BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2513
Length=140
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609650|ref|NP_217029.1| hypothetical protein Rv2513 [Mycoba... 275 2e-72
gi|31793694|ref|NP_856187.1| hypothetical protein Mb2542 [Mycoba... 273 7e-72
gi|15842043|ref|NP_337080.1| hypothetical protein MT2589 [Mycoba... 247 5e-64
gi|153837614|ref|ZP_01990281.1| chitin-binding protein [Vibrio p... 40.8 0.075
gi|260902254|ref|ZP_05910649.1| chitin-binding protein [Vibrio p... 40.4 0.081
gi|328469934|gb|EGF40845.1| spindolin-like protein [Vibrio parah... 38.9 0.23
gi|28899947|ref|NP_799602.1| spindolin-like protein [Vibrio para... 38.9 0.23
gi|269964812|ref|ZP_06179049.1| chitinase, putative [Vibrio algi... 38.9 0.24
gi|239834207|ref|ZP_04682535.1| Integral membrane protein DUF112... 37.4 0.66
gi|153011239|ref|YP_001372453.1| hypothetical protein Oant_3919 ... 37.4 0.73
gi|91226708|ref|ZP_01261397.1| spindolin-related protein [Vibrio... 37.0 0.92
gi|254227532|ref|ZP_04920964.1| chitin-binding protein [Vibrio s... 37.0 0.94
gi|153832671|ref|ZP_01985338.1| chitin-binding protein [Vibrio h... 36.6 1.2
gi|33469055|ref|NP_878260.1| EMILIN-3 [Mus musculus] >gi|3753776... 34.7 4.8
gi|262089651|gb|ACY24747.1| protein of unknown function [uncultu... 34.7 5.1
gi|254294992|ref|YP_003061015.1| glycoside hydrolase [Hirschia b... 34.7 5.5
>gi|15609650|ref|NP_217029.1| hypothetical protein Rv2513 [Mycobacterium tuberculosis H37Rv]
gi|148662350|ref|YP_001283873.1| hypothetical protein MRA_2540 [Mycobacterium tuberculosis H37Ra]
gi|167966788|ref|ZP_02549065.1| hypothetical protein MtubH3_01453 [Mycobacterium tuberculosis
H37Ra]
10 more sequence titles
Length=140
Score = 275 bits (702), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 139/140 (99%), Positives = 140/140 (100%), Gaps = 0/140 (0%)
Query 1 VDDIAAFKLDSLPDITFTVTRAISSGGENPAGFLNFAARREQPEILGGGGRPGPVGPEAV 60
+DDIAAFKLDSLPDITFTVTRAISSGGENPAGFLNFAARREQPEILGGGGRPGPVGPEAV
Sbjct 1 MDDIAAFKLDSLPDITFTVTRAISSGGENPAGFLNFAARREQPEILGGGGRPGPVGPEAV 60
Query 61 DTPRIRGGKVPFVFRTLPGYTFYASQIEPRVGDPEGPTLLAGFGNIPETSQRSPGWIRIT 120
DTPRIRGGKVPFVFRTLPGYTFYASQIEPRVGDPEGPTLLAGFGNIPETSQRSPGWIRIT
Sbjct 61 DTPRIRGGKVPFVFRTLPGYTFYASQIEPRVGDPEGPTLLAGFGNIPETSQRSPGWIRIT 120
Query 121 CTGPDDDEELEFFGFAGPES 140
CTGPDDDEELEFFGFAGPES
Sbjct 121 CTGPDDDEELEFFGFAGPES 140
>gi|31793694|ref|NP_856187.1| hypothetical protein Mb2542 [Mycobacterium bovis AF2122/97]
gi|121638396|ref|YP_978620.1| hypothetical protein BCG_2534 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148823710|ref|YP_001288464.1| hypothetical protein TBFG_12535 [Mycobacterium tuberculosis F11]
61 more sequence titles
Length=140
Score = 273 bits (698), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 138/140 (99%), Positives = 139/140 (99%), Gaps = 0/140 (0%)
Query 1 VDDIAAFKLDSLPDITFTVTRAISSGGENPAGFLNFAARREQPEILGGGGRPGPVGPEAV 60
+DDIAAFKLDSLPDITFTVTRAISSGGENPAGFLNFAARREQPEILGGGGRPGPVGPEAV
Sbjct 1 MDDIAAFKLDSLPDITFTVTRAISSGGENPAGFLNFAARREQPEILGGGGRPGPVGPEAV 60
Query 61 DTPRIRGGKVPFVFRTLPGYTFYASQIEPRVGDPEGPTLLAGFGNIPETSQRSPGWIRIT 120
DTPRIRGGKVPFVFRTLPGYTFYASQIEPRVGDPEGPTLLAGFGNIPETSQRSPGWIRIT
Sbjct 61 DTPRIRGGKVPFVFRTLPGYTFYASQIEPRVGDPEGPTLLAGFGNIPETSQRSPGWIRIT 120
Query 121 CTGPDDDEELEFFGFAGPES 140
C GPDDDEELEFFGFAGPES
Sbjct 121 CKGPDDDEELEFFGFAGPES 140
>gi|15842043|ref|NP_337080.1| hypothetical protein MT2589 [Mycobacterium tuberculosis CDC1551]
gi|13882322|gb|AAK46894.1| hypothetical protein MT2589 [Mycobacterium tuberculosis CDC1551]
Length=140
Score = 247 bits (630), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 137/140 (98%), Positives = 139/140 (99%), Gaps = 0/140 (0%)
Query 1 VDDIAAFKLDSLPDITFTVTRAISSGGENPAGFLNFAARREQPEILGGGGRPGPVGPEAV 60
+DDIAAFKLDSLPDITFTVTRAISSGGENPAGFLNFAARREQPEILGGGGRPGPVGPEAV
Sbjct 1 MDDIAAFKLDSLPDITFTVTRAISSGGENPAGFLNFAARREQPEILGGGGRPGPVGPEAV 60
Query 61 DTPRIRGGKVPFVFRTLPGYTFYASQIEPRVGDPEGPTLLAGFGNIPETSQRSPGWIRIT 120
DTPRIRGGKVPFVFRTLPGYTFYASQIEPRVGDPEGPTLLAGFGNIPETSQRSPGWIRIT
Sbjct 61 DTPRIRGGKVPFVFRTLPGYTFYASQIEPRVGDPEGPTLLAGFGNIPETSQRSPGWIRIT 120
Query 121 CTGPDDDEELEFFGFAGPES 140
C GPDDDEELEFFGF+GPES
Sbjct 121 CKGPDDDEELEFFGFSGPES 140
>gi|153837614|ref|ZP_01990281.1| chitin-binding protein [Vibrio parahaemolyticus AQ3810]
gi|149749006|gb|EDM59825.1| chitin-binding protein [Vibrio parahaemolyticus AQ3810]
Length=392
Score = 40.8 bits (94), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 40/137 (30%), Positives = 59/137 (44%), Gaps = 19/137 (13%)
Query 11 SLPDITFTVTRAISSGGENPAGFLNFAARREQPEILGGGGRPGPVGPEAVDTPRIRGGKV 70
+LP ++ + A+SS N G++ F + R+ L GG + +A G
Sbjct 6 TLPLLSLSAVAALSSFNVNAHGWVEFPSARQNTCYLDGGFWTNEISNQACKAAFEESGAY 65
Query 71 PFVFRT-----LPGYTFYASQIEPRVGDPE----GPTLLAGFGNIPETSQRSPGWIRITC 121
PFV R+ +P Y A ++ V D E G G NIP SP W R
Sbjct 66 PFVQRSEIAANVPNYRDMA-HVQAVVRDGELCSAGDAAKKGL-NIP-----SPNWQRTNV 118
Query 122 TGPDDDEELE--FFGFA 136
T PD + ++E F+G A
Sbjct 119 T-PDANNQIELVFYGKA 134
>gi|260902254|ref|ZP_05910649.1| chitin-binding protein [Vibrio parahaemolyticus AQ4037]
gi|308110503|gb|EFO48043.1| chitin-binding protein [Vibrio parahaemolyticus AQ4037]
Length=392
Score = 40.4 bits (93), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 40/137 (30%), Positives = 59/137 (44%), Gaps = 19/137 (13%)
Query 11 SLPDITFTVTRAISSGGENPAGFLNFAARREQPEILGGGGRPGPVGPEAVDTPRIRGGKV 70
+LP ++ + A+SS N G++ F + R+ L GG + +A G
Sbjct 6 TLPLLSLSAVAALSSFNVNAHGWVEFPSARQNTCYLDGGFWTNEISNQACKAAFEESGAY 65
Query 71 PFVFRT-----LPGYTFYASQIEPRVGDPE----GPTLLAGFGNIPETSQRSPGWIRITC 121
PFV R+ +P Y A ++ V D E G G NIP SP W R
Sbjct 66 PFVQRSEIAANVPNYRDMA-HVQAVVRDGELCSAGDAAKKGL-NIP-----SPNWQRTNV 118
Query 122 TGPDDDEELE--FFGFA 136
T PD + ++E F+G A
Sbjct 119 T-PDANNQIELVFYGKA 134
>gi|328469934|gb|EGF40845.1| spindolin-like protein [Vibrio parahaemolyticus 10329]
Length=392
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/137 (30%), Positives = 59/137 (44%), Gaps = 19/137 (13%)
Query 11 SLPDITFTVTRAISSGGENPAGFLNFAARREQPEILGGGGRPGPVGPEAVDTPRIRGGKV 70
+LP ++ + A+SS N G++ F + R+ L GG + +A G
Sbjct 6 TLPLLSLSAVAALSSFNVNAHGWVEFPSARQNTCYLDGGFWTNEIPNQACKAAFEESGAY 65
Query 71 PFVFRT-----LPGYTFYASQIEPRVGDPE----GPTLLAGFGNIPETSQRSPGWIRITC 121
PFV R+ +P Y A ++ V D E G G NIP SP W R
Sbjct 66 PFVQRSEIAANVPNYRDMA-HVQAVVRDGELCSAGDAAKKGL-NIP-----SPNWQRTNV 118
Query 122 TGPDDDEELE--FFGFA 136
T PD + ++E F+G A
Sbjct 119 T-PDANNQIELVFYGKA 134
>gi|28899947|ref|NP_799602.1| spindolin-like protein [Vibrio parahaemolyticus RIMD 2210633]
gi|260363241|ref|ZP_05776110.1| chitin-binding protein [Vibrio parahaemolyticus K5030]
gi|260880528|ref|ZP_05892883.1| chitin-binding protein [Vibrio parahaemolyticus AN-5034]
gi|260898519|ref|ZP_05907015.1| chitin-binding protein [Vibrio parahaemolyticus Peru-466]
gi|28808230|dbj|BAC61435.1| spindolin-related protein [Vibrio parahaemolyticus RIMD 2210633]
gi|308084967|gb|EFO34662.1| chitin-binding protein [Vibrio parahaemolyticus Peru-466]
gi|308092003|gb|EFO41698.1| chitin-binding protein [Vibrio parahaemolyticus AN-5034]
gi|308112103|gb|EFO49643.1| chitin-binding protein [Vibrio parahaemolyticus K5030]
Length=392
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/137 (30%), Positives = 59/137 (44%), Gaps = 19/137 (13%)
Query 11 SLPDITFTVTRAISSGGENPAGFLNFAARREQPEILGGGGRPGPVGPEAVDTPRIRGGKV 70
+LP ++ + A+SS N G++ F + R+ L GG + +A G
Sbjct 6 TLPLLSLSAVAALSSFNVNAHGWVEFPSARQNTCYLDGGFWTNEIPNQACKAAFEESGAY 65
Query 71 PFVFRT-----LPGYTFYASQIEPRVGDPE----GPTLLAGFGNIPETSQRSPGWIRITC 121
PFV R+ +P Y A ++ V D E G G NIP SP W R
Sbjct 66 PFVQRSEIAANVPNYRDMA-HVQAVVRDGELCSAGDAAKKGL-NIP-----SPNWQRTNV 118
Query 122 TGPDDDEELE--FFGFA 136
T PD + ++E F+G A
Sbjct 119 T-PDANNQIELVFYGKA 134
>gi|269964812|ref|ZP_06179049.1| chitinase, putative [Vibrio alginolyticus 40B]
gi|269830472|gb|EEZ84694.1| chitinase, putative [Vibrio alginolyticus 40B]
Length=392
Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/137 (30%), Positives = 59/137 (44%), Gaps = 19/137 (13%)
Query 11 SLPDITFTVTRAISSGGENPAGFLNFAARREQPEILGGGGRPGPVGPEAVDTPRIRGGKV 70
+LP ++ + A+SS N G++ F + R+ L GG + +A G
Sbjct 6 TLPLLSLSAVAALSSFNVNAHGWVEFPSARQNTCYLDGGFWTNEIPNQACKAAFEESGAY 65
Query 71 PFVFRT-----LPGYTFYASQIEPRVGDPE----GPTLLAGFGNIPETSQRSPGWIRITC 121
PFV R+ +P Y ++ V D E G T G NIP SP W R
Sbjct 66 PFVQRSEIAANVPNYRD-MDHVKAVVRDGELCSAGDTAKKGL-NIP-----SPNWQRTNV 118
Query 122 TGPDDDEELE--FFGFA 136
T PD + ++E F+G A
Sbjct 119 T-PDANNQIELVFYGKA 134
>gi|239834207|ref|ZP_04682535.1| Integral membrane protein DUF112 [Ochrobactrum intermedium LMG
3301]
gi|239822270|gb|EEQ93839.1| Integral membrane protein DUF112 [Ochrobactrum intermedium LMG
3301]
Length=514
Score = 37.4 bits (85), Expect = 0.66, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 31/60 (52%), Gaps = 3/60 (5%)
Query 22 AISSGGENPAGFLNFAARRE---QPEILGGGGRPGPVGPEAVDTPRIRGGKVPFVFRTLP 78
A+ +GG + + FL+++A R+ PE G G G GPEA + G VP + LP
Sbjct 266 AMPAGGADVSSFLSYSAERQFSKHPEEFGKGAIEGVAGPEAANNASAAGTLVPLLTLGLP 325
>gi|153011239|ref|YP_001372453.1| hypothetical protein Oant_3919 [Ochrobactrum anthropi ATCC 49188]
gi|151563127|gb|ABS16624.1| protein of unknown function DUF112 transmembrane [Ochrobactrum
anthropi ATCC 49188]
Length=514
Score = 37.4 bits (85), Expect = 0.73, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 31/60 (52%), Gaps = 3/60 (5%)
Query 22 AISSGGENPAGFLNFAARRE---QPEILGGGGRPGPVGPEAVDTPRIRGGKVPFVFRTLP 78
A+ +GG + + FL+++A R+ PE G G G GPEA + G VP + LP
Sbjct 266 AMPAGGADVSSFLSYSAERQFSKHPEEFGKGAIEGVAGPEAANNASAAGTLVPLLTLGLP 325
>gi|91226708|ref|ZP_01261397.1| spindolin-related protein [Vibrio alginolyticus 12G01]
gi|91189005|gb|EAS75288.1| spindolin-related protein [Vibrio alginolyticus 12G01]
Length=392
Score = 37.0 bits (84), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 39/137 (29%), Positives = 58/137 (43%), Gaps = 19/137 (13%)
Query 11 SLPDITFTVTRAISSGGENPAGFLNFAARREQPEILGGGGRPGPVGPEAVDTPRIRGGKV 70
+LP ++ + A+SS N G++ F + R+ L GG + +A G
Sbjct 6 TLPLLSLSAVAALSSFNVNAHGWVEFPSARQNTCYLDGGFWTNEIPNQACKAAFEESGAY 65
Query 71 PFVFRT-----LPGYTFYASQIEPRVGDPE----GPTLLAGFGNIPETSQRSPGWIRITC 121
PFV R+ +P Y ++ V D E G G NIP SP W R
Sbjct 66 PFVQRSEIAANVPNYRD-MEHVKAVVRDGELCSAGDAAKKGL-NIP-----SPNWQRTNV 118
Query 122 TGPDDDEELE--FFGFA 136
T PD + ++E F+G A
Sbjct 119 T-PDANNQIELVFYGKA 134
>gi|254227532|ref|ZP_04920964.1| chitin-binding protein [Vibrio sp. Ex25]
gi|262396205|ref|YP_003288058.1| spindolin-related protein [Vibrio sp. Ex25]
gi|151940144|gb|EDN58970.1| chitin-binding protein [Vibrio sp. Ex25]
gi|262339799|gb|ACY53593.1| spindolin-related protein [Vibrio sp. Ex25]
Length=392
Score = 37.0 bits (84), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 39/137 (29%), Positives = 58/137 (43%), Gaps = 19/137 (13%)
Query 11 SLPDITFTVTRAISSGGENPAGFLNFAARREQPEILGGGGRPGPVGPEAVDTPRIRGGKV 70
+LP ++ + A+SS N G++ F + R+ L GG + +A G
Sbjct 6 TLPLLSLSAVAALSSFNVNAHGWVEFPSARQNTCYLDGGFWTNEIPNQACKAAFEESGAY 65
Query 71 PFVFRT-----LPGYTFYASQIEPRVGDPE----GPTLLAGFGNIPETSQRSPGWIRITC 121
PFV R+ +P Y ++ V D E G G NIP SP W R
Sbjct 66 PFVQRSEIAANVPNYRD-MEHVKAVVRDGELCSAGDAAKKGL-NIP-----SPNWQRTNV 118
Query 122 TGPDDDEELE--FFGFA 136
T PD + ++E F+G A
Sbjct 119 T-PDANNQIELVFYGKA 134
>gi|153832671|ref|ZP_01985338.1| chitin-binding protein [Vibrio harveyi HY01]
gi|148871016|gb|EDL69900.1| chitin-binding protein [Vibrio harveyi HY01]
Length=392
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/137 (30%), Positives = 58/137 (43%), Gaps = 19/137 (13%)
Query 11 SLPDITFTVTRAISSGGENPAGFLNFAARREQPEILGGGGRPGPVGPEAVDTPRIRGGKV 70
+LP ++ A+SS + G++ F + R+ L GG + +A G
Sbjct 6 TLPLVSLGAMAALSSFNVSAHGWVEFPSARQNTCYLDGGFWTNEIPNQACQAAYDESGAY 65
Query 71 PFVFRT-----LPGYTFYASQIEPRVGDPE----GPTLLAGFGNIPETSQRSPGWIRITC 121
PFV R+ +P Y A ++ V D E G G NIP SP W R
Sbjct 66 PFVQRSEIAANVPNYRDMA-HVKAIVRDGELCSAGDAAKKGL-NIP-----SPNWQRTNV 118
Query 122 TGPDDDEELE--FFGFA 136
T PD + ++E FFG A
Sbjct 119 T-PDANNQIELVFFGKA 134
>gi|33469055|ref|NP_878260.1| EMILIN-3 [Mus musculus]
gi|37537761|sp|P59900.1|EMIL3_MOUSE RecName: Full=EMILIN-3; AltName: Full=EMILIN-5; AltName: Full=Elastin
microfibril interface located protein 5; Short=Elastin
microfibril interfacer 5; AltName: Full=Elastin microfibril
interface-located protein 3; Short=Elastin microfibril interfacer
3; Flags: Precursor
gi|32451975|gb|AAH54738.1| Elastin microfibril interfacer 3 [Mus musculus]
gi|34785461|gb|AAH57619.1| Elastin microfibril interfacer 3 [Mus musculus]
gi|148674352|gb|EDL06299.1| elastin microfibril interfacer 3, isoform CRA_a [Mus musculus]
Length=758
Score = 34.7 bits (78), Expect = 4.8, Method: Composition-based stats.
Identities = 31/83 (38%), Positives = 36/83 (44%), Gaps = 19/83 (22%)
Query 42 QPEI----LGGGGRPGPVGPEAVDTPRIRGGKVPF----------VFRTLPGYTFYASQI 87
+P+I LG G RP P EA PR R G+ PF + TL G AS
Sbjct 145 EPQIPLGQLGPGPRPSPYSREA-PRPRGRKGQGPFGERLEQRLSQAYGTLSG--LVASHE 201
Query 88 EPR--VGDPEGPTLLAGFGNIPE 108
P GD P + GFG IPE
Sbjct 202 NPNRITGDSRAPVVPIGFGVIPE 224
>gi|262089651|gb|ACY24747.1| protein of unknown function [uncultured organism]
Length=515
Score = 34.7 bits (78), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (52%), Gaps = 3/60 (5%)
Query 22 AISSGGENPAGFLNFAARR---EQPEILGGGGRPGPVGPEAVDTPRIRGGKVPFVFRTLP 78
A+ +GG + A FL+++A + + PE G G G GPEA + G VP + LP
Sbjct 266 AMPAGGADVASFLSYSAEKNFSKHPEEFGHGAIEGVAGPEAANNASAAGTLVPLLTLGLP 325
>gi|254294992|ref|YP_003061015.1| glycoside hydrolase [Hirschia baltica ATCC 49814]
gi|254043523|gb|ACT60318.1| glycoside hydrolase family 3 domain protein [Hirschia baltica
ATCC 49814]
Length=725
Score = 34.7 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 33/101 (33%), Positives = 44/101 (44%), Gaps = 7/101 (6%)
Query 42 QPEILGGGGRPGPVGPEAVDTPR--IRGGKVPFVFRTLPGYTFYASQIEPRVGDPEGPTL 99
+P I+G R G G VD PR + G F G T + Q+E ++GD G +
Sbjct 59 RPYIMGQIDRIGIPGIHFVDGPRGCVSGEGTAFPVAMARGAT-WDVQLEEQIGDVIGQEV 117
Query 100 LAG----FGNIPETSQRSPGWIRITCTGPDDDEELEFFGFA 136
A FG I R P W R+ T D+ +L FG A
Sbjct 118 RARGGNFFGGICINLARHPAWGRVQETYGDEPYQLGSFGAA 158
Lambda K H
0.317 0.143 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 130895291376
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40