score = 308 bits (788), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 149/210 (71%), Positives = 169/210 (81%), Gaps = 0/210 (0%)
Query 1 VQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
+ D+LVWIDCEMTGLDL DKL+EIAALVTDADLNILG+G+DVV+HADDA L M VVA
Sbjct 1 MHDKLVWIDCEMTGLDLSKDKLVEIAALVTDADLNILGEGIDVVIHADDADLDAMQPVVA 60
Query 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
EMH RSGL +EV+ S V + A+ +VLDYI +HV P TAPLAGNSIATDR F++RDMP
Sbjct 61 EMHRRSGLTEEVRNSAVTIDEAQELVLDYIRKHVPTPSTAPLAGNSIATDRGFLSRDMPK 120
Query 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
LD LHYRMIDVSSIKELCRRWYPRIY+GQP KGL HRALADI ESIREL+FYRRTAFV
Sbjct 121 LDEHLHYRMIDVSSIKELCRRWYPRIYYGQPDKGLAHRALADIRESIRELKFYRRTAFVA 180
Query 181 QPGPSTSEIAAVVAELSDGAGAQEETDSAE 210
PGPST++IA V EL + DSA+
Sbjct 181 SPGPSTTDIAQVAKELLEEHNGPAGPDSAK 210
>gi|343927571|ref|ZP_08767041.1| oligoribonuclease [Gordonia alkanivorans NBRC 16433]
gi|343762559|dbj|GAA13967.1| oligoribonuclease [Gordonia alkanivorans NBRC 16433]
Length=199
Score = 306 bits (785), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 146/196 (75%), Positives = 165/196 (85%), Gaps = 0/196 (0%)
Query 1 VQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
+QD+LVWIDCEMTGL L SDKLIEIAALVTD DLNILGDGVDVV+HADDAAL+ M DVV
Sbjct 1 MQDKLVWIDCEMTGLRLESDKLIEIAALVTDGDLNILGDGVDVVIHADDAALASMPDVVT 60
Query 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
+MH+ SGL +EV+ASTV LA AE MVLDYI +HV P PLAGNSIATDR FIARDMP
Sbjct 61 KMHADSGLTEEVRASTVTLAEAEKMVLDYIRKHVTSPGAVPLAGNSIATDRGFIARDMPE 120
Query 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
LD++LHYRM+DVSSIKELCRRW+P++YFGQP KGL HRALADI ESIRELR+YR AFVP
Sbjct 121 LDAYLHYRMVDVSSIKELCRRWFPKVYFGQPDKGLAHRALADIRESIRELRYYRAAAFVP 180
Query 181 QPGPSTSEIAAVVAEL 196
PGP +A +V +L
Sbjct 181 APGPDVDALANIVKDL 196
>gi|258652005|ref|YP_003201161.1| exonuclease RNase T and DNA polymerase III [Nakamurella multipartita
DSM 44233]
gi|258555230|gb|ACV78172.1| Exonuclease RNase T and DNA polymerase III [Nakamurella multipartita
DSM 44233]
Length=212
Score = 304 bits (778), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 142/197 (73%), Positives = 165/197 (84%), Gaps = 0/197 (0%)
Query 1 VQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
+ D LVW+DCEMTGLDLG+DKLIEIAALVTD+DLNILG+GVDVV+HADDAAL+ M VV
Sbjct 1 MNDRLVWVDCEMTGLDLGTDKLIEIAALVTDSDLNILGEGVDVVIHADDAALAAMPQVVT 60
Query 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
EMH++SGL D V+ STV +A AE +VLDYI E V +PK+APLAGNSIATDR FIARDMP
Sbjct 61 EMHAKSGLTDRVRESTVTMAQAEQLVLDYIREFVPEPKSAPLAGNSIATDRGFIARDMPL 120
Query 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
LD +LHYRM+DVSSIKELCRRWYPRIYFGQP K ++HRAL DI ESIREL +YR TAFVP
Sbjct 121 LDDYLHYRMVDVSSIKELCRRWYPRIYFGQPAKVMSHRALTDITESIRELAYYRGTAFVP 180
Query 181 QPGPSTSEIAAVVAELS 197
PGP+ ++ E+S
Sbjct 181 APGPTGEQVLTAATEVS 197
>gi|256375198|ref|YP_003098858.1| oligoribonuclease [Actinosynnema mirum DSM 43827]
gi|255919501|gb|ACU35012.1| Exonuclease RNase T and DNA polymerase III [Actinosynnema mirum
DSM 43827]
Length=208
Score = 304 bits (778), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 145/194 (75%), Positives = 165/194 (86%), Gaps = 0/194 (0%)
Query 3 DELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVAEM 62
D LVWIDCEMTGLDLGSD LIEIAALVTDA+LN+LG+GVDVV+HADD AL+ M +VV +M
Sbjct 2 DRLVWIDCEMTGLDLGSDALIEIAALVTDAELNVLGEGVDVVIHADDEALAAMPEVVVKM 61
Query 63 HSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPTLD 122
H++SGL +EV+ ST LA AEA+VL YI E V +TAPLAGNSIATDR FIARDMP LD
Sbjct 62 HAKSGLTEEVRRSTTTLAEAEALVLAYIREWVPDARTAPLAGNSIATDRGFIARDMPELD 121
Query 123 SFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVPQP 182
+ LHYRM+DVSSIKELCRRWYPRIYF QP KGL HRALADI ESIREL +YRRTAFVPQP
Sbjct 122 AHLHYRMVDVSSIKELCRRWYPRIYFAQPGKGLAHRALADIEESIRELAYYRRTAFVPQP 181
Query 183 GPSTSEIAAVVAEL 196
GP++ + +V AEL
Sbjct 182 GPTSEQAQSVAAEL 195
>gi|145593678|ref|YP_001157975.1| oligoribonuclease [Salinispora tropica CNB-440]
gi|145303015|gb|ABP53597.1| Exonuclease, RNase T and DNA polymerase III [Salinispora tropica
CNB-440]
Length=198
Score = 303 bits (776), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 144/196 (74%), Positives = 162/196 (83%), Gaps = 0/196 (0%)
Query 1 VQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
V D LVWIDCEMTGLDLG DKLIE+AALVTD DLN+LG+GVDVV+HAD+AAL M ++VA
Sbjct 3 VADLLVWIDCEMTGLDLGGDKLIEVAALVTDPDLNVLGEGVDVVIHADEAALDKMPEIVA 62
Query 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
MH++SGL +EV+ ST+ LA AE MVLDYI HVK P+TAPL GNSIATDR FIARDMP
Sbjct 63 TMHAKSGLTEEVRRSTIGLAEAEEMVLDYITSHVKDPRTAPLCGNSIATDRGFIARDMPR 122
Query 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
LD+ LHYRMIDVSSIKELCRRWYPR+YF QP KGL HRALAD+ ESIREL +YRRT FVP
Sbjct 123 LDNHLHYRMIDVSSIKELCRRWYPRVYFSQPRKGLAHRALADVRESIRELEYYRRTLFVP 182
Query 181 QPGPSTSEIAAVVAEL 196
PGP AV A+L
Sbjct 183 LPGPDVESAKAVAAKL 198
>gi|159036666|ref|YP_001535919.1| oligoribonuclease [Salinispora arenicola CNS-205]
gi|157915501|gb|ABV96928.1| Exonuclease RNase T and DNA polymerase III [Salinispora arenicola
CNS-205]
Length=196
Score = 301 bits (770), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 141/194 (73%), Positives = 162/194 (84%), Gaps = 0/194 (0%)
Query 3 DELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVAEM 62
D LVWIDCEMTGLDLGSDKLIE+AALVTD DLN+LG+GVDVV+HAD+AAL M ++VA M
Sbjct 3 DLLVWIDCEMTGLDLGSDKLIEVAALVTDPDLNVLGEGVDVVIHADEAALDKMPEIVATM 62
Query 63 HSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPTLD 122
H++SGL +EV+ STV LA AE ++LDY+ HVK P+TAPL GNSIATDR FIARDMP LD
Sbjct 63 HAKSGLTEEVRRSTVGLAEAEDLILDYVTSHVKDPRTAPLCGNSIATDRGFIARDMPRLD 122
Query 123 SFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVPQP 182
+ LHYRMIDVSSIKELCRRWYPR+YF QP KGL HRALAD+ ESIREL +YRRT FVP P
Sbjct 123 NHLHYRMIDVSSIKELCRRWYPRVYFSQPQKGLAHRALADVRESIRELEYYRRTLFVPLP 182
Query 183 GPSTSEIAAVVAEL 196
GP A+ A+L
Sbjct 183 GPDVDSAKAIAAKL 196
>gi|226307350|ref|YP_002767310.1| oligoribonuclease [Rhodococcus erythropolis PR4]
gi|229494052|ref|ZP_04387821.1| oligoribonuclease [Rhodococcus erythropolis SK121]
gi|226186467|dbj|BAH34571.1| oligoribonuclease [Rhodococcus erythropolis PR4]
gi|229319121|gb|EEN84973.1| oligoribonuclease [Rhodococcus erythropolis SK121]
Length=202
Score = 300 bits (768), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 147/196 (75%), Positives = 166/196 (85%), Gaps = 0/196 (0%)
Query 1 VQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
VQD+LVWIDCEMTGL L SDKLIEIAALVTD+DLNILG+GVD+V+HADD AL+ M DVV
Sbjct 4 VQDKLVWIDCEMTGLRLESDKLIEIAALVTDSDLNILGEGVDIVIHADDDALAAMPDVVK 63
Query 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
+MH++SGL +EV+ STV LA AE VL YI +HV TAPLAGNSIATDR FI+RDM
Sbjct 64 KMHAKSGLTEEVRKSTVTLAEAEKEVLAYIRKHVPVAGTAPLAGNSIATDRGFISRDMTA 123
Query 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
LD++LHYRMIDVSSIKEL RRWYPRIYFGQP KGL HRALADI ESIREL++YR TAFV
Sbjct 124 LDTYLHYRMIDVSSIKELSRRWYPRIYFGQPEKGLAHRALADIKESIRELKYYRGTAFVA 183
Query 181 QPGPSTSEIAAVVAEL 196
PGPS++EIAAVV L
Sbjct 184 APGPSSAEIAAVVEGL 199
>gi|326382785|ref|ZP_08204475.1| oligoribonuclease [Gordonia neofelifaecis NRRL B-59395]
gi|326198375|gb|EGD55559.1| oligoribonuclease [Gordonia neofelifaecis NRRL B-59395]
Length=199
Score = 298 bits (764), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 141/196 (72%), Positives = 163/196 (84%), Gaps = 0/196 (0%)
Query 1 VQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
+QD+LVWIDCEMTGLD+GSDKLIEIAALVTD+DLNILG+GVDVV+HADD AL+ M DVV
Sbjct 1 MQDKLVWIDCEMTGLDVGSDKLIEIAALVTDSDLNILGEGVDVVIHADDEALAAMPDVVT 60
Query 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
+MH+ SGL +EV+ASTV LA AE VLDY+ EH+ APLAGNSIATDR FIARDMP
Sbjct 61 KMHADSGLTEEVRASTVTLAEAEKAVLDYLREHITTAGAAPLAGNSIATDRGFIARDMPE 120
Query 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
L+++LHYRM+DVSSIKELCRRW+P IYFGQP KGL HRALADI ESIRELR+YR AFV
Sbjct 121 LNAYLHYRMVDVSSIKELCRRWFPPIYFGQPQKGLAHRALADIRESIRELRYYREAAFVA 180
Query 181 QPGPSTSEIAAVVAEL 196
PGP + +V +L
Sbjct 181 APGPDAKSLEKIVEKL 196
>gi|325675967|ref|ZP_08155650.1| oligoribonuclease [Rhodococcus equi ATCC 33707]
gi|325553205|gb|EGD22884.1| oligoribonuclease [Rhodococcus equi ATCC 33707]
Length=188
Score = 296 bits (758), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 146/185 (79%), Positives = 160/185 (87%), Gaps = 0/185 (0%)
Query 12 MTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVAEMHSRSGLIDE 71
MTGL LGSDKLIEIAALVTD+DLNILG+GVD+V+HADD AL+ M DVV +MH++SGL +E
Sbjct 1 MTGLRLGSDKLIEIAALVTDSDLNILGEGVDIVIHADDEALADMPDVVTQMHAKSGLTEE 60
Query 72 VKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPTLDSFLHYRMID 131
V+ASTV LA AE MVL YI EHV T PLAGNSIATDR FIARDMP LDS LHYRMID
Sbjct 61 VRASTVTLAEAEQMVLAYIREHVPVAGTVPLAGNSIATDRGFIARDMPELDSHLHYRMID 120
Query 132 VSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVPQPGPSTSEIAA 191
VSSIKELCRRWYPRIYFGQP KGL+HRALADI ESIREL++YRRTAFV PGPST+EIAA
Sbjct 121 VSSIKELCRRWYPRIYFGQPEKGLSHRALADIKESIRELQYYRRTAFVADPGPSTTEIAA 180
Query 192 VVAEL 196
VV L
Sbjct 181 VVEAL 185
>gi|257056841|ref|YP_003134673.1| oligoribonuclease (3'->5' exoribonuclease) [Saccharomonospora
viridis DSM 43017]
gi|256586713|gb|ACU97846.1| oligoribonuclease (3'->5' exoribonuclease) [Saccharomonospora
viridis DSM 43017]
Length=202
Score = 296 bits (757), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 139/186 (75%), Positives = 158/186 (85%), Gaps = 0/186 (0%)
Query 1 VQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
+ D LVWIDCEMTGLDL D LIEIA LVTDA+LN+LGDGVD+V+HADD AL+ M DVV
Sbjct 1 MTDRLVWIDCEMTGLDLAKDALIEIAVLVTDAELNVLGDGVDLVIHADDEALANMPDVVR 60
Query 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
EMH+RSGL +EV+ ST+ L AE L YI EHV +PKTAPLAGNSIATDR FIARDMPT
Sbjct 61 EMHARSGLTEEVRRSTMTLEEAERRALAYIREHVPEPKTAPLAGNSIATDRGFIARDMPT 120
Query 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
LDS+LHYRM+DVSSIKEL RRWYPRIY+ +P KGL HRALADI ESI EL++YR+TAFVP
Sbjct 121 LDSYLHYRMVDVSSIKELIRRWYPRIYYAKPEKGLAHRALADIKESIGELKYYRKTAFVP 180
Query 181 QPGPST 186
QPGPS+
Sbjct 181 QPGPSS 186
>gi|238063163|ref|ZP_04607872.1| oligoribonuclease [Micromonospora sp. ATCC 39149]
gi|237884974|gb|EEP73802.1| oligoribonuclease [Micromonospora sp. ATCC 39149]
Length=198
Score = 295 bits (756), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 140/196 (72%), Positives = 158/196 (81%), Gaps = 0/196 (0%)
Query 1 VQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
V D LVWIDCEMTGLDLG D LIE+AALVTD DLN+LGDGVDVV+HAD+AAL M ++V
Sbjct 3 VADLLVWIDCEMTGLDLGRDALIEVAALVTDPDLNVLGDGVDVVIHADEAALEAMPEIVR 62
Query 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
MH +SGL +EV+ S V LA AE +VLDY+ HVK P+ APL GNSIATDR FI+RDMP
Sbjct 63 TMHGKSGLTEEVRRSAVTLAEAEDLVLDYVTSHVKDPRAAPLCGNSIATDRGFISRDMPR 122
Query 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
LD+ LHYRMIDVSSIKELCRRWYPR+YFGQP KGL HRALADI ESIREL +YRRT FVP
Sbjct 123 LDAHLHYRMIDVSSIKELCRRWYPRVYFGQPRKGLAHRALADIRESIRELEYYRRTIFVP 182
Query 181 QPGPSTSEIAAVVAEL 196
PGP A+ A+L
Sbjct 183 LPGPDVDSAKAIAAQL 198
>gi|296139064|ref|YP_003646307.1| exonuclease RNase T and DNA polymerase III [Tsukamurella paurometabola
DSM 20162]
gi|296027198|gb|ADG77968.1| Exonuclease RNase T and DNA polymerase III [Tsukamurella paurometabola
DSM 20162]
Length=198
Score = 295 bits (755), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 142/196 (73%), Positives = 164/196 (84%), Gaps = 1/196 (0%)
Query 1 VQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
+ D+LVW+DCEMTGLDL SD+LIEIAALVTD DLNILG+GVD+V+H DDAAL M VV
Sbjct 1 MDDKLVWVDCEMTGLDLTSDRLIEIAALVTDGDLNILGEGVDLVIHVDDAALDAMPPVVQ 60
Query 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
+MH++SGL DEV+ STV + AE VL Y+ EH+ +P T PLAGNSIATDR FIA++MP
Sbjct 61 DMHAKSGLTDEVRRSTVTVREAEEAVLAYLREHI-EPGTVPLAGNSIATDRRFIAQEMPE 119
Query 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
LD FLHYRM+DVSSIKELCRRWYPRIYFGQP KGL HRALADI ESIREL++YR TAFVP
Sbjct 120 LDGFLHYRMVDVSSIKELCRRWYPRIYFGQPDKGLAHRALADIRESIRELKYYRSTAFVP 179
Query 181 QPGPSTSEIAAVVAEL 196
PGPS+ EI+A V EL
Sbjct 180 APGPSSEEISAKVEEL 195
>gi|133910502|emb|CAM00615.1| oligoribonuclease (3'->5' exoribonuclease) [Saccharopolyspora
erythraea NRRL 2338]
Length=210
Score = 295 bits (755), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 144/207 (70%), Positives = 164/207 (80%), Gaps = 3/207 (1%)
Query 12 MTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVAEMHSRSGLIDE 71
MTGLDLG D LIEIAALVTDADLNILG+GVD+V+HADD L+GM DVV EMH RSGL +E
Sbjct 1 MTGLDLGKDALIEIAALVTDADLNILGEGVDIVIHADDEVLAGMPDVVREMHERSGLTEE 60
Query 72 VKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPTLDSFLHYRMID 131
V+ STV LA AE +LDYI HV ++APLAGNSIATDR FIARDMPTLD+ LHYRM+D
Sbjct 61 VRRSTVTLAEAEQRILDYIRRHVPDGRSAPLAGNSIATDRGFIARDMPTLDAHLHYRMVD 120
Query 132 VSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVPQPGPSTSEIAA 191
VSSIKELCRRW+PRIY+ QP KGL HRALADI ESIREL +YRRTAFVPQPGP++ + A
Sbjct 121 VSSIKELCRRWFPRIYYAQPEKGLAHRALADIKESIRELAYYRRTAFVPQPGPTSEQAQA 180
Query 192 VVAELSDG---AGAQEETDSAEAPQSG 215
V +EL G G E+ +A Q G
Sbjct 181 VASELLGGDNVVGGTEKARQKQADQRG 207
>gi|302865700|ref|YP_003834337.1| exonuclease RNase T and DNA polymerase III [Micromonospora aurantiaca
ATCC 27029]
gi|302568559|gb|ADL44761.1| Exonuclease RNase T and DNA polymerase III [Micromonospora aurantiaca
ATCC 27029]
Length=196
Score = 295 bits (754), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 140/194 (73%), Positives = 158/194 (82%), Gaps = 0/194 (0%)
Query 3 DELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVAEM 62
D LVWIDCEMTGLDL D LIE+AALVTD DLN+LGDGVDVV+HADD AL GM ++V M
Sbjct 3 DLLVWIDCEMTGLDLRRDALIEVAALVTDPDLNVLGDGVDVVIHADDEALDGMPEIVRTM 62
Query 63 HSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPTLD 122
H++SGL +EV+ STV LA AE MVLDY+ +VK P+TAPL GNSIATDR F+ARDM LD
Sbjct 63 HAKSGLTEEVRLSTVTLAEAEDMVLDYVTSYVKDPRTAPLCGNSIATDRGFLARDMTRLD 122
Query 123 SFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVPQP 182
+ LHYRMIDVSSIKELCRRWYPR+YFGQP KGL HRALADI ESIREL +YRRT FVP P
Sbjct 123 AHLHYRMIDVSSIKELCRRWYPRVYFGQPQKGLAHRALADIRESIRELEYYRRTVFVPLP 182
Query 183 GPSTSEIAAVVAEL 196
GP A+ A+L
Sbjct 183 GPDVEAAKAIAAQL 196
>gi|315502266|ref|YP_004081153.1| exonuclease rnase t and DNA polymerase III [Micromonospora sp.
L5]
gi|315408885|gb|ADU07002.1| Exonuclease RNase T and DNA polymerase III [Micromonospora sp.
L5]
Length=196
Score = 295 bits (754), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 140/194 (73%), Positives = 158/194 (82%), Gaps = 0/194 (0%)
Query 3 DELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVAEM 62
D LVWIDCEMTGLDL D LIE+AALVTD DLN+LGDGVDVV+HADD AL GM ++V M
Sbjct 3 DLLVWIDCEMTGLDLRRDALIEVAALVTDPDLNVLGDGVDVVIHADDEALDGMPEIVRTM 62
Query 63 HSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPTLD 122
H++SGL +EV+ STV LA AE MVLDY+ +VK P+TAPL GNSIATDR F+ARDM LD
Sbjct 63 HAKSGLTEEVRRSTVTLAEAEDMVLDYVTSYVKDPRTAPLCGNSIATDRGFLARDMTRLD 122
Query 123 SFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVPQP 182
+ LHYRMIDVSSIKELCRRWYPR+YFGQP KGL HRALADI ESIREL +YRRT FVP P
Sbjct 123 AHLHYRMIDVSSIKELCRRWYPRVYFGQPQKGLAHRALADIRESIRELEYYRRTVFVPLP 182
Query 183 GPSTSEIAAVVAEL 196
GP A+ A+L
Sbjct 183 GPDVEAAKAIAAQL 196
>gi|319948005|ref|ZP_08022182.1| oligoribonuclease [Dietzia cinnamea P4]
gi|319438351|gb|EFV93294.1| oligoribonuclease [Dietzia cinnamea P4]
Length=222
Score = 292 bits (748), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 134/195 (69%), Positives = 161/195 (83%), Gaps = 0/195 (0%)
Query 2 QDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVAE 61
D +VWIDCEMTGLD +DKL+EIAALVTD+DLN+LG+GVD+V+HA DAAL M+ VV +
Sbjct 24 NDRIVWIDCEMTGLDTTNDKLVEIAALVTDSDLNVLGEGVDIVIHASDAALDAMVPVVRD 83
Query 62 MHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPTL 121
MH+ SGL +E++ STV +A AE VLDY+ V +APLAGNSI TDR F+ARDMP L
Sbjct 84 MHASSGLTEEIRRSTVTVAEAEKAVLDYVRAWVPVAGSAPLAGNSIGTDRGFLARDMPEL 143
Query 122 DSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVPQ 181
+S+LHYRMIDVSSIKELCRRWYPRIYFGQP KG++HRALADI ESIREL++YR TAFVPQ
Sbjct 144 NSYLHYRMIDVSSIKELCRRWYPRIYFGQPEKGMSHRALADIKESIRELQYYRATAFVPQ 203
Query 182 PGPSTSEIAAVVAEL 196
PGP++ E+ AEL
Sbjct 204 PGPTSDEVKKAAAEL 218
>gi|262201950|ref|YP_003273158.1| exonuclease RNase T and DNA polymerase III [Gordonia bronchialis
DSM 43247]
gi|262085297|gb|ACY21265.1| Exonuclease RNase T and DNA polymerase III [Gordonia bronchialis
DSM 43247]
Length=194
Score = 290 bits (743), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 140/191 (74%), Positives = 157/191 (83%), Gaps = 0/191 (0%)
Query 6 VWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVAEMHSR 65
+WIDCEMTGL L SDKLIEIAALVTD DLNILG+GVDVV+HADD AL+ M DVV +MH+
Sbjct 1 MWIDCEMTGLSLESDKLIEIAALVTDGDLNILGEGVDVVIHADDDALANMPDVVTKMHAD 60
Query 66 SGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPTLDSFL 125
SGL +EV+ASTV LA AE +VLDYI HV PLAGNSIATDR FIARDMP LD++L
Sbjct 61 SGLTEEVRASTVTLAEAEKLVLDYIRAHVTTAGAVPLAGNSIATDRGFIARDMPELDAYL 120
Query 126 HYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVPQPGPS 185
HYRM+DVSSIKEL RRWYPRIYFGQP KGL HRALADI ESIRELR+YR AFVP PGP
Sbjct 121 HYRMVDVSSIKELSRRWYPRIYFGQPEKGLAHRALADIRESIRELRYYRAAAFVPAPGPD 180
Query 186 TSEIAAVVAEL 196
+A +V++L
Sbjct 181 ADALATIVSDL 191
>gi|302529267|ref|ZP_07281609.1| oligoribonuclease [Streptomyces sp. AA4]
gi|302438162|gb|EFL09978.1| oligoribonuclease [Streptomyces sp. AA4]
Length=202
Score = 287 bits (735), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 137/196 (70%), Positives = 158/196 (81%), Gaps = 0/196 (0%)
Query 1 VQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
+ D LVWIDCEMTGLDLG D LIEIAALVTDADLN+LG+GVD+V+HADDA L GM VV
Sbjct 1 MNDHLVWIDCEMTGLDLGKDALIEIAALVTDADLNVLGEGVDIVIHADDAKLDGMPQVVH 60
Query 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
+MH++SGL +EV+AST LA AE VL+YI E V P +APLAGNSIATDR FIARDMP
Sbjct 61 DMHAKSGLTEEVRASTTTLAEAEQRVLEYIREWVPDPASAPLAGNSIATDRGFIARDMPE 120
Query 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
LD LHYRM+DVSS+KEL RRWYPRIY+ +P KGL HRALADI ES+ EL +YR AFVP
Sbjct 121 LDRHLHYRMVDVSSVKELVRRWYPRIYYAKPEKGLAHRALADIKESVGELEYYRAIAFVP 180
Query 181 QPGPSTSEIAAVVAEL 196
QPGP++ E A AE+
Sbjct 181 QPGPTSDEAKAAAAEV 196
>gi|330466087|ref|YP_004403830.1| oligoribonuclease [Verrucosispora maris AB-18-032]
gi|328809058|gb|AEB43230.1| oligoribonuclease [Verrucosispora maris AB-18-032]
Length=185
Score = 286 bits (731), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 137/185 (75%), Positives = 152/185 (83%), Gaps = 0/185 (0%)
Query 12 MTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVAEMHSRSGLIDE 71
MTGLDLGSDKLIE+AALVTD DLN+LGDGVDVV+HADDAAL M ++V MH +SGL +E
Sbjct 1 MTGLDLGSDKLIEVAALVTDPDLNVLGDGVDVVIHADDAALDAMPEIVRTMHGKSGLTEE 60
Query 72 VKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPTLDSFLHYRMID 131
V+ STV LA AE MVLDY++ HVK P+TAPL GNSIATDR FIARDMP LD+ LHYRMID
Sbjct 61 VRRSTVTLAEAEDMVLDYVSRHVKDPRTAPLCGNSIATDRGFIARDMPRLDAHLHYRMID 120
Query 132 VSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVPQPGPSTSEIAA 191
VSSIKELCRRWYPR+YFGQP KGL HRALADI ESIREL +YRRT FVP PGP
Sbjct 121 VSSIKELCRRWYPRVYFGQPQKGLAHRALADIRESIRELEYYRRTIFVPLPGPDVDTAKG 180
Query 192 VVAEL 196
+ A L
Sbjct 181 IAAGL 185
>gi|331698794|ref|YP_004335033.1| Oligoribonuclease [Pseudonocardia dioxanivorans CB1190]
gi|326953483|gb|AEA27180.1| Oligoribonuclease [Pseudonocardia dioxanivorans CB1190]
Length=204
Score = 274 bits (700), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 128/186 (69%), Positives = 152/186 (82%), Gaps = 0/186 (0%)
Query 1 VQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
+ D LVWIDCEMTGLDL D LIEIA LVTD DLN+LG+GVDVV+HAD++AL+ M DVV
Sbjct 1 MNDRLVWIDCEMTGLDLQRDALIEIAVLVTDGDLNVLGEGVDVVIHADESALAAMPDVVR 60
Query 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
+MH+RSGL +EV+ STV L AE VL Y+ EHV P +APLAGNSIATDR F+ARDMP
Sbjct 61 DMHARSGLTEEVRRSTVTLQEAEQAVLAYVREHVPDPVSAPLAGNSIATDRGFLARDMPE 120
Query 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
LD+ LHYRM+DVSSIKELCRRW+PR+++ +P KGL HRALADI ESIREL +YR T FV
Sbjct 121 LDAHLHYRMVDVSSIKELCRRWFPRVFYAKPEKGLAHRALADIRESIRELAYYRATLFVA 180
Query 181 QPGPST 186
PGP++
Sbjct 181 PPGPTS 186
>gi|317507722|ref|ZP_07965427.1| exonuclease [Segniliparus rugosus ATCC BAA-974]
gi|316253975|gb|EFV13340.1| exonuclease [Segniliparus rugosus ATCC BAA-974]
Length=202
Score = 272 bits (695), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 131/198 (67%), Positives = 156/198 (79%), Gaps = 0/198 (0%)
Query 2 QDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVAE 61
+D L+WIDCEMTGL G D+LIEIAALVTD DLNIL +G+D+V+HA + L+ M + V
Sbjct 5 KDRLLWIDCEMTGLRPGHDQLIEIAALVTDGDLNILDEGIDLVIHASEDKLAQMDEYVTN 64
Query 62 MHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPTL 121
MH+ SGL D V+A+T+ LA AEA VL Y+ E P+TA LAGNSIATDR+F+A+DMP L
Sbjct 65 MHASSGLTDAVRAATLSLAEAEAKVLAYVKERFPAPRTAILAGNSIATDRSFLAKDMPEL 124
Query 122 DSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVPQ 181
D++LHYRM+DVS+IKEL RRWYPRIYF QP KGL HRALADI ESIRELR+YR TAFV Q
Sbjct 125 DAWLHYRMVDVSTIKELSRRWYPRIYFNQPEKGLAHRALADIVESIRELRYYRATAFVAQ 184
Query 182 PGPSTSEIAAVVAELSDG 199
PGP+ EI A V L DG
Sbjct 185 PGPTGEEIEASVKALVDG 202
>gi|296392793|ref|YP_003657677.1| exonuclease RNase T and DNA polymerase III [Segniliparus rotundus
DSM 44985]
gi|296179940|gb|ADG96846.1| Exonuclease RNase T and DNA polymerase III [Segniliparus rotundus
DSM 44985]
Length=202
Score = 271 bits (692), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 127/198 (65%), Positives = 158/198 (80%), Gaps = 0/198 (0%)
Query 2 QDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVAE 61
+D L+W+DCEMTGL G D+LIEIAALVTD +LNI+ DG+D+V+HA++ L+ M + V
Sbjct 5 KDRLLWVDCEMTGLRPGFDQLIEIAALVTDGELNIIDDGIDLVIHAEEDKLAQMDEYVTN 64
Query 62 MHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPTL 121
MH+ SGL + V+AS + LA AE VL Y+ E P+TA LAGNSIATDR+F+A+DMP L
Sbjct 65 MHASSGLTEAVRASELSLAEAEERVLAYVKERFPAPRTAILAGNSIATDRSFLAKDMPEL 124
Query 122 DSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVPQ 181
D++LHYRM+DVS+IKEL RRWYPRIYF QP KGL HRALADI ES+RELR+YR TAFV Q
Sbjct 125 DAWLHYRMVDVSTIKELSRRWYPRIYFNQPEKGLAHRALADIVESVRELRYYRSTAFVAQ 184
Query 182 PGPSTSEIAAVVAELSDG 199
PGPS+ EI +VV EL+ G
Sbjct 185 PGPSSEEIESVVKELTTG 202
>gi|324999723|ref|ZP_08120835.1| oligoribonuclease [Pseudonocardia sp. P1]
Length=213
Score = 270 bits (691), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 128/186 (69%), Positives = 151/186 (82%), Gaps = 0/186 (0%)
Query 1 VQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
+ D LVWIDCEMTGLDLGSD LIEIAALVTD DLN+LG+GVDVV+ DDA L M DVV
Sbjct 1 MTDRLVWIDCEMTGLDLGSDALIEIAALVTDGDLNVLGEGVDVVIACDDAQLDAMPDVVR 60
Query 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
+MH+RSGL +EV+A+TV +A AE VL YI HV +TAPLAGNSIATDR F+ARDM
Sbjct 61 DMHARSGLTEEVRAATVTIAEAEERVLAYIRAHVPDARTAPLAGNSIATDRGFLARDMQE 120
Query 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
LD++LHYRMIDVSS+KEL RRW+PR+++ +P KGL HRALADI ESIREL +YR+ FV
Sbjct 121 LDAYLHYRMIDVSSVKELARRWFPRVFYAKPEKGLAHRALADIQESIRELAYYRKALFVA 180
Query 181 QPGPST 186
PGPS+
Sbjct 181 PPGPSS 186
>gi|300788911|ref|YP_003769202.1| oligoribonuclease [Amycolatopsis mediterranei U32]
gi|299798425|gb|ADJ48800.1| oligoribonuclease [Amycolatopsis mediterranei U32]
gi|340530535|gb|AEK45740.1| oligoribonuclease [Amycolatopsis mediterranei S699]
Length=191
Score = 268 bits (686), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 126/175 (72%), Positives = 147/175 (84%), Gaps = 0/175 (0%)
Query 12 MTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVAEMHSRSGLIDE 71
MTGLDLG + LIEIAALVTDA+LN+LGDGVD+V+HAD+ L+GM ++V EMH+ SGL +E
Sbjct 1 MTGLDLGKEALIEIAALVTDAELNVLGDGVDIVIHADEEKLAGMPEIVREMHAHSGLTEE 60
Query 72 VKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPTLDSFLHYRMID 131
V+ STV L AE VLDYI EHV +P TAPLAGNSIATDR FIARDMP LD+ LHYRM+D
Sbjct 61 VRRSTVTLEEAERRVLDYIREHVPEPGTAPLAGNSIATDRGFIARDMPALDAHLHYRMVD 120
Query 132 VSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVPQPGPST 186
VSS+KEL RRWYPRIY+ +P KGL HRALADI ESI EL +YRR AFVPQPGP++
Sbjct 121 VSSVKELVRRWYPRIYYAKPEKGLAHRALADIRESIGELDYYRRVAFVPQPGPTS 175
>gi|284990013|ref|YP_003408567.1| Exonuclease RNase T and DNA polymerase III [Geodermatophilus
obscurus DSM 43160]
gi|284063258|gb|ADB74196.1| Exonuclease RNase T and DNA polymerase III [Geodermatophilus
obscurus DSM 43160]
Length=225
Score = 262 bits (669), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 122/183 (67%), Positives = 148/183 (81%), Gaps = 0/183 (0%)
Query 5 LVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVAEMHS 64
LVWIDCEMTGLDL DKLIE+A LVTD++LN+L G+D+V+ ADDAAL GM++VV EMH+
Sbjct 8 LVWIDCEMTGLDLTRDKLIEVAVLVTDSELNVLDPGLDLVISADDAALEGMVEVVTEMHA 67
Query 65 RSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPTLDSF 124
+SGL + V+AST+ +A AE +L Y+ V + +TAPL GNSI TDR F+ARDMP LD
Sbjct 68 KSGLTEAVRASTLTVAEAEQQLLAYVKRFVPERRTAPLCGNSIGTDRGFLARDMPELDDH 127
Query 125 LHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVPQPGP 184
LHYRMIDVSS+KEL RRW+PR+YF QP KGL HRALADI ES+REL +YR+T FV PGP
Sbjct 128 LHYRMIDVSSVKELARRWFPRVYFAQPQKGLAHRALADIIESVRELAYYRQTLFVDGPGP 187
Query 185 STS 187
STS
Sbjct 188 STS 190
>gi|302534542|ref|ZP_07286884.1| oligoribonuclease [Streptomyces sp. C]
gi|302443437|gb|EFL15253.1| oligoribonuclease [Streptomyces sp. C]
Length=200
Score = 261 bits (666), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 122/195 (63%), Positives = 148/195 (76%), Gaps = 1/195 (0%)
Query 1 VQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
+ D +VWIDCEMTGL L D LIE+AALVTD++LN+LG+GVD+V+ DAAL M DVV
Sbjct 1 MNDRMVWIDCEMTGLSLTDDALIEVAALVTDSELNVLGEGVDIVIRPPDAALETMPDVVR 60
Query 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
EMH+ SGL+DE+ A T LA AEA VL Y+ EHVK+P+ APL GNS+ TDR F++RDMP
Sbjct 61 EMHTASGLLDELAAGTT-LADAEAQVLAYVREHVKEPRKAPLCGNSVGTDRGFLSRDMPA 119
Query 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
L+S LHYR++DVSS+KEL RRWYPR YF PPK HRALADI ESI ELR+YR FVP
Sbjct 120 LESHLHYRIVDVSSVKELARRWYPRAYFNSPPKNGNHRALADIKESIAELRYYREAVFVP 179
Query 181 QPGPSTSEIAAVVAE 195
QPGP + + A+
Sbjct 180 QPGPDSDTARTIAAK 194
>gi|336177462|ref|YP_004582837.1| Oligoribonuclease [Frankia symbiont of Datisca glomerata]
gi|334858442|gb|AEH08916.1| Oligoribonuclease [Frankia symbiont of Datisca glomerata]
Length=270
Score = 256 bits (655), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 123/207 (60%), Positives = 152/207 (74%), Gaps = 0/207 (0%)
Query 3 DELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVAEM 62
D LVWIDCEMTGLD SD L+E+A LVTD++LNILG GVDVV+ A + AL+GM VV +M
Sbjct 2 DRLVWIDCEMTGLDAASDLLLEVACLVTDSELNILGGGVDVVVSAPETALAGMDAVVQQM 61
Query 63 HSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPTLD 122
H+ SGL + V+AST+ +A AE VLDY+ + + APL GNSIATDR F+AR MP LD
Sbjct 62 HATSGLTEAVRASTLTVADAERQVLDYVRDQIPDAGKAPLCGNSIATDRNFLARYMPALD 121
Query 123 SFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVPQP 182
S+LHYRM+DVS++KEL RRWYPR Y+ P K HRALADI ESI ELR+YR+ FVPQP
Sbjct 122 SYLHYRMVDVSTVKELARRWYPRAYYAAPAKRGGHRALADIQESIDELRYYRKAIFVPQP 181
Query 183 GPSTSEIAAVVAELSDGAGAQEETDSA 209
GP++ A E++ AG + TD A
Sbjct 182 GPTSEFARATAQEITRAAGRETGTDDA 208
>gi|320010661|gb|ADW05511.1| Exonuclease RNase T and DNA polymerase III [Streptomyces flavogriseus
ATCC 33331]
Length=202
Score = 256 bits (653), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 121/203 (60%), Positives = 149/203 (74%), Gaps = 1/203 (0%)
Query 1 VQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVA 60
+ D +VWIDCEMTGL L D LIE+AALVTD++LN+LG+GVD+V+ DAAL M +VV
Sbjct 1 MNDRMVWIDCEMTGLSLADDALIEVAALVTDSELNVLGEGVDIVIRPPDAALETMPEVVR 60
Query 61 EMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPT 120
+MH+ SGL+DE+ T LA AE VL YI EHVK+P APL GNS+ TDR F+ARDMP+
Sbjct 61 QMHTASGLLDELAGGTT-LADAEERVLAYIREHVKEPGKAPLCGNSVGTDRGFLARDMPS 119
Query 121 LDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPKGLTHRALADIHESIRELRFYRRTAFVP 180
L+ FLHYR++DVSS+KEL RRWYPR YF P K HRALADI +SI ELR+YR FVP
Sbjct 120 LEGFLHYRIVDVSSVKELARRWYPRAYFNSPEKNGNHRALADIRDSITELRYYRDAVFVP 179
Query 181 QPGPSTSEIAAVVAELSDGAGAQ 203
QPGP ++ + A + AG Q
Sbjct 180 QPGPDSARAKEIAARHTPPAGQQ 202
Lambda K H
0.318 0.133 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 257507162856
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40