BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2516c
Length=267
Score E
Sequences producing significant alignments: (Bits) Value
gi|308371040|ref|ZP_07423639.2| hypothetical protein TMCG_01759 ... 540 8e-152
gi|15842047|ref|NP_337084.1| hypothetical protein MT2593 [Mycoba... 536 9e-151
gi|289758648|ref|ZP_06518026.1| conserved hypothetical protein [... 535 2e-150
gi|340627533|ref|YP_004745985.1| hypothetical protein MCAN_25581... 533 1e-149
gi|289570678|ref|ZP_06450905.1| hypothetical protein TBJG_04194 ... 486 1e-135
gi|289762684|ref|ZP_06522062.1| conserved hypothetical protein [... 397 8e-109
gi|289444047|ref|ZP_06433791.1| conserved hypothetical protein [... 385 3e-105
gi|289746298|ref|ZP_06505676.1| conserved hypothetical protein [... 368 7e-100
gi|41408857|ref|NP_961693.1| hypothetical protein MAP2759 [Mycob... 222 5e-56
gi|296166006|ref|ZP_06848458.1| conserved hypothetical protein [... 206 2e-51
gi|254776183|ref|ZP_05217699.1| hypothetical protein MaviaA2_161... 93.2 3e-17
gi|328906564|gb|EGG26339.1| hypothetical protein PA08_2307 [Prop... 55.8 6e-06
gi|313836539|gb|EFS74253.1| conserved domain protein [Propioniba... 55.8 6e-06
gi|340774847|gb|EGR97322.1| conserved domain protein [Propioniba... 54.7 2e-05
gi|315097633|gb|EFT69609.1| conserved domain protein [Propioniba... 53.5 3e-05
gi|269955334|ref|YP_003325123.1| phage transcriptional regulator... 52.8 5e-05
gi|314954538|gb|EFS98944.1| conserved domain protein [Propioniba... 52.4 6e-05
gi|314927711|gb|EFS91542.1| conserved domain protein [Propioniba... 52.4 7e-05
gi|227546139|ref|ZP_03976188.1| hypothetical protein HMPREF0175_... 52.4 8e-05
gi|314976779|gb|EFT20874.1| conserved domain protein [Propioniba... 52.0 8e-05
gi|261337888|ref|ZP_05965772.1| conserved hypothetical protein [... 50.8 2e-04
gi|256394629|ref|YP_003116193.1| hypothetical protein Caci_5493 ... 50.1 3e-04
gi|238062879|ref|ZP_04607588.1| hypothetical protein MCAG_03845 ... 49.3 6e-04
gi|271963380|ref|YP_003337576.1| hypothetical protein Sros_1845 ... 48.5 0.001
gi|302864860|ref|YP_003833497.1| hypothetical protein Micau_0354... 48.5 0.001
gi|158311925|ref|YP_001504433.1| serine/threonine protein kinase... 48.1 0.001
gi|288916872|ref|ZP_06411245.1| hypothetical protein FrEUN1fDRAF... 47.8 0.002
gi|312193921|ref|YP_004013982.1| hypothetical protein FraEuI1c_0... 46.2 0.004
gi|158318004|ref|YP_001510512.1| phage transcriptional regulator... 45.4 0.008
gi|108802426|ref|YP_642622.1| hypothetical protein Mmcs_5466 [My... 45.4 0.009
gi|111224819|ref|YP_715613.1| hypothetical protein FRAAL5453 [Fr... 43.9 0.026
gi|190410669|ref|YP_001965239.1| hypothetical protein pFRL1.33c ... 42.7 0.053
gi|315506716|ref|YP_004085603.1| hypothetical protein ML5_6007 [... 42.0 0.086
gi|290957418|ref|YP_003488600.1| hypothetical protein SCAB_29401... 41.6 0.11
gi|256825203|ref|YP_003149163.1| hypothetical protein Ksed_13700... 41.6 0.13
gi|318057438|ref|ZP_07976161.1| hypothetical protein SSA3_05828 ... 41.2 0.15
gi|158317272|ref|YP_001509780.1| hypothetical protein Franean1_5... 40.4 0.31
gi|330465356|ref|YP_004403099.1| hypothetical protein VAB18032_0... 40.0 0.35
gi|157961284|ref|YP_001501318.1| AraC family transcriptional reg... 40.0 0.37
gi|296164049|ref|ZP_06846672.1| serine/threonine protein kinase ... 39.3 0.56
gi|77919976|ref|YP_357791.1| RNA polymerase, sigma (32) factor [... 38.1 1.3
gi|312194171|ref|YP_004014232.1| sigma-70 region 4 domain protei... 37.7 1.9
gi|288916020|ref|ZP_06410402.1| hypothetical protein FrEUN1fDRAF... 36.2 4.8
gi|328761257|gb|EGF74788.1| hypothetical protein HMPREF9343_0104... 36.2 4.8
gi|168698682|ref|ZP_02730959.1| hypothetical protein GobsU_04114... 36.2 5.6
gi|323138995|ref|ZP_08074055.1| RNA polymerase, sigma 32 subunit... 35.8 6.3
gi|336179366|ref|YP_004584741.1| hypothetical protein FsymDg_353... 35.4 9.0
>gi|308371040|ref|ZP_07423639.2| hypothetical protein TMCG_01759 [Mycobacterium tuberculosis SUMu003]
gi|308329990|gb|EFP18841.1| hypothetical protein TMCG_01759 [Mycobacterium tuberculosis SUMu003]
Length=286
Score = 540 bits (1391), Expect = 8e-152, Method: Compositional matrix adjust.
Identities = 267/267 (100%), Positives = 267/267 (100%), Gaps = 0/267 (0%)
Query 1 VTADWVVTFTFDADPSMETMDAWETQLEGFDALVSRVPGHGIDVTVYAPGDWSVFDALAK 60
VTADWVVTFTFDADPSMETMDAWETQLEGFDALVSRVPGHGIDVTVYAPGDWSVFDALAK
Sbjct 20 VTADWVVTFTFDADPSMETMDAWETQLEGFDALVSRVPGHGIDVTVYAPGDWSVFDALAK 79
Query 61 MAGEVMPVVQAKSPIAVQIISEPEHRLRAEAFTTPELMSAAEIADELGVSRQRVHQLRST 120
MAGEVMPVVQAKSPIAVQIISEPEHRLRAEAFTTPELMSAAEIADELGVSRQRVHQLRST
Sbjct 80 MAGEVMPVVQAKSPIAVQIISEPEHRLRAEAFTTPELMSAAEIADELGVSRQRVHQLRST 139
Query 121 AGFPAPLADLRGGAVWDAAAVRRFAETWERKPGRPHTGTAKFAYSWAVGPAVGRSGKAPN 180
AGFPAPLADLRGGAVWDAAAVRRFAETWERKPGRPHTGTAKFAYSWAVGPAVGRSGKAPN
Sbjct 140 AGFPAPLADLRGGAVWDAAAVRRFAETWERKPGRPHTGTAKFAYSWAVGPAVGRSGKAPN 199
Query 181 VRWRVENPDKIRFVLRNIGDDIAEDVEIDLSRIDAITRNVPKKTVIRPGEGLNMVLIAAW 240
VRWRVENPDKIRFVLRNIGDDIAEDVEIDLSRIDAITRNVPKKTVIRPGEGLNMVLIAAW
Sbjct 200 VRWRVENPDKIRFVLRNIGDDIAEDVEIDLSRIDAITRNVPKKTVIRPGEGLNMVLIAAW 259
Query 241 GHPLPNQLYVRWAGQDEWAAVPLHPAH 267
GHPLPNQLYVRWAGQDEWAAVPLHPAH
Sbjct 260 GHPLPNQLYVRWAGQDEWAAVPLHPAH 286
>gi|15842047|ref|NP_337084.1| hypothetical protein MT2593 [Mycobacterium tuberculosis CDC1551]
gi|31793697|ref|NP_856190.1| hypothetical protein Mb2545c [Mycobacterium bovis AF2122/97]
gi|57116997|ref|NP_217032.2| hypothetical protein Rv2516c [Mycobacterium tuberculosis H37Rv]
60 more sequence titles
Length=267
Score = 536 bits (1382), Expect = 9e-151, Method: Compositional matrix adjust.
Identities = 266/267 (99%), Positives = 267/267 (100%), Gaps = 0/267 (0%)
Query 1 VTADWVVTFTFDADPSMETMDAWETQLEGFDALVSRVPGHGIDVTVYAPGDWSVFDALAK 60
+TADWVVTFTFDADPSMETMDAWETQLEGFDALVSRVPGHGIDVTVYAPGDWSVFDALAK
Sbjct 1 MTADWVVTFTFDADPSMETMDAWETQLEGFDALVSRVPGHGIDVTVYAPGDWSVFDALAK 60
Query 61 MAGEVMPVVQAKSPIAVQIISEPEHRLRAEAFTTPELMSAAEIADELGVSRQRVHQLRST 120
MAGEVMPVVQAKSPIAVQIISEPEHRLRAEAFTTPELMSAAEIADELGVSRQRVHQLRST
Sbjct 61 MAGEVMPVVQAKSPIAVQIISEPEHRLRAEAFTTPELMSAAEIADELGVSRQRVHQLRST 120
Query 121 AGFPAPLADLRGGAVWDAAAVRRFAETWERKPGRPHTGTAKFAYSWAVGPAVGRSGKAPN 180
AGFPAPLADLRGGAVWDAAAVRRFAETWERKPGRPHTGTAKFAYSWAVGPAVGRSGKAPN
Sbjct 121 AGFPAPLADLRGGAVWDAAAVRRFAETWERKPGRPHTGTAKFAYSWAVGPAVGRSGKAPN 180
Query 181 VRWRVENPDKIRFVLRNIGDDIAEDVEIDLSRIDAITRNVPKKTVIRPGEGLNMVLIAAW 240
VRWRVENPDKIRFVLRNIGDDIAEDVEIDLSRIDAITRNVPKKTVIRPGEGLNMVLIAAW
Sbjct 181 VRWRVENPDKIRFVLRNIGDDIAEDVEIDLSRIDAITRNVPKKTVIRPGEGLNMVLIAAW 240
Query 241 GHPLPNQLYVRWAGQDEWAAVPLHPAH 267
GHPLPNQLYVRWAGQDEWAAVPLHPAH
Sbjct 241 GHPLPNQLYVRWAGQDEWAAVPLHPAH 267
>gi|289758648|ref|ZP_06518026.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|294994376|ref|ZP_06800067.1| hypothetical protein Mtub2_07628 [Mycobacterium tuberculosis
210]
gi|298525988|ref|ZP_07013397.1| hypothetical protein TBAG_01407 [Mycobacterium tuberculosis 94_M4241A]
gi|289714212|gb|EFD78224.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|298495782|gb|EFI31076.1| hypothetical protein TBAG_01407 [Mycobacterium tuberculosis 94_M4241A]
gi|326904130|gb|EGE51063.1| hypothetical protein TBPG_02023 [Mycobacterium tuberculosis W-148]
gi|339295399|gb|AEJ47510.1| hypothetical protein CCDC5079_2320 [Mycobacterium tuberculosis
CCDC5079]
gi|339299019|gb|AEJ51129.1| hypothetical protein CCDC5180_2292 [Mycobacterium tuberculosis
CCDC5180]
Length=267
Score = 535 bits (1379), Expect = 2e-150, Method: Compositional matrix adjust.
Identities = 265/267 (99%), Positives = 266/267 (99%), Gaps = 0/267 (0%)
Query 1 VTADWVVTFTFDADPSMETMDAWETQLEGFDALVSRVPGHGIDVTVYAPGDWSVFDALAK 60
+TADWVVTFTFDADPSMETMDAWETQLEGFDALVSRVPGHGIDVTVYAPGDWSVFDALAK
Sbjct 1 MTADWVVTFTFDADPSMETMDAWETQLEGFDALVSRVPGHGIDVTVYAPGDWSVFDALAK 60
Query 61 MAGEVMPVVQAKSPIAVQIISEPEHRLRAEAFTTPELMSAAEIADELGVSRQRVHQLRST 120
M GEVMPVVQAKSPIAVQIISEPEHRLRAEAFTTPELMSAAEIADELGVSRQRVHQLRST
Sbjct 61 MVGEVMPVVQAKSPIAVQIISEPEHRLRAEAFTTPELMSAAEIADELGVSRQRVHQLRST 120
Query 121 AGFPAPLADLRGGAVWDAAAVRRFAETWERKPGRPHTGTAKFAYSWAVGPAVGRSGKAPN 180
AGFPAPLADLRGGAVWDAAAVRRFAETWERKPGRPHTGTAKFAYSWAVGPAVGRSGKAPN
Sbjct 121 AGFPAPLADLRGGAVWDAAAVRRFAETWERKPGRPHTGTAKFAYSWAVGPAVGRSGKAPN 180
Query 181 VRWRVENPDKIRFVLRNIGDDIAEDVEIDLSRIDAITRNVPKKTVIRPGEGLNMVLIAAW 240
VRWRVENPDKIRFVLRNIGDDIAEDVEIDLSRIDAITRNVPKKTVIRPGEGLNMVLIAAW
Sbjct 181 VRWRVENPDKIRFVLRNIGDDIAEDVEIDLSRIDAITRNVPKKTVIRPGEGLNMVLIAAW 240
Query 241 GHPLPNQLYVRWAGQDEWAAVPLHPAH 267
GHPLPNQLYVRWAGQDEWAAVPLHPAH
Sbjct 241 GHPLPNQLYVRWAGQDEWAAVPLHPAH 267
>gi|340627533|ref|YP_004745985.1| hypothetical protein MCAN_25581 [Mycobacterium canettii CIPT
140010059]
gi|340005723|emb|CCC44889.1| hypothetical protein MCAN_25581 [Mycobacterium canettii CIPT
140010059]
Length=267
Score = 533 bits (1372), Expect = 1e-149, Method: Compositional matrix adjust.
Identities = 264/267 (99%), Positives = 266/267 (99%), Gaps = 0/267 (0%)
Query 1 VTADWVVTFTFDADPSMETMDAWETQLEGFDALVSRVPGHGIDVTVYAPGDWSVFDALAK 60
+TADWVVTFTFDADPSMETMDAWETQLEGFDALVSRVPGHGIDVTVYAPGDWSVFDALAK
Sbjct 1 MTADWVVTFTFDADPSMETMDAWETQLEGFDALVSRVPGHGIDVTVYAPGDWSVFDALAK 60
Query 61 MAGEVMPVVQAKSPIAVQIISEPEHRLRAEAFTTPELMSAAEIADELGVSRQRVHQLRST 120
MAGEVMPVVQA+SPIAVQIISEPEHRLRAEAFTTPELMSAAEIADELGVSRQRVHQLRST
Sbjct 61 MAGEVMPVVQAESPIAVQIISEPEHRLRAEAFTTPELMSAAEIADELGVSRQRVHQLRST 120
Query 121 AGFPAPLADLRGGAVWDAAAVRRFAETWERKPGRPHTGTAKFAYSWAVGPAVGRSGKAPN 180
AGFPAPLADLR GAVWDAAAVRRFAETWERKPGRPHTGTAKFAYSWAVGPAVGRSGKAPN
Sbjct 121 AGFPAPLADLRAGAVWDAAAVRRFAETWERKPGRPHTGTAKFAYSWAVGPAVGRSGKAPN 180
Query 181 VRWRVENPDKIRFVLRNIGDDIAEDVEIDLSRIDAITRNVPKKTVIRPGEGLNMVLIAAW 240
VRWRVENPDKIRFVLRNIGDDIAEDVEIDLSRIDAITRNVPKKTVIRPGEGLNMVLIAAW
Sbjct 181 VRWRVENPDKIRFVLRNIGDDIAEDVEIDLSRIDAITRNVPKKTVIRPGEGLNMVLIAAW 240
Query 241 GHPLPNQLYVRWAGQDEWAAVPLHPAH 267
GHPLPNQLYVRWAGQDEWAAVPLHPAH
Sbjct 241 GHPLPNQLYVRWAGQDEWAAVPLHPAH 267
>gi|289570678|ref|ZP_06450905.1| hypothetical protein TBJG_04194 [Mycobacterium tuberculosis T17]
gi|289544432|gb|EFD48080.1| hypothetical protein TBJG_04194 [Mycobacterium tuberculosis T17]
Length=259
Score = 486 bits (1252), Expect = 1e-135, Method: Compositional matrix adjust.
Identities = 246/258 (96%), Positives = 251/258 (98%), Gaps = 4/258 (1%)
Query 1 VTADWVVTFTFDADPSMETMDAWETQLEGFDALVSRVPGHGIDVTVYAPGDWSVFDALAK 60
+TADWVVTFTFDADPSMETMDAWETQLEGFDALVSRVPGHGIDVTVYAPGDWSVFDALAK
Sbjct 1 MTADWVVTFTFDADPSMETMDAWETQLEGFDALVSRVPGHGIDVTVYAPGDWSVFDALAK 60
Query 61 MAGEVMPVVQAKSPIAVQIISEPEHRLRAEAFTTPELMSAAEIADELGVSRQRVHQLRST 120
MAGEVMPVVQAKSPIAVQIISEPEHRLRAEAFTTPELMSAAEIADELGVSRQRVHQLRST
Sbjct 61 MAGEVMPVVQAKSPIAVQIISEPEHRLRAEAFTTPELMSAAEIADELGVSRQRVHQLRST 120
Query 121 AGFPAPLADLRGGAVWDAAAVRRFAETWERKPGRPHTGTAKFAYSWAVGPAVGRSGKAPN 180
AGFPAPLADLRGGAVWDAAAVRRFAETWERKPGRPHTGTAKFAYSWAVGPAVGRSGKAPN
Sbjct 121 AGFPAPLADLRGGAVWDAAAVRRFAETWERKPGRPHTGTAKFAYSWAVGPAVGRSGKAPN 180
Query 181 VRWRVENPDKIRFVLRNIGDDIAEDVEIDLSRIDAITRNVPKKTVIRPGEGLNMVLIAAW 240
VRWRVENPDKIRFVLRNIGDDIAEDVEIDLSRIDAITRNVPKKTVIRPGEGLNMVLIAAW
Sbjct 181 VRWRVENPDKIRFVLRNIGDDIAEDVEIDLSRIDAITRNVPKKTVIRPGEGLNMVLIAAW 240
Query 241 GHPLPNQLYVR---WAGQ 255
GHP P++ +R W G+
Sbjct 241 GHP-PSKSAIRPLGWTGR 257
>gi|289762684|ref|ZP_06522062.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
gi|289710190|gb|EFD74206.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
Length=199
Score = 397 bits (1020), Expect = 8e-109, Method: Compositional matrix adjust.
Identities = 197/198 (99%), Positives = 197/198 (99%), Gaps = 0/198 (0%)
Query 70 QAKSPIAVQIISEPEHRLRAEAFTTPELMSAAEIADELGVSRQRVHQLRSTAGFPAPLAD 129
AKSPIAVQIISEPEHRLRAEAFTTPELMSAAEIADELGVSRQRVHQLRSTAGFPAPLAD
Sbjct 2 SAKSPIAVQIISEPEHRLRAEAFTTPELMSAAEIADELGVSRQRVHQLRSTAGFPAPLAD 61
Query 130 LRGGAVWDAAAVRRFAETWERKPGRPHTGTAKFAYSWAVGPAVGRSGKAPNVRWRVENPD 189
LRGGAVWDAAAVRRFAETWERKPGRPHTGTAKFAYSWAVGPAVGRSGKAPNVRWRVENPD
Sbjct 62 LRGGAVWDAAAVRRFAETWERKPGRPHTGTAKFAYSWAVGPAVGRSGKAPNVRWRVENPD 121
Query 190 KIRFVLRNIGDDIAEDVEIDLSRIDAITRNVPKKTVIRPGEGLNMVLIAAWGHPLPNQLY 249
KIRFVLRNIGDDIAEDVEIDLSRIDAITRNVPKKTVIRPGEGLNMVLIAAWGHPLPNQLY
Sbjct 122 KIRFVLRNIGDDIAEDVEIDLSRIDAITRNVPKKTVIRPGEGLNMVLIAAWGHPLPNQLY 181
Query 250 VRWAGQDEWAAVPLHPAH 267
VRWAGQDEWAAVPLHPAH
Sbjct 182 VRWAGQDEWAAVPLHPAH 199
>gi|289444047|ref|ZP_06433791.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289416966|gb|EFD14206.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
Length=224
Score = 385 bits (990), Expect = 3e-105, Method: Compositional matrix adjust.
Identities = 189/190 (99%), Positives = 190/190 (100%), Gaps = 0/190 (0%)
Query 1 VTADWVVTFTFDADPSMETMDAWETQLEGFDALVSRVPGHGIDVTVYAPGDWSVFDALAK 60
+TADWVVTFTFDADPSMETMDAWETQLEGFDALVSRVPGHGIDVTVYAPGDWSVFDALAK
Sbjct 1 MTADWVVTFTFDADPSMETMDAWETQLEGFDALVSRVPGHGIDVTVYAPGDWSVFDALAK 60
Query 61 MAGEVMPVVQAKSPIAVQIISEPEHRLRAEAFTTPELMSAAEIADELGVSRQRVHQLRST 120
MAGEVMPVVQAKSPIAVQIISEPEHRLRAEAFTTPELMSAAEIADELGVSRQRVHQLRST
Sbjct 61 MAGEVMPVVQAKSPIAVQIISEPEHRLRAEAFTTPELMSAAEIADELGVSRQRVHQLRST 120
Query 121 AGFPAPLADLRGGAVWDAAAVRRFAETWERKPGRPHTGTAKFAYSWAVGPAVGRSGKAPN 180
AGFPAPLADLRGGAVWDAAAVRRFAETWERKPGRPHTGTAKFAYSWAVGPAVGRSGKAPN
Sbjct 121 AGFPAPLADLRGGAVWDAAAVRRFAETWERKPGRPHTGTAKFAYSWAVGPAVGRSGKAPN 180
Query 181 VRWRVENPDK 190
VRWRVENPDK
Sbjct 181 VRWRVENPDK 190
>gi|289746298|ref|ZP_06505676.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289686826|gb|EFD54314.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=210
Score = 368 bits (944), Expect = 7e-100, Method: Compositional matrix adjust.
Identities = 183/184 (99%), Positives = 183/184 (99%), Gaps = 0/184 (0%)
Query 17 METMDAWETQLEGFDALVSRVPGHGIDVTVYAPGDWSVFDALAKMAGEVMPVVQAKSPIA 76
METMDAWETQLEGFDALVSRVPGHGIDVTVYAPGDWSVFDALAKM GEVMPVVQAKSPIA
Sbjct 1 METMDAWETQLEGFDALVSRVPGHGIDVTVYAPGDWSVFDALAKMVGEVMPVVQAKSPIA 60
Query 77 VQIISEPEHRLRAEAFTTPELMSAAEIADELGVSRQRVHQLRSTAGFPAPLADLRGGAVW 136
VQIISEPEHRLRAEAFTTPELMSAAEIADELGVSRQRVHQLRSTAGFPAPLADLRGGAVW
Sbjct 61 VQIISEPEHRLRAEAFTTPELMSAAEIADELGVSRQRVHQLRSTAGFPAPLADLRGGAVW 120
Query 137 DAAAVRRFAETWERKPGRPHTGTAKFAYSWAVGPAVGRSGKAPNVRWRVENPDKIRFVLR 196
DAAAVRRFAETWERKPGRPHTGTAKFAYSWAVGPAVGRSGKAPNVRWRVENPDKIRFVLR
Sbjct 121 DAAAVRRFAETWERKPGRPHTGTAKFAYSWAVGPAVGRSGKAPNVRWRVENPDKIRFVLR 180
Query 197 NIGD 200
NIGD
Sbjct 181 NIGD 184
>gi|41408857|ref|NP_961693.1| hypothetical protein MAP2759 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41397216|gb|AAS05076.1| hypothetical protein MAP_2759 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336458866|gb|EGO37823.1| hypothetical protein MAPs_09250 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=172
Score = 222 bits (565), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 105/155 (68%), Positives = 128/155 (83%), Gaps = 0/155 (0%)
Query 4 DWVVTFTFDADPSMETMDAWETQLEGFDALVSRVPGHGIDVTVYAPGDWSVFDALAKMAG 63
DWV+TFTFD DP +ETMD WE++L+GFDA V+R+P G+D+TVYAPGD S+FDAL K
Sbjct 5 DWVITFTFDVDPPIETMDEWESRLDGFDASVARIPDRGVDLTVYAPGDLSMFDALNKTIN 64
Query 64 EVMPVVQAKSPIAVQIISEPEHRLRAEAFTTPELMSAAEIADELGVSRQRVHQLRSTAGF 123
EV VVQ+ PI +++++E EH RAEA + PELMSAAEIADELGV RQRVHQLR+T+ F
Sbjct 65 EVAHVVQSGPPIGLEVVTEREHTRRAEAPSMPELMSAAEIADELGVRRQRVHQLRATSAF 124
Query 124 PAPLADLRGGAVWDAAAVRRFAETWERKPGRPHTG 158
PAPLA+LRGGAVWDAAAVR+FA+ W+RKPGRP
Sbjct 125 PAPLAELRGGAVWDAAAVRKFAQDWQRKPGRPRNS 159
>gi|296166006|ref|ZP_06848458.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295898627|gb|EFG78181.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=214
Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 99/152 (66%), Positives = 124/152 (82%), Gaps = 1/152 (0%)
Query 4 DWVVTFTFDADPSMETMDAWETQLEGFDALVSRVPGHGIDVTVYAPGDWSVFDALAKMAG 63
DWV++FTF+ DPSMETMD WETQLEG D V+R+PGHG+DVT YA G SV +A KMA
Sbjct 4 DWVISFTFNVDPSMETMDRWETQLEGLDGSVARIPGHGVDVTTYASGGMSVIEAAEKMAN 63
Query 64 EVMPVVQAKSPIAVQIISEPEHRLRAEAFTTPELMSAAEIADELGVSRQRVHQLRSTAGF 123
EV+ +V A+ P+ ++++ E + + RA+ T PELMSAAEIA+ELG+SRQRVHQLR TA F
Sbjct 64 EVIHIVHAE-PVGMEVMREAQWQRRADEPTLPELMSAAEIAEELGISRQRVHQLRRTAMF 122
Query 124 PAPLADLRGGAVWDAAAVRRFAETWERKPGRP 155
PAPLADLRGGAVWDAAA+R+F+ W+R+PGRP
Sbjct 123 PAPLADLRGGAVWDAAAIRKFSSDWKRQPGRP 154
>gi|254776183|ref|ZP_05217699.1| hypothetical protein MaviaA2_16135 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=132
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/87 (50%), Positives = 57/87 (66%), Gaps = 0/87 (0%)
Query 177 KAPNVRWRVENPDKIRFVLRNIGDDIAEDVEIDLSRIDAITRNVPKKTVIRPGEGLNMVL 236
K V WR+E D ++VLRN G D AE V +D SR I R +P +V++PG G M+L
Sbjct 45 KPAEVAWRIEKGDGDQYVLRNTGTDTAEHVYVDESRAPRINRRLPNDSVVQPGAGHTMLL 104
Query 237 IAAWGHPLPNQLYVRWAGQDEWAAVPL 263
+ P+PN+LYV+WAGQD+W AVPL
Sbjct 105 KGSMQSPMPNELYVKWAGQDDWVAVPL 131
>gi|328906564|gb|EGG26339.1| hypothetical protein PA08_2307 [Propionibacterium humerusii P08]
Length=94
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/66 (46%), Positives = 41/66 (63%), Gaps = 0/66 (0%)
Query 95 PELMSAAEIADELGVSRQRVHQLRSTAGFPAPLADLRGGAVWDAAAVRRFAETWERKPGR 154
P ++ AEIA+ GVSRQR+ QL TAGFP P+ + G ++ AA ++A T + K GR
Sbjct 28 PPVVGYAEIAEAAGVSRQRIRQLAGTAGFPVPVIETTQGPLFPKAAAEQWARTRQPKAGR 87
Query 155 PHTGTA 160
P TA
Sbjct 88 PQRTTA 93
>gi|313836539|gb|EFS74253.1| conserved domain protein [Propionibacterium acnes HL037PA2]
gi|314928993|gb|EFS92824.1| conserved domain protein [Propionibacterium acnes HL044PA1]
gi|314971114|gb|EFT15212.1| conserved domain protein [Propionibacterium acnes HL037PA3]
Length=141
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/66 (46%), Positives = 41/66 (63%), Gaps = 0/66 (0%)
Query 95 PELMSAAEIADELGVSRQRVHQLRSTAGFPAPLADLRGGAVWDAAAVRRFAETWERKPGR 154
P ++ AEIA+ GVSRQR+ QL TAGFP P+ + G ++ AA ++A T + K GR
Sbjct 75 PPVVGYAEIAEAAGVSRQRIRQLAGTAGFPVPVIETTQGPLFPKAAAEQWARTRQPKAGR 134
Query 155 PHTGTA 160
P TA
Sbjct 135 PQRTTA 140
>gi|340774847|gb|EGR97322.1| conserved domain protein [Propionibacterium acnes SK182B-JCVI]
Length=158
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/65 (45%), Positives = 40/65 (62%), Gaps = 0/65 (0%)
Query 95 PELMSAAEIADELGVSRQRVHQLRSTAGFPAPLADLRGGAVWDAAAVRRFAETWERKPGR 154
P ++ AEIA GVSRQR+ QL +TAGFPAP+ G ++ AA ++A T + K GR
Sbjct 92 PPVVGYAEIAKAAGVSRQRIRQLAATAGFPAPVIKTAAGPLFPKAAAEQWARTRQPKAGR 151
Query 155 PHTGT 159
P +
Sbjct 152 PKQAS 156
>gi|315097633|gb|EFT69609.1| conserved domain protein [Propionibacterium acnes HL038PA1]
gi|327330143|gb|EGE71894.1| hypothetical protein HMPREF9338_01176 [Propionibacterium acnes
HL096PA2]
Length=159
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/65 (44%), Positives = 39/65 (60%), Gaps = 0/65 (0%)
Query 95 PELMSAAEIADELGVSRQRVHQLRSTAGFPAPLADLRGGAVWDAAAVRRFAETWERKPGR 154
P ++ EIA+ G+SRQR+ QL TAGFPAP+ G ++ AA ++A T + K GR
Sbjct 92 PPVVGYTEIAETAGLSRQRIRQLAGTAGFPAPVIKTAAGPLFPKAAAEQWARTRQPKAGR 151
Query 155 PHTGT 159
P T
Sbjct 152 PKLQT 156
>gi|269955334|ref|YP_003325123.1| phage transcriptional regulator AlpA [Xylanimonas cellulosilytica
DSM 15894]
gi|269304015|gb|ACZ29565.1| phage transcriptional regulator, AlpA [Xylanimonas cellulosilytica
DSM 15894]
Length=63
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/55 (57%), Positives = 35/55 (64%), Gaps = 0/55 (0%)
Query 97 LMSAAEIADELGVSRQRVHQLRSTAGFPAPLADLRGGAVWDAAAVRRFAETWERK 151
LM AE+A LGVSRQRVHQL S FPAP+A L G VW A V +AE R+
Sbjct 5 LMGNAEVAALLGVSRQRVHQLTSRPDFPAPIAVLAMGKVWRTADVLAWAEATGRE 59
>gi|314954538|gb|EFS98944.1| conserved domain protein [Propionibacterium acnes HL027PA1]
Length=187
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/67 (42%), Positives = 40/67 (60%), Gaps = 0/67 (0%)
Query 95 PELMSAAEIADELGVSRQRVHQLRSTAGFPAPLADLRGGAVWDAAAVRRFAETWERKPGR 154
P ++ EIA G+SRQR+ QL +TAGFPAP+ G ++ AA ++A T + K GR
Sbjct 121 PPVVGYTEIAHLAGLSRQRIRQLAATAGFPAPVIKTAAGPLFPKAAAEQWARTRQPKAGR 180
Query 155 PHTGTAK 161
P +A
Sbjct 181 PKQASAS 187
>gi|314927711|gb|EFS91542.1| conserved domain protein [Propionibacterium acnes HL044PA1]
Length=168
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/67 (42%), Positives = 40/67 (60%), Gaps = 0/67 (0%)
Query 95 PELMSAAEIADELGVSRQRVHQLRSTAGFPAPLADLRGGAVWDAAAVRRFAETWERKPGR 154
P ++ EIA G+SRQR+ QL +TAGFPAP+ G ++ AA ++A T + K GR
Sbjct 102 PPVVGYTEIAHLAGLSRQRIRQLAATAGFPAPVIKTAAGPLFPKAAAEQWARTRQPKAGR 161
Query 155 PHTGTAK 161
P +A
Sbjct 162 PKQASAS 168
>gi|227546139|ref|ZP_03976188.1| hypothetical protein HMPREF0175_0562 [Bifidobacterium longum
subsp. infantis ATCC 55813]
gi|239621819|ref|ZP_04664850.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG
52486]
gi|227213415|gb|EEI81283.1| hypothetical protein HMPREF0175_0562 [Bifidobacterium longum
subsp. infantis ATCC 55813]
gi|239515010|gb|EEQ54877.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG
52486]
Length=161
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/160 (29%), Positives = 74/160 (47%), Gaps = 14/160 (8%)
Query 4 DWVVTFTF----DADPSMETMDAWETQLEGFDALVSRVPGH---GIDVTVYAPGDWSVFD 56
+W V+ F D D + + M+A L + A V+ PGH G+ + V AP + D
Sbjct 6 EWQVSLDFKARLDEDAAFDLMEA----LGRYGASVAVDPGHTGGGLTLAVDAPDGETALD 61
Query 57 ALAKMAGEVMPVVQAKSPIAVQIISEPEHRLRAEAFTTPELMSAAEIADELGVSRQRVHQ 116
+ + MP + + ++ R R + P ++ AEIA GV+RQR +
Sbjct 62 KALTLLEKNMPGATVTG-LEAREWADAVARNREPLY--PPVVGYAEIARMTGVTRQRAYA 118
Query 117 LRSTAGFPAPLADLRGGAVWDAAAVRRFAETWERKPGRPH 156
FP P+ + G ++ AVR +A+T E +PGRP
Sbjct 119 FPRIESFPKPVIETSQGPLYSEDAVRAWAQTRELRPGRPK 158
>gi|314976779|gb|EFT20874.1| conserved domain protein [Propionibacterium acnes HL045PA1]
Length=159
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/65 (42%), Positives = 39/65 (60%), Gaps = 0/65 (0%)
Query 95 PELMSAAEIADELGVSRQRVHQLRSTAGFPAPLADLRGGAVWDAAAVRRFAETWERKPGR 154
P ++ EIA+ G+SRQR+ QL TAGFPAP+ + G ++ AA ++ T + K GR
Sbjct 92 PPVVGYTEIAETAGLSRQRIRQLAGTAGFPAPVIETAQGPLFPKAAAEQWTRTRQPKAGR 151
Query 155 PHTGT 159
P T
Sbjct 152 PKLQT 156
>gi|261337888|ref|ZP_05965772.1| conserved hypothetical protein [Bifidobacterium gallicum DSM
20093]
gi|270277362|gb|EFA23216.1| conserved hypothetical protein [Bifidobacterium gallicum DSM
20093]
Length=203
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/90 (37%), Positives = 47/90 (53%), Gaps = 4/90 (4%)
Query 93 TTPELMSAAEIADELGVSRQRVHQLRSTAGFPAPLADLRGGAVWDAAAVRRFAETWERKP 152
T P ++S AEIA VSRQRV QL + FP P+ + ++ AV R+ ET + KP
Sbjct 98 TYPPVVSNAEIARMAHVSRQRVGQLTRSHTFPKPVIETEHTKLYRKDAVERWLETRQTKP 157
Query 153 GRPHTGTAKFAYSWAVGPAVGRSGKAPNVR 182
GRP + + A + PA+ P +R
Sbjct 158 GRPLASSVEEAKA----PALSDYATEPVIR 183
>gi|256394629|ref|YP_003116193.1| hypothetical protein Caci_5493 [Catenulispora acidiphila DSM
44928]
gi|256360855|gb|ACU74352.1| hypothetical protein Caci_5493 [Catenulispora acidiphila DSM
44928]
Length=162
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/59 (50%), Positives = 32/59 (55%), Gaps = 4/59 (6%)
Query 97 LMSAAEIADELGVSRQRVHQLRSTAGFPAPLADLRGGAVWDAAAVRRFAETWERKPGRP 155
LM AAEI VSRQRV QL + A FP P ADL G VW R + W + GRP
Sbjct 11 LMGAAEIGKLFDVSRQRVQQLIAKADFPVPEADLAMGKVWST----RNVKDWGLQAGRP 65
>gi|238062879|ref|ZP_04607588.1| hypothetical protein MCAG_03845 [Micromonospora sp. ATCC 39149]
gi|237884690|gb|EEP73518.1| hypothetical protein MCAG_03845 [Micromonospora sp. ATCC 39149]
Length=143
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/78 (31%), Positives = 39/78 (50%), Gaps = 0/78 (0%)
Query 189 DKIRFVLRNIGDDIAEDVEIDLSRIDAITRNVPKKTVIRPGEGLNMVLIAAWGHPLPNQL 248
D+ + + N G ++A +VEID R + R + PG + + + G P ++
Sbjct 64 DRESWAMVNTGTEVAREVEIDKPRAPGVIRAEKDPGPVWPGASIPLRNATSLGQPTLREI 123
Query 249 YVRWAGQDEWAAVPLHPA 266
+VRW GQ EW VP+ P
Sbjct 124 WVRWEGQTEWVPVPMPPG 141
>gi|271963380|ref|YP_003337576.1| hypothetical protein Sros_1845 [Streptosporangium roseum DSM
43021]
gi|270506555|gb|ACZ84833.1| hypothetical protein Sros_1845 [Streptosporangium roseum DSM
43021]
Length=173
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (32%), Positives = 40/85 (48%), Gaps = 2/85 (2%)
Query 179 PNVRWRVENPDKIRFVLRNIGDDIAEDVEIDLSRIDAITRNVPKKTVIRPGEGLNMVLIA 238
P V W + +VLRN G +IA V +D S N P+ VI PG + V+
Sbjct 84 PTVNWDLSKSVGHGYVLRNTGTEIATGVTVDNS--SRTMTNAPENAVIPPGASVKFVMEG 141
Query 239 AWGHPLPNQLYVRWAGQDEWAAVPL 263
+ P+++ V W G E A +P+
Sbjct 142 SLARSTPHEILVSWDGAAEPAVIPV 166
>gi|302864860|ref|YP_003833497.1| hypothetical protein Micau_0354 [Micromonospora aurantiaca ATCC
27029]
gi|302567719|gb|ADL43921.1| hypothetical protein Micau_0354 [Micromonospora aurantiaca ATCC
27029]
Length=80
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/66 (47%), Positives = 35/66 (54%), Gaps = 6/66 (9%)
Query 95 PELMSAAEIADELGVSRQRVHQLRSTAGFPAPLADLRGGAVWDAAAVRRFAETWER--KP 152
P L E+A GVSRQRV Q+ GFP PLA L G VWDA V + W R +P
Sbjct 15 PRLYGPGELAALFGVSRQRVLQITRRPGFPEPLARLIGMNVWDADEV----DEWARHNRP 70
Query 153 GRPHTG 158
RP G
Sbjct 71 PRPTEG 76
>gi|158311925|ref|YP_001504433.1| serine/threonine protein kinase [Frankia sp. EAN1pec]
gi|158107330|gb|ABW09527.1| serine/threonine protein kinase [Frankia sp. EAN1pec]
Length=514
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/59 (45%), Positives = 36/59 (62%), Gaps = 1/59 (1%)
Query 102 EIADELGVSRQRVHQLRSTAGFPAPLADLRGGAVWDAAAVRRFAETWER-KPGRPHTGT 159
E+A+ LGVSRQRV +LR A FP P+A++ G +WD + + + R PGRP T
Sbjct 6 EVAEILGVSRQRVAKLRDRADFPDPIAEIAQGPIWDLDKIEEWGGSDLRLSPGRPRADT 64
>gi|288916872|ref|ZP_06411245.1| hypothetical protein FrEUN1fDRAFT_0938 [Frankia sp. EUN1f]
gi|288351757|gb|EFC85961.1| hypothetical protein FrEUN1fDRAFT_0938 [Frankia sp. EUN1f]
Length=58
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/58 (47%), Positives = 35/58 (61%), Gaps = 2/58 (3%)
Query 98 MSAAEIADELGVSRQRVHQLRST-AGFPAPLADLRGGAVWDAAAVRRFAETWERKPGR 154
M AEIA+ LGVSR RVHQ+ +T FP PL +++ G VW A + R+ R P R
Sbjct 1 MGTAEIAERLGVSRVRVHQIATTDPSFPEPLDEIKAGKVWLAEDIERWISK-HRPPAR 57
>gi|312193921|ref|YP_004013982.1| hypothetical protein FraEuI1c_0024 [Frankia sp. EuI1c]
gi|311225257|gb|ADP78112.1| hypothetical protein FraEuI1c_0024 [Frankia sp. EuI1c]
Length=119
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/69 (48%), Positives = 38/69 (56%), Gaps = 3/69 (4%)
Query 94 TPELMSAAEIADELGVSRQRVHQ-LRSTAGFPAPLADLRGGAVWDAAAVRRFAETWERKP 152
T +LM AAEIA L VS RVHQ LR + FP P+A L G VW A V R+ RK
Sbjct 3 TIKLMGAAEIAQLLDVSPSRVHQILRDDSAFPEPVAVLSMGKVWSAEDVERWNAA--RKA 60
Query 153 GRPHTGTAK 161
RP A+
Sbjct 61 PRPARDQAE 69
>gi|158318004|ref|YP_001510512.1| phage transcriptional regulator AlpA [Frankia sp. EAN1pec]
gi|158113409|gb|ABW15606.1| phage transcriptional regulator, AlpA [Frankia sp. EAN1pec]
Length=119
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/60 (42%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query 96 ELMSAAEIADELGVSRQRVHQ-LRSTAGFPAPLADLRGGAVWDAAAVRRFAETWERKPGR 154
LM+AAEIA LG+ R++Q +++ FP P+A LR G +W A + E W R+ GR
Sbjct 53 RLMAAAEIAQALGLGSARIYQIMKADPTFPEPIATLRVGKIWLATDI----EEWMRRTGR 108
>gi|108802426|ref|YP_642622.1| hypothetical protein Mmcs_5466 [Mycobacterium sp. MCS]
gi|119855251|ref|YP_935854.1| hypothetical protein Mkms_5865 [Mycobacterium sp. KMS]
gi|108772845|gb|ABG11566.1| hypothetical protein Mmcs_5466 [Mycobacterium sp. MCS]
gi|119697968|gb|ABL95039.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=203
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/56 (45%), Positives = 32/56 (58%), Gaps = 0/56 (0%)
Query 94 TPELMSAAEIADELGVSRQRVHQLRSTAGFPAPLADLRGGAVWDAAAVRRFAETWE 149
T +L+S EIA ELGVSRQR +L FP +A G V+ A+V+ F WE
Sbjct 122 TLDLISITEIAAELGVSRQRAAKLTEAPDFPHHVAQPASGRVYTRASVKEFQRRWE 177
>gi|111224819|ref|YP_715613.1| hypothetical protein FRAAL5453 [Frankia alni ACN14a]
gi|111152351|emb|CAJ64086.1| conserved hypothetical protein [Frankia alni ACN14a]
Length=67
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/68 (46%), Positives = 36/68 (53%), Gaps = 7/68 (10%)
Query 94 TPELMSAAEIADELGVSRQRVHQ-LRSTAGFPAPLADLRGGAVWDAAAVRRFAETW--ER 150
T LM AAEIA LGV R RV+Q L+ FPAP A L G +W V E W E
Sbjct 2 TQPLMGAAEIARRLGVGRTRVNQLLKEDPTFPAPYASLAAGHIWRTDDV----EAWIAEH 57
Query 151 KPGRPHTG 158
+P P +G
Sbjct 58 RPDPPPSG 65
>gi|190410669|ref|YP_001965239.1| hypothetical protein pFRL1.33c [Streptomyces sp. FR1]
gi|84872684|gb|ABC67421.1| hypothetical protein pFRL1.33c [Streptomyces sp. FR1]
Length=81
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/56 (45%), Positives = 33/56 (59%), Gaps = 2/56 (3%)
Query 102 EIADELGVSRQRVHQLRSTAGFPAPLADLRGGAVWDAAAVRRFAETWERKP--GRP 155
EI + LGVSRQR + L + FP LA + G VW+ AAV + + W+R GRP
Sbjct 19 EIGEMLGVSRQRANALVARPDFPPFLARTKAGRVWERAAVEEWEKGWDRTNVGGRP 74
>gi|315506716|ref|YP_004085603.1| hypothetical protein ML5_6007 [Micromonospora sp. L5]
gi|315413335|gb|ADU11452.1| hypothetical protein ML5_6007 [Micromonospora sp. L5]
Length=66
Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 28/62 (46%), Positives = 32/62 (52%), Gaps = 5/62 (8%)
Query 97 LMSAAEIADELGVSRQRVHQLRSTAGFPAPLADLRGGAVWDAAAVRRFAETWERKPGRPH 156
L A EIA LGVSRQR Q+ FP P L GAVW ++R E W + RPH
Sbjct 5 LYGAGEIAGRLGVSRQRARQIIDRPDFPEPYDRLGMGAVW----LKRDVEAWIAE-HRPH 59
Query 157 TG 158
G
Sbjct 60 LG 61
>gi|290957418|ref|YP_003488600.1| hypothetical protein SCAB_29401 [Streptomyces scabiei 87.22]
gi|260646944|emb|CBG70043.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length=186
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (48%), Gaps = 3/80 (3%)
Query 179 PNVRWRVENPDKIRFVLRNIGDDIAEDVEI-DLSRIDAITRNVPKKTVIRPGEGLNMVLI 237
P +R+E + F LRN G A + + D R + R V ++PG+ +++
Sbjct 100 PRPEFRIERSGRQGFRLRNAGTGPATGITVSDRGRSYTMDRIV--DLTLQPGDAKAFMML 157
Query 238 AAWGHPLPNQLYVRWAGQDE 257
G P+P LY+ W GQ E
Sbjct 158 GTAGQPIPGTLYLTWDGQSE 177
>gi|256825203|ref|YP_003149163.1| hypothetical protein Ksed_13700 [Kytococcus sedentarius DSM 20547]
gi|256688596|gb|ACV06398.1| hypothetical protein Ksed_13700 [Kytococcus sedentarius DSM 20547]
Length=89
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/88 (23%), Positives = 42/88 (48%), Gaps = 0/88 (0%)
Query 180 NVRWRVENPDKIRFVLRNIGDDIAEDVEIDLSRIDAITRNVPKKTVIRPGEGLNMVLIAA 239
NV + + + +++RN+ D + V + + + +TR++P + PG +++A
Sbjct 2 NVPFEITSGPGQSYLMRNVSDQTVDLVTVTVDHPEGLTRDLPSEDTFGPGASKKFLVLAT 61
Query 240 WGHPLPNQLYVRWAGQDEWAAVPLHPAH 267
W P ++ V W A+PL P +
Sbjct 62 WQTGRPVEVLVSWDVHPTPYALPLPPKN 89
>gi|318057438|ref|ZP_07976161.1| hypothetical protein SSA3_05828 [Streptomyces sp. SA3_actG]
gi|318075999|ref|ZP_07983331.1| hypothetical protein SSA3_04614 [Streptomyces sp. SA3_actF]
Length=159
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/67 (41%), Positives = 36/67 (54%), Gaps = 1/67 (1%)
Query 90 EAFTTPELMSAAEIADELGVSRQRVHQLRSTAGFPAPLADLRGGAVWDAAAVRRFAETWE 149
+A +P LM+ EIA E GVSRQ VH R T FPAP+ + GG+ + A +E
Sbjct 6 DAEGSPRLMTITEIAAEHGVSRQTVHTYRRTGIFPAPV-EGEGGSTRPRFRQDQVAAFFE 64
Query 150 RKPGRPH 156
P +P
Sbjct 65 ANPKQPR 71
>gi|158317272|ref|YP_001509780.1| hypothetical protein Franean1_5520 [Frankia sp. EAN1pec]
gi|158112677|gb|ABW14874.1| conserved hypothetical protein [Frankia sp. EAN1pec]
Length=67
Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/41 (54%), Positives = 25/41 (61%), Gaps = 1/41 (2%)
Query 97 LMSAAEIADELGVSRQRVHQ-LRSTAGFPAPLADLRGGAVW 136
LM AAEIA LGV R RV+Q L+ FP P A L G +W
Sbjct 5 LMGAAEIAQRLGVGRTRVNQLLKEDPTFPKPHATLAAGHIW 45
>gi|330465356|ref|YP_004403099.1| hypothetical protein VAB18032_06875 [Verrucosispora maris AB-18-032]
gi|328808327|gb|AEB42499.1| hypothetical protein VAB18032_06875 [Verrucosispora maris AB-18-032]
Length=63
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/48 (44%), Positives = 28/48 (59%), Gaps = 1/48 (2%)
Query 96 ELMSAAEIADELG-VSRQRVHQLRSTAGFPAPLADLRGGAVWDAAAVR 142
+L+ EI D LG +S+QR + GFP P+ L+ G VWD AVR
Sbjct 2 DLLGLDEIRDLLGGISKQRATIIVGRKGFPDPVVTLKMGRVWDGKAVR 49
>gi|157961284|ref|YP_001501318.1| AraC family transcriptional regulator [Shewanella pealeana ATCC
700345]
gi|157846284|gb|ABV86783.1| transcriptional regulator, AraC family [Shewanella pealeana ATCC
700345]
Length=504
Score = 40.0 bits (92), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/109 (29%), Positives = 58/109 (54%), Gaps = 7/109 (6%)
Query 20 MDAWETQLEGFDALVSRVPGHGIDVTVYAPGDWSVFDALAK-MAGEVMPVVQAKSPIAVQ 78
+DA +Q++ ++ + G + + PG WSVF+A + + G+ + +VQA +
Sbjct 309 LDANISQIDNVLETITPLAGQ-MTQGLRLPGVWSVFEAGCRAVLGQQVSIVQASKLLNQL 367
Query 79 IISEPEHRL----RAEAFTTPELMSAAEIADELGVSRQRVHQLRSTAGF 123
+++ E RL R + F TPE+++ AE+ EL + R + L + A F
Sbjct 368 VLAYGEERLIGDKRVKLFPTPEVIAKAELT-ELKIPGARRNALNALAQF 415
>gi|296164049|ref|ZP_06846672.1| serine/threonine protein kinase [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295900597|gb|EFG79980.1| serine/threonine protein kinase [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=518
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/63 (37%), Positives = 34/63 (54%), Gaps = 2/63 (3%)
Query 97 LMSAAEIADELGVSRQRVHQLRSTAGFPAPLADLRGGAVWDAAAVRRFAETWER--KPGR 154
L +E+A+ELGVS QR+ LR FP + ++ G +WD V + + R K GR
Sbjct 3 LGGISEVAEELGVSTQRIATLRQRNDFPDAVGEIAQGPIWDLDVVAGWNSSGLRQTKAGR 62
Query 155 PHT 157
P +
Sbjct 63 PKS 65
>gi|77919976|ref|YP_357791.1| RNA polymerase, sigma (32) factor [Pelobacter carbinolicus DSM
2380]
gi|77546059|gb|ABA89621.1| RNA polymerase, sigma 32 subunit, RpoH [Pelobacter carbinolicus
DSM 2380]
Length=286
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/90 (27%), Positives = 46/90 (52%), Gaps = 9/90 (10%)
Query 41 GIDVTVYAPGDWSVFDALA--KMAGEVMPVVQAKSPI-------AVQIISEPEHRLRAEA 91
+D+ + D+++ D+LA + + E + + Q + I A+Q +++ E R+ E
Sbjct 179 SLDMRLVEGEDFTLLDSLADERESQEELLIKQQEKQITTSHIHGALQELNDRERRIVEER 238
Query 92 FTTPELMSAAEIADELGVSRQRVHQLRSTA 121
E + +AD+ G+SR+RV QL A
Sbjct 239 ILQEEPRTLQALADDFGISRERVRQLEKNA 268
>gi|312194171|ref|YP_004014232.1| sigma-70 region 4 domain protein [Frankia sp. EuI1c]
gi|311225507|gb|ADP78362.1| sigma-70 region 4 domain protein [Frankia sp. EuI1c]
Length=69
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/67 (33%), Positives = 34/67 (51%), Gaps = 2/67 (2%)
Query 95 PELMSAAEIADELGVSRQRVHQLRSTAGFPAPLADLRGGAVWDAAAVRRFAETWERKPGR 154
P+L + +I LG+SR+R QL FPAP+ + +W A V +A E +P +
Sbjct 5 PQLWTTKDIGAHLGISRERARQLSHGDDFPAPVGQVGHIRMWSAPDVEAWAT--EHRPDK 62
Query 155 PHTGTAK 161
G A+
Sbjct 63 ADAGDAQ 69
>gi|288916020|ref|ZP_06410402.1| hypothetical protein FrEUN1fDRAFT_0095 [Frankia sp. EUN1f]
gi|288352649|gb|EFC86844.1| hypothetical protein FrEUN1fDRAFT_0095 [Frankia sp. EUN1f]
Length=79
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/69 (35%), Positives = 35/69 (51%), Gaps = 3/69 (4%)
Query 91 AFTTPELMSAAEIADELGVSRQRVHQLRSTAGFPAPLADLRGGAVWDAAAVRRFAETWER 150
A T L + +IA ELGV+ +R QL FP P+ +R +W A+ V+ + R
Sbjct 14 AVTDESLWTTGDIAKELGVTTERARQLSHRPDFPVPVQTVRHFRLWRASDVQEWIA--RR 71
Query 151 KPGRPHTGT 159
+P P GT
Sbjct 72 RPA-PDDGT 79
>gi|328761257|gb|EGF74788.1| hypothetical protein HMPREF9343_01041 [Propionibacterium acnes
HL099PA1]
Length=121
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/30 (54%), Positives = 21/30 (70%), Gaps = 0/30 (0%)
Query 95 PELMSAAEIADELGVSRQRVHQLRSTAGFP 124
P ++ EIA+ G+SRQR+ QL TAGFP
Sbjct 92 PPVVGYTEIAETAGLSRQRIRQLAGTAGFP 121
>gi|168698682|ref|ZP_02730959.1| hypothetical protein GobsU_04114 [Gemmata obscuriglobus UQM 2246]
Length=161
Score = 36.2 bits (82), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/57 (36%), Positives = 30/57 (53%), Gaps = 1/57 (1%)
Query 98 MSAAEIADELGVSRQRVHQLRSTAGFPAPLAD-LRGGAVWDAAAVRRFAETWERKPG 153
+S +++A +G+SRQR HQL + FP PL D G +D + + E R G
Sbjct 15 VSVSDMARTVGLSRQRFHQLMKSGVFPQPLRDEATGRPYYDESGQAQCLEVRRRNCG 71
>gi|323138995|ref|ZP_08074055.1| RNA polymerase, sigma 32 subunit, RpoH [Methylocystis sp. ATCC
49242]
gi|322395749|gb|EFX98290.1| RNA polymerase, sigma 32 subunit, RpoH [Methylocystis sp. ATCC
49242]
Length=294
Score = 35.8 bits (81), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/46 (40%), Positives = 29/46 (64%), Gaps = 0/46 (0%)
Query 76 AVQIISEPEHRLRAEAFTTPELMSAAEIADELGVSRQRVHQLRSTA 121
A+ I+SE E R+ E T L++ + D+LG+S++RV Q+ S A
Sbjct 225 ALAILSERELRIVQERRLTDNLVTLETLGDKLGISKERVRQIESRA 270
>gi|336179366|ref|YP_004584741.1| hypothetical protein FsymDg_3539 [Frankia symbiont of Datisca
glomerata]
gi|334860346|gb|AEH10820.1| hypothetical protein FsymDg_3539 [Frankia symbiont of Datisca
glomerata]
Length=98
Score = 35.4 bits (80), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 26/73 (36%), Positives = 41/73 (57%), Gaps = 12/73 (16%)
Query 94 TPELMSAAEIADELGVSRQRV-HQLRSTAGFPAPLADLR------GGAVWDAAAVRRFA- 145
+P+L+ +++IA LGV+RQ V H+LR+ PAP A + G VW + + R+
Sbjct 25 SPQLVGSSDIAAALGVTRQAVDHRLRTDPRAPAPAAVVNRTATWGGTRVWWRSDIDRWLG 84
Query 146 ----ETWERKPGR 154
+ W R+PGR
Sbjct 85 GADPDRWARRPGR 97
Lambda K H
0.319 0.134 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 407343666860
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40